Multiple sequence alignment - TraesCS2D01G080100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G080100 chr2D 100.000 4964 0 0 1 4964 34231135 34236098 0.000000e+00 9167.0
1 TraesCS2D01G080100 chr2A 90.138 3559 199 52 797 4264 37089053 37092550 0.000000e+00 4488.0
2 TraesCS2D01G080100 chr2A 89.971 688 31 10 1 673 37088122 37088786 0.000000e+00 854.0
3 TraesCS2D01G080100 chr2A 89.844 128 9 1 4321 4444 37092809 37092936 1.430000e-35 161.0
4 TraesCS2D01G080100 chr2B 88.637 3133 167 61 732 3771 56521841 56524877 0.000000e+00 3639.0
5 TraesCS2D01G080100 chr2B 88.546 681 36 15 1 652 56521036 56521703 0.000000e+00 787.0
6 TraesCS2D01G080100 chr2B 93.470 536 15 12 3758 4275 56624027 56624560 0.000000e+00 778.0
7 TraesCS2D01G080100 chr2B 77.869 488 78 19 4306 4778 56624556 56625028 4.890000e-70 276.0
8 TraesCS2D01G080100 chr2B 93.056 144 10 0 3018 3161 56606146 56606289 1.400000e-50 211.0
9 TraesCS2D01G080100 chr2B 86.420 162 15 3 3900 4054 56528282 56528443 2.380000e-38 171.0
10 TraesCS2D01G080100 chr2B 95.960 99 4 0 3677 3775 56623918 56624016 1.430000e-35 161.0
11 TraesCS2D01G080100 chrUn 89.891 643 19 20 3677 4275 217883431 217884071 0.000000e+00 785.0
12 TraesCS2D01G080100 chrUn 89.891 643 19 20 3677 4275 340507734 340508374 0.000000e+00 785.0
13 TraesCS2D01G080100 chrUn 90.000 640 18 20 3680 4275 340698573 340697936 0.000000e+00 785.0
14 TraesCS2D01G080100 chrUn 90.000 640 18 20 3680 4275 340701106 340700469 0.000000e+00 785.0
15 TraesCS2D01G080100 chrUn 90.000 640 18 20 3680 4275 392834568 392833931 0.000000e+00 785.0
16 TraesCS2D01G080100 chrUn 93.970 199 12 0 3018 3216 348369257 348369059 8.080000e-78 302.0
17 TraesCS2D01G080100 chrUn 94.388 196 11 0 3018 3213 358923323 358923518 8.080000e-78 302.0
18 TraesCS2D01G080100 chrUn 93.970 199 12 0 3018 3216 404533609 404533411 8.080000e-78 302.0
19 TraesCS2D01G080100 chrUn 94.388 196 11 0 3018 3213 457757428 457757623 8.080000e-78 302.0
20 TraesCS2D01G080100 chrUn 78.288 479 71 20 4306 4770 217884067 217884526 1.360000e-70 278.0
21 TraesCS2D01G080100 chrUn 78.216 482 71 21 4309 4776 340697937 340697476 1.360000e-70 278.0
22 TraesCS2D01G080100 chrUn 78.216 482 72 20 4309 4776 340700470 340700008 1.360000e-70 278.0
23 TraesCS2D01G080100 chrUn 76.398 483 66 29 4309 4776 392833932 392833483 3.010000e-52 217.0
24 TraesCS2D01G080100 chrUn 79.681 251 35 10 4306 4544 340508370 340508616 3.070000e-37 167.0
25 TraesCS2D01G080100 chr7D 80.109 548 49 33 1080 1592 450003554 450003032 2.200000e-93 353.0
26 TraesCS2D01G080100 chr1B 79.855 551 51 35 1078 1592 566763881 566763355 1.020000e-91 348.0
27 TraesCS2D01G080100 chr1B 97.297 37 0 1 4799 4835 353270344 353270379 1.490000e-05 62.1
28 TraesCS2D01G080100 chr1A 83.380 355 41 12 1124 1462 582061056 582060704 3.730000e-81 313.0
29 TraesCS2D01G080100 chr1A 88.961 154 11 4 1086 1233 364020297 364020144 8.490000e-43 185.0
30 TraesCS2D01G080100 chr1A 90.476 126 12 0 1086 1211 11442090 11441965 3.070000e-37 167.0
31 TraesCS2D01G080100 chr1A 100.000 37 0 0 4799 4835 341013538 341013574 8.920000e-08 69.4
32 TraesCS2D01G080100 chr3A 83.526 346 38 14 1134 1462 642605288 642605631 6.240000e-79 305.0
33 TraesCS2D01G080100 chr6A 82.535 355 42 13 1124 1462 15396905 15397255 1.350000e-75 294.0
34 TraesCS2D01G080100 chr4D 87.556 225 16 5 1086 1301 434801288 434801509 2.970000e-62 250.0
35 TraesCS2D01G080100 chr4D 94.366 142 8 0 1086 1227 148416051 148416192 8.370000e-53 219.0
36 TraesCS2D01G080100 chr4D 89.773 88 9 0 1339 1426 434802146 434802233 4.060000e-21 113.0
37 TraesCS2D01G080100 chr6B 93.798 129 8 0 1102 1230 442429662 442429534 1.410000e-45 195.0
38 TraesCS2D01G080100 chr6B 97.368 38 1 0 4798 4835 538067472 538067509 1.150000e-06 65.8
39 TraesCS2D01G080100 chr6B 100.000 34 0 0 4803 4836 20360161 20360128 4.150000e-06 63.9
40 TraesCS2D01G080100 chr7B 91.667 108 8 1 1576 1682 43819965 43820072 1.110000e-31 148.0
41 TraesCS2D01G080100 chr7B 100.000 40 0 0 4796 4835 39554356 39554317 1.920000e-09 75.0
42 TraesCS2D01G080100 chr4A 93.182 88 6 0 1339 1426 193109016 193108929 4.030000e-26 130.0
43 TraesCS2D01G080100 chr3D 90.323 93 9 0 1086 1178 203915811 203915903 6.750000e-24 122.0
44 TraesCS2D01G080100 chr5A 93.333 75 4 1 1102 1176 422091818 422091891 5.250000e-20 110.0
45 TraesCS2D01G080100 chr6D 100.000 36 0 0 4803 4838 10765772 10765737 3.210000e-07 67.6
46 TraesCS2D01G080100 chr6D 97.222 36 1 0 4803 4838 29467343 29467378 1.490000e-05 62.1
47 TraesCS2D01G080100 chr1D 97.297 37 1 0 4803 4839 16894272 16894236 4.150000e-06 63.9
48 TraesCS2D01G080100 chr1D 100.000 34 0 0 4803 4836 142656853 142656886 4.150000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G080100 chr2D 34231135 34236098 4963 False 9167.000000 9167 100.000000 1 4964 1 chr2D.!!$F1 4963
1 TraesCS2D01G080100 chr2A 37088122 37092936 4814 False 1834.333333 4488 89.984333 1 4444 3 chr2A.!!$F1 4443
2 TraesCS2D01G080100 chr2B 56521036 56528443 7407 False 1532.333333 3639 87.867667 1 4054 3 chr2B.!!$F2 4053
3 TraesCS2D01G080100 chr2B 56623918 56625028 1110 False 405.000000 778 89.099667 3677 4778 3 chr2B.!!$F3 1101
4 TraesCS2D01G080100 chrUn 217883431 217884526 1095 False 531.500000 785 84.089500 3677 4770 2 chrUn.!!$F3 1093
5 TraesCS2D01G080100 chrUn 340697476 340701106 3630 True 531.500000 785 84.108000 3680 4776 4 chrUn.!!$R3 1096
6 TraesCS2D01G080100 chrUn 392833483 392834568 1085 True 501.000000 785 83.199000 3680 4776 2 chrUn.!!$R4 1096
7 TraesCS2D01G080100 chrUn 340507734 340508616 882 False 476.000000 785 84.786000 3677 4544 2 chrUn.!!$F4 867
8 TraesCS2D01G080100 chr7D 450003032 450003554 522 True 353.000000 353 80.109000 1080 1592 1 chr7D.!!$R1 512
9 TraesCS2D01G080100 chr1B 566763355 566763881 526 True 348.000000 348 79.855000 1078 1592 1 chr1B.!!$R1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
706 896 0.108186 TAGGCTGTTGCATCGAGTGG 60.108 55.0 0.00 0.0 41.91 4.00 F
1378 1710 0.095935 CTGCGCTTCTGTATGTGTGC 59.904 55.0 9.73 0.0 36.59 4.57 F
2657 3036 0.394192 TTATGATGCTGGCTCGGGAG 59.606 55.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1715 2079 0.025001 CACATGTCGCGAAATCGTCC 59.975 55.0 12.06 0.0 42.22 4.79 R
3244 3637 0.108804 ACCATAACGACCAGCGACTG 60.109 55.0 0.00 0.0 44.57 3.51 R
4300 8054 0.245539 CGGGGAGACGAGCAAACTAA 59.754 55.0 0.00 0.0 35.47 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 1.336056 GCGGTACATCCTCGATCCTTC 60.336 57.143 0.00 0.00 0.00 3.46
83 84 3.743521 TCTCACAGTGTTCATCTTTGGG 58.256 45.455 0.00 0.00 0.00 4.12
277 281 0.523072 CTTGTGCAAACATCCTCGGG 59.477 55.000 0.00 0.00 0.00 5.14
292 296 2.910688 TCGGGAGAGTAAATCCATGC 57.089 50.000 0.00 0.00 38.70 4.06
293 297 1.416401 TCGGGAGAGTAAATCCATGCC 59.584 52.381 0.00 0.00 38.70 4.40
295 299 2.632996 CGGGAGAGTAAATCCATGCCTA 59.367 50.000 0.00 0.00 38.70 3.93
298 302 4.534103 GGGAGAGTAAATCCATGCCTATCT 59.466 45.833 0.00 0.00 38.70 1.98
408 421 7.498239 TCATGAAGAAGAAGAGCAATAAGGATG 59.502 37.037 0.00 0.00 0.00 3.51
409 422 6.715280 TGAAGAAGAAGAGCAATAAGGATGT 58.285 36.000 0.00 0.00 0.00 3.06
410 423 6.596888 TGAAGAAGAAGAGCAATAAGGATGTG 59.403 38.462 0.00 0.00 0.00 3.21
411 424 6.059787 AGAAGAAGAGCAATAAGGATGTGT 57.940 37.500 0.00 0.00 0.00 3.72
412 425 6.479884 AGAAGAAGAGCAATAAGGATGTGTT 58.520 36.000 0.00 0.00 0.00 3.32
413 426 6.373774 AGAAGAAGAGCAATAAGGATGTGTTG 59.626 38.462 0.00 0.00 0.00 3.33
414 427 4.946157 AGAAGAGCAATAAGGATGTGTTGG 59.054 41.667 0.00 0.00 0.00 3.77
415 428 3.019564 AGAGCAATAAGGATGTGTTGGC 58.980 45.455 0.00 0.00 0.00 4.52
416 429 2.099756 GAGCAATAAGGATGTGTTGGCC 59.900 50.000 0.00 0.00 0.00 5.36
417 430 2.102578 GCAATAAGGATGTGTTGGCCT 58.897 47.619 3.32 0.00 0.00 5.19
418 431 2.159198 GCAATAAGGATGTGTTGGCCTG 60.159 50.000 3.32 0.00 31.06 4.85
419 432 1.767759 ATAAGGATGTGTTGGCCTGC 58.232 50.000 3.32 0.00 31.06 4.85
420 433 0.676466 TAAGGATGTGTTGGCCTGCG 60.676 55.000 3.32 0.00 31.06 5.18
421 434 3.443045 GGATGTGTTGGCCTGCGG 61.443 66.667 3.32 0.00 0.00 5.69
460 498 4.080299 GTCTGGACTTGGATTAGATGGGTT 60.080 45.833 0.00 0.00 0.00 4.11
491 529 3.242706 GGGTGTTGCATTGTTTTGCTTTC 60.243 43.478 0.00 0.00 43.18 2.62
503 541 2.733593 GCTTTCGACGCCTCGTGT 60.734 61.111 5.03 0.00 41.37 4.49
504 542 2.717809 GCTTTCGACGCCTCGTGTC 61.718 63.158 5.03 0.00 41.37 3.67
505 543 1.371267 CTTTCGACGCCTCGTGTCA 60.371 57.895 5.03 0.00 42.42 3.58
530 568 2.000447 GTGATGGGCGTTCTTGTAGTC 59.000 52.381 0.00 0.00 0.00 2.59
611 649 3.812053 CGAAATGAAAATTTGGTTGCCCA 59.188 39.130 0.00 0.00 39.65 5.36
626 673 1.693640 CCCACATTTGGCCCTCTCT 59.306 57.895 0.00 0.00 42.35 3.10
652 699 2.634600 TGTTTTACCAGCTTGTCGTGT 58.365 42.857 0.00 0.00 0.00 4.49
655 702 2.319136 TTACCAGCTTGTCGTGTTGT 57.681 45.000 0.00 0.00 0.00 3.32
656 703 2.319136 TACCAGCTTGTCGTGTTGTT 57.681 45.000 0.00 0.00 0.00 2.83
661 708 2.080693 AGCTTGTCGTGTTGTTTGTCA 58.919 42.857 0.00 0.00 0.00 3.58
688 878 6.795098 AGTTTTGTATCATCGTTTGCTGTA 57.205 33.333 0.00 0.00 0.00 2.74
696 886 1.225855 TCGTTTGCTGTAGGCTGTTG 58.774 50.000 0.00 0.00 42.39 3.33
697 887 0.385974 CGTTTGCTGTAGGCTGTTGC 60.386 55.000 0.00 0.00 42.39 4.17
698 888 0.667993 GTTTGCTGTAGGCTGTTGCA 59.332 50.000 0.00 1.24 42.39 4.08
699 889 1.270550 GTTTGCTGTAGGCTGTTGCAT 59.729 47.619 0.00 0.00 42.39 3.96
700 890 1.167851 TTGCTGTAGGCTGTTGCATC 58.832 50.000 0.00 0.00 42.39 3.91
701 891 1.020861 TGCTGTAGGCTGTTGCATCG 61.021 55.000 0.00 0.00 42.39 3.84
702 892 0.740868 GCTGTAGGCTGTTGCATCGA 60.741 55.000 0.00 0.00 41.91 3.59
703 893 1.284657 CTGTAGGCTGTTGCATCGAG 58.715 55.000 0.00 0.00 41.91 4.04
704 894 0.608130 TGTAGGCTGTTGCATCGAGT 59.392 50.000 0.00 0.00 41.91 4.18
705 895 1.002366 GTAGGCTGTTGCATCGAGTG 58.998 55.000 0.00 0.00 41.91 3.51
706 896 0.108186 TAGGCTGTTGCATCGAGTGG 60.108 55.000 0.00 0.00 41.91 4.00
707 897 1.672356 GGCTGTTGCATCGAGTGGT 60.672 57.895 0.00 0.00 41.91 4.16
708 898 1.639298 GGCTGTTGCATCGAGTGGTC 61.639 60.000 0.00 0.00 41.91 4.02
709 899 1.959899 GCTGTTGCATCGAGTGGTCG 61.960 60.000 0.00 0.00 42.55 4.79
710 900 1.354337 CTGTTGCATCGAGTGGTCGG 61.354 60.000 0.00 0.00 46.80 4.79
711 901 2.434185 TTGCATCGAGTGGTCGGC 60.434 61.111 0.00 0.00 46.80 5.54
712 902 2.942796 TTGCATCGAGTGGTCGGCT 61.943 57.895 0.00 0.00 46.80 5.52
713 903 2.887568 GCATCGAGTGGTCGGCTG 60.888 66.667 0.00 0.00 46.80 4.85
714 904 2.573869 CATCGAGTGGTCGGCTGT 59.426 61.111 0.00 0.00 46.80 4.40
715 905 1.807165 CATCGAGTGGTCGGCTGTG 60.807 63.158 0.00 0.00 46.80 3.66
716 906 3.649277 ATCGAGTGGTCGGCTGTGC 62.649 63.158 0.00 0.00 46.80 4.57
717 907 4.662961 CGAGTGGTCGGCTGTGCA 62.663 66.667 0.00 0.00 42.87 4.57
718 908 2.046892 GAGTGGTCGGCTGTGCAT 60.047 61.111 0.00 0.00 0.00 3.96
719 909 2.046892 AGTGGTCGGCTGTGCATC 60.047 61.111 0.00 0.00 0.00 3.91
720 910 3.490759 GTGGTCGGCTGTGCATCG 61.491 66.667 0.00 0.00 0.00 3.84
721 911 4.758251 TGGTCGGCTGTGCATCGG 62.758 66.667 0.00 0.00 0.00 4.18
784 1066 4.170062 CGGCAGCATCGTGGCAAG 62.170 66.667 0.00 0.00 43.10 4.01
785 1067 4.487412 GGCAGCATCGTGGCAAGC 62.487 66.667 0.00 6.84 42.50 4.01
786 1068 3.740397 GCAGCATCGTGGCAAGCA 61.740 61.111 0.00 0.00 37.14 3.91
787 1069 2.956194 CAGCATCGTGGCAAGCAA 59.044 55.556 0.00 0.00 35.83 3.91
788 1070 1.154093 CAGCATCGTGGCAAGCAAG 60.154 57.895 0.00 0.00 35.83 4.01
789 1071 1.302752 AGCATCGTGGCAAGCAAGA 60.303 52.632 0.00 0.00 35.83 3.02
790 1072 1.154150 GCATCGTGGCAAGCAAGAC 60.154 57.895 0.00 0.00 0.00 3.01
791 1073 1.855213 GCATCGTGGCAAGCAAGACA 61.855 55.000 0.00 0.00 0.00 3.41
792 1074 0.167470 CATCGTGGCAAGCAAGACAG 59.833 55.000 0.00 0.00 0.00 3.51
793 1075 0.250467 ATCGTGGCAAGCAAGACAGT 60.250 50.000 0.00 0.00 0.00 3.55
794 1076 0.391228 TCGTGGCAAGCAAGACAGTA 59.609 50.000 0.00 0.00 0.00 2.74
795 1077 0.512952 CGTGGCAAGCAAGACAGTAC 59.487 55.000 0.00 0.00 0.00 2.73
807 1091 4.960354 GCAAGACAGTACTACATACGTACG 59.040 45.833 15.01 15.01 41.51 3.67
808 1092 5.220472 GCAAGACAGTACTACATACGTACGA 60.220 44.000 24.41 6.04 41.51 3.43
818 1102 3.609853 ACATACGTACGACCTACTCCAA 58.390 45.455 24.41 0.00 0.00 3.53
891 1176 4.985413 TCGAGCTGCAAAAATGGAATTAG 58.015 39.130 1.02 0.00 33.67 1.73
941 1226 1.977009 GGAAGGGCCGGAAAACCAG 60.977 63.158 5.05 0.00 0.00 4.00
942 1227 2.600470 AAGGGCCGGAAAACCAGC 60.600 61.111 5.05 0.00 0.00 4.85
943 1228 3.444818 AAGGGCCGGAAAACCAGCA 62.445 57.895 5.05 0.00 0.00 4.41
944 1229 2.915137 GGGCCGGAAAACCAGCAA 60.915 61.111 5.05 0.00 0.00 3.91
945 1230 2.650778 GGCCGGAAAACCAGCAAG 59.349 61.111 5.05 0.00 0.00 4.01
946 1231 2.650778 GCCGGAAAACCAGCAAGG 59.349 61.111 5.05 0.00 45.67 3.61
947 1232 2.931068 GCCGGAAAACCAGCAAGGG 61.931 63.158 5.05 0.00 43.89 3.95
948 1233 2.650778 CGGAAAACCAGCAAGGGC 59.349 61.111 0.04 0.00 43.89 5.19
983 1268 2.780693 CTCCCTCCCTCCACTCCA 59.219 66.667 0.00 0.00 0.00 3.86
987 1272 3.077556 CTCCCTCCACTCCACCCG 61.078 72.222 0.00 0.00 0.00 5.28
1097 1384 2.759114 CACCAGTCCACCATGGCT 59.241 61.111 13.04 0.00 40.45 4.75
1101 1388 4.415150 AGTCCACCATGGCTGCCG 62.415 66.667 13.04 1.99 37.47 5.69
1267 1573 3.998672 GGGTGACGGCGAGGACAA 61.999 66.667 16.62 0.00 0.00 3.18
1270 1576 4.351938 TGACGGCGAGGACAACGG 62.352 66.667 16.62 0.00 0.00 4.44
1271 1577 4.047059 GACGGCGAGGACAACGGA 62.047 66.667 16.62 0.00 0.00 4.69
1272 1578 4.353437 ACGGCGAGGACAACGGAC 62.353 66.667 16.62 0.00 0.00 4.79
1274 1580 4.754667 GGCGAGGACAACGGACCC 62.755 72.222 0.00 0.00 0.00 4.46
1378 1710 0.095935 CTGCGCTTCTGTATGTGTGC 59.904 55.000 9.73 0.00 36.59 4.57
1477 1813 4.487412 GTCGCGTACCAGGTCCGG 62.487 72.222 5.77 0.00 0.00 5.14
1503 1842 4.540099 TCTCTCCTCCTCTCTTCTTCTTCT 59.460 45.833 0.00 0.00 0.00 2.85
1726 2090 1.002468 CAATCCATGGGACGATTTCGC 60.002 52.381 13.02 0.00 44.43 4.70
1739 2103 2.697363 GATTTCGCGACATGTGTCATG 58.303 47.619 13.32 7.99 44.99 3.07
1741 2114 0.789601 TTCGCGACATGTGTCATGTG 59.210 50.000 9.15 11.92 44.99 3.21
1747 2120 2.286891 CGACATGTGTCATGTGTTGCAA 60.287 45.455 18.09 0.00 44.99 4.08
1757 2130 3.068448 TCATGTGTTGCAATGCTGAAACT 59.932 39.130 6.82 0.00 41.23 2.66
1772 2145 4.872691 GCTGAAACTATCACAGTATGCACT 59.127 41.667 0.00 0.00 42.53 4.40
1773 2146 5.006165 GCTGAAACTATCACAGTATGCACTC 59.994 44.000 0.00 0.00 42.53 3.51
1776 2149 6.368791 TGAAACTATCACAGTATGCACTCAAC 59.631 38.462 0.00 0.00 42.53 3.18
1780 2153 3.253230 TCACAGTATGCACTCAACGATG 58.747 45.455 0.00 0.00 42.53 3.84
1784 2157 3.305361 CAGTATGCACTCAACGATGTCTG 59.695 47.826 0.00 0.00 30.46 3.51
1785 2158 1.081892 ATGCACTCAACGATGTCTGC 58.918 50.000 9.34 9.34 33.42 4.26
1787 2160 1.272212 TGCACTCAACGATGTCTGCTA 59.728 47.619 14.74 3.65 33.74 3.49
1880 2253 4.864704 TTTTGATTTGAACACCCCTAGC 57.135 40.909 0.00 0.00 0.00 3.42
2055 2430 1.376683 GCACATTGTGGGCGAGGTA 60.377 57.895 18.05 0.00 36.87 3.08
2148 2523 2.765352 CCCTCAGGTGAGTTGGACT 58.235 57.895 6.25 0.00 40.48 3.85
2199 2574 6.403866 TTGATTCACCTGTTTAAATGCTGT 57.596 33.333 0.00 0.00 0.00 4.40
2200 2575 6.403866 TGATTCACCTGTTTAAATGCTGTT 57.596 33.333 0.00 0.00 0.00 3.16
2201 2576 6.446318 TGATTCACCTGTTTAAATGCTGTTC 58.554 36.000 0.00 0.00 0.00 3.18
2202 2577 4.846779 TCACCTGTTTAAATGCTGTTCC 57.153 40.909 0.00 0.00 0.00 3.62
2203 2578 3.572255 TCACCTGTTTAAATGCTGTTCCC 59.428 43.478 0.00 0.00 0.00 3.97
2205 2580 4.039124 CACCTGTTTAAATGCTGTTCCCTT 59.961 41.667 0.00 0.00 0.00 3.95
2206 2581 4.653801 ACCTGTTTAAATGCTGTTCCCTTT 59.346 37.500 0.00 0.00 0.00 3.11
2207 2582 5.221441 ACCTGTTTAAATGCTGTTCCCTTTC 60.221 40.000 0.00 0.00 0.00 2.62
2209 2584 6.084326 TGTTTAAATGCTGTTCCCTTTCTC 57.916 37.500 0.00 0.00 0.00 2.87
2210 2585 5.596361 TGTTTAAATGCTGTTCCCTTTCTCA 59.404 36.000 0.00 0.00 0.00 3.27
2211 2586 5.705609 TTAAATGCTGTTCCCTTTCTCAC 57.294 39.130 0.00 0.00 0.00 3.51
2248 2626 2.425773 GCGCAGTGTGAGCAAACG 60.426 61.111 8.15 0.00 42.85 3.60
2372 2750 5.065218 TGCTCTTCACTTCTTTGTCTTTGTC 59.935 40.000 0.00 0.00 0.00 3.18
2383 2761 2.838736 TGTCTTTGTCAGCAGGAGTTC 58.161 47.619 0.00 0.00 0.00 3.01
2466 2844 4.083057 GCAGAAGAAAATCTCCAAGACACC 60.083 45.833 0.00 0.00 0.00 4.16
2485 2863 2.639286 CTGCCGTTGCCAGTTCAC 59.361 61.111 0.00 0.00 36.33 3.18
2569 2947 7.724287 TCATTCTGAACCTCTAAGAGATCATG 58.276 38.462 0.00 0.00 29.85 3.07
2574 2952 7.068103 TCTGAACCTCTAAGAGATCATGTTCTC 59.932 40.741 21.41 21.41 42.08 2.87
2591 2970 8.236586 TCATGTTCTCTTTTTATTCATGGAACG 58.763 33.333 0.00 0.00 35.87 3.95
2595 2974 8.508875 GTTCTCTTTTTATTCATGGAACGGTAA 58.491 33.333 0.00 0.00 0.00 2.85
2621 3000 6.867550 TCACCTCTTTATATAGGATGATGCG 58.132 40.000 0.00 0.00 36.66 4.73
2639 3018 3.345414 TGCGGATAATGTAACCCGTTTT 58.655 40.909 0.00 0.00 43.51 2.43
2657 3036 0.394192 TTATGATGCTGGCTCGGGAG 59.606 55.000 0.00 0.00 0.00 4.30
2698 3077 4.823989 AGATAAGCCATTCAAGGTATGTGC 59.176 41.667 0.00 0.00 0.00 4.57
2749 3129 1.485124 CCCCTTTCCTGGTAAATGCC 58.515 55.000 0.00 0.00 0.00 4.40
2929 3309 1.577468 TTTCGTCAACACTCATGCGT 58.423 45.000 0.00 0.00 0.00 5.24
2949 3329 3.248363 CGTGTTTGAAGCAGAACTGATCA 59.752 43.478 5.97 0.00 0.00 2.92
2960 3340 1.326852 GAACTGATCAGTGCTGCATCG 59.673 52.381 28.52 0.00 41.58 3.84
2961 3341 0.461516 ACTGATCAGTGCTGCATCGG 60.462 55.000 27.37 6.94 40.75 4.18
3012 3392 1.610522 CCACACAAGAAAAGGCCTCTG 59.389 52.381 5.23 1.13 0.00 3.35
3122 3515 8.528917 TGCACGGAAACTGTATTGTATATATC 57.471 34.615 0.00 0.00 0.00 1.63
3186 3579 4.978083 TTTCTACGTAGATTTCGAGGCT 57.022 40.909 25.17 0.00 31.40 4.58
3244 3637 9.059260 TCAGTAACTTAAAGGTGTGGTTTTATC 57.941 33.333 0.00 0.00 0.00 1.75
3245 3638 8.842280 CAGTAACTTAAAGGTGTGGTTTTATCA 58.158 33.333 0.00 0.00 0.00 2.15
3246 3639 9.063615 AGTAACTTAAAGGTGTGGTTTTATCAG 57.936 33.333 0.00 0.00 0.00 2.90
3247 3640 7.891498 AACTTAAAGGTGTGGTTTTATCAGT 57.109 32.000 0.00 0.00 0.00 3.41
3248 3641 7.506328 ACTTAAAGGTGTGGTTTTATCAGTC 57.494 36.000 0.00 0.00 0.00 3.51
3249 3642 6.204108 ACTTAAAGGTGTGGTTTTATCAGTCG 59.796 38.462 0.00 0.00 0.00 4.18
3250 3643 2.423577 AGGTGTGGTTTTATCAGTCGC 58.576 47.619 0.00 0.00 0.00 5.19
3257 3650 2.334838 GTTTTATCAGTCGCTGGTCGT 58.665 47.619 6.95 0.00 39.67 4.34
3285 3682 1.621317 TGGTGGTTAAGTGAGCGATGA 59.379 47.619 0.00 0.00 0.00 2.92
3288 3685 2.924290 GTGGTTAAGTGAGCGATGACTC 59.076 50.000 0.00 0.00 37.19 3.36
3296 3693 2.530177 TGAGCGATGACTCAATTCGTC 58.470 47.619 4.43 0.00 43.59 4.20
3308 3705 6.049263 ACTCAATTCGTCTCTGTTTTTGTC 57.951 37.500 0.00 0.00 0.00 3.18
3349 3746 3.583086 CCACCTTCCTAAGAGTTCTTGGA 59.417 47.826 6.79 7.59 36.68 3.53
3370 3767 3.231207 AGCTATCCTACCGATGTCACT 57.769 47.619 0.00 0.00 31.92 3.41
3422 3819 6.566079 ACAGAAATCATCCCTTGATAGTCA 57.434 37.500 0.00 0.00 44.51 3.41
3530 3927 0.990818 ATCTTCCTGGGGGCTTCTCC 60.991 60.000 0.00 0.00 0.00 3.71
3590 3987 8.690203 TCTTTATTTTCCTGTGAATGTGAGAA 57.310 30.769 0.00 0.00 0.00 2.87
3592 3989 9.748708 CTTTATTTTCCTGTGAATGTGAGAAAA 57.251 29.630 0.00 0.00 37.54 2.29
3630 4027 8.961294 ATATATATCTTTTGCATGAGAGCTCC 57.039 34.615 10.93 2.40 34.99 4.70
3639 4037 5.045012 TGCATGAGAGCTCCTGAAATATT 57.955 39.130 10.93 0.00 34.99 1.28
3678 4094 4.404073 AGGAGTACTTGCTGGAGAATAGTG 59.596 45.833 0.00 0.00 0.00 2.74
3692 4108 6.763135 TGGAGAATAGTGTTGAATAGTGATGC 59.237 38.462 0.00 0.00 0.00 3.91
3742 4158 8.458573 AAGTGTGATGTTTATGTTTGAGGTTA 57.541 30.769 0.00 0.00 0.00 2.85
3756 4208 4.787260 TGAGGTTACAGTAATGCGTGTA 57.213 40.909 0.00 0.00 0.00 2.90
3882 7583 2.162408 GCCATGGTAGCAGTCAGAAAAC 59.838 50.000 14.67 0.00 0.00 2.43
4050 7786 5.339008 TTCAACTACTATTCACGGCTGAT 57.661 39.130 0.00 0.00 0.00 2.90
4179 7933 5.300969 AGCATTGTGTGTGATGTTATGAC 57.699 39.130 0.00 0.00 0.00 3.06
4264 8018 3.179830 GTGGTATGCGTGTAGAGACAAG 58.820 50.000 0.00 0.00 37.31 3.16
4274 8028 4.618460 CGTGTAGAGACAAGGTGCATTACT 60.618 45.833 0.00 0.00 37.31 2.24
4275 8029 5.238583 GTGTAGAGACAAGGTGCATTACTT 58.761 41.667 0.00 0.00 37.31 2.24
4276 8030 5.701290 GTGTAGAGACAAGGTGCATTACTTT 59.299 40.000 0.00 0.00 37.31 2.66
4277 8031 6.872020 GTGTAGAGACAAGGTGCATTACTTTA 59.128 38.462 0.00 0.00 37.31 1.85
4278 8032 6.872020 TGTAGAGACAAGGTGCATTACTTTAC 59.128 38.462 0.00 0.00 30.68 2.01
4279 8033 5.246307 AGAGACAAGGTGCATTACTTTACC 58.754 41.667 0.00 0.00 0.00 2.85
4280 8034 4.980573 AGACAAGGTGCATTACTTTACCA 58.019 39.130 0.00 0.00 35.66 3.25
4281 8035 5.381757 AGACAAGGTGCATTACTTTACCAA 58.618 37.500 0.00 0.00 35.66 3.67
4282 8036 5.473504 AGACAAGGTGCATTACTTTACCAAG 59.526 40.000 0.00 0.00 35.66 3.61
4283 8037 5.381757 ACAAGGTGCATTACTTTACCAAGA 58.618 37.500 0.00 0.00 35.66 3.02
4284 8038 5.830991 ACAAGGTGCATTACTTTACCAAGAA 59.169 36.000 0.00 0.00 35.66 2.52
4285 8039 6.322712 ACAAGGTGCATTACTTTACCAAGAAA 59.677 34.615 0.00 0.00 35.66 2.52
4286 8040 6.969993 AGGTGCATTACTTTACCAAGAAAA 57.030 33.333 0.00 0.00 35.66 2.29
4287 8041 7.539034 AGGTGCATTACTTTACCAAGAAAAT 57.461 32.000 0.00 0.00 35.66 1.82
4288 8042 8.644374 AGGTGCATTACTTTACCAAGAAAATA 57.356 30.769 0.00 0.00 35.66 1.40
4289 8043 9.255029 AGGTGCATTACTTTACCAAGAAAATAT 57.745 29.630 0.00 0.00 35.66 1.28
4290 8044 9.869757 GGTGCATTACTTTACCAAGAAAATATT 57.130 29.630 0.00 0.00 33.72 1.28
4296 8050 7.252612 ACTTTACCAAGAAAATATTTGGGGG 57.747 36.000 0.39 4.45 46.43 5.40
4297 8051 7.020009 ACTTTACCAAGAAAATATTTGGGGGA 58.980 34.615 0.39 0.00 46.43 4.81
4298 8052 7.682459 ACTTTACCAAGAAAATATTTGGGGGAT 59.318 33.333 0.39 0.00 46.43 3.85
4299 8053 5.955961 ACCAAGAAAATATTTGGGGGATG 57.044 39.130 0.39 0.00 46.43 3.51
4300 8054 5.349690 ACCAAGAAAATATTTGGGGGATGT 58.650 37.500 0.39 0.00 46.43 3.06
4301 8055 5.790096 ACCAAGAAAATATTTGGGGGATGTT 59.210 36.000 0.39 0.00 46.43 2.71
4302 8056 6.962902 ACCAAGAAAATATTTGGGGGATGTTA 59.037 34.615 0.39 0.00 46.43 2.41
4303 8057 7.125659 ACCAAGAAAATATTTGGGGGATGTTAG 59.874 37.037 0.39 0.00 46.43 2.34
4304 8058 7.125659 CCAAGAAAATATTTGGGGGATGTTAGT 59.874 37.037 0.39 0.00 40.11 2.24
4305 8059 8.539544 CAAGAAAATATTTGGGGGATGTTAGTT 58.460 33.333 0.39 0.00 0.00 2.24
4306 8060 8.679344 AGAAAATATTTGGGGGATGTTAGTTT 57.321 30.769 0.39 0.00 0.00 2.66
4307 8061 8.539544 AGAAAATATTTGGGGGATGTTAGTTTG 58.460 33.333 0.39 0.00 0.00 2.93
4308 8062 5.869649 ATATTTGGGGGATGTTAGTTTGC 57.130 39.130 0.00 0.00 0.00 3.68
4316 8070 2.930682 GGATGTTAGTTTGCTCGTCTCC 59.069 50.000 0.00 0.00 0.00 3.71
4317 8071 2.450609 TGTTAGTTTGCTCGTCTCCC 57.549 50.000 0.00 0.00 0.00 4.30
4345 8305 3.501445 AGAAATTCTTGACTGCTCAGCAC 59.499 43.478 0.00 0.00 33.79 4.40
4352 8312 3.614659 CTGCTCAGCACGATCGCG 61.615 66.667 16.60 6.95 44.79 5.87
4424 8387 6.460261 CCATGCGTAGGTCAATAGATATCGAT 60.460 42.308 2.16 2.16 0.00 3.59
4426 8389 5.163652 TGCGTAGGTCAATAGATATCGATGG 60.164 44.000 8.54 0.00 0.00 3.51
4446 8412 0.105408 AACTCGCACCCGTAAGTGTT 59.895 50.000 0.00 0.00 40.04 3.32
4452 8418 1.607251 GCACCCGTAAGTGTTGCTACT 60.607 52.381 0.00 0.00 40.04 2.57
4462 8428 6.238103 CGTAAGTGTTGCTACTCATATTTGGG 60.238 42.308 0.00 0.00 0.00 4.12
4466 8432 1.765904 TGCTACTCATATTTGGGCCGA 59.234 47.619 0.00 0.00 0.00 5.54
4483 8449 2.998670 GCCGACCCAACTAGAAACTTAC 59.001 50.000 0.00 0.00 0.00 2.34
4486 8452 4.503643 CCGACCCAACTAGAAACTTACCAA 60.504 45.833 0.00 0.00 0.00 3.67
4488 8454 5.528320 CGACCCAACTAGAAACTTACCAAAA 59.472 40.000 0.00 0.00 0.00 2.44
4489 8455 6.038492 CGACCCAACTAGAAACTTACCAAAAA 59.962 38.462 0.00 0.00 0.00 1.94
4490 8456 7.342769 ACCCAACTAGAAACTTACCAAAAAG 57.657 36.000 0.00 0.00 0.00 2.27
4491 8457 6.322969 ACCCAACTAGAAACTTACCAAAAAGG 59.677 38.462 0.00 0.00 45.67 3.11
4511 8477 5.319140 AGGTATTTTTGTAATGCGGGAAC 57.681 39.130 0.00 0.00 0.00 3.62
4518 11017 6.532365 TTTTGTAATGCGGGAACATTTTTC 57.468 33.333 0.00 0.00 40.64 2.29
4519 11018 3.827625 TGTAATGCGGGAACATTTTTCG 58.172 40.909 0.00 0.00 40.64 3.46
4522 11021 2.409152 TGCGGGAACATTTTTCGAAC 57.591 45.000 0.00 0.00 0.00 3.95
4534 11033 6.758254 ACATTTTTCGAACCCATGATCTTTT 58.242 32.000 14.40 0.00 0.00 2.27
4536 11035 7.384932 ACATTTTTCGAACCCATGATCTTTTTC 59.615 33.333 14.40 0.00 0.00 2.29
4537 11036 6.648879 TTTTCGAACCCATGATCTTTTTCT 57.351 33.333 0.00 0.00 0.00 2.52
4542 11041 8.172352 TCGAACCCATGATCTTTTTCTAAAAA 57.828 30.769 0.00 1.05 36.53 1.94
4714 11221 5.285651 ACATCAGAGAAGCTCGTAATTAGC 58.714 41.667 0.00 0.00 40.40 3.09
4723 11230 3.564644 AGCTCGTAATTAGCGCTCTCTAA 59.435 43.478 16.34 1.93 44.87 2.10
4735 11242 2.872858 CGCTCTCTAACCTTATTTGGGC 59.127 50.000 0.00 0.00 0.00 5.36
4736 11243 3.215151 GCTCTCTAACCTTATTTGGGCC 58.785 50.000 0.00 0.00 0.00 5.80
4775 11282 2.203437 GGGGAACGGTGCTGGTTT 60.203 61.111 0.00 0.00 0.00 3.27
4776 11283 2.561037 GGGGAACGGTGCTGGTTTG 61.561 63.158 0.00 0.00 0.00 2.93
4777 11284 1.826487 GGGAACGGTGCTGGTTTGT 60.826 57.895 0.00 0.00 0.00 2.83
4778 11285 1.358759 GGAACGGTGCTGGTTTGTG 59.641 57.895 0.00 0.00 0.00 3.33
4779 11286 1.381165 GGAACGGTGCTGGTTTGTGT 61.381 55.000 0.00 0.00 0.00 3.72
4780 11287 0.028902 GAACGGTGCTGGTTTGTGTC 59.971 55.000 0.00 0.00 0.00 3.67
4781 11288 0.393808 AACGGTGCTGGTTTGTGTCT 60.394 50.000 0.00 0.00 0.00 3.41
4782 11289 0.393808 ACGGTGCTGGTTTGTGTCTT 60.394 50.000 0.00 0.00 0.00 3.01
4783 11290 0.029300 CGGTGCTGGTTTGTGTCTTG 59.971 55.000 0.00 0.00 0.00 3.02
4784 11291 0.249031 GGTGCTGGTTTGTGTCTTGC 60.249 55.000 0.00 0.00 0.00 4.01
4785 11292 0.740737 GTGCTGGTTTGTGTCTTGCT 59.259 50.000 0.00 0.00 0.00 3.91
4786 11293 1.134946 GTGCTGGTTTGTGTCTTGCTT 59.865 47.619 0.00 0.00 0.00 3.91
4787 11294 2.357637 GTGCTGGTTTGTGTCTTGCTTA 59.642 45.455 0.00 0.00 0.00 3.09
4788 11295 2.618241 TGCTGGTTTGTGTCTTGCTTAG 59.382 45.455 0.00 0.00 0.00 2.18
4789 11296 2.878406 GCTGGTTTGTGTCTTGCTTAGA 59.122 45.455 0.00 0.00 0.00 2.10
4790 11297 3.058639 GCTGGTTTGTGTCTTGCTTAGAG 60.059 47.826 0.00 0.00 32.23 2.43
4791 11298 2.878406 TGGTTTGTGTCTTGCTTAGAGC 59.122 45.455 0.00 0.00 42.82 4.09
4792 11299 2.096218 GGTTTGTGTCTTGCTTAGAGCG 60.096 50.000 0.00 0.00 46.26 5.03
4793 11300 2.800544 GTTTGTGTCTTGCTTAGAGCGA 59.199 45.455 0.00 0.00 46.26 4.93
4801 11308 3.402628 TTGCTTAGAGCGAGACCTTTT 57.597 42.857 0.00 0.00 46.26 2.27
4802 11309 3.402628 TGCTTAGAGCGAGACCTTTTT 57.597 42.857 0.00 0.00 46.26 1.94
4825 11332 7.475771 TTTTTGATTTTGCTAACCACATGTC 57.524 32.000 0.00 0.00 0.00 3.06
4826 11333 4.782019 TGATTTTGCTAACCACATGTCC 57.218 40.909 0.00 0.00 0.00 4.02
4827 11334 3.509575 TGATTTTGCTAACCACATGTCCC 59.490 43.478 0.00 0.00 0.00 4.46
4828 11335 2.666272 TTTGCTAACCACATGTCCCA 57.334 45.000 0.00 0.00 0.00 4.37
4829 11336 2.897271 TTGCTAACCACATGTCCCAT 57.103 45.000 0.00 0.00 0.00 4.00
4830 11337 2.127271 TGCTAACCACATGTCCCATG 57.873 50.000 0.00 2.77 0.00 3.66
4831 11338 0.740737 GCTAACCACATGTCCCATGC 59.259 55.000 0.00 0.00 0.00 4.06
4832 11339 1.016627 CTAACCACATGTCCCATGCG 58.983 55.000 0.00 0.00 0.00 4.73
4833 11340 0.393673 TAACCACATGTCCCATGCGG 60.394 55.000 9.19 9.19 0.00 5.69
4834 11341 2.045045 CCACATGTCCCATGCGGT 60.045 61.111 0.00 0.00 0.00 5.68
4835 11342 2.409055 CCACATGTCCCATGCGGTG 61.409 63.158 0.00 0.00 0.00 4.94
4843 11350 4.131376 CCATGCGGTGGCTTAGAG 57.869 61.111 0.00 0.00 42.12 2.43
4844 11351 2.182842 CCATGCGGTGGCTTAGAGC 61.183 63.158 0.00 0.00 42.12 4.09
4845 11352 2.202932 ATGCGGTGGCTTAGAGCG 60.203 61.111 0.00 0.00 43.62 5.03
4846 11353 2.721167 ATGCGGTGGCTTAGAGCGA 61.721 57.895 0.00 0.00 43.62 4.93
4847 11354 2.583593 GCGGTGGCTTAGAGCGAG 60.584 66.667 0.00 0.00 43.62 5.03
4848 11355 3.064987 GCGGTGGCTTAGAGCGAGA 62.065 63.158 0.00 0.00 43.62 4.04
4849 11356 1.226717 CGGTGGCTTAGAGCGAGAC 60.227 63.158 0.00 0.00 43.62 3.36
4850 11357 1.142097 GGTGGCTTAGAGCGAGACC 59.858 63.158 0.00 0.00 43.62 3.85
4851 11358 1.324005 GGTGGCTTAGAGCGAGACCT 61.324 60.000 0.00 0.00 43.62 3.85
4852 11359 1.390565 GTGGCTTAGAGCGAGACCTA 58.609 55.000 0.00 0.00 43.62 3.08
4853 11360 1.335496 GTGGCTTAGAGCGAGACCTAG 59.665 57.143 0.00 0.00 43.62 3.02
4854 11361 0.955905 GGCTTAGAGCGAGACCTAGG 59.044 60.000 7.41 7.41 43.62 3.02
4855 11362 0.955905 GCTTAGAGCGAGACCTAGGG 59.044 60.000 14.81 0.00 0.00 3.53
4856 11363 1.477195 GCTTAGAGCGAGACCTAGGGA 60.477 57.143 14.81 0.00 0.00 4.20
4857 11364 2.500229 CTTAGAGCGAGACCTAGGGAG 58.500 57.143 14.81 2.17 0.00 4.30
4858 11365 0.108963 TAGAGCGAGACCTAGGGAGC 59.891 60.000 14.81 12.36 0.00 4.70
4859 11366 2.123640 AGCGAGACCTAGGGAGCC 60.124 66.667 14.81 0.00 0.00 4.70
4860 11367 3.228017 GCGAGACCTAGGGAGCCC 61.228 72.222 14.81 0.00 0.00 5.19
4862 11369 1.529713 CGAGACCTAGGGAGCCCTC 60.530 68.421 12.24 9.95 44.43 4.30
4863 11370 1.529713 GAGACCTAGGGAGCCCTCG 60.530 68.421 12.24 5.66 44.43 4.63
4864 11371 3.228017 GACCTAGGGAGCCCTCGC 61.228 72.222 12.24 0.00 44.43 5.03
4867 11374 3.905678 CTAGGGAGCCCTCGCGTG 61.906 72.222 12.24 2.75 44.43 5.34
4868 11375 4.435970 TAGGGAGCCCTCGCGTGA 62.436 66.667 12.24 0.00 44.43 4.35
4869 11376 3.949885 TAGGGAGCCCTCGCGTGAA 62.950 63.158 12.24 0.00 44.43 3.18
4870 11377 4.162690 GGGAGCCCTCGCGTGAAT 62.163 66.667 10.21 0.00 41.18 2.57
4871 11378 2.892425 GGAGCCCTCGCGTGAATG 60.892 66.667 10.21 0.00 41.18 2.67
4872 11379 2.892425 GAGCCCTCGCGTGAATGG 60.892 66.667 10.21 4.94 41.18 3.16
4873 11380 4.473520 AGCCCTCGCGTGAATGGG 62.474 66.667 16.95 16.95 41.18 4.00
4874 11381 4.467084 GCCCTCGCGTGAATGGGA 62.467 66.667 23.65 0.00 42.11 4.37
4875 11382 2.202932 CCCTCGCGTGAATGGGAG 60.203 66.667 16.41 9.10 45.59 4.30
4876 11383 2.892425 CCTCGCGTGAATGGGAGC 60.892 66.667 10.21 0.00 44.90 4.70
4877 11384 2.892425 CTCGCGTGAATGGGAGCC 60.892 66.667 5.77 0.00 41.24 4.70
4878 11385 4.467084 TCGCGTGAATGGGAGCCC 62.467 66.667 5.77 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.038763 TGTGAGAACCCATAATAGGCTACG 59.961 45.833 0.00 0.00 0.00 3.51
83 84 6.596106 TCACACACATTACATTGGTATGGTAC 59.404 38.462 5.58 0.00 36.01 3.34
98 102 2.355513 GGCCTCTCAGATCACACACATT 60.356 50.000 0.00 0.00 0.00 2.71
274 278 1.417890 AGGCATGGATTTACTCTCCCG 59.582 52.381 0.00 0.00 31.32 5.14
277 281 8.317679 ACAATAGATAGGCATGGATTTACTCTC 58.682 37.037 0.00 0.00 0.00 3.20
292 296 7.645340 CGCCAAATCTGAAAAACAATAGATAGG 59.355 37.037 0.00 0.00 32.50 2.57
293 297 8.397906 TCGCCAAATCTGAAAAACAATAGATAG 58.602 33.333 0.00 0.00 30.19 2.08
295 299 7.156876 TCGCCAAATCTGAAAAACAATAGAT 57.843 32.000 0.00 0.00 0.00 1.98
298 302 5.708948 CCTCGCCAAATCTGAAAAACAATA 58.291 37.500 0.00 0.00 0.00 1.90
416 429 1.588824 AACACATGACATGGCCGCAG 61.589 55.000 19.39 4.91 33.60 5.18
417 430 1.177895 AAACACATGACATGGCCGCA 61.178 50.000 19.39 0.00 33.60 5.69
418 431 0.733566 CAAACACATGACATGGCCGC 60.734 55.000 19.39 0.00 33.60 6.53
419 432 0.597568 ACAAACACATGACATGGCCG 59.402 50.000 19.39 9.78 33.60 6.13
420 433 1.888512 AGACAAACACATGACATGGCC 59.111 47.619 19.39 0.00 33.60 5.36
421 434 2.352030 CCAGACAAACACATGACATGGC 60.352 50.000 19.39 0.00 33.60 4.40
422 435 3.058016 GTCCAGACAAACACATGACATGG 60.058 47.826 19.39 10.68 33.60 3.66
423 436 3.817084 AGTCCAGACAAACACATGACATG 59.183 43.478 14.02 14.02 0.00 3.21
424 437 4.090761 AGTCCAGACAAACACATGACAT 57.909 40.909 0.00 0.00 0.00 3.06
425 438 3.558931 AGTCCAGACAAACACATGACA 57.441 42.857 0.00 0.00 0.00 3.58
460 498 2.033448 GCAACACCCCATCGACCA 59.967 61.111 0.00 0.00 0.00 4.02
505 543 2.086869 CAAGAACGCCCATCACAAGAT 58.913 47.619 0.00 0.00 33.87 2.40
521 559 5.302059 ACACTTAGCAGTTCAGACTACAAGA 59.698 40.000 0.00 0.00 33.90 3.02
530 568 7.063544 GGAACTACATAACACTTAGCAGTTCAG 59.936 40.741 11.82 0.00 41.39 3.02
611 649 0.773644 ACACAGAGAGGGCCAAATGT 59.226 50.000 6.18 1.63 0.00 2.71
621 659 4.576463 AGCTGGTAAAACAAACACAGAGAG 59.424 41.667 0.00 0.00 0.00 3.20
626 673 4.673061 CGACAAGCTGGTAAAACAAACACA 60.673 41.667 0.00 0.00 0.00 3.72
652 699 7.561021 TGATACAAAACTAGCTGACAAACAA 57.439 32.000 0.00 0.00 0.00 2.83
655 702 6.649141 ACGATGATACAAAACTAGCTGACAAA 59.351 34.615 0.00 0.00 0.00 2.83
656 703 6.163476 ACGATGATACAAAACTAGCTGACAA 58.837 36.000 0.00 0.00 0.00 3.18
661 708 5.643777 AGCAAACGATGATACAAAACTAGCT 59.356 36.000 0.00 0.00 0.00 3.32
688 878 1.376424 CCACTCGATGCAACAGCCT 60.376 57.895 0.00 0.00 0.00 4.58
696 886 2.887568 CAGCCGACCACTCGATGC 60.888 66.667 0.00 0.00 43.06 3.91
697 887 1.807165 CACAGCCGACCACTCGATG 60.807 63.158 0.00 0.00 43.06 3.84
698 888 2.573869 CACAGCCGACCACTCGAT 59.426 61.111 0.00 0.00 43.06 3.59
699 889 4.357947 GCACAGCCGACCACTCGA 62.358 66.667 0.00 0.00 43.06 4.04
700 890 3.939837 ATGCACAGCCGACCACTCG 62.940 63.158 0.00 0.00 39.83 4.18
701 891 2.046892 ATGCACAGCCGACCACTC 60.047 61.111 0.00 0.00 0.00 3.51
702 892 2.046892 GATGCACAGCCGACCACT 60.047 61.111 0.00 0.00 0.00 4.00
703 893 3.490759 CGATGCACAGCCGACCAC 61.491 66.667 0.00 0.00 0.00 4.16
704 894 4.758251 CCGATGCACAGCCGACCA 62.758 66.667 0.00 0.00 0.00 4.02
722 912 1.731700 CATCAAATGCTGGCTCCGG 59.268 57.895 0.00 0.00 0.00 5.14
729 919 7.822303 ACAGATGTGTTCGCATCAAATGCTG 62.822 44.000 22.54 15.11 43.98 4.41
730 920 5.871477 ACAGATGTGTTCGCATCAAATGCT 61.871 41.667 22.54 4.14 43.98 3.79
745 935 1.497278 CACGGCCGAAACAGATGTG 59.503 57.895 35.90 12.72 0.00 3.21
747 937 1.647545 ATGCACGGCCGAAACAGATG 61.648 55.000 35.90 19.16 0.00 2.90
748 1030 1.369091 GATGCACGGCCGAAACAGAT 61.369 55.000 35.90 14.06 0.00 2.90
769 1051 3.271706 TTGCTTGCCACGATGCTGC 62.272 57.895 0.00 0.00 34.01 5.25
770 1052 1.154093 CTTGCTTGCCACGATGCTG 60.154 57.895 0.00 0.00 0.00 4.41
771 1053 1.302752 TCTTGCTTGCCACGATGCT 60.303 52.632 0.00 0.00 0.00 3.79
772 1054 1.154150 GTCTTGCTTGCCACGATGC 60.154 57.895 0.00 0.00 0.00 3.91
773 1055 0.167470 CTGTCTTGCTTGCCACGATG 59.833 55.000 0.00 0.00 0.00 3.84
774 1056 0.250467 ACTGTCTTGCTTGCCACGAT 60.250 50.000 0.00 0.00 0.00 3.73
775 1057 0.391228 TACTGTCTTGCTTGCCACGA 59.609 50.000 0.00 0.00 0.00 4.35
777 1059 1.884235 AGTACTGTCTTGCTTGCCAC 58.116 50.000 0.00 0.00 0.00 5.01
778 1060 2.367241 TGTAGTACTGTCTTGCTTGCCA 59.633 45.455 5.39 0.00 0.00 4.92
784 1066 4.960354 CGTACGTATGTAGTACTGTCTTGC 59.040 45.833 7.22 0.53 41.51 4.01
785 1067 6.181255 GTCGTACGTATGTAGTACTGTCTTG 58.819 44.000 16.05 0.00 41.51 3.02
786 1068 5.292101 GGTCGTACGTATGTAGTACTGTCTT 59.708 44.000 16.05 0.08 41.51 3.01
787 1069 4.806247 GGTCGTACGTATGTAGTACTGTCT 59.194 45.833 16.05 0.00 41.51 3.41
788 1070 4.806247 AGGTCGTACGTATGTAGTACTGTC 59.194 45.833 16.05 0.00 41.51 3.51
789 1071 4.759782 AGGTCGTACGTATGTAGTACTGT 58.240 43.478 16.05 0.00 41.51 3.55
790 1072 5.980116 AGTAGGTCGTACGTATGTAGTACTG 59.020 44.000 16.05 0.00 41.51 2.74
791 1073 6.150396 AGTAGGTCGTACGTATGTAGTACT 57.850 41.667 16.05 14.41 41.51 2.73
792 1074 5.402867 GGAGTAGGTCGTACGTATGTAGTAC 59.597 48.000 16.05 12.74 40.59 2.73
793 1075 5.068591 TGGAGTAGGTCGTACGTATGTAGTA 59.931 44.000 16.05 2.42 36.66 1.82
794 1076 4.141937 TGGAGTAGGTCGTACGTATGTAGT 60.142 45.833 16.05 6.02 36.66 2.73
795 1077 4.371786 TGGAGTAGGTCGTACGTATGTAG 58.628 47.826 16.05 0.00 36.66 2.74
900 1185 4.450053 CATTGGTTGGTGTTTGGTGATTT 58.550 39.130 0.00 0.00 0.00 2.17
958 1243 3.767044 GAGGGAGGGAGGGAGAGCC 62.767 73.684 0.00 0.00 0.00 4.70
959 1244 2.123033 GAGGGAGGGAGGGAGAGC 60.123 72.222 0.00 0.00 0.00 4.09
960 1245 2.328589 TGGAGGGAGGGAGGGAGAG 61.329 68.421 0.00 0.00 0.00 3.20
961 1246 2.204624 TGGAGGGAGGGAGGGAGA 60.205 66.667 0.00 0.00 0.00 3.71
962 1247 2.041405 GTGGAGGGAGGGAGGGAG 60.041 72.222 0.00 0.00 0.00 4.30
963 1248 2.540910 AGTGGAGGGAGGGAGGGA 60.541 66.667 0.00 0.00 0.00 4.20
964 1249 2.041405 GAGTGGAGGGAGGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
965 1250 2.041405 GGAGTGGAGGGAGGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
983 1268 3.339253 AAACTTATAAACGAGGCGGGT 57.661 42.857 0.00 0.00 0.00 5.28
987 1272 6.025896 GGCTTGTTAAACTTATAAACGAGGC 58.974 40.000 11.10 11.10 46.47 4.70
1101 1388 3.223589 GAGCGAGGAGGAGGAGGC 61.224 72.222 0.00 0.00 0.00 4.70
1253 1559 4.351938 CCGTTGTCCTCGCCGTCA 62.352 66.667 0.00 0.00 0.00 4.35
1378 1710 5.469373 TCAGAAACAAGCACGCTTATATG 57.531 39.130 3.53 2.40 34.50 1.78
1477 1813 5.016831 AGAAGAAGAGAGGAGGAGAGAAAC 58.983 45.833 0.00 0.00 0.00 2.78
1503 1842 0.103390 TCGCCGTCAGTGTTTTCTCA 59.897 50.000 0.00 0.00 0.00 3.27
1715 2079 0.025001 CACATGTCGCGAAATCGTCC 59.975 55.000 12.06 0.00 42.22 4.79
1716 2080 0.713883 ACACATGTCGCGAAATCGTC 59.286 50.000 12.06 0.00 42.22 4.20
1739 2103 4.618489 GTGATAGTTTCAGCATTGCAACAC 59.382 41.667 11.91 0.00 33.59 3.32
1741 2114 4.797471 TGTGATAGTTTCAGCATTGCAAC 58.203 39.130 11.91 6.81 34.17 4.17
1747 2120 5.295292 GTGCATACTGTGATAGTTTCAGCAT 59.705 40.000 0.00 0.00 40.89 3.79
1757 2130 4.712122 TCGTTGAGTGCATACTGTGATA 57.288 40.909 0.00 0.00 37.25 2.15
1772 2145 3.885724 TGGATTAGCAGACATCGTTGA 57.114 42.857 0.00 0.00 0.00 3.18
1773 2146 4.944962 TTTGGATTAGCAGACATCGTTG 57.055 40.909 0.00 0.00 0.00 4.10
1785 2158 6.618287 TGATCGGTGCTAATTTTGGATTAG 57.382 37.500 2.25 2.25 35.34 1.73
1787 2160 6.469782 AATGATCGGTGCTAATTTTGGATT 57.530 33.333 0.00 0.00 0.00 3.01
1807 2180 5.125417 CCTGTTGTTGGTTCCTATGGTAATG 59.875 44.000 0.00 0.00 0.00 1.90
1835 2208 3.281751 CTCGCTGAAACCGTGCACG 62.282 63.158 31.77 31.77 39.44 5.34
1880 2253 0.749049 TCGATGTCTGGCAGGATCAG 59.251 55.000 15.73 12.04 0.00 2.90
2148 2523 4.770010 GGTTGGGGATGAACTGATAAAACA 59.230 41.667 0.00 0.00 0.00 2.83
2199 2574 6.940739 TGAAAAACAATTGTGAGAAAGGGAA 58.059 32.000 12.82 0.00 0.00 3.97
2200 2575 6.406849 CCTGAAAAACAATTGTGAGAAAGGGA 60.407 38.462 12.82 0.00 0.00 4.20
2201 2576 5.754890 CCTGAAAAACAATTGTGAGAAAGGG 59.245 40.000 12.82 6.11 0.00 3.95
2202 2577 5.234972 GCCTGAAAAACAATTGTGAGAAAGG 59.765 40.000 12.82 16.62 0.00 3.11
2203 2578 6.044682 AGCCTGAAAAACAATTGTGAGAAAG 58.955 36.000 12.82 7.73 0.00 2.62
2205 2580 5.360714 AGAGCCTGAAAAACAATTGTGAGAA 59.639 36.000 12.82 0.00 0.00 2.87
2206 2581 4.889409 AGAGCCTGAAAAACAATTGTGAGA 59.111 37.500 12.82 0.00 0.00 3.27
2207 2582 5.192327 AGAGCCTGAAAAACAATTGTGAG 57.808 39.130 12.82 3.67 0.00 3.51
2209 2584 4.025480 GCAAGAGCCTGAAAAACAATTGTG 60.025 41.667 12.82 0.00 33.58 3.33
2210 2585 4.122046 GCAAGAGCCTGAAAAACAATTGT 58.878 39.130 4.92 4.92 33.58 2.71
2211 2586 3.182972 CGCAAGAGCCTGAAAAACAATTG 59.817 43.478 3.24 3.24 43.02 2.32
2254 2632 6.798427 TCTCTATGTTCAATTCCTAGCTGT 57.202 37.500 0.00 0.00 0.00 4.40
2372 2750 1.338105 TGATGTTCGGAACTCCTGCTG 60.338 52.381 20.53 0.00 0.00 4.41
2383 2761 6.668323 ACAACAGAATTAACTTGATGTTCGG 58.332 36.000 0.00 0.00 39.89 4.30
2485 2863 2.421424 GTCCATAAAGTTGAGCAGCCAG 59.579 50.000 0.00 0.00 0.00 4.85
2569 2947 6.909909 ACCGTTCCATGAATAAAAAGAGAAC 58.090 36.000 0.00 0.00 0.00 3.01
2574 2952 7.749126 GTGAGTTACCGTTCCATGAATAAAAAG 59.251 37.037 0.00 0.00 0.00 2.27
2595 2974 7.363355 CGCATCATCCTATATAAAGAGGTGAGT 60.363 40.741 0.00 0.00 35.46 3.41
2618 2997 2.695127 AACGGGTTACATTATCCGCA 57.305 45.000 0.00 0.00 45.65 5.69
2621 3000 7.040686 AGCATCATAAAACGGGTTACATTATCC 60.041 37.037 0.00 0.00 0.00 2.59
2639 3018 2.052779 CTCCCGAGCCAGCATCATA 58.947 57.895 0.00 0.00 0.00 2.15
2657 3036 0.886490 CTGTGCGAGGGATAATGGGC 60.886 60.000 0.00 0.00 0.00 5.36
2698 3077 3.461843 GCAGGAAGAAAACGTGCAG 57.538 52.632 0.00 0.00 44.79 4.41
2749 3129 8.301730 ACAATTTGTAGAGCAACATTTCATTG 57.698 30.769 0.00 0.00 36.72 2.82
2929 3309 4.274214 CACTGATCAGTTCTGCTTCAAACA 59.726 41.667 25.84 0.00 40.20 2.83
2949 3329 1.032014 ACAAAAACCGATGCAGCACT 58.968 45.000 1.53 0.00 0.00 4.40
2960 3340 4.380867 CCATCTGCAGACCATACAAAAACC 60.381 45.833 20.97 0.00 0.00 3.27
2961 3341 4.458989 TCCATCTGCAGACCATACAAAAAC 59.541 41.667 20.97 0.00 0.00 2.43
3012 3392 3.053455 GGAGTTATCATCAGCTACACGC 58.947 50.000 0.00 0.00 39.57 5.34
3066 3446 3.249799 TGTGCACTGTTAAATGGAACTCG 59.750 43.478 19.41 0.00 0.00 4.18
3122 3515 7.171167 TGGCACAACATTTTGAGAAACATTATG 59.829 33.333 0.00 0.00 36.48 1.90
3127 3520 4.431809 CTGGCACAACATTTTGAGAAACA 58.568 39.130 0.00 0.00 38.70 2.83
3128 3521 3.803778 CCTGGCACAACATTTTGAGAAAC 59.196 43.478 0.00 0.00 38.70 2.78
3186 3579 1.677576 GCATTCGGATCAGCCATTGAA 59.322 47.619 0.00 0.00 39.77 2.69
3219 3612 8.842280 TGATAAAACCACACCTTTAAGTTACTG 58.158 33.333 0.00 0.00 0.00 2.74
3244 3637 0.108804 ACCATAACGACCAGCGACTG 60.109 55.000 0.00 0.00 44.57 3.51
3245 3638 0.172803 GACCATAACGACCAGCGACT 59.827 55.000 0.00 0.00 44.57 4.18
3246 3639 0.172803 AGACCATAACGACCAGCGAC 59.827 55.000 0.00 0.00 44.57 5.19
3247 3640 0.172578 CAGACCATAACGACCAGCGA 59.827 55.000 0.00 0.00 44.57 4.93
3249 3642 0.249398 ACCAGACCATAACGACCAGC 59.751 55.000 0.00 0.00 0.00 4.85
3250 3643 1.405526 CCACCAGACCATAACGACCAG 60.406 57.143 0.00 0.00 0.00 4.00
3257 3650 4.564821 GCTCACTTAACCACCAGACCATAA 60.565 45.833 0.00 0.00 0.00 1.90
3285 3682 5.817816 AGACAAAAACAGAGACGAATTGAGT 59.182 36.000 0.00 0.00 0.00 3.41
3288 3685 7.603515 CAAAAGACAAAAACAGAGACGAATTG 58.396 34.615 0.00 0.00 0.00 2.32
3290 3687 5.743872 GCAAAAGACAAAAACAGAGACGAAT 59.256 36.000 0.00 0.00 0.00 3.34
3296 3693 4.175516 TGCTGCAAAAGACAAAAACAGAG 58.824 39.130 0.00 0.00 0.00 3.35
3349 3746 3.319405 CAGTGACATCGGTAGGATAGCTT 59.681 47.826 0.00 0.00 36.81 3.74
3402 3799 9.566432 AAATACTGACTATCAAGGGATGATTTC 57.434 33.333 0.00 0.00 46.85 2.17
3422 3819 5.104360 TGCTTCTATTCCAGAGCCAAATACT 60.104 40.000 0.00 0.00 33.83 2.12
3467 3864 2.575279 ACTGCCAGGTGAATCTCTTCAT 59.425 45.455 0.00 0.00 43.08 2.57
3530 3927 3.698250 TGTCCCTGTGGAAAGAACG 57.302 52.632 0.00 0.00 44.07 3.95
3620 4017 4.104420 AGCCAATATTTCAGGAGCTCTCAT 59.896 41.667 14.64 0.00 0.00 2.90
3742 4158 6.429791 TGCAAATAATACACGCATTACTGT 57.570 33.333 0.00 0.00 0.00 3.55
3756 4208 5.939296 CCCACCAATCAACTTTGCAAATAAT 59.061 36.000 13.23 0.00 0.00 1.28
3882 7583 5.991328 TGTTTTGAAGTAGCTTCTCACAG 57.009 39.130 9.82 0.00 40.73 3.66
4056 7792 9.470399 AAGAAAAGTAGTTGTTTTTAGAGGGAA 57.530 29.630 0.00 0.00 0.00 3.97
4065 7801 7.876896 TCGCAAAAAGAAAAGTAGTTGTTTT 57.123 28.000 0.00 0.00 35.99 2.43
4066 7802 7.876896 TTCGCAAAAAGAAAAGTAGTTGTTT 57.123 28.000 0.00 0.00 0.00 2.83
4067 7803 7.876896 TTTCGCAAAAAGAAAAGTAGTTGTT 57.123 28.000 0.00 0.00 35.00 2.83
4068 7804 7.757624 TGATTTCGCAAAAAGAAAAGTAGTTGT 59.242 29.630 0.00 0.00 40.44 3.32
4179 7933 1.129251 CACACGTTATTGCAGCCTCAG 59.871 52.381 0.00 0.00 0.00 3.35
4264 8018 9.869757 AATATTTTCTTGGTAAAGTAATGCACC 57.130 29.630 0.00 0.00 34.78 5.01
4274 8028 7.459444 ACATCCCCCAAATATTTTCTTGGTAAA 59.541 33.333 0.00 0.00 40.51 2.01
4275 8029 6.962902 ACATCCCCCAAATATTTTCTTGGTAA 59.037 34.615 0.00 0.00 40.51 2.85
4276 8030 6.507568 ACATCCCCCAAATATTTTCTTGGTA 58.492 36.000 0.00 0.00 40.51 3.25
4277 8031 5.349690 ACATCCCCCAAATATTTTCTTGGT 58.650 37.500 0.00 0.00 40.51 3.67
4278 8032 5.955961 ACATCCCCCAAATATTTTCTTGG 57.044 39.130 0.00 0.00 41.58 3.61
4279 8033 8.078060 ACTAACATCCCCCAAATATTTTCTTG 57.922 34.615 0.00 0.00 0.00 3.02
4280 8034 8.679344 AACTAACATCCCCCAAATATTTTCTT 57.321 30.769 0.00 0.00 0.00 2.52
4281 8035 8.539544 CAAACTAACATCCCCCAAATATTTTCT 58.460 33.333 0.00 0.00 0.00 2.52
4282 8036 7.279981 GCAAACTAACATCCCCCAAATATTTTC 59.720 37.037 0.00 0.00 0.00 2.29
4283 8037 7.037658 AGCAAACTAACATCCCCCAAATATTTT 60.038 33.333 0.00 0.00 0.00 1.82
4284 8038 6.443527 AGCAAACTAACATCCCCCAAATATTT 59.556 34.615 0.00 0.00 0.00 1.40
4285 8039 5.963865 AGCAAACTAACATCCCCCAAATATT 59.036 36.000 0.00 0.00 0.00 1.28
4286 8040 5.528337 AGCAAACTAACATCCCCCAAATAT 58.472 37.500 0.00 0.00 0.00 1.28
4287 8041 4.941713 AGCAAACTAACATCCCCCAAATA 58.058 39.130 0.00 0.00 0.00 1.40
4288 8042 3.769300 GAGCAAACTAACATCCCCCAAAT 59.231 43.478 0.00 0.00 0.00 2.32
4289 8043 3.161866 GAGCAAACTAACATCCCCCAAA 58.838 45.455 0.00 0.00 0.00 3.28
4290 8044 2.802719 GAGCAAACTAACATCCCCCAA 58.197 47.619 0.00 0.00 0.00 4.12
4291 8045 1.339631 CGAGCAAACTAACATCCCCCA 60.340 52.381 0.00 0.00 0.00 4.96
4292 8046 1.339727 ACGAGCAAACTAACATCCCCC 60.340 52.381 0.00 0.00 0.00 5.40
4293 8047 2.007608 GACGAGCAAACTAACATCCCC 58.992 52.381 0.00 0.00 0.00 4.81
4294 8048 2.930682 GAGACGAGCAAACTAACATCCC 59.069 50.000 0.00 0.00 0.00 3.85
4295 8049 2.930682 GGAGACGAGCAAACTAACATCC 59.069 50.000 0.00 0.00 0.00 3.51
4296 8050 2.930682 GGGAGACGAGCAAACTAACATC 59.069 50.000 0.00 0.00 0.00 3.06
4297 8051 2.354805 GGGGAGACGAGCAAACTAACAT 60.355 50.000 0.00 0.00 0.00 2.71
4298 8052 1.001633 GGGGAGACGAGCAAACTAACA 59.998 52.381 0.00 0.00 0.00 2.41
4299 8053 1.723220 GGGGAGACGAGCAAACTAAC 58.277 55.000 0.00 0.00 0.00 2.34
4300 8054 0.245539 CGGGGAGACGAGCAAACTAA 59.754 55.000 0.00 0.00 35.47 2.24
4301 8055 1.888018 CGGGGAGACGAGCAAACTA 59.112 57.895 0.00 0.00 35.47 2.24
4302 8056 2.657237 CGGGGAGACGAGCAAACT 59.343 61.111 0.00 0.00 35.47 2.66
4303 8057 3.119096 GCGGGGAGACGAGCAAAC 61.119 66.667 0.00 0.00 35.47 2.93
4304 8058 3.621805 TGCGGGGAGACGAGCAAA 61.622 61.111 0.00 0.00 39.79 3.68
4305 8059 4.373116 GTGCGGGGAGACGAGCAA 62.373 66.667 0.00 0.00 43.25 3.91
4307 8061 4.803426 CTGTGCGGGGAGACGAGC 62.803 72.222 0.00 0.00 35.47 5.03
4308 8062 2.154798 TTTCTGTGCGGGGAGACGAG 62.155 60.000 0.00 0.00 35.47 4.18
4316 8070 2.095567 CAGTCAAGAATTTCTGTGCGGG 60.096 50.000 0.00 0.00 0.00 6.13
4317 8071 2.666619 GCAGTCAAGAATTTCTGTGCGG 60.667 50.000 0.00 0.00 32.42 5.69
4345 8305 4.538283 ACGGAGAGTGCGCGATCG 62.538 66.667 12.10 11.69 33.30 3.69
4354 8314 7.175347 ACATATGCATATTATCACGGAGAGT 57.825 36.000 16.71 4.50 0.00 3.24
4424 8387 1.290955 CTTACGGGTGCGAGTTCCA 59.709 57.895 0.00 0.00 0.00 3.53
4426 8389 0.319297 ACACTTACGGGTGCGAGTTC 60.319 55.000 5.57 0.00 40.52 3.01
4446 8412 1.765904 TCGGCCCAAATATGAGTAGCA 59.234 47.619 0.00 0.00 0.00 3.49
4462 8428 2.180432 AAGTTTCTAGTTGGGTCGGC 57.820 50.000 0.00 0.00 0.00 5.54
4466 8432 6.322969 CCTTTTTGGTAAGTTTCTAGTTGGGT 59.677 38.462 0.00 0.00 0.00 4.51
4486 8452 6.347859 TCCCGCATTACAAAAATACCTTTT 57.652 33.333 0.00 0.00 37.75 2.27
4488 8454 5.244178 TGTTCCCGCATTACAAAAATACCTT 59.756 36.000 0.00 0.00 0.00 3.50
4489 8455 4.767928 TGTTCCCGCATTACAAAAATACCT 59.232 37.500 0.00 0.00 0.00 3.08
4490 8456 5.061920 TGTTCCCGCATTACAAAAATACC 57.938 39.130 0.00 0.00 0.00 2.73
4491 8457 7.589574 AAATGTTCCCGCATTACAAAAATAC 57.410 32.000 0.00 0.00 38.03 1.89
4493 8459 7.503521 AAAAATGTTCCCGCATTACAAAAAT 57.496 28.000 0.00 0.00 38.03 1.82
4503 8469 1.001158 GGTTCGAAAAATGTTCCCGCA 60.001 47.619 0.00 0.00 0.00 5.69
4504 8470 1.667756 GGGTTCGAAAAATGTTCCCGC 60.668 52.381 0.00 0.00 0.00 6.13
4505 8471 1.609555 TGGGTTCGAAAAATGTTCCCG 59.390 47.619 11.79 0.00 36.53 5.14
4506 8472 3.257127 TCATGGGTTCGAAAAATGTTCCC 59.743 43.478 10.11 10.11 0.00 3.97
4507 8473 4.513198 TCATGGGTTCGAAAAATGTTCC 57.487 40.909 0.00 0.00 0.00 3.62
4511 8477 7.599998 AGAAAAAGATCATGGGTTCGAAAAATG 59.400 33.333 0.00 4.55 0.00 2.32
4654 11158 2.480419 AGTTTTTCAGCCGTTCAGATCG 59.520 45.455 0.00 0.00 0.00 3.69
4655 11159 5.607119 TTAGTTTTTCAGCCGTTCAGATC 57.393 39.130 0.00 0.00 0.00 2.75
4657 11161 4.151689 CGATTAGTTTTTCAGCCGTTCAGA 59.848 41.667 0.00 0.00 0.00 3.27
4658 11162 4.151689 TCGATTAGTTTTTCAGCCGTTCAG 59.848 41.667 0.00 0.00 0.00 3.02
4663 11167 4.921470 TCTTCGATTAGTTTTTCAGCCG 57.079 40.909 0.00 0.00 0.00 5.52
4705 11212 4.226113 AGGTTAGAGAGCGCTAATTACG 57.774 45.455 11.50 3.91 33.34 3.18
4709 11216 5.992217 CCAAATAAGGTTAGAGAGCGCTAAT 59.008 40.000 11.50 0.65 33.34 1.73
4710 11217 5.357257 CCAAATAAGGTTAGAGAGCGCTAA 58.643 41.667 11.50 0.00 0.00 3.09
4714 11221 2.872858 GCCCAAATAAGGTTAGAGAGCG 59.127 50.000 0.00 0.00 0.00 5.03
4723 11230 2.043349 GGCCGGCCCAAATAAGGT 60.043 61.111 36.64 0.00 0.00 3.50
4735 11242 2.828549 AGCGCTAAATTGGGCCGG 60.829 61.111 8.99 0.00 45.35 6.13
4736 11243 2.408835 CAGCGCTAAATTGGGCCG 59.591 61.111 10.99 0.00 45.35 6.13
4757 11264 2.763645 AAACCAGCACCGTTCCCCT 61.764 57.895 0.00 0.00 0.00 4.79
4763 11270 0.393808 AAGACACAAACCAGCACCGT 60.394 50.000 0.00 0.00 0.00 4.83
4764 11271 0.029300 CAAGACACAAACCAGCACCG 59.971 55.000 0.00 0.00 0.00 4.94
4766 11273 0.740737 AGCAAGACACAAACCAGCAC 59.259 50.000 0.00 0.00 0.00 4.40
4767 11274 1.473258 AAGCAAGACACAAACCAGCA 58.527 45.000 0.00 0.00 0.00 4.41
4768 11275 2.878406 TCTAAGCAAGACACAAACCAGC 59.122 45.455 0.00 0.00 0.00 4.85
4769 11276 3.058639 GCTCTAAGCAAGACACAAACCAG 60.059 47.826 0.00 0.00 41.89 4.00
4770 11277 2.878406 GCTCTAAGCAAGACACAAACCA 59.122 45.455 0.00 0.00 41.89 3.67
4772 11279 2.800544 TCGCTCTAAGCAAGACACAAAC 59.199 45.455 0.00 0.00 42.58 2.93
4775 11282 1.886542 TCTCGCTCTAAGCAAGACACA 59.113 47.619 0.00 0.00 42.58 3.72
4776 11283 2.638556 TCTCGCTCTAAGCAAGACAC 57.361 50.000 0.00 0.00 42.58 3.67
4779 11286 1.840737 AGGTCTCGCTCTAAGCAAGA 58.159 50.000 0.00 0.00 42.58 3.02
4780 11287 2.663826 AAGGTCTCGCTCTAAGCAAG 57.336 50.000 0.00 0.00 42.58 4.01
4781 11288 3.402628 AAAAGGTCTCGCTCTAAGCAA 57.597 42.857 0.00 0.00 42.58 3.91
4782 11289 3.402628 AAAAAGGTCTCGCTCTAAGCA 57.597 42.857 0.00 0.00 42.58 3.91
4801 11308 6.481644 GGACATGTGGTTAGCAAAATCAAAAA 59.518 34.615 1.15 0.00 0.00 1.94
4802 11309 5.988561 GGACATGTGGTTAGCAAAATCAAAA 59.011 36.000 1.15 0.00 0.00 2.44
4803 11310 5.510520 GGGACATGTGGTTAGCAAAATCAAA 60.511 40.000 1.15 0.00 0.00 2.69
4804 11311 4.021544 GGGACATGTGGTTAGCAAAATCAA 60.022 41.667 1.15 0.00 0.00 2.57
4805 11312 3.509575 GGGACATGTGGTTAGCAAAATCA 59.490 43.478 1.15 0.00 0.00 2.57
4806 11313 3.509575 TGGGACATGTGGTTAGCAAAATC 59.490 43.478 1.15 0.00 0.00 2.17
4807 11314 3.505386 TGGGACATGTGGTTAGCAAAAT 58.495 40.909 1.15 0.00 0.00 1.82
4808 11315 2.950781 TGGGACATGTGGTTAGCAAAA 58.049 42.857 1.15 0.00 0.00 2.44
4809 11316 2.666272 TGGGACATGTGGTTAGCAAA 57.334 45.000 1.15 0.00 0.00 3.68
4827 11334 2.528743 CGCTCTAAGCCACCGCATG 61.529 63.158 0.00 0.00 38.18 4.06
4828 11335 2.202932 CGCTCTAAGCCACCGCAT 60.203 61.111 0.00 0.00 38.18 4.73
4829 11336 3.356639 CTCGCTCTAAGCCACCGCA 62.357 63.158 0.00 0.00 38.18 5.69
4830 11337 2.583593 CTCGCTCTAAGCCACCGC 60.584 66.667 0.00 0.00 38.18 5.68
4831 11338 1.226717 GTCTCGCTCTAAGCCACCG 60.227 63.158 0.00 0.00 38.18 4.94
4832 11339 1.142097 GGTCTCGCTCTAAGCCACC 59.858 63.158 0.00 0.00 38.18 4.61
4833 11340 1.335496 CTAGGTCTCGCTCTAAGCCAC 59.665 57.143 0.00 0.00 38.18 5.01
4834 11341 1.681538 CTAGGTCTCGCTCTAAGCCA 58.318 55.000 0.00 0.00 38.18 4.75
4835 11342 0.955905 CCTAGGTCTCGCTCTAAGCC 59.044 60.000 0.00 0.00 38.18 4.35
4836 11343 0.955905 CCCTAGGTCTCGCTCTAAGC 59.044 60.000 8.29 0.00 38.02 3.09
4837 11344 2.500229 CTCCCTAGGTCTCGCTCTAAG 58.500 57.143 8.29 0.00 0.00 2.18
4838 11345 1.477195 GCTCCCTAGGTCTCGCTCTAA 60.477 57.143 8.29 0.00 0.00 2.10
4839 11346 0.108963 GCTCCCTAGGTCTCGCTCTA 59.891 60.000 8.29 0.00 0.00 2.43
4840 11347 1.152839 GCTCCCTAGGTCTCGCTCT 60.153 63.158 8.29 0.00 0.00 4.09
4841 11348 2.197605 GGCTCCCTAGGTCTCGCTC 61.198 68.421 8.29 0.00 0.00 5.03
4842 11349 2.123640 GGCTCCCTAGGTCTCGCT 60.124 66.667 8.29 0.00 0.00 4.93
4843 11350 3.228017 GGGCTCCCTAGGTCTCGC 61.228 72.222 8.29 4.25 0.00 5.03
4844 11351 2.604152 AGGGCTCCCTAGGTCTCG 59.396 66.667 5.48 0.00 46.14 4.04
4853 11360 4.162690 ATTCACGCGAGGGCTCCC 62.163 66.667 15.93 0.00 36.88 4.30
4854 11361 2.892425 CATTCACGCGAGGGCTCC 60.892 66.667 15.93 0.00 36.88 4.70
4855 11362 2.892425 CCATTCACGCGAGGGCTC 60.892 66.667 15.93 0.00 36.88 4.70
4856 11363 4.473520 CCCATTCACGCGAGGGCT 62.474 66.667 15.93 0.00 36.88 5.19
4857 11364 4.467084 TCCCATTCACGCGAGGGC 62.467 66.667 15.93 0.00 41.22 5.19
4858 11365 2.202932 CTCCCATTCACGCGAGGG 60.203 66.667 15.93 15.62 42.86 4.30
4859 11366 2.892425 GCTCCCATTCACGCGAGG 60.892 66.667 15.93 4.29 0.00 4.63
4860 11367 2.892425 GGCTCCCATTCACGCGAG 60.892 66.667 15.93 4.59 0.00 5.03
4861 11368 4.467084 GGGCTCCCATTCACGCGA 62.467 66.667 15.93 0.00 35.81 5.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.