Multiple sequence alignment - TraesCS2D01G080200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G080200 chr2D 100.000 3630 0 0 1 3630 34264540 34260911 0.000000e+00 6704.0
1 TraesCS2D01G080200 chr2D 85.901 688 76 12 1 674 130995842 130995162 0.000000e+00 713.0
2 TraesCS2D01G080200 chr2D 93.023 43 1 2 756 797 49257145 49257104 1.090000e-05 62.1
3 TraesCS2D01G080200 chr2B 93.171 2504 106 39 846 3322 56715571 56713106 0.000000e+00 3616.0
4 TraesCS2D01G080200 chr2B 92.980 2507 111 40 846 3322 56685674 56683203 0.000000e+00 3594.0
5 TraesCS2D01G080200 chr2B 93.115 305 21 0 452 756 56716998 56716694 7.150000e-122 448.0
6 TraesCS2D01G080200 chr2B 97.315 149 4 0 3482 3630 56683205 56683057 1.670000e-63 254.0
7 TraesCS2D01G080200 chr2B 97.315 149 4 0 3482 3630 56713108 56712960 1.670000e-63 254.0
8 TraesCS2D01G080200 chrUn 94.728 1878 74 16 1465 3322 334252158 334250286 0.000000e+00 2896.0
9 TraesCS2D01G080200 chrUn 87.898 628 36 24 846 1463 203985486 203984889 0.000000e+00 702.0
10 TraesCS2D01G080200 chrUn 97.315 149 4 0 3482 3630 203982604 203982456 1.670000e-63 254.0
11 TraesCS2D01G080200 chrUn 97.315 149 4 0 3482 3630 334250288 334250140 1.670000e-63 254.0
12 TraesCS2D01G080200 chrUn 97.315 149 4 0 3482 3630 338827452 338827304 1.670000e-63 254.0
13 TraesCS2D01G080200 chrUn 96.226 53 2 0 3270 3322 203982654 203982602 1.800000e-13 87.9
14 TraesCS2D01G080200 chrUn 96.226 53 2 0 3270 3322 338827502 338827450 1.800000e-13 87.9
15 TraesCS2D01G080200 chr2A 89.538 1300 69 31 745 2011 37200591 37199326 0.000000e+00 1585.0
16 TraesCS2D01G080200 chr2A 93.915 756 46 0 1 756 37201365 37200610 0.000000e+00 1142.0
17 TraesCS2D01G080200 chr7D 86.370 697 78 9 1 684 623833823 623834515 0.000000e+00 745.0
18 TraesCS2D01G080200 chr7D 83.597 695 95 10 2 683 175636781 175637469 5.110000e-178 634.0
19 TraesCS2D01G080200 chr7D 94.565 184 8 2 3317 3498 39001453 39001270 2.130000e-72 283.0
20 TraesCS2D01G080200 chr7D 95.977 174 6 1 3313 3485 597300976 597300803 7.670000e-72 281.0
21 TraesCS2D01G080200 chr7D 93.583 187 9 3 3300 3485 376090470 376090654 3.570000e-70 276.0
22 TraesCS2D01G080200 chr7B 84.127 693 95 10 1 681 721714215 721714904 0.000000e+00 656.0
23 TraesCS2D01G080200 chr7B 83.190 696 103 9 1 684 721532764 721533457 3.080000e-175 625.0
24 TraesCS2D01G080200 chr7B 82.471 696 108 8 1 684 721612832 721613525 6.710000e-167 597.0
25 TraesCS2D01G080200 chr7A 86.252 611 72 4 74 673 720124467 720125076 0.000000e+00 652.0
26 TraesCS2D01G080200 chr7A 83.284 682 100 5 1 671 177318500 177319178 1.850000e-172 616.0
27 TraesCS2D01G080200 chr3A 92.611 203 11 3 3294 3494 585605828 585605628 4.590000e-74 289.0
28 TraesCS2D01G080200 chr5D 96.512 172 5 1 3317 3487 25039976 25040147 2.130000e-72 283.0
29 TraesCS2D01G080200 chr6D 95.506 178 5 3 3321 3495 392896975 392897152 7.670000e-72 281.0
30 TraesCS2D01G080200 chr6D 94.944 178 8 1 3315 3491 389700535 389700712 9.930000e-71 278.0
31 TraesCS2D01G080200 chr4B 95.000 180 8 1 3321 3499 86060464 86060285 7.670000e-72 281.0
32 TraesCS2D01G080200 chr4D 95.455 176 5 3 3313 3485 404108568 404108743 9.930000e-71 278.0
33 TraesCS2D01G080200 chr5B 88.889 72 6 2 3235 3305 493531256 493531186 1.800000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G080200 chr2D 34260911 34264540 3629 True 6704.000000 6704 100.000000 1 3630 1 chr2D.!!$R1 3629
1 TraesCS2D01G080200 chr2D 130995162 130995842 680 True 713.000000 713 85.901000 1 674 1 chr2D.!!$R3 673
2 TraesCS2D01G080200 chr2B 56683057 56685674 2617 True 1924.000000 3594 95.147500 846 3630 2 chr2B.!!$R1 2784
3 TraesCS2D01G080200 chr2B 56712960 56716998 4038 True 1439.333333 3616 94.533667 452 3630 3 chr2B.!!$R2 3178
4 TraesCS2D01G080200 chrUn 334250140 334252158 2018 True 1575.000000 2896 96.021500 1465 3630 2 chrUn.!!$R2 2165
5 TraesCS2D01G080200 chrUn 203982456 203985486 3030 True 347.966667 702 93.813000 846 3630 3 chrUn.!!$R1 2784
6 TraesCS2D01G080200 chr2A 37199326 37201365 2039 True 1363.500000 1585 91.726500 1 2011 2 chr2A.!!$R1 2010
7 TraesCS2D01G080200 chr7D 623833823 623834515 692 False 745.000000 745 86.370000 1 684 1 chr7D.!!$F3 683
8 TraesCS2D01G080200 chr7D 175636781 175637469 688 False 634.000000 634 83.597000 2 683 1 chr7D.!!$F1 681
9 TraesCS2D01G080200 chr7B 721714215 721714904 689 False 656.000000 656 84.127000 1 681 1 chr7B.!!$F3 680
10 TraesCS2D01G080200 chr7B 721532764 721533457 693 False 625.000000 625 83.190000 1 684 1 chr7B.!!$F1 683
11 TraesCS2D01G080200 chr7B 721612832 721613525 693 False 597.000000 597 82.471000 1 684 1 chr7B.!!$F2 683
12 TraesCS2D01G080200 chr7A 720124467 720125076 609 False 652.000000 652 86.252000 74 673 1 chr7A.!!$F2 599
13 TraesCS2D01G080200 chr7A 177318500 177319178 678 False 616.000000 616 83.284000 1 671 1 chr7A.!!$F1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 340 0.877071 GTGACAGTGCATGGTCTTGG 59.123 55.0 17.96 0.0 35.11 3.61 F
1407 2479 0.183492 GCCCTGCAGGTAATCCATGA 59.817 55.0 30.63 0.0 38.26 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2121 3226 0.459237 AGAGAAACAGATGCTCCGCG 60.459 55.0 0.0 0.0 0.00 6.46 R
3212 4324 0.163788 CGATGTGAAAGACGGCACAC 59.836 55.0 0.0 0.0 46.52 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
188 190 1.068121 AAGGTGGTGAAGAAGGAGGG 58.932 55.000 0.00 0.00 0.00 4.30
203 205 3.116174 AGGAGGGGAGGTACAAGATTTC 58.884 50.000 0.00 0.00 0.00 2.17
207 209 3.203040 AGGGGAGGTACAAGATTTCCATG 59.797 47.826 0.00 0.00 0.00 3.66
227 229 2.019984 GGATGTGCAATGGGAGAAGAC 58.980 52.381 0.00 0.00 0.00 3.01
269 271 4.836125 TGATGTTGGAGAAGAACAAAGC 57.164 40.909 0.00 0.00 36.90 3.51
338 340 0.877071 GTGACAGTGCATGGTCTTGG 59.123 55.000 17.96 0.00 35.11 3.61
376 380 1.841663 GCGGCTTGCGAAAGAGACAA 61.842 55.000 7.54 0.00 0.00 3.18
415 419 1.699083 TGCAGGACATCAACCTCTTGA 59.301 47.619 0.00 0.00 40.77 3.02
562 571 8.732746 ACTAAACTTATTTGGGCTACACTATG 57.267 34.615 0.00 0.00 30.81 2.23
566 575 9.523168 AAACTTATTTGGGCTACACTATGTTTA 57.477 29.630 0.00 0.00 30.89 2.01
647 662 5.397899 GGATATTGAGATTTGGGGAGTGTGA 60.398 44.000 0.00 0.00 0.00 3.58
700 715 4.299978 GGCGCCAGTTTAAAATGTTTACA 58.700 39.130 24.80 0.00 0.00 2.41
888 1938 7.420184 AAAACTGACAGAACCAAACAAAAAG 57.580 32.000 10.08 0.00 0.00 2.27
1056 2127 2.656560 ACGAGCACTTGCCTAACTAG 57.343 50.000 0.00 0.00 43.38 2.57
1066 2137 5.026790 ACTTGCCTAACTAGGATCAGTTCT 58.973 41.667 6.98 0.00 46.63 3.01
1067 2138 5.485708 ACTTGCCTAACTAGGATCAGTTCTT 59.514 40.000 6.98 0.00 46.63 2.52
1135 2207 2.808543 GTTTCCAAGTTGAGCAGACGAT 59.191 45.455 3.87 0.00 0.00 3.73
1144 2216 1.683385 TGAGCAGACGATCCACCTATG 59.317 52.381 0.00 0.00 0.00 2.23
1185 2257 3.318275 CGGGGATTTCATACTTCTCTCGA 59.682 47.826 0.00 0.00 0.00 4.04
1186 2258 4.623002 GGGGATTTCATACTTCTCTCGAC 58.377 47.826 0.00 0.00 0.00 4.20
1187 2259 4.291783 GGGATTTCATACTTCTCTCGACG 58.708 47.826 0.00 0.00 0.00 5.12
1188 2260 4.202030 GGGATTTCATACTTCTCTCGACGT 60.202 45.833 0.00 0.00 0.00 4.34
1254 2326 1.134075 GCTGTGCGCTCTTGTCATG 59.866 57.895 9.73 0.00 35.14 3.07
1402 2474 1.440145 GCTTCGCCCTGCAGGTAATC 61.440 60.000 30.63 15.35 38.26 1.75
1404 2476 1.558167 TTCGCCCTGCAGGTAATCCA 61.558 55.000 30.63 7.23 38.26 3.41
1405 2477 1.149174 CGCCCTGCAGGTAATCCAT 59.851 57.895 30.63 0.00 38.26 3.41
1406 2478 1.168407 CGCCCTGCAGGTAATCCATG 61.168 60.000 30.63 14.04 38.26 3.66
1407 2479 0.183492 GCCCTGCAGGTAATCCATGA 59.817 55.000 30.63 0.00 38.26 3.07
1488 2571 2.082231 TCTCTTTTCTCTGCATGCAGC 58.918 47.619 37.48 4.48 43.31 5.25
1717 2800 2.359975 GACCCCAGCAAGTTCCGG 60.360 66.667 0.00 0.00 0.00 5.14
1818 2901 5.168569 CAACTCGTTCCAATACAAGCTCTA 58.831 41.667 0.00 0.00 0.00 2.43
1914 3001 2.159960 GCTAGCACTTTCTTTCGACACG 60.160 50.000 10.63 0.00 0.00 4.49
2059 3164 5.122711 TGTGCATTACATTGTCTCTGATGTG 59.877 40.000 0.00 0.00 37.12 3.21
2107 3212 2.401766 GCAATCCACCAGCACCGAG 61.402 63.158 0.00 0.00 0.00 4.63
2116 3221 1.480954 ACCAGCACCGAGAAATACGAT 59.519 47.619 0.00 0.00 0.00 3.73
2121 3226 2.731976 GCACCGAGAAATACGATGATCC 59.268 50.000 0.00 0.00 0.00 3.36
2122 3227 2.980476 CACCGAGAAATACGATGATCCG 59.020 50.000 0.00 0.00 0.00 4.18
2144 3249 2.709213 GGAGCATCTGTTTCTCTGCTT 58.291 47.619 0.00 0.00 44.56 3.91
2157 3262 9.387123 CTGTTTCTCTGCTTAGTTATTTTCAAC 57.613 33.333 0.00 0.00 0.00 3.18
2175 3280 2.033141 TGCAGCTCCACTTGCTCC 59.967 61.111 0.00 0.00 38.92 4.70
2196 3301 0.249238 GGAGCATAGTCGTGGAGCAG 60.249 60.000 0.00 0.00 0.00 4.24
2267 3372 2.951229 TGGGGAACTTTTGAGAGGTC 57.049 50.000 0.00 0.00 32.47 3.85
2304 3409 5.096954 CGAGCTAATCGTCATACTTCTCA 57.903 43.478 0.00 0.00 46.62 3.27
2309 3414 6.920758 AGCTAATCGTCATACTTCTCATGTTC 59.079 38.462 0.00 0.00 0.00 3.18
2336 3441 9.357161 CCCTACTAACATAAGACTAAGTCTGAT 57.643 37.037 0.00 0.00 42.59 2.90
2348 3453 6.614906 AGACTAAGTCTGATCTCCAATCCAAT 59.385 38.462 0.00 0.00 41.76 3.16
2360 3465 3.055240 TCCAATCCAATGGCAATTGAACC 60.055 43.478 15.79 2.03 45.17 3.62
2368 3474 8.088463 TCCAATGGCAATTGAACCTAATAATT 57.912 30.769 15.79 0.00 45.17 1.40
2415 3521 0.943835 TCATGTGCACACGACCTTCG 60.944 55.000 24.37 3.49 46.93 3.79
2428 3534 2.032054 CGACCTTCGCATGCATAATGTT 59.968 45.455 19.57 0.00 38.65 2.71
2476 3582 2.625823 ATGCACCCGCTTTTCACCG 61.626 57.895 0.00 0.00 39.64 4.94
2500 3606 6.325919 ACACCGATGACAACAACATTTATT 57.674 33.333 0.00 0.00 0.00 1.40
2505 3611 9.751542 ACCGATGACAACAACATTTATTTTTAA 57.248 25.926 0.00 0.00 0.00 1.52
2661 3769 1.209504 TGGGGACATCGATCCTCAAAC 59.790 52.381 5.10 0.00 46.79 2.93
2663 3771 2.158755 GGGGACATCGATCCTCAAACAT 60.159 50.000 5.09 0.00 39.32 2.71
2773 3881 1.064505 CGCATTTGCCATCTGAATCGT 59.935 47.619 0.00 0.00 37.91 3.73
2891 3999 9.601971 GAAGCGTAATTTTGACTATGTAAACAA 57.398 29.630 0.00 0.00 0.00 2.83
2988 4096 9.801873 ATAAAATATGCATGTCCAAAGTACAAC 57.198 29.630 10.16 0.00 0.00 3.32
2998 4106 2.732500 CCAAAGTACAACGTGCGTATGA 59.267 45.455 0.00 0.00 0.00 2.15
3212 4324 6.907206 AGGAAAATGAACACAACACAAATG 57.093 33.333 0.00 0.00 0.00 2.32
3226 4338 2.020720 ACAAATGTGTGCCGTCTTTCA 58.979 42.857 0.00 0.00 36.31 2.69
3320 4830 7.928307 AATAATAAAGTCAGAGCACACATGT 57.072 32.000 0.00 0.00 0.00 3.21
3322 4832 6.727824 AATAAAGTCAGAGCACACATGTAC 57.272 37.500 0.00 0.00 0.00 2.90
3323 4833 4.342862 AAAGTCAGAGCACACATGTACT 57.657 40.909 0.00 0.00 0.00 2.73
3324 4834 3.584406 AGTCAGAGCACACATGTACTC 57.416 47.619 12.52 12.52 38.43 2.59
3325 4835 2.232452 AGTCAGAGCACACATGTACTCC 59.768 50.000 15.43 4.93 38.83 3.85
3326 4836 1.550524 TCAGAGCACACATGTACTCCC 59.449 52.381 15.43 0.32 38.83 4.30
3327 4837 1.552337 CAGAGCACACATGTACTCCCT 59.448 52.381 15.43 2.33 38.83 4.20
3328 4838 1.827969 AGAGCACACATGTACTCCCTC 59.172 52.381 15.43 9.76 38.83 4.30
3329 4839 0.905357 AGCACACATGTACTCCCTCC 59.095 55.000 0.00 0.00 0.00 4.30
3330 4840 0.460284 GCACACATGTACTCCCTCCG 60.460 60.000 0.00 0.00 0.00 4.63
3331 4841 0.895530 CACACATGTACTCCCTCCGT 59.104 55.000 0.00 0.00 0.00 4.69
3332 4842 1.275291 CACACATGTACTCCCTCCGTT 59.725 52.381 0.00 0.00 0.00 4.44
3333 4843 1.549170 ACACATGTACTCCCTCCGTTC 59.451 52.381 0.00 0.00 0.00 3.95
3334 4844 1.134788 CACATGTACTCCCTCCGTTCC 60.135 57.143 0.00 0.00 0.00 3.62
3335 4845 1.273098 ACATGTACTCCCTCCGTTCCT 60.273 52.381 0.00 0.00 0.00 3.36
3336 4846 2.024655 ACATGTACTCCCTCCGTTCCTA 60.025 50.000 0.00 0.00 0.00 2.94
3337 4847 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3338 4848 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3339 4849 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3340 4850 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3341 4851 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3342 4852 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
3343 4853 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3344 4854 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3345 4855 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3346 4856 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3347 4857 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3348 4858 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3349 4859 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3350 4860 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3351 4861 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3352 4862 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3353 4863 9.374838 TCCGTTCCTAAATATTTGTCTTTCTAC 57.625 33.333 11.05 0.00 0.00 2.59
3354 4864 9.158233 CCGTTCCTAAATATTTGTCTTTCTACA 57.842 33.333 11.05 0.00 0.00 2.74
3366 4876 9.956720 ATTTGTCTTTCTACAGATTTCAACAAG 57.043 29.630 0.00 0.00 0.00 3.16
3367 4877 8.506168 TTGTCTTTCTACAGATTTCAACAAGT 57.494 30.769 0.00 0.00 0.00 3.16
3368 4878 7.919690 TGTCTTTCTACAGATTTCAACAAGTG 58.080 34.615 0.00 0.00 0.00 3.16
3369 4879 7.768582 TGTCTTTCTACAGATTTCAACAAGTGA 59.231 33.333 0.00 0.00 0.00 3.41
3370 4880 8.064814 GTCTTTCTACAGATTTCAACAAGTGAC 58.935 37.037 0.00 0.00 35.39 3.67
3371 4881 7.987458 TCTTTCTACAGATTTCAACAAGTGACT 59.013 33.333 0.00 0.00 35.39 3.41
3372 4882 9.261180 CTTTCTACAGATTTCAACAAGTGACTA 57.739 33.333 0.00 0.00 35.39 2.59
3373 4883 8.589335 TTCTACAGATTTCAACAAGTGACTAC 57.411 34.615 0.00 0.00 35.39 2.73
3374 4884 7.722363 TCTACAGATTTCAACAAGTGACTACA 58.278 34.615 0.00 0.00 35.39 2.74
3375 4885 8.367911 TCTACAGATTTCAACAAGTGACTACAT 58.632 33.333 0.00 0.00 35.39 2.29
3376 4886 9.639601 CTACAGATTTCAACAAGTGACTACATA 57.360 33.333 0.00 0.00 35.39 2.29
3377 4887 8.311650 ACAGATTTCAACAAGTGACTACATAC 57.688 34.615 0.00 0.00 35.39 2.39
3378 4888 7.116376 ACAGATTTCAACAAGTGACTACATACG 59.884 37.037 0.00 0.00 35.39 3.06
3379 4889 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
3380 4890 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3381 4891 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3382 4892 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3383 4893 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3384 4894 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3385 4895 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3386 4896 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3387 4897 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3388 4898 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3389 4899 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3390 4900 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3391 4901 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3392 4902 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3393 4903 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3394 4904 3.935203 ACATACGGAGCAAAATGAGTGAG 59.065 43.478 0.00 0.00 0.00 3.51
3395 4905 2.550830 ACGGAGCAAAATGAGTGAGT 57.449 45.000 0.00 0.00 0.00 3.41
3396 4906 2.417719 ACGGAGCAAAATGAGTGAGTC 58.582 47.619 0.00 0.00 0.00 3.36
3397 4907 2.037772 ACGGAGCAAAATGAGTGAGTCT 59.962 45.455 0.00 0.00 0.00 3.24
3398 4908 3.258372 ACGGAGCAAAATGAGTGAGTCTA 59.742 43.478 0.00 0.00 0.00 2.59
3399 4909 3.614616 CGGAGCAAAATGAGTGAGTCTAC 59.385 47.826 0.00 0.00 0.00 2.59
3400 4910 3.614616 GGAGCAAAATGAGTGAGTCTACG 59.385 47.826 0.00 0.00 0.00 3.51
3401 4911 2.996621 AGCAAAATGAGTGAGTCTACGC 59.003 45.455 0.00 0.00 0.00 4.42
3402 4912 2.996621 GCAAAATGAGTGAGTCTACGCT 59.003 45.455 0.00 0.00 0.00 5.07
3403 4913 3.061429 GCAAAATGAGTGAGTCTACGCTC 59.939 47.826 0.00 0.00 44.55 5.03
3404 4914 4.489810 CAAAATGAGTGAGTCTACGCTCT 58.510 43.478 0.00 0.00 44.58 4.09
3405 4915 5.641709 CAAAATGAGTGAGTCTACGCTCTA 58.358 41.667 0.00 0.00 44.58 2.43
3406 4916 5.899120 AAATGAGTGAGTCTACGCTCTAA 57.101 39.130 0.00 0.00 44.58 2.10
3407 4917 5.899120 AATGAGTGAGTCTACGCTCTAAA 57.101 39.130 0.00 0.00 44.58 1.85
3408 4918 5.899120 ATGAGTGAGTCTACGCTCTAAAA 57.101 39.130 0.00 0.00 44.58 1.52
3409 4919 5.899120 TGAGTGAGTCTACGCTCTAAAAT 57.101 39.130 0.00 0.00 44.58 1.82
3410 4920 6.997239 TGAGTGAGTCTACGCTCTAAAATA 57.003 37.500 0.00 0.00 44.58 1.40
3411 4921 7.569639 TGAGTGAGTCTACGCTCTAAAATAT 57.430 36.000 0.00 0.00 44.58 1.28
3412 4922 7.418408 TGAGTGAGTCTACGCTCTAAAATATG 58.582 38.462 0.00 0.00 44.58 1.78
3413 4923 7.067129 TGAGTGAGTCTACGCTCTAAAATATGT 59.933 37.037 0.00 0.00 44.58 2.29
3414 4924 7.419204 AGTGAGTCTACGCTCTAAAATATGTC 58.581 38.462 0.00 0.00 36.51 3.06
3415 4925 7.283580 AGTGAGTCTACGCTCTAAAATATGTCT 59.716 37.037 0.00 0.00 36.51 3.41
3416 4926 8.557864 GTGAGTCTACGCTCTAAAATATGTCTA 58.442 37.037 0.00 0.00 36.51 2.59
3417 4927 9.286170 TGAGTCTACGCTCTAAAATATGTCTAT 57.714 33.333 0.00 0.00 36.51 1.98
3443 4953 5.801350 CACTGTATGTGGTAGTCCATTTG 57.199 43.478 0.00 0.00 46.20 2.32
3444 4954 5.487433 CACTGTATGTGGTAGTCCATTTGA 58.513 41.667 0.00 0.00 46.20 2.69
3445 4955 5.937540 CACTGTATGTGGTAGTCCATTTGAA 59.062 40.000 0.00 0.00 46.20 2.69
3446 4956 6.429692 CACTGTATGTGGTAGTCCATTTGAAA 59.570 38.462 0.00 0.00 46.20 2.69
3447 4957 7.121168 CACTGTATGTGGTAGTCCATTTGAAAT 59.879 37.037 0.00 0.00 46.20 2.17
3448 4958 7.336931 ACTGTATGTGGTAGTCCATTTGAAATC 59.663 37.037 0.00 0.00 46.20 2.17
3449 4959 7.402054 TGTATGTGGTAGTCCATTTGAAATCT 58.598 34.615 0.00 0.00 46.20 2.40
3450 4960 7.552687 TGTATGTGGTAGTCCATTTGAAATCTC 59.447 37.037 0.00 0.00 46.20 2.75
3451 4961 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
3452 4962 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
3453 4963 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
3454 4964 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
3455 4965 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
3456 4966 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
3460 4970 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
3461 4971 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
3478 4988 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
3479 4989 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3480 4990 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3604 5114 9.950680 TGCATAATTAAATAGCTTTGCTAGAAC 57.049 29.630 0.00 0.00 44.66 3.01
3623 5133 9.438228 GCTAGAACCTAATTTTCTAACTTCTGT 57.562 33.333 0.00 0.00 35.59 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
188 190 4.503714 TCCATGGAAATCTTGTACCTCC 57.496 45.455 13.46 0.00 0.00 4.30
203 205 1.037493 CTCCCATTGCACATCCATGG 58.963 55.000 4.97 4.97 0.00 3.66
207 209 2.019984 GTCTTCTCCCATTGCACATCC 58.980 52.381 0.00 0.00 0.00 3.51
227 229 1.102222 CCTCTCCCGGTCTAACTCCG 61.102 65.000 0.00 0.00 46.49 4.63
269 271 3.876274 TCTCTTGACTCTCCAATTCGG 57.124 47.619 0.00 0.00 0.00 4.30
338 340 2.003196 CAACCTCTCTTTCTCGAGCC 57.997 55.000 7.81 0.00 0.00 4.70
376 380 3.201290 GCAACATGATCATCGACTCCTT 58.799 45.455 4.86 0.00 0.00 3.36
415 419 2.438392 ACCACTTCTTCCCTTTCTCGTT 59.562 45.455 0.00 0.00 0.00 3.85
473 477 6.549061 ACATGAATGAATCAATGACTTCACG 58.451 36.000 0.00 0.00 42.54 4.35
529 538 5.451381 GCCCAAATAAGTTTAGTACATGCCC 60.451 44.000 0.00 0.00 0.00 5.36
647 662 3.580039 CCCATTTGGCCTTCTCCATAAT 58.420 45.455 3.32 0.00 35.77 1.28
700 715 8.723311 CCAGATGCATGAACATTGTTTAAATTT 58.277 29.630 2.46 0.00 0.00 1.82
888 1938 2.032377 TCTGGTTTTCGTGTTTCATCGC 60.032 45.455 0.00 0.00 0.00 4.58
914 1964 6.091076 TCCCTAGGTTTTTCATGATGGATT 57.909 37.500 8.29 0.00 0.00 3.01
915 1965 5.732331 TCCCTAGGTTTTTCATGATGGAT 57.268 39.130 8.29 0.00 0.00 3.41
916 1966 5.261216 GTTCCCTAGGTTTTTCATGATGGA 58.739 41.667 8.29 0.00 0.00 3.41
922 1972 4.317530 GGAGGTTCCCTAGGTTTTTCAT 57.682 45.455 8.29 0.00 31.76 2.57
1056 2127 9.710900 ATTTTTACATGGAAAAAGAACTGATCC 57.289 29.630 27.76 0.00 40.59 3.36
1113 2185 1.264288 CGTCTGCTCAACTTGGAAACC 59.736 52.381 0.00 0.00 0.00 3.27
1135 2207 6.781014 AGAATAATCCGTCTTACATAGGTGGA 59.219 38.462 0.00 0.00 33.82 4.02
1144 2216 4.296690 CCCGTCAGAATAATCCGTCTTAC 58.703 47.826 0.00 0.00 0.00 2.34
1185 2257 5.522456 TGACGTTTAAGATGAACAGTACGT 58.478 37.500 0.00 0.00 42.79 3.57
1186 2258 5.060569 CCTGACGTTTAAGATGAACAGTACG 59.939 44.000 0.00 0.00 0.00 3.67
1187 2259 5.163982 GCCTGACGTTTAAGATGAACAGTAC 60.164 44.000 0.00 0.00 0.00 2.73
1188 2260 4.927425 GCCTGACGTTTAAGATGAACAGTA 59.073 41.667 0.00 0.00 0.00 2.74
1282 2354 4.933064 GACGGAGGCGGATGCGAG 62.933 72.222 12.10 0.00 44.10 5.03
1386 2458 1.344953 ATGGATTACCTGCAGGGCGA 61.345 55.000 35.42 20.94 40.27 5.54
1404 2476 5.603596 TGCTTTTTCTTTGCATGAAGTCAT 58.396 33.333 0.00 0.00 36.96 3.06
1405 2477 5.008619 TGCTTTTTCTTTGCATGAAGTCA 57.991 34.783 0.00 0.00 0.00 3.41
1406 2478 5.119743 GGATGCTTTTTCTTTGCATGAAGTC 59.880 40.000 4.36 0.00 45.90 3.01
1407 2479 4.992951 GGATGCTTTTTCTTTGCATGAAGT 59.007 37.500 4.36 0.00 45.90 3.01
1675 2758 1.668151 GGTGACGGAGCTGAACCAC 60.668 63.158 0.00 0.00 0.00 4.16
2043 3148 5.233225 CACAGTACACATCAGAGACAATGT 58.767 41.667 0.00 0.00 36.56 2.71
2059 3164 9.813446 ATAGGTACTTAATTACAAGCACAGTAC 57.187 33.333 10.79 10.79 41.75 2.73
2107 3212 1.986378 CTCCGCGGATCATCGTATTTC 59.014 52.381 31.19 0.00 0.00 2.17
2116 3221 1.960040 AACAGATGCTCCGCGGATCA 61.960 55.000 31.55 31.55 42.39 2.92
2121 3226 0.459237 AGAGAAACAGATGCTCCGCG 60.459 55.000 0.00 0.00 0.00 6.46
2122 3227 1.005340 CAGAGAAACAGATGCTCCGC 58.995 55.000 0.00 0.00 0.00 5.54
2140 3245 5.241506 AGCTGCAGTTGAAAATAACTAAGCA 59.758 36.000 16.64 12.52 44.18 3.91
2144 3249 5.181245 GTGGAGCTGCAGTTGAAAATAACTA 59.819 40.000 16.64 0.00 38.78 2.24
2157 3262 3.576004 GAGCAAGTGGAGCTGCAG 58.424 61.111 8.73 10.11 43.58 4.41
2175 3280 1.360551 CTCCACGACTATGCTCCCG 59.639 63.158 0.00 0.00 0.00 5.14
2196 3301 1.513622 GCCTGTTCGGAGGTCTCTC 59.486 63.158 0.00 0.00 39.25 3.20
2267 3372 2.329379 AGCTCGAGTCAAAGTTAAGCG 58.671 47.619 15.13 0.00 33.62 4.68
2303 3408 7.125792 AGTCTTATGTTAGTAGGGGAACATG 57.874 40.000 9.85 0.00 44.12 3.21
2304 3409 8.849543 TTAGTCTTATGTTAGTAGGGGAACAT 57.150 34.615 5.65 5.65 45.74 2.71
2309 3414 7.778853 TCAGACTTAGTCTTATGTTAGTAGGGG 59.221 40.741 12.76 0.00 41.37 4.79
2336 3441 3.710724 TCAATTGCCATTGGATTGGAGA 58.289 40.909 6.95 0.00 40.41 3.71
2348 3453 9.213799 GTTTTCAATTATTAGGTTCAATTGCCA 57.786 29.630 0.00 0.00 38.79 4.92
2368 3474 4.603989 ATGTGGCACATTGATGTTTTCA 57.396 36.364 26.78 0.00 44.52 2.69
2415 3521 3.985279 CCTGCACATAACATTATGCATGC 59.015 43.478 11.82 11.82 43.30 4.06
2457 3563 1.080569 GGTGAAAAGCGGGTGCATG 60.081 57.895 0.00 0.00 46.23 4.06
2458 3564 2.625823 CGGTGAAAAGCGGGTGCAT 61.626 57.895 0.00 0.00 46.23 3.96
2476 3582 3.896648 AATGTTGTTGTCATCGGTGTC 57.103 42.857 0.00 0.00 0.00 3.67
2577 3684 4.811969 AAATTAAAAACCCGATGTCCCC 57.188 40.909 0.00 0.00 0.00 4.81
2670 3778 0.901827 TAGAGCTGATGTCCCGCAAA 59.098 50.000 0.00 0.00 0.00 3.68
2674 3782 3.426829 CGTATCATAGAGCTGATGTCCCG 60.427 52.174 0.00 0.00 36.55 5.14
2891 3999 6.062258 TCCTTATTTGCTACTAAGTTGCCT 57.938 37.500 4.97 0.00 33.72 4.75
2988 4096 3.857665 AGAACTTGTATGTCATACGCACG 59.142 43.478 16.40 8.24 38.59 5.34
2998 4106 9.302345 CAACGTATAAGATGAGAACTTGTATGT 57.698 33.333 0.00 0.00 40.31 2.29
3110 4222 9.872721 ATGTTTGAAAAATTGAATTGCCTTTTT 57.127 22.222 0.00 0.00 34.46 1.94
3164 4276 7.949690 ATAAGGCTATACCATATGTCACGTA 57.050 36.000 1.24 0.00 43.14 3.57
3212 4324 0.163788 CGATGTGAAAGACGGCACAC 59.836 55.000 0.00 0.00 46.52 3.82
3226 4338 0.908910 TATGTGACCCAAGCCGATGT 59.091 50.000 0.00 0.00 0.00 3.06
3319 4829 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
3320 4830 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
3321 4831 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3322 4832 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3323 4833 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3324 4834 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3325 4835 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3326 4836 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3327 4837 9.374838 GTAGAAAGACAAATATTTAGGAACGGA 57.625 33.333 0.00 0.00 0.00 4.69
3328 4838 9.158233 TGTAGAAAGACAAATATTTAGGAACGG 57.842 33.333 0.00 0.00 0.00 4.44
3340 4850 9.956720 CTTGTTGAAATCTGTAGAAAGACAAAT 57.043 29.630 0.00 0.00 0.00 2.32
3341 4851 8.956426 ACTTGTTGAAATCTGTAGAAAGACAAA 58.044 29.630 0.00 0.00 0.00 2.83
3342 4852 8.397906 CACTTGTTGAAATCTGTAGAAAGACAA 58.602 33.333 0.00 0.00 0.00 3.18
3343 4853 7.768582 TCACTTGTTGAAATCTGTAGAAAGACA 59.231 33.333 0.00 0.00 0.00 3.41
3344 4854 8.064814 GTCACTTGTTGAAATCTGTAGAAAGAC 58.935 37.037 0.00 0.00 35.39 3.01
3345 4855 7.987458 AGTCACTTGTTGAAATCTGTAGAAAGA 59.013 33.333 0.00 0.00 35.39 2.52
3346 4856 8.147642 AGTCACTTGTTGAAATCTGTAGAAAG 57.852 34.615 0.00 0.00 35.39 2.62
3347 4857 9.042008 GTAGTCACTTGTTGAAATCTGTAGAAA 57.958 33.333 0.00 0.00 35.39 2.52
3348 4858 8.201464 TGTAGTCACTTGTTGAAATCTGTAGAA 58.799 33.333 0.00 0.00 35.39 2.10
3349 4859 7.722363 TGTAGTCACTTGTTGAAATCTGTAGA 58.278 34.615 0.00 0.00 35.39 2.59
3350 4860 7.946655 TGTAGTCACTTGTTGAAATCTGTAG 57.053 36.000 0.00 0.00 35.39 2.74
3351 4861 9.419297 GTATGTAGTCACTTGTTGAAATCTGTA 57.581 33.333 0.00 0.00 35.39 2.74
3352 4862 7.116376 CGTATGTAGTCACTTGTTGAAATCTGT 59.884 37.037 0.00 0.00 35.39 3.41
3353 4863 7.411912 CCGTATGTAGTCACTTGTTGAAATCTG 60.412 40.741 0.00 0.00 35.39 2.90
3354 4864 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3355 4865 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
3356 4866 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3357 4867 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3358 4868 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3359 4869 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3360 4870 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3361 4871 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3362 4872 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3363 4873 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3364 4874 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3365 4875 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3366 4876 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3367 4877 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3368 4878 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3369 4879 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3370 4880 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3371 4881 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3372 4882 3.935203 CTCACTCATTTTGCTCCGTATGT 59.065 43.478 0.00 0.00 0.00 2.29
3373 4883 3.935203 ACTCACTCATTTTGCTCCGTATG 59.065 43.478 0.00 0.00 0.00 2.39
3374 4884 4.081420 AGACTCACTCATTTTGCTCCGTAT 60.081 41.667 0.00 0.00 0.00 3.06
3375 4885 3.258372 AGACTCACTCATTTTGCTCCGTA 59.742 43.478 0.00 0.00 0.00 4.02
3376 4886 2.037772 AGACTCACTCATTTTGCTCCGT 59.962 45.455 0.00 0.00 0.00 4.69
3377 4887 2.693069 AGACTCACTCATTTTGCTCCG 58.307 47.619 0.00 0.00 0.00 4.63
3378 4888 3.614616 CGTAGACTCACTCATTTTGCTCC 59.385 47.826 0.00 0.00 0.00 4.70
3379 4889 3.061429 GCGTAGACTCACTCATTTTGCTC 59.939 47.826 0.00 0.00 0.00 4.26
3380 4890 2.996621 GCGTAGACTCACTCATTTTGCT 59.003 45.455 0.00 0.00 0.00 3.91
3381 4891 2.996621 AGCGTAGACTCACTCATTTTGC 59.003 45.455 0.00 0.00 0.00 3.68
3382 4892 4.489810 AGAGCGTAGACTCACTCATTTTG 58.510 43.478 0.00 0.00 39.26 2.44
3383 4893 4.792521 AGAGCGTAGACTCACTCATTTT 57.207 40.909 0.00 0.00 39.26 1.82
3384 4894 5.899120 TTAGAGCGTAGACTCACTCATTT 57.101 39.130 0.00 0.00 39.26 2.32
3385 4895 5.899120 TTTAGAGCGTAGACTCACTCATT 57.101 39.130 0.00 0.00 39.26 2.57
3386 4896 5.899120 TTTTAGAGCGTAGACTCACTCAT 57.101 39.130 0.00 0.00 39.26 2.90
3387 4897 5.899120 ATTTTAGAGCGTAGACTCACTCA 57.101 39.130 0.00 0.00 39.26 3.41
3388 4898 7.419204 ACATATTTTAGAGCGTAGACTCACTC 58.581 38.462 0.00 0.00 39.26 3.51
3389 4899 7.283580 AGACATATTTTAGAGCGTAGACTCACT 59.716 37.037 0.00 0.00 39.26 3.41
3390 4900 7.419204 AGACATATTTTAGAGCGTAGACTCAC 58.581 38.462 0.00 0.00 39.26 3.51
3391 4901 7.569639 AGACATATTTTAGAGCGTAGACTCA 57.430 36.000 0.00 0.00 39.26 3.41
3434 4944 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
3435 4945 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
3452 4962 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
3453 4963 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
3454 4964 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3455 4965 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3456 4966 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3457 4967 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3458 4968 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3459 4969 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3460 4970 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3461 4971 8.912614 ATATACTCCCTCCGTTCCTAAATATT 57.087 34.615 0.00 0.00 0.00 1.28
3462 4972 8.345306 AGATATACTCCCTCCGTTCCTAAATAT 58.655 37.037 0.00 0.00 0.00 1.28
3463 4973 7.706674 AGATATACTCCCTCCGTTCCTAAATA 58.293 38.462 0.00 0.00 0.00 1.40
3464 4974 6.563163 AGATATACTCCCTCCGTTCCTAAAT 58.437 40.000 0.00 0.00 0.00 1.40
3465 4975 5.961897 AGATATACTCCCTCCGTTCCTAAA 58.038 41.667 0.00 0.00 0.00 1.85
3466 4976 5.595814 AGATATACTCCCTCCGTTCCTAA 57.404 43.478 0.00 0.00 0.00 2.69
3467 4977 5.595814 AAGATATACTCCCTCCGTTCCTA 57.404 43.478 0.00 0.00 0.00 2.94
3468 4978 4.472690 AAGATATACTCCCTCCGTTCCT 57.527 45.455 0.00 0.00 0.00 3.36
3469 4979 4.158209 GCTAAGATATACTCCCTCCGTTCC 59.842 50.000 0.00 0.00 0.00 3.62
3470 4980 4.765856 TGCTAAGATATACTCCCTCCGTTC 59.234 45.833 0.00 0.00 0.00 3.95
3471 4981 4.737578 TGCTAAGATATACTCCCTCCGTT 58.262 43.478 0.00 0.00 0.00 4.44
3472 4982 4.383931 TGCTAAGATATACTCCCTCCGT 57.616 45.455 0.00 0.00 0.00 4.69
3473 4983 5.923733 AATGCTAAGATATACTCCCTCCG 57.076 43.478 0.00 0.00 0.00 4.63
3474 4984 7.010339 ACAAATGCTAAGATATACTCCCTCC 57.990 40.000 0.00 0.00 0.00 4.30
3475 4985 7.604545 GGAACAAATGCTAAGATATACTCCCTC 59.395 40.741 0.00 0.00 0.00 4.30
3476 4986 7.454225 GGAACAAATGCTAAGATATACTCCCT 58.546 38.462 0.00 0.00 0.00 4.20
3477 4987 6.655425 GGGAACAAATGCTAAGATATACTCCC 59.345 42.308 0.00 0.00 0.00 4.30
3478 4988 6.655425 GGGGAACAAATGCTAAGATATACTCC 59.345 42.308 0.00 0.00 0.00 3.85
3479 4989 7.454225 AGGGGAACAAATGCTAAGATATACTC 58.546 38.462 0.00 0.00 0.00 2.59
3480 4990 7.394144 AGGGGAACAAATGCTAAGATATACT 57.606 36.000 0.00 0.00 0.00 2.12
3511 5021 7.996098 AGCTACACCATTTGTTACAAATACT 57.004 32.000 20.94 8.02 39.91 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.