Multiple sequence alignment - TraesCS2D01G079100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G079100 chr2D 100.000 4020 0 0 1 4020 33891173 33895192 0.000000e+00 7424.0
1 TraesCS2D01G079100 chr2D 80.392 204 22 9 2432 2635 28841927 28841742 5.420000e-29 139.0
2 TraesCS2D01G079100 chr2D 92.683 82 6 0 432 513 22771230 22771149 7.060000e-23 119.0
3 TraesCS2D01G079100 chr2D 92.593 81 6 0 432 512 69254284 69254204 2.540000e-22 117.0
4 TraesCS2D01G079100 chr2D 76.096 251 35 12 2410 2636 28841367 28841118 1.530000e-19 108.0
5 TraesCS2D01G079100 chr2A 85.179 1788 156 54 876 2634 36800324 36802031 0.000000e+00 1733.0
6 TraesCS2D01G079100 chr2A 88.608 632 47 9 2650 3278 36802080 36802689 0.000000e+00 745.0
7 TraesCS2D01G079100 chr2A 83.918 485 29 16 3487 3957 36802846 36803295 6.210000e-113 418.0
8 TraesCS2D01G079100 chr2A 87.156 109 7 1 2534 2635 30806885 30806777 2.540000e-22 117.0
9 TraesCS2D01G079100 chr2A 92.593 81 6 0 433 513 729554945 729555025 2.540000e-22 117.0
10 TraesCS2D01G079100 chr2A 92.593 81 6 0 432 512 754367707 754367627 2.540000e-22 117.0
11 TraesCS2D01G079100 chr2A 92.593 81 6 0 432 512 754370910 754370830 2.540000e-22 117.0
12 TraesCS2D01G079100 chr2A 82.105 95 12 3 649 738 36800161 36800255 4.310000e-10 76.8
13 TraesCS2D01G079100 chr2B 85.912 1370 102 47 588 1894 55990650 55991991 0.000000e+00 1376.0
14 TraesCS2D01G079100 chr2B 89.717 671 32 7 2650 3319 55992820 55993454 0.000000e+00 822.0
15 TraesCS2D01G079100 chr2B 84.157 587 52 24 2064 2644 55992230 55992781 7.650000e-147 531.0
16 TraesCS2D01G079100 chr2B 86.946 429 34 4 1 407 55989978 55990406 2.830000e-126 462.0
17 TraesCS2D01G079100 chr2B 91.071 168 14 1 2151 2318 46581324 46581158 4.040000e-55 226.0
18 TraesCS2D01G079100 chr2B 78.016 373 43 25 2289 2637 46569734 46569377 8.810000e-47 198.0
19 TraesCS2D01G079100 chr2B 91.463 82 7 0 432 513 148251744 148251663 3.280000e-21 113.0
20 TraesCS2D01G079100 chr7B 91.160 181 14 1 1543 1721 547962977 547962797 1.120000e-60 244.0
21 TraesCS2D01G079100 chr7B 87.500 64 4 4 570 629 159000703 159000766 2.000000e-08 71.3
22 TraesCS2D01G079100 chr1D 90.055 181 16 2 1544 1723 493747616 493747795 2.420000e-57 233.0
23 TraesCS2D01G079100 chr1D 85.507 69 3 5 566 628 2758616 2758683 9.330000e-07 65.8
24 TraesCS2D01G079100 chr3D 89.944 179 18 0 1543 1721 168502847 168503025 8.690000e-57 231.0
25 TraesCS2D01G079100 chr3A 89.560 182 16 2 1544 1723 411271566 411271386 1.120000e-55 228.0
26 TraesCS2D01G079100 chr3A 86.585 82 8 3 513 594 493699157 493699235 1.990000e-13 87.9
27 TraesCS2D01G079100 chr4B 82.716 243 18 6 3487 3718 576200376 576200605 1.140000e-45 195.0
28 TraesCS2D01G079100 chr6B 83.857 223 15 9 1591 1813 213157024 213156823 4.100000e-45 193.0
29 TraesCS2D01G079100 chr7A 83.060 183 24 5 1359 1534 30406262 30406444 4.160000e-35 159.0
30 TraesCS2D01G079100 chr3B 92.683 82 6 0 432 513 384727402 384727483 7.060000e-23 119.0
31 TraesCS2D01G079100 chr3B 92.593 81 3 2 513 593 377680794 377680717 3.280000e-21 113.0
32 TraesCS2D01G079100 chr1A 91.463 82 7 0 432 513 151337474 151337555 3.280000e-21 113.0
33 TraesCS2D01G079100 chr5B 79.762 168 23 9 433 594 606979290 606979128 1.180000e-20 111.0
34 TraesCS2D01G079100 chr6D 90.244 82 6 2 513 594 460817236 460817157 5.490000e-19 106.0
35 TraesCS2D01G079100 chr6D 93.878 49 2 1 513 561 14286736 14286689 5.570000e-09 73.1
36 TraesCS2D01G079100 chr4D 89.157 83 8 1 513 595 47980109 47980190 7.110000e-18 102.0
37 TraesCS2D01G079100 chr5D 89.024 82 8 1 513 594 422014524 422014604 2.560000e-17 100.0
38 TraesCS2D01G079100 chr6A 91.525 59 4 1 513 571 522231237 522231294 3.330000e-11 80.5
39 TraesCS2D01G079100 chr6A 88.235 68 3 3 566 629 55882074 55882008 4.310000e-10 76.8
40 TraesCS2D01G079100 chr6A 83.333 78 12 1 71 147 106797578 106797655 2.000000e-08 71.3
41 TraesCS2D01G079100 chr7D 97.561 41 1 0 588 628 133500624 133500664 2.000000e-08 71.3
42 TraesCS2D01G079100 chr7D 97.561 41 1 0 588 628 133603877 133603837 2.000000e-08 71.3
43 TraesCS2D01G079100 chr5A 97.561 41 1 0 588 628 30104229 30104189 2.000000e-08 71.3
44 TraesCS2D01G079100 chr1B 97.561 41 1 0 588 628 363450429 363450389 2.000000e-08 71.3
45 TraesCS2D01G079100 chr4A 95.349 43 1 1 587 628 75952364 75952322 2.590000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G079100 chr2D 33891173 33895192 4019 False 7424.00 7424 100.0000 1 4020 1 chr2D.!!$F1 4019
1 TraesCS2D01G079100 chr2A 36800161 36803295 3134 False 743.20 1733 84.9525 649 3957 4 chr2A.!!$F2 3308
2 TraesCS2D01G079100 chr2B 55989978 55993454 3476 False 797.75 1376 86.6830 1 3319 4 chr2B.!!$F1 3318

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
586 666 0.106519 GCTCGTAGGGGTAGGGTGTA 60.107 60.0 0.00 0.00 0.00 2.90 F
1300 1452 0.107361 TATCTCCAGACGTCTGCGGA 60.107 55.0 35.09 30.96 42.47 5.54 F
2191 2450 0.034476 CAGAAGCAGACAGGCAGACA 59.966 55.0 0.00 0.00 35.83 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1735 1911 0.111061 TCCCAAGAGCAATGCTGTGT 59.889 50.0 14.48 0.0 39.88 3.72 R
2815 3127 0.108615 CAAGGCCTTCGACGTCAGAT 60.109 55.0 17.29 0.0 0.00 2.90 R
3436 3767 0.099968 TCGAAGACGGCCTATTGACG 59.900 55.0 0.00 0.0 40.21 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.014564 GCCTCAACGTCCTCCTTTCG 61.015 60.000 0.00 0.00 0.00 3.46
36 37 1.660575 CTTTCGTCACTCCGCACGT 60.661 57.895 0.00 0.00 37.30 4.49
41 42 1.063951 CGTCACTCCGCACGTACTTC 61.064 60.000 0.00 0.00 0.00 3.01
51 52 2.025418 ACGTACTTCCTTTGCGGCG 61.025 57.895 0.51 0.51 0.00 6.46
53 54 1.785951 GTACTTCCTTTGCGGCGTC 59.214 57.895 9.37 0.91 0.00 5.19
55 56 2.144833 TACTTCCTTTGCGGCGTCGA 62.145 55.000 16.53 0.00 39.00 4.20
67 68 2.277120 CGTCGACGCTAGGAACCG 60.277 66.667 26.59 0.00 0.00 4.44
68 69 2.578981 GTCGACGCTAGGAACCGC 60.579 66.667 0.00 0.00 0.00 5.68
69 70 3.057548 TCGACGCTAGGAACCGCA 61.058 61.111 0.00 0.00 0.00 5.69
70 71 2.879462 CGACGCTAGGAACCGCAC 60.879 66.667 0.00 0.00 0.00 5.34
113 122 3.097728 CTCCGTGCACGTCGTGTC 61.098 66.667 34.81 17.67 35.75 3.67
147 156 4.293648 CCACCGTCCACGCAGTCA 62.294 66.667 0.00 0.00 41.61 3.41
153 162 1.448540 GTCCACGCAGTCATGGAGG 60.449 63.158 0.00 0.00 45.72 4.30
192 201 8.092068 ACTATGTGTGTTATGTGTAGCTGTTAA 58.908 33.333 0.00 0.00 0.00 2.01
200 209 7.384115 TGTTATGTGTAGCTGTTAACTCTGAAC 59.616 37.037 7.22 7.49 0.00 3.18
245 262 5.201713 ACATAGTATAGTTGCATCAGCGT 57.798 39.130 0.00 0.00 46.23 5.07
252 269 0.371645 GTTGCATCAGCGTAGTCAGC 59.628 55.000 0.00 0.00 46.23 4.26
254 271 1.884926 GCATCAGCGTAGTCAGCCC 60.885 63.158 0.00 0.00 34.64 5.19
256 273 0.529337 CATCAGCGTAGTCAGCCCAG 60.529 60.000 0.00 0.00 34.64 4.45
266 283 4.340246 CAGCCCAGCCAGTGCAGA 62.340 66.667 0.00 0.00 41.13 4.26
295 312 0.807275 GCGATGCCAAAATTGCTCCC 60.807 55.000 0.00 0.00 34.58 4.30
299 316 1.851304 TGCCAAAATTGCTCCCCTAG 58.149 50.000 0.00 0.00 0.00 3.02
329 346 2.486951 CTGCATGCAGGCTATCAAAC 57.513 50.000 35.39 0.00 40.17 2.93
334 351 2.401583 TGCAGGCTATCAAACGATGT 57.598 45.000 0.00 0.00 0.00 3.06
336 353 2.009774 GCAGGCTATCAAACGATGTGT 58.990 47.619 0.00 0.00 0.00 3.72
378 401 2.631160 TTTTTCTCACTCGAGCCCAA 57.369 45.000 13.61 0.00 39.30 4.12
389 412 1.164041 CGAGCCCAACCAAAACGAGT 61.164 55.000 0.00 0.00 0.00 4.18
393 416 1.883926 GCCCAACCAAAACGAGTATGT 59.116 47.619 0.00 0.00 0.00 2.29
401 424 4.510340 ACCAAAACGAGTATGTCAAGTGAC 59.490 41.667 4.43 4.43 44.97 3.67
414 437 5.673337 GTCAAGTGACAGAAACTATGCAA 57.327 39.130 6.57 0.00 44.18 4.08
415 438 5.683859 GTCAAGTGACAGAAACTATGCAAG 58.316 41.667 6.57 0.00 44.18 4.01
416 439 4.214119 TCAAGTGACAGAAACTATGCAAGC 59.786 41.667 0.00 0.00 0.00 4.01
417 440 3.743521 AGTGACAGAAACTATGCAAGCA 58.256 40.909 0.00 0.00 0.00 3.91
418 441 3.750130 AGTGACAGAAACTATGCAAGCAG 59.250 43.478 0.00 0.00 0.00 4.24
419 442 2.485426 TGACAGAAACTATGCAAGCAGC 59.515 45.455 0.00 0.00 45.96 5.25
420 443 1.815003 ACAGAAACTATGCAAGCAGCC 59.185 47.619 0.00 0.00 44.83 4.85
421 444 1.814394 CAGAAACTATGCAAGCAGCCA 59.186 47.619 0.00 0.00 44.83 4.75
422 445 2.229543 CAGAAACTATGCAAGCAGCCAA 59.770 45.455 0.00 0.00 44.83 4.52
423 446 2.892852 AGAAACTATGCAAGCAGCCAAA 59.107 40.909 0.00 0.00 44.83 3.28
424 447 2.730550 AACTATGCAAGCAGCCAAAC 57.269 45.000 0.00 0.00 44.83 2.93
425 448 1.619654 ACTATGCAAGCAGCCAAACA 58.380 45.000 0.00 0.00 44.83 2.83
426 449 1.542915 ACTATGCAAGCAGCCAAACAG 59.457 47.619 0.00 0.00 44.83 3.16
427 450 1.542915 CTATGCAAGCAGCCAAACAGT 59.457 47.619 0.00 0.00 44.83 3.55
428 451 0.316204 ATGCAAGCAGCCAAACAGTC 59.684 50.000 0.00 0.00 44.83 3.51
429 452 1.370900 GCAAGCAGCCAAACAGTCG 60.371 57.895 0.00 0.00 37.23 4.18
430 453 1.283793 CAAGCAGCCAAACAGTCGG 59.716 57.895 0.00 0.00 0.00 4.79
431 454 1.898574 AAGCAGCCAAACAGTCGGG 60.899 57.895 0.00 0.00 0.00 5.14
432 455 2.281484 GCAGCCAAACAGTCGGGA 60.281 61.111 0.00 0.00 0.00 5.14
463 486 2.983192 TGGTTGAATGGTTAGAGGGACA 59.017 45.455 0.00 0.00 0.00 4.02
467 490 2.571653 TGAATGGTTAGAGGGACAGTGG 59.428 50.000 0.00 0.00 0.00 4.00
471 494 3.371965 TGGTTAGAGGGACAGTGGTATC 58.628 50.000 0.00 0.00 0.00 2.24
472 495 2.699321 GGTTAGAGGGACAGTGGTATCC 59.301 54.545 0.00 0.00 0.00 2.59
479 502 1.413227 GGACAGTGGTATCCCTAGCCT 60.413 57.143 0.00 0.00 0.00 4.58
490 513 0.969894 CCCTAGCCTATCAGGGTTCG 59.030 60.000 1.69 0.00 45.25 3.95
491 514 1.705873 CCTAGCCTATCAGGGTTCGT 58.294 55.000 1.69 0.00 45.25 3.85
492 515 1.614413 CCTAGCCTATCAGGGTTCGTC 59.386 57.143 1.69 0.00 45.25 4.20
500 523 1.293498 CAGGGTTCGTCTCCTGGTG 59.707 63.158 11.07 0.00 44.99 4.17
509 532 0.175760 GTCTCCTGGTGCTCGCATTA 59.824 55.000 0.00 0.00 0.00 1.90
510 533 1.123077 TCTCCTGGTGCTCGCATTAT 58.877 50.000 0.00 0.00 0.00 1.28
512 535 1.869767 CTCCTGGTGCTCGCATTATTC 59.130 52.381 0.00 0.00 0.00 1.75
514 537 2.698274 TCCTGGTGCTCGCATTATTCTA 59.302 45.455 0.00 0.00 0.00 2.10
515 538 2.802816 CCTGGTGCTCGCATTATTCTAC 59.197 50.000 0.00 0.00 0.00 2.59
517 540 1.792949 GGTGCTCGCATTATTCTACGG 59.207 52.381 0.00 0.00 0.00 4.02
518 541 2.470821 GTGCTCGCATTATTCTACGGT 58.529 47.619 0.00 0.00 0.00 4.83
519 542 2.218759 GTGCTCGCATTATTCTACGGTG 59.781 50.000 0.00 0.00 0.00 4.94
520 543 2.100087 TGCTCGCATTATTCTACGGTGA 59.900 45.455 0.00 0.00 0.00 4.02
521 544 2.471743 GCTCGCATTATTCTACGGTGAC 59.528 50.000 0.00 0.00 0.00 3.67
523 546 4.360563 CTCGCATTATTCTACGGTGACTT 58.639 43.478 0.00 0.00 0.00 3.01
525 605 5.172934 TCGCATTATTCTACGGTGACTTTT 58.827 37.500 0.00 0.00 0.00 2.27
537 617 8.675504 TCTACGGTGACTTTTGTAAATTTCAAA 58.324 29.630 0.00 3.05 33.76 2.69
542 622 9.914923 GGTGACTTTTGTAAATTTCAAAATGAC 57.085 29.630 19.54 16.53 41.67 3.06
546 626 9.934190 ACTTTTGTAAATTTCAAAATGACATGC 57.066 25.926 19.54 0.00 41.67 4.06
549 629 5.636965 TGTAAATTTCAAAATGACATGCCGG 59.363 36.000 0.00 0.00 0.00 6.13
552 632 0.810648 TCAAAATGACATGCCGGCTC 59.189 50.000 29.70 17.89 0.00 4.70
558 638 1.812922 GACATGCCGGCTCAGTCTG 60.813 63.158 29.70 16.49 0.00 3.51
560 640 1.376424 CATGCCGGCTCAGTCTGTT 60.376 57.895 29.70 0.00 0.00 3.16
571 651 1.143305 CAGTCTGTTGAAGGTGCTCG 58.857 55.000 0.00 0.00 0.00 5.03
572 652 0.753262 AGTCTGTTGAAGGTGCTCGT 59.247 50.000 0.00 0.00 0.00 4.18
577 657 0.391263 GTTGAAGGTGCTCGTAGGGG 60.391 60.000 0.00 0.00 0.00 4.79
578 658 0.834687 TTGAAGGTGCTCGTAGGGGT 60.835 55.000 0.00 0.00 0.00 4.95
586 666 0.106519 GCTCGTAGGGGTAGGGTGTA 60.107 60.000 0.00 0.00 0.00 2.90
593 673 1.187567 GGGGTAGGGTGTACGTGTGT 61.188 60.000 0.00 0.00 0.00 3.72
604 716 2.162008 TGTACGTGTGTATGAGCGCTTA 59.838 45.455 13.26 8.30 32.11 3.09
605 717 2.579207 ACGTGTGTATGAGCGCTTAT 57.421 45.000 19.33 19.33 0.00 1.73
608 720 2.216488 CGTGTGTATGAGCGCTTATGTC 59.784 50.000 23.64 16.20 0.00 3.06
616 728 2.752903 TGAGCGCTTATGTCTGTACTGA 59.247 45.455 13.26 0.00 0.00 3.41
617 729 3.381590 TGAGCGCTTATGTCTGTACTGAT 59.618 43.478 13.26 0.00 0.00 2.90
618 730 3.711086 AGCGCTTATGTCTGTACTGATG 58.289 45.455 2.64 0.00 0.00 3.07
620 732 3.865745 GCGCTTATGTCTGTACTGATGTT 59.134 43.478 0.00 0.00 0.00 2.71
642 754 2.303163 AAAAAGCAACCAAACGGTCC 57.697 45.000 0.00 0.00 34.92 4.46
643 755 0.462375 AAAAGCAACCAAACGGTCCC 59.538 50.000 0.00 0.00 34.92 4.46
647 759 0.893727 GCAACCAAACGGTCCCATCT 60.894 55.000 0.00 0.00 34.92 2.90
686 798 0.755686 GATCAGGCAGGACGAAGGAT 59.244 55.000 0.00 0.00 0.00 3.24
695 812 0.321653 GGACGAAGGATGGTTGCAGT 60.322 55.000 0.00 0.00 0.00 4.40
825 942 1.785041 CGCGGCCCATACAGAAATGG 61.785 60.000 0.00 0.00 45.20 3.16
854 971 2.433145 CGCCTGCACACACGAGAT 60.433 61.111 0.00 0.00 0.00 2.75
860 977 1.444383 GCACACACGAGATCAGCGA 60.444 57.895 13.84 0.00 0.00 4.93
864 981 2.038837 ACACGAGATCAGCGACGGA 61.039 57.895 13.84 0.00 0.00 4.69
871 988 1.067212 AGATCAGCGACGGATAACACC 59.933 52.381 0.00 0.00 0.00 4.16
874 991 1.153628 AGCGACGGATAACACCAGC 60.154 57.895 0.00 0.00 0.00 4.85
971 1093 2.515901 CCCGATCCCATTCCCACC 59.484 66.667 0.00 0.00 0.00 4.61
975 1097 1.227556 GATCCCATTCCCACCGACG 60.228 63.158 0.00 0.00 0.00 5.12
995 1117 2.040606 TGGGCTCCCTCCCTACAC 59.959 66.667 6.50 0.00 46.67 2.90
1007 1129 4.189580 CTACACCCCCATGGCCCG 62.190 72.222 6.09 0.00 37.83 6.13
1120 1245 2.976840 GCCATTGCGCGAACCAAGA 61.977 57.895 12.10 0.00 0.00 3.02
1181 1319 2.830772 TTCCATTCGAGGTACGTACG 57.169 50.000 18.98 15.01 43.13 3.67
1182 1320 1.737838 TCCATTCGAGGTACGTACGT 58.262 50.000 25.98 25.98 43.13 3.57
1183 1321 2.899976 TCCATTCGAGGTACGTACGTA 58.100 47.619 23.60 23.60 43.13 3.57
1184 1322 2.866156 TCCATTCGAGGTACGTACGTAG 59.134 50.000 27.48 19.26 43.13 3.51
1185 1323 2.609459 CCATTCGAGGTACGTACGTAGT 59.391 50.000 27.48 17.92 42.72 2.73
1186 1324 3.802139 CCATTCGAGGTACGTACGTAGTA 59.198 47.826 27.48 14.22 40.93 1.82
1225 1369 5.515534 CCTCCTCCAATCTTTTCTCTTTGGA 60.516 44.000 3.47 3.47 43.98 3.53
1251 1403 2.406596 TTGGGGACTGGTTTATACGC 57.593 50.000 0.00 0.00 0.00 4.42
1300 1452 0.107361 TATCTCCAGACGTCTGCGGA 60.107 55.000 35.09 30.96 42.47 5.54
1428 1582 2.733945 GAGCGGCTCCAGATCTCC 59.266 66.667 19.20 0.00 0.00 3.71
1435 1589 1.202475 GGCTCCAGATCTCCTTTCGTC 60.202 57.143 0.00 0.00 0.00 4.20
1437 1591 2.481104 GCTCCAGATCTCCTTTCGTCTG 60.481 54.545 0.00 0.00 38.20 3.51
1439 1593 2.593346 CAGATCTCCTTTCGTCTGGG 57.407 55.000 0.00 0.00 35.58 4.45
1440 1594 1.137872 CAGATCTCCTTTCGTCTGGGG 59.862 57.143 0.00 0.00 35.58 4.96
1441 1595 0.179070 GATCTCCTTTCGTCTGGGGC 60.179 60.000 0.00 0.00 0.00 5.80
1442 1596 1.627297 ATCTCCTTTCGTCTGGGGCC 61.627 60.000 0.00 0.00 0.00 5.80
1464 1618 3.375299 CGGGTTTCAGTCAATGGATTCTC 59.625 47.826 0.00 0.00 0.00 2.87
1466 1620 3.375299 GGTTTCAGTCAATGGATTCTCCG 59.625 47.826 0.00 0.00 40.17 4.63
1471 1625 1.936547 GTCAATGGATTCTCCGACTGC 59.063 52.381 0.00 0.00 40.17 4.40
1492 1649 8.268850 ACTGCTTATTTTCATTATCTGAACGT 57.731 30.769 0.00 0.00 43.54 3.99
1511 1668 1.069668 GTACGCCGGGAGTAAATGGAT 59.930 52.381 12.37 0.00 0.00 3.41
1557 1714 2.420642 CAGTGTTGCTGCTGATGTAGT 58.579 47.619 0.00 0.00 38.52 2.73
1619 1776 0.695803 AGAAGGCCCCGAGGATGATT 60.696 55.000 0.00 0.00 33.47 2.57
1673 1830 2.094286 CCTGCTCAACGATCTCTTCAGT 60.094 50.000 0.00 0.00 0.00 3.41
1691 1848 0.242017 GTGAGCTTGGCGAAATGCTT 59.758 50.000 0.00 0.00 45.43 3.91
1703 1879 3.751621 CGAAATGCTTGGTGAGTTCATC 58.248 45.455 0.00 0.00 0.00 2.92
1716 1892 3.251571 GAGTTCATCACCAACCTCGTAC 58.748 50.000 0.00 0.00 0.00 3.67
1718 1894 2.993899 GTTCATCACCAACCTCGTACAG 59.006 50.000 0.00 0.00 0.00 2.74
1722 1898 2.867624 TCACCAACCTCGTACAGTACT 58.132 47.619 9.10 0.00 0.00 2.73
1723 1899 2.555325 TCACCAACCTCGTACAGTACTG 59.445 50.000 21.44 21.44 0.00 2.74
1724 1900 2.295349 CACCAACCTCGTACAGTACTGT 59.705 50.000 30.13 30.13 46.87 3.55
1739 1915 6.988522 ACAGTACTGTACATTACATCACACA 58.011 36.000 26.91 0.00 42.90 3.72
1749 1925 2.195741 ACATCACACAGCATTGCTCT 57.804 45.000 8.54 0.00 36.40 4.09
1750 1926 2.511659 ACATCACACAGCATTGCTCTT 58.488 42.857 8.54 0.00 36.40 2.85
1752 1928 1.241165 TCACACAGCATTGCTCTTGG 58.759 50.000 8.54 0.00 36.40 3.61
1760 1936 0.329261 CATTGCTCTTGGGACCCTGA 59.671 55.000 13.00 9.22 0.00 3.86
1765 1941 1.134250 GCTCTTGGGACCCTGATTCTC 60.134 57.143 13.00 0.00 0.00 2.87
1767 1943 2.170187 CTCTTGGGACCCTGATTCTCAG 59.830 54.545 13.00 0.00 43.91 3.35
1780 1956 0.841289 TTCTCAGTTTTGGGGGTCGT 59.159 50.000 0.00 0.00 0.00 4.34
1781 1957 0.841289 TCTCAGTTTTGGGGGTCGTT 59.159 50.000 0.00 0.00 0.00 3.85
1782 1958 1.213430 TCTCAGTTTTGGGGGTCGTTT 59.787 47.619 0.00 0.00 0.00 3.60
1783 1959 2.028876 CTCAGTTTTGGGGGTCGTTTT 58.971 47.619 0.00 0.00 0.00 2.43
1784 1960 2.429250 CTCAGTTTTGGGGGTCGTTTTT 59.571 45.455 0.00 0.00 0.00 1.94
1809 1987 5.932619 TCTTTTCCATCTGGTTATCTCGA 57.067 39.130 0.00 0.00 36.34 4.04
1819 1997 6.769134 TCTGGTTATCTCGAATGTTACAGA 57.231 37.500 0.00 0.00 0.00 3.41
1820 1998 6.796426 TCTGGTTATCTCGAATGTTACAGAG 58.204 40.000 0.00 0.00 0.00 3.35
1821 1999 6.377429 TCTGGTTATCTCGAATGTTACAGAGT 59.623 38.462 0.00 0.00 32.90 3.24
1822 2000 6.931838 TGGTTATCTCGAATGTTACAGAGTT 58.068 36.000 0.00 0.00 32.90 3.01
1823 2001 8.058667 TGGTTATCTCGAATGTTACAGAGTTA 57.941 34.615 0.00 0.00 32.90 2.24
1826 2004 5.868043 TCTCGAATGTTACAGAGTTACGA 57.132 39.130 0.00 0.00 32.90 3.43
1827 2005 6.432607 TCTCGAATGTTACAGAGTTACGAT 57.567 37.500 0.00 0.00 32.90 3.73
1830 2008 6.614160 TCGAATGTTACAGAGTTACGATTGA 58.386 36.000 0.00 0.00 0.00 2.57
1834 2012 4.525487 TGTTACAGAGTTACGATTGAGGGT 59.475 41.667 0.00 0.00 0.00 4.34
1840 2018 4.954202 AGAGTTACGATTGAGGGTATGTGA 59.046 41.667 0.00 0.00 0.00 3.58
1849 2027 2.101415 TGAGGGTATGTGAGAATCTGCG 59.899 50.000 0.00 0.00 34.92 5.18
1874 2052 6.263842 GTGATGTTGTTATCATCCATGTCCAT 59.736 38.462 0.00 0.00 40.38 3.41
1881 2060 4.717279 ATCATCCATGTCCATGTCATGA 57.283 40.909 21.74 15.84 43.47 3.07
1890 2069 2.109774 TCCATGTCATGATTTTGGGGC 58.890 47.619 14.67 0.00 0.00 5.80
1895 2074 2.166050 TGTCATGATTTTGGGGCGAATG 59.834 45.455 0.00 0.00 0.00 2.67
1899 2078 1.181786 GATTTTGGGGCGAATGGTGA 58.818 50.000 0.00 0.00 0.00 4.02
1914 2093 3.678056 TGGTGAGGTTCAGTATGTGTC 57.322 47.619 0.00 0.00 37.40 3.67
1922 2101 5.431765 AGGTTCAGTATGTGTCATGGATTC 58.568 41.667 0.00 0.00 37.40 2.52
1931 2110 5.353394 TGTGTCATGGATTCCCTTAGTAC 57.647 43.478 0.00 0.00 0.00 2.73
1944 2157 6.198237 TCCCTTAGTACTACAGATCCCTAC 57.802 45.833 0.91 0.00 0.00 3.18
1953 2166 5.661458 ACTACAGATCCCTACGAATGTTTG 58.339 41.667 0.00 0.00 0.00 2.93
1956 2169 4.253685 CAGATCCCTACGAATGTTTGTGT 58.746 43.478 0.00 0.00 0.00 3.72
1973 2186 4.481930 TGTGTTGATGAAAACGTGGATC 57.518 40.909 0.00 0.00 32.47 3.36
1982 2203 7.304735 TGATGAAAACGTGGATCAACTTATTG 58.695 34.615 0.00 0.00 37.14 1.90
1985 2206 4.685169 AACGTGGATCAACTTATTGCAG 57.315 40.909 0.00 0.00 35.63 4.41
2013 2234 0.924090 GCTTCAGCTCCGACATTACG 59.076 55.000 0.00 0.00 38.21 3.18
2018 2239 2.488937 TCAGCTCCGACATTACGTTACA 59.511 45.455 0.00 0.00 0.00 2.41
2021 2242 3.057033 AGCTCCGACATTACGTTACAGTT 60.057 43.478 0.00 0.00 0.00 3.16
2050 2271 2.415090 GCCTGAGACAATGTGAATGTGC 60.415 50.000 0.00 0.00 0.00 4.57
2074 2330 1.661341 CCTGCTTGTCAGTAGCATCC 58.339 55.000 0.00 0.00 46.63 3.51
2093 2349 7.406104 AGCATCCTACTGGTCTTAGAATTTTT 58.594 34.615 0.00 0.00 34.23 1.94
2117 2373 9.719355 TTTATATCACTCAAGTTTGCTACTGAA 57.281 29.630 0.00 0.00 37.12 3.02
2118 2374 9.890629 TTATATCACTCAAGTTTGCTACTGAAT 57.109 29.630 0.00 0.00 37.12 2.57
2119 2375 5.929697 TCACTCAAGTTTGCTACTGAATG 57.070 39.130 0.00 0.00 37.12 2.67
2120 2376 4.214119 TCACTCAAGTTTGCTACTGAATGC 59.786 41.667 0.00 0.00 37.12 3.56
2121 2377 4.214971 CACTCAAGTTTGCTACTGAATGCT 59.785 41.667 0.00 0.00 37.12 3.79
2122 2378 4.453819 ACTCAAGTTTGCTACTGAATGCTC 59.546 41.667 0.00 0.00 37.12 4.26
2123 2379 3.753272 TCAAGTTTGCTACTGAATGCTCC 59.247 43.478 0.00 0.00 37.12 4.70
2124 2380 2.350522 AGTTTGCTACTGAATGCTCCG 58.649 47.619 0.00 0.00 35.19 4.63
2125 2381 2.076863 GTTTGCTACTGAATGCTCCGT 58.923 47.619 0.00 0.00 0.00 4.69
2126 2382 1.725641 TTGCTACTGAATGCTCCGTG 58.274 50.000 0.00 0.00 0.00 4.94
2127 2383 0.108186 TGCTACTGAATGCTCCGTGG 60.108 55.000 0.00 0.00 0.00 4.94
2128 2384 0.175760 GCTACTGAATGCTCCGTGGA 59.824 55.000 0.00 0.00 0.00 4.02
2129 2385 1.804372 GCTACTGAATGCTCCGTGGAG 60.804 57.143 11.67 11.67 44.56 3.86
2130 2386 1.478510 CTACTGAATGCTCCGTGGAGT 59.521 52.381 16.88 0.00 43.70 3.85
2159 2418 6.211515 AGCATTTTTATTCTGATCGAATGCC 58.788 36.000 17.47 0.00 45.31 4.40
2166 2425 3.480505 TCTGATCGAATGCCACATCAT 57.519 42.857 0.00 0.00 0.00 2.45
2191 2450 0.034476 CAGAAGCAGACAGGCAGACA 59.966 55.000 0.00 0.00 35.83 3.41
2311 2570 7.442364 CAGAATGAATCCCATTATGTAAGTCGT 59.558 37.037 0.00 0.00 44.93 4.34
2317 2576 8.888579 AATCCCATTATGTAAGTCGTTTCTAG 57.111 34.615 0.00 0.00 0.00 2.43
2336 2595 6.560253 TCTAGAATTGTGTTTGCTTCCTTC 57.440 37.500 0.00 0.00 0.00 3.46
2339 2598 4.038402 AGAATTGTGTTTGCTTCCTTCCTG 59.962 41.667 0.00 0.00 0.00 3.86
2340 2599 2.435372 TGTGTTTGCTTCCTTCCTGT 57.565 45.000 0.00 0.00 0.00 4.00
2341 2600 2.297701 TGTGTTTGCTTCCTTCCTGTC 58.702 47.619 0.00 0.00 0.00 3.51
2342 2601 1.264288 GTGTTTGCTTCCTTCCTGTCG 59.736 52.381 0.00 0.00 0.00 4.35
2343 2602 1.134220 TGTTTGCTTCCTTCCTGTCGT 60.134 47.619 0.00 0.00 0.00 4.34
2344 2603 2.103432 TGTTTGCTTCCTTCCTGTCGTA 59.897 45.455 0.00 0.00 0.00 3.43
2345 2604 3.135994 GTTTGCTTCCTTCCTGTCGTAA 58.864 45.455 0.00 0.00 0.00 3.18
2346 2605 2.450609 TGCTTCCTTCCTGTCGTAAC 57.549 50.000 0.00 0.00 0.00 2.50
2347 2606 1.689813 TGCTTCCTTCCTGTCGTAACA 59.310 47.619 0.00 0.00 0.00 2.41
2348 2607 2.067013 GCTTCCTTCCTGTCGTAACAC 58.933 52.381 0.00 0.00 0.00 3.32
2349 2608 2.288886 GCTTCCTTCCTGTCGTAACACT 60.289 50.000 0.00 0.00 0.00 3.55
2350 2609 3.318017 CTTCCTTCCTGTCGTAACACTG 58.682 50.000 0.00 0.00 0.00 3.66
2351 2610 2.313317 TCCTTCCTGTCGTAACACTGT 58.687 47.619 0.00 0.00 0.00 3.55
2352 2611 2.696707 TCCTTCCTGTCGTAACACTGTT 59.303 45.455 0.00 0.00 0.00 3.16
2353 2612 3.133362 TCCTTCCTGTCGTAACACTGTTT 59.867 43.478 0.00 0.00 0.00 2.83
2354 2613 3.875134 CCTTCCTGTCGTAACACTGTTTT 59.125 43.478 0.00 0.00 0.00 2.43
2355 2614 4.334481 CCTTCCTGTCGTAACACTGTTTTT 59.666 41.667 0.00 0.00 0.00 1.94
2356 2615 5.473796 TTCCTGTCGTAACACTGTTTTTC 57.526 39.130 0.00 0.00 0.00 2.29
2357 2616 4.761975 TCCTGTCGTAACACTGTTTTTCT 58.238 39.130 0.00 0.00 0.00 2.52
2358 2617 5.180271 TCCTGTCGTAACACTGTTTTTCTT 58.820 37.500 0.00 0.00 0.00 2.52
2359 2618 5.644636 TCCTGTCGTAACACTGTTTTTCTTT 59.355 36.000 0.00 0.00 0.00 2.52
2360 2619 5.963586 CCTGTCGTAACACTGTTTTTCTTTC 59.036 40.000 0.00 0.00 0.00 2.62
2361 2620 6.183360 CCTGTCGTAACACTGTTTTTCTTTCT 60.183 38.462 0.00 0.00 0.00 2.52
2366 2625 8.508875 TCGTAACACTGTTTTTCTTTCTTTTCT 58.491 29.630 0.00 0.00 0.00 2.52
2397 2674 3.834813 GGTATCTGATCCTATGGACTGCA 59.165 47.826 0.00 0.00 32.98 4.41
2408 2685 6.353323 TCCTATGGACTGCAAATTATTTCGA 58.647 36.000 0.00 0.00 0.00 3.71
2436 2715 5.554822 CATAGGATAACTAGGCGAGACTC 57.445 47.826 0.28 0.00 34.56 3.36
2437 2716 2.496111 AGGATAACTAGGCGAGACTCG 58.504 52.381 20.56 20.56 43.89 4.18
2441 2720 0.961358 AACTAGGCGAGACTCGTGCT 60.961 55.000 24.80 3.58 42.81 4.40
2447 2726 1.588861 GGCGAGACTCGTGCTAAAATC 59.411 52.381 24.80 5.83 42.81 2.17
2460 2739 6.543465 TCGTGCTAAAATCATCATTCCAGAAT 59.457 34.615 0.00 0.00 0.00 2.40
2461 2740 7.714813 TCGTGCTAAAATCATCATTCCAGAATA 59.285 33.333 0.00 0.00 0.00 1.75
2462 2741 8.509690 CGTGCTAAAATCATCATTCCAGAATAT 58.490 33.333 0.00 0.00 0.00 1.28
2463 2742 9.837525 GTGCTAAAATCATCATTCCAGAATATC 57.162 33.333 0.00 0.00 0.00 1.63
2464 2743 9.017509 TGCTAAAATCATCATTCCAGAATATCC 57.982 33.333 0.00 0.00 0.00 2.59
2465 2744 9.240734 GCTAAAATCATCATTCCAGAATATCCT 57.759 33.333 0.00 0.00 0.00 3.24
2475 2754 8.659527 TCATTCCAGAATATCCTTATGTTGCTA 58.340 33.333 0.00 0.00 0.00 3.49
2495 2774 6.274579 TGCTACAATGCATTTTATCACATGG 58.725 36.000 9.83 0.00 38.12 3.66
2497 2776 6.757947 GCTACAATGCATTTTATCACATGGTT 59.242 34.615 9.83 0.00 29.63 3.67
2506 2785 8.629158 GCATTTTATCACATGGTTCCTACATAA 58.371 33.333 0.00 0.00 0.00 1.90
2507 2786 9.950680 CATTTTATCACATGGTTCCTACATAAC 57.049 33.333 0.00 0.00 0.00 1.89
2508 2787 9.920946 ATTTTATCACATGGTTCCTACATAACT 57.079 29.630 0.00 0.00 0.00 2.24
2509 2788 9.747898 TTTTATCACATGGTTCCTACATAACTT 57.252 29.630 0.00 0.00 0.00 2.66
2588 2867 0.978907 TGAGCTGCAGGATGAGAACA 59.021 50.000 17.12 0.00 39.69 3.18
2623 2902 5.613358 ACGAAATTCTGGAGCTACAAAAG 57.387 39.130 0.00 0.00 0.00 2.27
2634 2913 2.622436 GCTACAAAAGGAGCTGACGAT 58.378 47.619 0.00 0.00 35.73 3.73
2637 2916 0.449388 CAAAAGGAGCTGACGATGCC 59.551 55.000 0.00 0.00 0.00 4.40
2640 2919 1.260538 AAGGAGCTGACGATGCCTCA 61.261 55.000 0.00 0.00 0.00 3.86
2644 2923 1.523258 GCTGACGATGCCTCATGCT 60.523 57.895 0.00 0.00 42.00 3.79
2646 2925 0.461516 CTGACGATGCCTCATGCTGT 60.462 55.000 0.00 0.00 42.00 4.40
2647 2926 0.741927 TGACGATGCCTCATGCTGTG 60.742 55.000 0.00 0.00 42.00 3.66
2648 2927 0.742281 GACGATGCCTCATGCTGTGT 60.742 55.000 0.00 0.00 42.00 3.72
2654 2966 0.036577 GCCTCATGCTGTGTCTCACT 60.037 55.000 1.72 0.00 35.11 3.41
2661 2973 0.319040 GCTGTGTCTCACTCTGCGAA 60.319 55.000 0.00 0.00 35.11 4.70
2815 3127 4.069232 CTCTTCCCAGACGCGGCA 62.069 66.667 17.71 0.00 0.00 5.69
2870 3182 0.550914 GGAGGCCACCAACCATATCA 59.449 55.000 15.24 0.00 0.00 2.15
2875 3187 1.351707 CACCAACCATATCACGCGC 59.648 57.895 5.73 0.00 0.00 6.86
2905 3217 0.977395 GGTACCCAACAGAGTCAGCT 59.023 55.000 0.00 0.00 0.00 4.24
2959 3271 3.003068 CGAGGATGGAAGATGAACAATGC 59.997 47.826 0.00 0.00 0.00 3.56
2986 3298 1.574428 CACAACCGGCAGTAGCAAC 59.426 57.895 0.00 0.00 44.61 4.17
3034 3346 6.713762 AGAGATTGAGTAGATCAGTTCCAG 57.286 41.667 0.00 0.00 39.68 3.86
3060 3372 3.500299 GTCAGGAAGTTTCTCTTTGAGCC 59.500 47.826 0.00 0.00 36.40 4.70
3114 3427 4.510167 AAATACCAGACTCCATCTTGGG 57.490 45.455 0.00 0.00 38.32 4.12
3117 3430 0.543749 CCAGACTCCATCTTGGGTCC 59.456 60.000 9.92 0.00 38.00 4.46
3151 3464 7.658525 ATGTTAGATGAGAAGATGACACTCT 57.341 36.000 0.00 0.00 0.00 3.24
3182 3495 6.749923 ATCAGAATAGCACCTTTTCTTCAC 57.250 37.500 0.00 0.00 31.38 3.18
3215 3528 6.189677 TGCAACTTATGTTAACACCATAGC 57.810 37.500 11.22 11.42 34.60 2.97
3216 3529 5.163804 TGCAACTTATGTTAACACCATAGCG 60.164 40.000 11.22 0.00 34.60 4.26
3217 3530 5.729454 GCAACTTATGTTAACACCATAGCGG 60.729 44.000 11.22 3.57 36.31 5.52
3220 3533 5.758296 ACTTATGTTAACACCATAGCGGATG 59.242 40.000 11.22 0.00 38.63 3.51
3221 3534 2.285083 TGTTAACACCATAGCGGATGC 58.715 47.619 3.59 0.00 43.24 3.91
3239 3552 6.393171 CGGATGCATATGAACTGATCTAGAA 58.607 40.000 6.97 0.00 0.00 2.10
3241 3554 7.222417 CGGATGCATATGAACTGATCTAGAATC 59.778 40.741 6.97 0.00 0.00 2.52
3303 3619 5.023533 TGGTAGGAGATTGCATACTGAAC 57.976 43.478 0.00 0.00 0.00 3.18
3314 3630 3.621268 TGCATACTGAACTTCGGTAATGC 59.379 43.478 22.63 22.63 41.15 3.56
3325 3641 2.517609 GGTAATGCCGGTCTCCTCT 58.482 57.895 1.90 0.00 0.00 3.69
3326 3642 0.105039 GGTAATGCCGGTCTCCTCTG 59.895 60.000 1.90 0.00 0.00 3.35
3327 3643 1.112113 GTAATGCCGGTCTCCTCTGA 58.888 55.000 1.90 0.00 0.00 3.27
3328 3644 1.480954 GTAATGCCGGTCTCCTCTGAA 59.519 52.381 1.90 0.00 0.00 3.02
3329 3645 0.539051 AATGCCGGTCTCCTCTGAAG 59.461 55.000 1.90 0.00 0.00 3.02
3330 3646 1.333636 ATGCCGGTCTCCTCTGAAGG 61.334 60.000 1.90 0.00 44.89 3.46
3331 3647 2.726351 GCCGGTCTCCTCTGAAGGG 61.726 68.421 1.90 0.00 43.56 3.95
3332 3648 2.060980 CCGGTCTCCTCTGAAGGGG 61.061 68.421 0.00 0.00 45.64 4.79
3333 3649 2.060980 CGGTCTCCTCTGAAGGGGG 61.061 68.421 0.00 0.00 44.22 5.40
3357 3673 2.354604 CCAGAAGAGGAACTGAAGAGGC 60.355 54.545 0.00 0.00 41.55 4.70
3363 3679 3.073650 AGAGGAACTGAAGAGGCAATTGT 59.926 43.478 7.40 0.00 41.55 2.71
3373 3689 0.107654 AGGCAATTGTAGGCGACTCC 60.108 55.000 0.00 0.00 43.67 3.85
3376 3692 1.656652 CAATTGTAGGCGACTCCCTG 58.343 55.000 0.00 0.00 43.67 4.45
3377 3693 1.207089 CAATTGTAGGCGACTCCCTGA 59.793 52.381 0.00 0.00 43.67 3.86
3379 3695 0.606604 TTGTAGGCGACTCCCTGAAC 59.393 55.000 0.00 0.00 43.67 3.18
3406 3737 3.081804 CGTAGAGGGTTTCCTTGCATTT 58.918 45.455 0.00 0.00 45.05 2.32
3418 3749 0.903942 TTGCATTTGGGCCAATCTCC 59.096 50.000 21.65 9.55 0.00 3.71
3420 3751 1.197812 GCATTTGGGCCAATCTCCTT 58.802 50.000 21.65 0.00 0.00 3.36
3421 3752 1.137675 GCATTTGGGCCAATCTCCTTC 59.862 52.381 21.65 1.84 0.00 3.46
3422 3753 1.406539 CATTTGGGCCAATCTCCTTCG 59.593 52.381 21.65 0.00 0.00 3.79
3423 3754 0.404040 TTTGGGCCAATCTCCTTCGT 59.596 50.000 21.65 0.00 0.00 3.85
3424 3755 0.404040 TTGGGCCAATCTCCTTCGTT 59.596 50.000 16.66 0.00 0.00 3.85
3425 3756 1.281419 TGGGCCAATCTCCTTCGTTA 58.719 50.000 2.13 0.00 0.00 3.18
3428 3759 1.604278 GGCCAATCTCCTTCGTTATGC 59.396 52.381 0.00 0.00 0.00 3.14
3429 3760 2.565841 GCCAATCTCCTTCGTTATGCT 58.434 47.619 0.00 0.00 0.00 3.79
3430 3761 2.945668 GCCAATCTCCTTCGTTATGCTT 59.054 45.455 0.00 0.00 0.00 3.91
3431 3762 3.002759 GCCAATCTCCTTCGTTATGCTTC 59.997 47.826 0.00 0.00 0.00 3.86
3432 3763 3.561725 CCAATCTCCTTCGTTATGCTTCC 59.438 47.826 0.00 0.00 0.00 3.46
3433 3764 4.191544 CAATCTCCTTCGTTATGCTTCCA 58.808 43.478 0.00 0.00 0.00 3.53
3434 3765 4.696479 ATCTCCTTCGTTATGCTTCCAT 57.304 40.909 0.00 0.00 35.44 3.41
3436 3767 3.134458 CTCCTTCGTTATGCTTCCATCC 58.866 50.000 0.00 0.00 32.85 3.51
3438 3769 2.550978 CTTCGTTATGCTTCCATCCGT 58.449 47.619 0.00 0.00 32.85 4.69
3439 3770 2.218953 TCGTTATGCTTCCATCCGTC 57.781 50.000 0.00 0.00 32.85 4.79
3440 3771 1.478916 TCGTTATGCTTCCATCCGTCA 59.521 47.619 0.00 0.00 32.85 4.35
3441 3772 2.093921 TCGTTATGCTTCCATCCGTCAA 60.094 45.455 0.00 0.00 32.85 3.18
3442 3773 2.872245 CGTTATGCTTCCATCCGTCAAT 59.128 45.455 0.00 0.00 32.85 2.57
3444 3775 4.150627 CGTTATGCTTCCATCCGTCAATAG 59.849 45.833 0.00 0.00 32.85 1.73
3445 3776 2.620251 TGCTTCCATCCGTCAATAGG 57.380 50.000 0.00 0.00 0.00 2.57
3448 3779 0.105964 TTCCATCCGTCAATAGGCCG 59.894 55.000 0.00 0.00 0.00 6.13
3449 3780 1.046472 TCCATCCGTCAATAGGCCGT 61.046 55.000 0.00 0.00 0.00 5.68
3450 3781 0.600255 CCATCCGTCAATAGGCCGTC 60.600 60.000 0.00 0.00 0.00 4.79
3451 3782 0.389391 CATCCGTCAATAGGCCGTCT 59.611 55.000 0.00 0.00 0.00 4.18
3452 3783 1.120530 ATCCGTCAATAGGCCGTCTT 58.879 50.000 0.00 0.00 0.00 3.01
3453 3784 0.458669 TCCGTCAATAGGCCGTCTTC 59.541 55.000 0.00 0.00 0.00 2.87
3454 3785 0.870307 CCGTCAATAGGCCGTCTTCG 60.870 60.000 0.00 0.00 0.00 3.79
3455 3786 0.099968 CGTCAATAGGCCGTCTTCGA 59.900 55.000 0.00 0.00 39.71 3.71
3456 3787 1.557651 GTCAATAGGCCGTCTTCGAC 58.442 55.000 0.00 0.00 39.71 4.20
3457 3788 1.134560 GTCAATAGGCCGTCTTCGACT 59.865 52.381 0.00 0.00 39.71 4.18
3458 3789 2.357009 GTCAATAGGCCGTCTTCGACTA 59.643 50.000 0.00 0.00 39.71 2.59
3459 3790 3.018856 TCAATAGGCCGTCTTCGACTAA 58.981 45.455 0.00 0.00 39.71 2.24
3460 3791 3.444742 TCAATAGGCCGTCTTCGACTAAA 59.555 43.478 0.00 0.00 39.71 1.85
3461 3792 4.098960 TCAATAGGCCGTCTTCGACTAAAT 59.901 41.667 0.00 0.00 39.71 1.40
3462 3793 5.300034 TCAATAGGCCGTCTTCGACTAAATA 59.700 40.000 0.00 0.00 39.71 1.40
3463 3794 5.979288 ATAGGCCGTCTTCGACTAAATAT 57.021 39.130 0.00 0.00 39.71 1.28
3464 3795 7.175467 TCAATAGGCCGTCTTCGACTAAATATA 59.825 37.037 0.00 0.00 39.71 0.86
3465 3796 5.979288 AGGCCGTCTTCGACTAAATATAT 57.021 39.130 0.00 0.00 39.71 0.86
3466 3797 5.710984 AGGCCGTCTTCGACTAAATATATG 58.289 41.667 0.00 0.00 39.71 1.78
3467 3798 5.475909 AGGCCGTCTTCGACTAAATATATGA 59.524 40.000 0.00 0.00 39.71 2.15
3468 3799 5.800941 GGCCGTCTTCGACTAAATATATGAG 59.199 44.000 0.00 0.00 39.71 2.90
3469 3800 6.380190 GCCGTCTTCGACTAAATATATGAGT 58.620 40.000 1.10 1.10 39.71 3.41
3470 3801 6.862090 GCCGTCTTCGACTAAATATATGAGTT 59.138 38.462 2.84 0.00 39.71 3.01
3471 3802 7.381678 GCCGTCTTCGACTAAATATATGAGTTT 59.618 37.037 2.84 0.00 39.71 2.66
3472 3803 8.691727 CCGTCTTCGACTAAATATATGAGTTTG 58.308 37.037 2.84 0.73 39.71 2.93
3473 3804 9.234384 CGTCTTCGACTAAATATATGAGTTTGT 57.766 33.333 2.84 0.00 39.71 2.83
3590 3921 4.482386 GCTATCGTGTGAACTGTGACTTA 58.518 43.478 0.00 0.00 0.00 2.24
3609 3941 8.129211 GTGACTTACTGTTTACTGAAAAGCAAT 58.871 33.333 0.00 0.00 0.00 3.56
3615 3947 0.525761 TACTGAAAAGCAATGCGCCC 59.474 50.000 4.18 0.00 44.04 6.13
3624 3956 0.807275 GCAATGCGCCCCTCAAATTC 60.807 55.000 4.18 0.00 32.94 2.17
3644 3976 5.551305 TTCTTGGAGAAGAATGTGACTGA 57.449 39.130 0.00 0.00 42.23 3.41
3655 3987 3.623906 ATGTGACTGAATGTCCTCCTG 57.376 47.619 0.00 0.00 44.75 3.86
3701 4033 1.272807 CCCTCGAGGTAGTTTCCCAA 58.727 55.000 29.25 0.00 0.00 4.12
3725 4057 3.149005 TCCGGCTTGGTTTCACTAAAT 57.851 42.857 0.00 0.00 39.52 1.40
3726 4058 3.492337 TCCGGCTTGGTTTCACTAAATT 58.508 40.909 0.00 0.00 39.52 1.82
3727 4059 3.254657 TCCGGCTTGGTTTCACTAAATTG 59.745 43.478 0.00 0.00 39.52 2.32
3728 4060 2.986479 CGGCTTGGTTTCACTAAATTGC 59.014 45.455 0.00 0.00 0.00 3.56
3729 4061 3.305335 CGGCTTGGTTTCACTAAATTGCT 60.305 43.478 0.00 0.00 0.00 3.91
3730 4062 4.083003 CGGCTTGGTTTCACTAAATTGCTA 60.083 41.667 0.00 0.00 0.00 3.49
3731 4063 5.563867 CGGCTTGGTTTCACTAAATTGCTAA 60.564 40.000 0.00 0.00 0.00 3.09
3732 4064 6.220201 GGCTTGGTTTCACTAAATTGCTAAA 58.780 36.000 0.00 0.00 0.00 1.85
3733 4065 6.704050 GGCTTGGTTTCACTAAATTGCTAAAA 59.296 34.615 0.00 0.00 0.00 1.52
3734 4066 7.225734 GGCTTGGTTTCACTAAATTGCTAAAAA 59.774 33.333 0.00 0.00 0.00 1.94
3735 4067 8.061857 GCTTGGTTTCACTAAATTGCTAAAAAC 58.938 33.333 0.00 0.00 0.00 2.43
3736 4068 8.426881 TTGGTTTCACTAAATTGCTAAAAACC 57.573 30.769 13.87 13.87 42.88 3.27
3738 4070 8.041323 TGGTTTCACTAAATTGCTAAAAACCAA 58.959 29.630 18.17 8.15 46.71 3.67
3739 4071 8.332464 GGTTTCACTAAATTGCTAAAAACCAAC 58.668 33.333 15.06 0.00 42.39 3.77
3740 4072 8.874816 GTTTCACTAAATTGCTAAAAACCAACA 58.125 29.630 0.00 0.00 0.00 3.33
3741 4073 7.995463 TCACTAAATTGCTAAAAACCAACAC 57.005 32.000 0.00 0.00 0.00 3.32
3742 4074 7.548097 TCACTAAATTGCTAAAAACCAACACA 58.452 30.769 0.00 0.00 0.00 3.72
3743 4075 8.035394 TCACTAAATTGCTAAAAACCAACACAA 58.965 29.630 0.00 0.00 0.00 3.33
3744 4076 8.113675 CACTAAATTGCTAAAAACCAACACAAC 58.886 33.333 0.00 0.00 0.00 3.32
3745 4077 6.429791 AAATTGCTAAAAACCAACACAACC 57.570 33.333 0.00 0.00 0.00 3.77
3746 4078 4.537135 TTGCTAAAAACCAACACAACCA 57.463 36.364 0.00 0.00 0.00 3.67
3747 4079 4.537135 TGCTAAAAACCAACACAACCAA 57.463 36.364 0.00 0.00 0.00 3.67
3748 4080 4.894784 TGCTAAAAACCAACACAACCAAA 58.105 34.783 0.00 0.00 0.00 3.28
3753 4085 3.625649 AACCAACACAACCAAATTGCT 57.374 38.095 0.00 0.00 42.62 3.91
3755 4087 4.744795 ACCAACACAACCAAATTGCTAA 57.255 36.364 0.00 0.00 42.62 3.09
3762 4094 5.940470 ACACAACCAAATTGCTAAAAACCAA 59.060 32.000 0.00 0.00 42.62 3.67
3779 4111 1.795872 CCAACACAATTGCGTCGAGTA 59.204 47.619 5.05 0.00 0.00 2.59
3789 4121 1.525197 TGCGTCGAGTAGTGCAAAAAG 59.475 47.619 0.00 0.00 33.80 2.27
3790 4122 1.136336 GCGTCGAGTAGTGCAAAAAGG 60.136 52.381 0.00 0.00 0.00 3.11
3794 4126 1.197721 CGAGTAGTGCAAAAAGGCCTG 59.802 52.381 5.69 0.00 0.00 4.85
3801 4134 1.209019 TGCAAAAAGGCCTGCAGAAAA 59.791 42.857 17.39 0.00 43.44 2.29
3814 4147 5.108517 CCTGCAGAAAACTAAAAGTTTGCA 58.891 37.500 17.39 13.02 46.78 4.08
3824 4157 5.220135 AACTAAAAGTTTGCAAAAAGCGTCG 60.220 36.000 14.67 2.98 37.21 5.12
3877 4210 6.068670 ACTAAACACTTGGTTAAGAGCCATT 58.931 36.000 0.00 0.00 39.29 3.16
3879 4212 4.853924 ACACTTGGTTAAGAGCCATTTG 57.146 40.909 0.00 0.00 37.36 2.32
3885 4230 5.389859 TGGTTAAGAGCCATTTGATGTTG 57.610 39.130 0.00 0.00 0.00 3.33
3893 4238 5.125097 AGAGCCATTTGATGTTGAATCTGAC 59.875 40.000 0.00 0.00 0.00 3.51
3900 4245 6.358974 TTGATGTTGAATCTGACTAGTGGA 57.641 37.500 0.00 0.00 0.00 4.02
3903 4248 7.044181 TGATGTTGAATCTGACTAGTGGATTC 58.956 38.462 25.75 25.75 43.03 2.52
3906 4251 4.023980 TGAATCTGACTAGTGGATTCCGT 58.976 43.478 27.51 9.68 42.45 4.69
3912 4257 3.513912 TGACTAGTGGATTCCGTTGTCAT 59.486 43.478 0.00 0.00 0.00 3.06
3948 4293 5.242393 CACCAAAATCTCTCACCATTTGACT 59.758 40.000 0.00 0.00 33.86 3.41
3957 4302 6.016024 TCTCTCACCATTTGACTGGAAAATTG 60.016 38.462 0.00 0.00 39.73 2.32
3958 4303 5.598005 TCTCACCATTTGACTGGAAAATTGT 59.402 36.000 0.00 0.00 39.73 2.71
3959 4304 5.841810 TCACCATTTGACTGGAAAATTGTC 58.158 37.500 0.00 0.00 39.73 3.18
3960 4305 5.598005 TCACCATTTGACTGGAAAATTGTCT 59.402 36.000 0.00 0.00 39.73 3.41
3961 4306 6.098124 TCACCATTTGACTGGAAAATTGTCTT 59.902 34.615 0.00 0.00 39.73 3.01
3962 4307 6.201425 CACCATTTGACTGGAAAATTGTCTTG 59.799 38.462 0.00 0.00 39.73 3.02
3963 4308 6.098124 ACCATTTGACTGGAAAATTGTCTTGA 59.902 34.615 0.00 0.00 39.73 3.02
3964 4309 7.156673 CCATTTGACTGGAAAATTGTCTTGAT 58.843 34.615 0.00 0.00 38.69 2.57
3965 4310 7.658575 CCATTTGACTGGAAAATTGTCTTGATT 59.341 33.333 0.00 0.00 38.69 2.57
3966 4311 9.048446 CATTTGACTGGAAAATTGTCTTGATTT 57.952 29.630 0.00 0.00 0.00 2.17
3967 4312 9.617523 ATTTGACTGGAAAATTGTCTTGATTTT 57.382 25.926 0.00 0.00 38.89 1.82
3968 4313 9.447157 TTTGACTGGAAAATTGTCTTGATTTTT 57.553 25.926 0.00 0.00 36.96 1.94
3990 4335 7.696992 TTTTCTAAGCGGTGGAAAATTATCT 57.303 32.000 18.32 0.00 35.10 1.98
3991 4336 7.696992 TTTCTAAGCGGTGGAAAATTATCTT 57.303 32.000 11.73 0.00 0.00 2.40
3992 4337 6.677781 TCTAAGCGGTGGAAAATTATCTTG 57.322 37.500 0.00 0.00 0.00 3.02
3993 4338 6.411376 TCTAAGCGGTGGAAAATTATCTTGA 58.589 36.000 0.00 0.00 0.00 3.02
3994 4339 7.054124 TCTAAGCGGTGGAAAATTATCTTGAT 58.946 34.615 0.00 0.00 0.00 2.57
3995 4340 5.505173 AGCGGTGGAAAATTATCTTGATG 57.495 39.130 0.00 0.00 0.00 3.07
3996 4341 5.192927 AGCGGTGGAAAATTATCTTGATGA 58.807 37.500 0.00 0.00 0.00 2.92
3997 4342 5.652014 AGCGGTGGAAAATTATCTTGATGAA 59.348 36.000 0.00 0.00 0.00 2.57
3998 4343 5.973565 GCGGTGGAAAATTATCTTGATGAAG 59.026 40.000 0.00 0.00 0.00 3.02
3999 4344 6.498304 CGGTGGAAAATTATCTTGATGAAGG 58.502 40.000 0.00 0.00 0.00 3.46
4000 4345 6.460123 CGGTGGAAAATTATCTTGATGAAGGG 60.460 42.308 0.00 0.00 0.00 3.95
4001 4346 6.276091 GTGGAAAATTATCTTGATGAAGGGC 58.724 40.000 0.00 0.00 0.00 5.19
4002 4347 5.363580 TGGAAAATTATCTTGATGAAGGGCC 59.636 40.000 0.00 0.00 0.00 5.80
4003 4348 5.221521 GGAAAATTATCTTGATGAAGGGCCC 60.222 44.000 16.46 16.46 0.00 5.80
4004 4349 4.541250 AATTATCTTGATGAAGGGCCCA 57.459 40.909 27.56 2.74 0.00 5.36
4005 4350 3.297134 TTATCTTGATGAAGGGCCCAC 57.703 47.619 27.56 18.37 0.00 4.61
4006 4351 0.259938 ATCTTGATGAAGGGCCCACC 59.740 55.000 27.56 15.90 40.67 4.61
4015 4360 2.930562 GGGCCCACCTGTCACTCT 60.931 66.667 19.95 0.00 35.85 3.24
4016 4361 2.665603 GGCCCACCTGTCACTCTC 59.334 66.667 0.00 0.00 0.00 3.20
4017 4362 1.915769 GGCCCACCTGTCACTCTCT 60.916 63.158 0.00 0.00 0.00 3.10
4018 4363 1.594310 GCCCACCTGTCACTCTCTC 59.406 63.158 0.00 0.00 0.00 3.20
4019 4364 1.188219 GCCCACCTGTCACTCTCTCA 61.188 60.000 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.109226 GGAGTGACGAAAGGAGGACG 60.109 60.000 0.00 0.00 0.00 4.79
23 24 0.731855 GGAAGTACGTGCGGAGTGAC 60.732 60.000 0.00 0.00 0.00 3.67
36 37 1.735198 CGACGCCGCAAAGGAAGTA 60.735 57.895 0.00 0.00 45.00 2.24
51 52 2.578981 GCGGTTCCTAGCGTCGAC 60.579 66.667 5.18 5.18 46.45 4.20
53 54 2.879462 GTGCGGTTCCTAGCGTCG 60.879 66.667 0.00 0.00 46.45 5.12
55 56 4.430765 CGGTGCGGTTCCTAGCGT 62.431 66.667 0.00 0.00 46.45 5.07
100 109 3.392440 GTCCGACACGACGTGCAC 61.392 66.667 27.11 19.35 36.98 4.57
169 178 6.934645 AGTTAACAGCTACACATAACACACAT 59.065 34.615 8.61 0.00 0.00 3.21
171 180 6.645415 AGAGTTAACAGCTACACATAACACAC 59.355 38.462 8.61 0.00 0.00 3.82
192 201 1.933021 TACCGGACATGGTTCAGAGT 58.067 50.000 9.46 0.00 43.56 3.24
200 209 1.214367 GTTGCGTATACCGGACATGG 58.786 55.000 9.46 0.00 36.27 3.66
245 262 2.959484 GCACTGGCTGGGCTGACTA 61.959 63.158 11.75 0.00 43.01 2.59
252 269 2.113774 TGTTCTGCACTGGCTGGG 59.886 61.111 0.00 0.00 41.91 4.45
254 271 1.102809 TTGGTGTTCTGCACTGGCTG 61.103 55.000 0.00 0.00 46.86 4.85
256 273 0.249031 GTTTGGTGTTCTGCACTGGC 60.249 55.000 0.00 0.00 46.86 4.85
266 283 1.729470 TTGGCATCGCGTTTGGTGTT 61.729 50.000 5.77 0.00 0.00 3.32
295 312 2.404995 GCAGGCTGCTTGCACTAGG 61.405 63.158 31.37 0.00 45.15 3.02
378 401 4.510340 GTCACTTGACATACTCGTTTTGGT 59.490 41.667 4.43 0.00 44.18 3.67
393 416 4.214119 GCTTGCATAGTTTCTGTCACTTGA 59.786 41.667 0.00 0.00 0.00 3.02
401 424 1.814394 TGGCTGCTTGCATAGTTTCTG 59.186 47.619 0.00 0.00 45.15 3.02
407 430 1.542915 ACTGTTTGGCTGCTTGCATAG 59.457 47.619 0.00 0.00 45.15 2.23
408 431 1.541147 GACTGTTTGGCTGCTTGCATA 59.459 47.619 0.00 0.00 45.15 3.14
409 432 0.316204 GACTGTTTGGCTGCTTGCAT 59.684 50.000 0.00 0.00 45.15 3.96
410 433 1.735360 GACTGTTTGGCTGCTTGCA 59.265 52.632 0.00 0.00 45.15 4.08
411 434 1.370900 CGACTGTTTGGCTGCTTGC 60.371 57.895 0.00 0.00 41.94 4.01
412 435 1.283793 CCGACTGTTTGGCTGCTTG 59.716 57.895 0.00 0.00 0.00 4.01
413 436 1.898574 CCCGACTGTTTGGCTGCTT 60.899 57.895 0.00 0.00 0.00 3.91
414 437 2.281761 CCCGACTGTTTGGCTGCT 60.282 61.111 0.00 0.00 0.00 4.24
415 438 1.896660 TTCCCGACTGTTTGGCTGC 60.897 57.895 0.00 0.00 0.00 5.25
416 439 1.515521 GGTTCCCGACTGTTTGGCTG 61.516 60.000 0.00 0.00 0.00 4.85
417 440 1.228154 GGTTCCCGACTGTTTGGCT 60.228 57.895 0.00 0.00 0.00 4.75
418 441 1.104577 TTGGTTCCCGACTGTTTGGC 61.105 55.000 0.00 0.00 0.00 4.52
419 442 0.666374 GTTGGTTCCCGACTGTTTGG 59.334 55.000 0.00 0.00 35.15 3.28
420 443 0.666374 GGTTGGTTCCCGACTGTTTG 59.334 55.000 0.87 0.00 37.99 2.93
421 444 0.549469 AGGTTGGTTCCCGACTGTTT 59.451 50.000 0.87 0.00 37.99 2.83
422 445 0.179029 CAGGTTGGTTCCCGACTGTT 60.179 55.000 0.87 0.00 37.99 3.16
423 446 1.342672 ACAGGTTGGTTCCCGACTGT 61.343 55.000 0.87 0.00 37.99 3.55
424 447 0.884704 CACAGGTTGGTTCCCGACTG 60.885 60.000 0.87 0.00 37.99 3.51
425 448 1.450211 CACAGGTTGGTTCCCGACT 59.550 57.895 0.87 0.00 37.99 4.18
426 449 1.599797 CCACAGGTTGGTTCCCGAC 60.600 63.158 0.00 0.00 41.10 4.79
427 450 2.833227 CCACAGGTTGGTTCCCGA 59.167 61.111 0.00 0.00 41.10 5.14
437 460 3.244911 CCTCTAACCATTCAACCACAGGT 60.245 47.826 0.00 0.00 37.65 4.00
447 470 2.572104 ACCACTGTCCCTCTAACCATTC 59.428 50.000 0.00 0.00 0.00 2.67
448 471 2.632537 ACCACTGTCCCTCTAACCATT 58.367 47.619 0.00 0.00 0.00 3.16
472 495 1.614413 GACGAACCCTGATAGGCTAGG 59.386 57.143 0.00 0.00 32.73 3.02
473 496 2.554893 GAGACGAACCCTGATAGGCTAG 59.445 54.545 0.00 0.00 32.73 3.42
474 497 2.584236 GAGACGAACCCTGATAGGCTA 58.416 52.381 0.00 0.00 32.73 3.93
490 513 0.175760 TAATGCGAGCACCAGGAGAC 59.824 55.000 0.00 0.00 0.00 3.36
491 514 1.123077 ATAATGCGAGCACCAGGAGA 58.877 50.000 0.00 0.00 0.00 3.71
492 515 1.869767 GAATAATGCGAGCACCAGGAG 59.130 52.381 0.00 0.00 0.00 3.69
498 521 2.218759 CACCGTAGAATAATGCGAGCAC 59.781 50.000 0.00 0.00 0.00 4.40
500 523 2.471743 GTCACCGTAGAATAATGCGAGC 59.528 50.000 0.00 0.00 0.00 5.03
509 532 8.842280 TGAAATTTACAAAAGTCACCGTAGAAT 58.158 29.630 0.00 0.00 0.00 2.40
510 533 8.211116 TGAAATTTACAAAAGTCACCGTAGAA 57.789 30.769 0.00 0.00 0.00 2.10
512 535 8.844441 TTTGAAATTTACAAAAGTCACCGTAG 57.156 30.769 11.11 0.00 34.89 3.51
514 537 8.599774 CATTTTGAAATTTACAAAAGTCACCGT 58.400 29.630 21.76 9.87 45.74 4.83
515 538 8.812329 TCATTTTGAAATTTACAAAAGTCACCG 58.188 29.630 21.76 12.50 45.74 4.94
520 543 9.934190 GCATGTCATTTTGAAATTTACAAAAGT 57.066 25.926 21.76 13.53 45.74 2.66
521 544 9.384682 GGCATGTCATTTTGAAATTTACAAAAG 57.615 29.630 21.76 16.78 45.74 2.27
523 546 7.307632 CCGGCATGTCATTTTGAAATTTACAAA 60.308 33.333 0.00 10.04 35.81 2.83
525 605 5.636965 CCGGCATGTCATTTTGAAATTTACA 59.363 36.000 0.00 0.00 0.00 2.41
532 612 1.202114 GAGCCGGCATGTCATTTTGAA 59.798 47.619 31.54 0.00 0.00 2.69
533 613 0.810648 GAGCCGGCATGTCATTTTGA 59.189 50.000 31.54 0.00 0.00 2.69
537 617 0.745845 GACTGAGCCGGCATGTCATT 60.746 55.000 31.54 17.84 0.00 2.57
542 622 1.376424 AACAGACTGAGCCGGCATG 60.376 57.895 31.54 19.90 0.00 4.06
545 625 1.294659 CTTCAACAGACTGAGCCGGC 61.295 60.000 21.89 21.89 0.00 6.13
546 626 0.671781 CCTTCAACAGACTGAGCCGG 60.672 60.000 10.08 0.00 0.00 6.13
549 629 0.871057 GCACCTTCAACAGACTGAGC 59.129 55.000 10.08 0.00 0.00 4.26
552 632 1.143305 CGAGCACCTTCAACAGACTG 58.857 55.000 0.00 0.00 0.00 3.51
558 638 0.391263 CCCCTACGAGCACCTTCAAC 60.391 60.000 0.00 0.00 0.00 3.18
560 640 0.040058 TACCCCTACGAGCACCTTCA 59.960 55.000 0.00 0.00 0.00 3.02
571 651 1.106285 CACGTACACCCTACCCCTAC 58.894 60.000 0.00 0.00 0.00 3.18
572 652 0.704076 ACACGTACACCCTACCCCTA 59.296 55.000 0.00 0.00 0.00 3.53
577 657 3.733077 GCTCATACACACGTACACCCTAC 60.733 52.174 0.00 0.00 0.00 3.18
578 658 2.424601 GCTCATACACACGTACACCCTA 59.575 50.000 0.00 0.00 0.00 3.53
586 666 2.193447 CATAAGCGCTCATACACACGT 58.807 47.619 12.06 0.00 0.00 4.49
593 673 4.578928 TCAGTACAGACATAAGCGCTCATA 59.421 41.667 12.06 0.00 0.00 2.15
632 744 2.854522 GTCAGATGGGACCGTTTGG 58.145 57.895 1.76 0.00 42.84 3.28
639 751 1.134521 TGCAATACGGTCAGATGGGAC 60.135 52.381 0.00 0.00 37.06 4.46
641 753 1.299541 GTGCAATACGGTCAGATGGG 58.700 55.000 0.00 0.00 0.00 4.00
686 798 2.908428 CCAGCTGCACTGCAACCA 60.908 61.111 8.66 0.00 45.78 3.67
695 812 4.994471 CTCGTGCCACCAGCTGCA 62.994 66.667 8.66 0.00 44.23 4.41
846 963 1.377366 ATCCGTCGCTGATCTCGTGT 61.377 55.000 7.59 0.00 0.00 4.49
847 964 0.586802 TATCCGTCGCTGATCTCGTG 59.413 55.000 7.59 0.00 0.00 4.35
848 965 1.002684 GTTATCCGTCGCTGATCTCGT 60.003 52.381 7.59 0.00 0.00 4.18
853 970 0.821517 TGGTGTTATCCGTCGCTGAT 59.178 50.000 0.00 0.00 0.00 2.90
854 971 0.172578 CTGGTGTTATCCGTCGCTGA 59.827 55.000 0.00 0.00 0.00 4.26
860 977 1.298667 GTGGGCTGGTGTTATCCGT 59.701 57.895 0.00 0.00 0.00 4.69
864 981 1.377202 CTGCGTGGGCTGGTGTTAT 60.377 57.895 0.00 0.00 40.82 1.89
959 1081 4.090588 GCGTCGGTGGGAATGGGA 62.091 66.667 0.00 0.00 0.00 4.37
1120 1245 2.262915 CCGCCTCGCTTCTCTGTT 59.737 61.111 0.00 0.00 0.00 3.16
1139 1264 1.186200 GATTGGAGGAAAGGGTTGCC 58.814 55.000 0.00 0.00 0.00 4.52
1181 1319 3.626670 AGGCAGACGATGTACTGTACTAC 59.373 47.826 17.98 10.97 36.62 2.73
1182 1320 3.875727 GAGGCAGACGATGTACTGTACTA 59.124 47.826 17.98 6.12 36.62 1.82
1183 1321 2.683867 GAGGCAGACGATGTACTGTACT 59.316 50.000 17.98 4.82 36.62 2.73
1184 1322 2.223525 GGAGGCAGACGATGTACTGTAC 60.224 54.545 10.98 10.98 36.62 2.90
1185 1323 2.022195 GGAGGCAGACGATGTACTGTA 58.978 52.381 0.00 0.00 36.62 2.74
1186 1324 0.818296 GGAGGCAGACGATGTACTGT 59.182 55.000 0.00 0.00 36.62 3.55
1187 1325 1.066303 GAGGAGGCAGACGATGTACTG 59.934 57.143 0.00 0.00 37.22 2.74
1188 1326 1.394618 GAGGAGGCAGACGATGTACT 58.605 55.000 0.00 0.00 0.00 2.73
1189 1327 0.386113 GGAGGAGGCAGACGATGTAC 59.614 60.000 0.00 0.00 0.00 2.90
1193 1337 0.755686 GATTGGAGGAGGCAGACGAT 59.244 55.000 0.00 0.00 0.00 3.73
1225 1369 3.274281 AAACCAGTCCCCAATCCAAAT 57.726 42.857 0.00 0.00 0.00 2.32
1300 1452 1.377725 CGACCATGCCTTTCCTGCT 60.378 57.895 0.00 0.00 0.00 4.24
1384 1537 1.277580 AAGAGGCCTCACCCATGGAG 61.278 60.000 33.90 5.95 40.58 3.86
1428 1582 4.778143 CCCGGCCCCAGACGAAAG 62.778 72.222 0.00 0.00 0.00 2.62
1435 1589 3.920093 GACTGAAACCCGGCCCCAG 62.920 68.421 0.00 2.72 0.00 4.45
1437 1591 2.781431 ATTGACTGAAACCCGGCCCC 62.781 60.000 0.00 0.00 0.00 5.80
1439 1593 1.595093 CCATTGACTGAAACCCGGCC 61.595 60.000 0.00 0.00 0.00 6.13
1440 1594 0.608035 TCCATTGACTGAAACCCGGC 60.608 55.000 0.00 0.00 0.00 6.13
1441 1595 2.128771 ATCCATTGACTGAAACCCGG 57.871 50.000 0.00 0.00 0.00 5.73
1442 1596 3.347216 AGAATCCATTGACTGAAACCCG 58.653 45.455 0.00 0.00 0.00 5.28
1464 1618 7.482654 TCAGATAATGAAAATAAGCAGTCGG 57.517 36.000 0.00 0.00 34.02 4.79
1492 1649 1.069513 CATCCATTTACTCCCGGCGTA 59.930 52.381 6.01 0.00 0.00 4.42
1539 1696 2.673368 GGTACTACATCAGCAGCAACAC 59.327 50.000 0.00 0.00 0.00 3.32
1557 1714 1.143183 GCCTGCGGATCGAAAGGTA 59.857 57.895 0.00 0.00 35.59 3.08
1619 1776 1.984570 CTCCCTCTCGGCCTTGTGA 60.985 63.158 0.00 0.00 0.00 3.58
1673 1830 0.241749 CAAGCATTTCGCCAAGCTCA 59.758 50.000 0.00 0.00 44.04 4.26
1703 1879 2.295349 ACAGTACTGTACGAGGTTGGTG 59.705 50.000 26.91 5.39 42.90 4.17
1716 1892 6.035005 GCTGTGTGATGTAATGTACAGTACTG 59.965 42.308 27.91 21.44 42.77 2.74
1718 1894 5.867174 TGCTGTGTGATGTAATGTACAGTAC 59.133 40.000 23.11 23.11 42.77 2.73
1722 1898 5.391843 GCAATGCTGTGTGATGTAATGTACA 60.392 40.000 0.00 0.00 43.80 2.90
1723 1899 5.030295 GCAATGCTGTGTGATGTAATGTAC 58.970 41.667 0.00 0.00 0.00 2.90
1724 1900 4.943093 AGCAATGCTGTGTGATGTAATGTA 59.057 37.500 7.07 0.00 37.57 2.29
1728 1904 3.678289 AGAGCAATGCTGTGTGATGTAA 58.322 40.909 14.48 0.00 39.88 2.41
1729 1905 3.339253 AGAGCAATGCTGTGTGATGTA 57.661 42.857 14.48 0.00 39.88 2.29
1730 1906 2.195741 AGAGCAATGCTGTGTGATGT 57.804 45.000 14.48 0.00 39.88 3.06
1731 1907 2.415491 CCAAGAGCAATGCTGTGTGATG 60.415 50.000 14.48 3.39 39.88 3.07
1732 1908 1.816835 CCAAGAGCAATGCTGTGTGAT 59.183 47.619 14.48 0.00 39.88 3.06
1733 1909 1.241165 CCAAGAGCAATGCTGTGTGA 58.759 50.000 14.48 0.00 39.88 3.58
1734 1910 0.242825 CCCAAGAGCAATGCTGTGTG 59.757 55.000 14.48 9.76 39.88 3.82
1735 1911 0.111061 TCCCAAGAGCAATGCTGTGT 59.889 50.000 14.48 0.00 39.88 3.72
1739 1915 1.000396 GGGTCCCAAGAGCAATGCT 60.000 57.895 7.79 7.79 42.52 3.79
1760 1936 1.423921 ACGACCCCCAAAACTGAGAAT 59.576 47.619 0.00 0.00 0.00 2.40
1765 1941 2.971660 AAAAACGACCCCCAAAACTG 57.028 45.000 0.00 0.00 0.00 3.16
1783 1959 7.663905 TCGAGATAACCAGATGGAAAAGAAAAA 59.336 33.333 5.72 0.00 38.94 1.94
1784 1960 7.165485 TCGAGATAACCAGATGGAAAAGAAAA 58.835 34.615 5.72 0.00 38.94 2.29
1785 1961 6.707290 TCGAGATAACCAGATGGAAAAGAAA 58.293 36.000 5.72 0.00 38.94 2.52
1797 1975 6.565234 ACTCTGTAACATTCGAGATAACCAG 58.435 40.000 0.00 0.00 0.00 4.00
1805 1983 6.745907 TCAATCGTAACTCTGTAACATTCGAG 59.254 38.462 0.00 0.00 0.00 4.04
1807 1985 6.020599 CCTCAATCGTAACTCTGTAACATTCG 60.021 42.308 0.00 0.00 0.00 3.34
1809 1987 6.106673 CCCTCAATCGTAACTCTGTAACATT 58.893 40.000 0.00 0.00 0.00 2.71
1819 1997 4.954202 TCTCACATACCCTCAATCGTAACT 59.046 41.667 0.00 0.00 0.00 2.24
1820 1998 5.258456 TCTCACATACCCTCAATCGTAAC 57.742 43.478 0.00 0.00 0.00 2.50
1821 1999 5.925506 TTCTCACATACCCTCAATCGTAA 57.074 39.130 0.00 0.00 0.00 3.18
1822 2000 5.833667 AGATTCTCACATACCCTCAATCGTA 59.166 40.000 0.00 0.00 0.00 3.43
1823 2001 4.651503 AGATTCTCACATACCCTCAATCGT 59.348 41.667 0.00 0.00 0.00 3.73
1826 2004 4.712476 GCAGATTCTCACATACCCTCAAT 58.288 43.478 0.00 0.00 0.00 2.57
1827 2005 3.430790 CGCAGATTCTCACATACCCTCAA 60.431 47.826 0.00 0.00 0.00 3.02
1830 2008 2.111384 ACGCAGATTCTCACATACCCT 58.889 47.619 0.00 0.00 0.00 4.34
1834 2012 4.391405 ACATCACGCAGATTCTCACATA 57.609 40.909 0.00 0.00 33.72 2.29
1840 2018 5.178061 TGATAACAACATCACGCAGATTCT 58.822 37.500 0.00 0.00 33.72 2.40
1849 2027 5.589855 TGGACATGGATGATAACAACATCAC 59.410 40.000 0.00 0.00 43.84 3.06
1874 2052 1.916506 TTCGCCCCAAAATCATGACA 58.083 45.000 0.00 0.00 0.00 3.58
1881 2060 1.185315 CTCACCATTCGCCCCAAAAT 58.815 50.000 0.00 0.00 0.00 1.82
1890 2069 3.618594 CACATACTGAACCTCACCATTCG 59.381 47.826 0.00 0.00 0.00 3.34
1895 2074 3.678056 TGACACATACTGAACCTCACC 57.322 47.619 0.00 0.00 0.00 4.02
1899 2078 5.431765 GAATCCATGACACATACTGAACCT 58.568 41.667 0.00 0.00 0.00 3.50
1914 2093 6.978674 TCTGTAGTACTAAGGGAATCCATG 57.021 41.667 3.61 0.00 34.83 3.66
1922 2101 5.002516 CGTAGGGATCTGTAGTACTAAGGG 58.997 50.000 3.61 0.00 0.00 3.95
1931 2110 5.520288 CACAAACATTCGTAGGGATCTGTAG 59.480 44.000 0.00 0.00 0.00 2.74
1944 2157 5.229052 ACGTTTTCATCAACACAAACATTCG 59.771 36.000 0.00 0.00 0.00 3.34
1953 2166 4.481930 TGATCCACGTTTTCATCAACAC 57.518 40.909 0.00 0.00 0.00 3.32
1956 2169 5.766150 AAGTTGATCCACGTTTTCATCAA 57.234 34.783 0.00 0.00 33.76 2.57
1973 2186 4.214971 AGCTTGACAGACTGCAATAAGTTG 59.785 41.667 1.25 0.00 38.39 3.16
1982 2203 0.516439 GCTGAAGCTTGACAGACTGC 59.484 55.000 17.04 7.78 38.21 4.40
2013 2234 4.755123 TCTCAGGCTGCTTTAAACTGTAAC 59.245 41.667 10.34 0.00 0.00 2.50
2018 2239 3.492102 TGTCTCAGGCTGCTTTAAACT 57.508 42.857 10.34 0.00 0.00 2.66
2021 2242 3.503363 CACATTGTCTCAGGCTGCTTTAA 59.497 43.478 10.34 3.16 0.00 1.52
2093 2349 9.317936 CATTCAGTAGCAAACTTGAGTGATATA 57.682 33.333 0.00 0.00 35.76 0.86
2113 2369 2.898729 ATACTCCACGGAGCATTCAG 57.101 50.000 13.16 0.00 45.54 3.02
2117 2373 2.434336 TGCTTAATACTCCACGGAGCAT 59.566 45.455 13.16 2.80 45.54 3.79
2118 2374 1.828595 TGCTTAATACTCCACGGAGCA 59.171 47.619 13.16 0.03 45.54 4.26
2119 2375 2.596904 TGCTTAATACTCCACGGAGC 57.403 50.000 13.16 0.00 45.54 4.70
2120 2376 6.436843 AAAAATGCTTAATACTCCACGGAG 57.563 37.500 11.67 11.67 46.91 4.63
2121 2377 8.514330 AATAAAAATGCTTAATACTCCACGGA 57.486 30.769 0.00 0.00 0.00 4.69
2122 2378 8.621286 AGAATAAAAATGCTTAATACTCCACGG 58.379 33.333 0.00 0.00 0.00 4.94
2123 2379 9.438291 CAGAATAAAAATGCTTAATACTCCACG 57.562 33.333 0.00 0.00 0.00 4.94
2191 2450 7.560991 TCAGTCAATATACATGCTTTCCCATTT 59.439 33.333 0.00 0.00 0.00 2.32
2245 2504 2.614520 TCGGAGAGACTCTAATTGCGAG 59.385 50.000 4.57 5.37 34.70 5.03
2281 2540 5.452255 ACATAATGGGATTCATTCTGCAGT 58.548 37.500 14.67 0.00 44.32 4.40
2311 2570 6.959639 AGGAAGCAAACACAATTCTAGAAA 57.040 33.333 9.71 0.00 0.00 2.52
2317 2576 4.202151 ACAGGAAGGAAGCAAACACAATTC 60.202 41.667 0.00 0.00 0.00 2.17
2336 2595 5.479716 AAGAAAAACAGTGTTACGACAGG 57.520 39.130 9.37 0.00 36.20 4.00
2339 2598 8.443898 AAAAGAAAGAAAAACAGTGTTACGAC 57.556 30.769 9.37 1.98 0.00 4.34
2340 2599 8.508875 AGAAAAGAAAGAAAAACAGTGTTACGA 58.491 29.630 9.37 0.00 0.00 3.43
2341 2600 8.575454 CAGAAAAGAAAGAAAAACAGTGTTACG 58.425 33.333 9.37 0.00 0.00 3.18
2342 2601 9.620660 TCAGAAAAGAAAGAAAAACAGTGTTAC 57.379 29.630 9.37 4.45 0.00 2.50
2344 2603 8.978539 GTTCAGAAAAGAAAGAAAAACAGTGTT 58.021 29.630 1.64 1.64 0.00 3.32
2345 2604 8.360390 AGTTCAGAAAAGAAAGAAAAACAGTGT 58.640 29.630 0.00 0.00 0.00 3.55
2346 2605 8.748380 AGTTCAGAAAAGAAAGAAAAACAGTG 57.252 30.769 0.00 0.00 0.00 3.66
2359 2618 9.823647 GATCAGATACCATAAGTTCAGAAAAGA 57.176 33.333 0.00 0.00 0.00 2.52
2360 2619 9.050601 GGATCAGATACCATAAGTTCAGAAAAG 57.949 37.037 0.00 0.00 0.00 2.27
2361 2620 8.772250 AGGATCAGATACCATAAGTTCAGAAAA 58.228 33.333 0.00 0.00 0.00 2.29
2366 2625 7.955750 TCCATAGGATCAGATACCATAAGTTCA 59.044 37.037 0.00 0.00 0.00 3.18
2373 2632 4.469227 GCAGTCCATAGGATCAGATACCAT 59.531 45.833 0.00 0.00 32.73 3.55
2408 2685 6.607600 TCTCGCCTAGTTATCCTATGCATAAT 59.392 38.462 8.00 2.03 37.19 1.28
2436 2715 5.739752 TCTGGAATGATGATTTTAGCACG 57.260 39.130 0.00 0.00 0.00 5.34
2437 2716 9.837525 GATATTCTGGAATGATGATTTTAGCAC 57.162 33.333 6.13 0.00 32.50 4.40
2447 2726 8.242053 GCAACATAAGGATATTCTGGAATGATG 58.758 37.037 6.13 7.35 32.50 3.07
2475 2754 6.070653 AGGAACCATGTGATAAAATGCATTGT 60.071 34.615 13.82 10.46 0.00 2.71
2495 2774 3.858247 ACCGCTCAAGTTATGTAGGAAC 58.142 45.455 0.00 0.00 0.00 3.62
2497 2776 3.259876 ACAACCGCTCAAGTTATGTAGGA 59.740 43.478 0.00 0.00 0.00 2.94
2506 2785 4.638865 GGGATAATAAACAACCGCTCAAGT 59.361 41.667 0.00 0.00 0.00 3.16
2507 2786 4.638421 TGGGATAATAAACAACCGCTCAAG 59.362 41.667 0.00 0.00 0.00 3.02
2508 2787 4.590918 TGGGATAATAAACAACCGCTCAA 58.409 39.130 0.00 0.00 0.00 3.02
2509 2788 4.223556 TGGGATAATAAACAACCGCTCA 57.776 40.909 0.00 0.00 0.00 4.26
2623 2902 0.879400 CATGAGGCATCGTCAGCTCC 60.879 60.000 0.00 0.00 31.81 4.70
2634 2913 2.716823 AGTGAGACACAGCATGAGGCA 61.717 52.381 0.00 0.00 37.07 4.75
2637 2916 2.608268 CAGAGTGAGACACAGCATGAG 58.392 52.381 0.00 0.00 39.69 2.90
2640 2919 0.389556 CGCAGAGTGAGACACAGCAT 60.390 55.000 4.75 0.00 36.74 3.79
2644 2923 0.744281 TGTTCGCAGAGTGAGACACA 59.256 50.000 4.75 0.00 38.43 3.72
2646 2925 0.744281 TGTGTTCGCAGAGTGAGACA 59.256 50.000 0.00 0.00 38.43 3.41
2647 2926 1.413382 CTGTGTTCGCAGAGTGAGAC 58.587 55.000 7.50 0.00 38.43 3.36
2648 2927 3.873805 CTGTGTTCGCAGAGTGAGA 57.126 52.632 7.50 0.00 38.43 3.27
2654 2966 1.305201 GGGAAAACTGTGTTCGCAGA 58.695 50.000 19.45 0.00 39.62 4.26
2661 2973 1.663695 CTGTGACGGGAAAACTGTGT 58.336 50.000 0.00 0.00 39.29 3.72
2815 3127 0.108615 CAAGGCCTTCGACGTCAGAT 60.109 55.000 17.29 0.00 0.00 2.90
2822 3134 1.087501 GATGGTTCAAGGCCTTCGAC 58.912 55.000 17.29 16.58 0.00 4.20
2858 3170 1.817941 GGCGCGTGATATGGTTGGT 60.818 57.895 8.43 0.00 0.00 3.67
2905 3217 2.868839 GCTTACAGTTACAGGCCACGAA 60.869 50.000 5.01 0.00 0.00 3.85
2959 3271 3.663176 CCGGTTGTGCCACTGCTG 61.663 66.667 0.00 0.00 38.71 4.41
2986 3298 1.335496 GAGGCAGAGCTACTACCTTCG 59.665 57.143 6.45 0.00 42.03 3.79
3034 3346 2.849294 AGAGAAACTTCCTGACTGGC 57.151 50.000 0.00 0.00 35.26 4.85
3060 3372 3.917380 GCTCAGCTGTGTATATTCGCTAG 59.083 47.826 14.67 0.00 0.00 3.42
3114 3427 5.607477 TCATCTAACATAACATTCCCGGAC 58.393 41.667 0.73 0.00 0.00 4.79
3117 3430 7.210174 TCTTCTCATCTAACATAACATTCCCG 58.790 38.462 0.00 0.00 0.00 5.14
3151 3464 5.912149 AGGTGCTATTCTGATTCCCATTA 57.088 39.130 0.00 0.00 0.00 1.90
3182 3495 4.320608 ACATAAGTTGCAACACAAAGGG 57.679 40.909 30.11 14.84 40.82 3.95
3215 3528 5.958955 TCTAGATCAGTTCATATGCATCCG 58.041 41.667 0.19 0.00 0.00 4.18
3216 3529 7.222417 CGATTCTAGATCAGTTCATATGCATCC 59.778 40.741 0.19 0.00 0.00 3.51
3217 3530 7.972832 TCGATTCTAGATCAGTTCATATGCATC 59.027 37.037 0.19 0.00 0.00 3.91
3220 3533 9.964303 ATATCGATTCTAGATCAGTTCATATGC 57.036 33.333 1.71 0.00 0.00 3.14
3239 3552 5.009010 CCCTAGTTTTGCTTTGCATATCGAT 59.991 40.000 2.16 2.16 38.76 3.59
3241 3554 4.601019 CCCTAGTTTTGCTTTGCATATCG 58.399 43.478 0.00 0.00 38.76 2.92
3278 3593 4.342378 TCAGTATGCAATCTCCTACCAGAC 59.658 45.833 0.00 0.00 34.76 3.51
3280 3595 4.944619 TCAGTATGCAATCTCCTACCAG 57.055 45.455 0.00 0.00 34.76 4.00
3314 3630 2.060980 CCCCTTCAGAGGAGACCGG 61.061 68.421 0.00 0.00 46.74 5.28
3319 3635 0.547712 TGGTTCCCCCTTCAGAGGAG 60.548 60.000 0.00 0.00 46.74 3.69
3320 3636 0.547712 CTGGTTCCCCCTTCAGAGGA 60.548 60.000 0.00 0.00 46.74 3.71
3321 3637 0.547712 TCTGGTTCCCCCTTCAGAGG 60.548 60.000 0.00 0.00 43.15 3.69
3322 3638 1.280421 CTTCTGGTTCCCCCTTCAGAG 59.720 57.143 0.00 0.00 37.52 3.35
3323 3639 1.132527 TCTTCTGGTTCCCCCTTCAGA 60.133 52.381 0.00 0.00 34.84 3.27
3324 3640 1.280421 CTCTTCTGGTTCCCCCTTCAG 59.720 57.143 0.00 0.00 0.00 3.02
3325 3641 1.362224 CTCTTCTGGTTCCCCCTTCA 58.638 55.000 0.00 0.00 0.00 3.02
3326 3642 0.621082 CCTCTTCTGGTTCCCCCTTC 59.379 60.000 0.00 0.00 0.00 3.46
3327 3643 0.196118 TCCTCTTCTGGTTCCCCCTT 59.804 55.000 0.00 0.00 0.00 3.95
3328 3644 0.196118 TTCCTCTTCTGGTTCCCCCT 59.804 55.000 0.00 0.00 0.00 4.79
3329 3645 0.328592 GTTCCTCTTCTGGTTCCCCC 59.671 60.000 0.00 0.00 0.00 5.40
3330 3646 1.003696 CAGTTCCTCTTCTGGTTCCCC 59.996 57.143 0.00 0.00 0.00 4.81
3331 3647 1.978580 TCAGTTCCTCTTCTGGTTCCC 59.021 52.381 0.00 0.00 33.13 3.97
3332 3648 3.325135 TCTTCAGTTCCTCTTCTGGTTCC 59.675 47.826 0.00 0.00 33.13 3.62
3333 3649 4.562552 CCTCTTCAGTTCCTCTTCTGGTTC 60.563 50.000 0.00 0.00 33.13 3.62
3343 3659 3.515602 ACAATTGCCTCTTCAGTTCCT 57.484 42.857 5.05 0.00 0.00 3.36
3357 3673 1.207089 TCAGGGAGTCGCCTACAATTG 59.793 52.381 3.24 3.24 36.66 2.32
3363 3679 2.050350 CCGTTCAGGGAGTCGCCTA 61.050 63.158 3.13 0.00 36.66 3.93
3379 3695 1.810030 GAAACCCTCTACGCAGCCG 60.810 63.158 0.00 0.00 41.14 5.52
3382 3708 1.726853 CAAGGAAACCCTCTACGCAG 58.273 55.000 0.00 0.00 32.44 5.18
3406 3737 1.281419 TAACGAAGGAGATTGGCCCA 58.719 50.000 0.00 0.00 0.00 5.36
3418 3749 2.540101 GACGGATGGAAGCATAACGAAG 59.460 50.000 0.00 0.00 0.00 3.79
3420 3751 1.478916 TGACGGATGGAAGCATAACGA 59.521 47.619 0.00 0.00 0.00 3.85
3421 3752 1.934589 TGACGGATGGAAGCATAACG 58.065 50.000 0.00 0.00 0.00 3.18
3422 3753 4.452455 CCTATTGACGGATGGAAGCATAAC 59.548 45.833 0.00 0.00 0.00 1.89
3423 3754 4.641396 CCTATTGACGGATGGAAGCATAA 58.359 43.478 0.00 0.00 0.00 1.90
3424 3755 3.557054 GCCTATTGACGGATGGAAGCATA 60.557 47.826 0.00 0.00 0.00 3.14
3425 3756 2.811873 GCCTATTGACGGATGGAAGCAT 60.812 50.000 0.00 0.00 0.00 3.79
3428 3759 1.873903 CGGCCTATTGACGGATGGAAG 60.874 57.143 0.00 0.00 0.00 3.46
3429 3760 0.105964 CGGCCTATTGACGGATGGAA 59.894 55.000 0.00 0.00 0.00 3.53
3430 3761 1.046472 ACGGCCTATTGACGGATGGA 61.046 55.000 0.00 0.00 0.00 3.41
3431 3762 0.600255 GACGGCCTATTGACGGATGG 60.600 60.000 0.00 0.00 0.00 3.51
3432 3763 0.389391 AGACGGCCTATTGACGGATG 59.611 55.000 0.00 0.00 0.00 3.51
3433 3764 1.068741 GAAGACGGCCTATTGACGGAT 59.931 52.381 0.00 0.00 0.00 4.18
3434 3765 0.458669 GAAGACGGCCTATTGACGGA 59.541 55.000 0.00 0.00 0.00 4.69
3436 3767 0.099968 TCGAAGACGGCCTATTGACG 59.900 55.000 0.00 0.00 40.21 4.35
3527 3858 3.980646 TCCAAAATGACACCGAAACAG 57.019 42.857 0.00 0.00 0.00 3.16
3590 3921 4.290155 CGCATTGCTTTTCAGTAAACAGT 58.710 39.130 7.12 0.00 0.00 3.55
3609 3941 1.250154 CCAAGAATTTGAGGGGCGCA 61.250 55.000 10.83 0.00 36.36 6.09
3624 3956 5.704515 ACATTCAGTCACATTCTTCTCCAAG 59.295 40.000 0.00 0.00 0.00 3.61
3655 3987 4.500116 GGGAGCTCTCACGGCGTC 62.500 72.222 10.85 0.00 34.52 5.19
3660 3992 2.898729 AACATATGGGAGCTCTCACG 57.101 50.000 21.07 13.16 35.27 4.35
3725 4057 4.537135 TGGTTGTGTTGGTTTTTAGCAA 57.463 36.364 0.00 0.00 0.00 3.91
3726 4058 4.537135 TTGGTTGTGTTGGTTTTTAGCA 57.463 36.364 0.00 0.00 0.00 3.49
3727 4059 6.254480 CAATTTGGTTGTGTTGGTTTTTAGC 58.746 36.000 0.00 0.00 33.01 3.09
3728 4060 6.093357 AGCAATTTGGTTGTGTTGGTTTTTAG 59.907 34.615 0.00 0.00 40.07 1.85
3729 4061 5.940470 AGCAATTTGGTTGTGTTGGTTTTTA 59.060 32.000 0.00 0.00 40.07 1.52
3730 4062 4.764308 AGCAATTTGGTTGTGTTGGTTTTT 59.236 33.333 0.00 0.00 40.07 1.94
3731 4063 4.331108 AGCAATTTGGTTGTGTTGGTTTT 58.669 34.783 0.00 0.00 40.07 2.43
3732 4064 3.949132 AGCAATTTGGTTGTGTTGGTTT 58.051 36.364 0.00 0.00 40.07 3.27
3733 4065 3.625649 AGCAATTTGGTTGTGTTGGTT 57.374 38.095 0.00 0.00 40.07 3.67
3734 4066 4.744795 TTAGCAATTTGGTTGTGTTGGT 57.255 36.364 6.39 0.00 40.07 3.67
3735 4067 6.254480 GTTTTTAGCAATTTGGTTGTGTTGG 58.746 36.000 6.39 0.00 40.07 3.77
3736 4068 6.128172 TGGTTTTTAGCAATTTGGTTGTGTTG 60.128 34.615 6.39 0.00 40.07 3.33
3737 4069 5.940470 TGGTTTTTAGCAATTTGGTTGTGTT 59.060 32.000 6.39 0.00 40.07 3.32
3738 4070 5.491982 TGGTTTTTAGCAATTTGGTTGTGT 58.508 33.333 6.39 0.00 40.07 3.72
3739 4071 6.128172 TGTTGGTTTTTAGCAATTTGGTTGTG 60.128 34.615 6.39 0.00 40.07 3.33
3740 4072 5.940470 TGTTGGTTTTTAGCAATTTGGTTGT 59.060 32.000 6.39 0.00 40.07 3.32
3741 4073 6.128172 TGTGTTGGTTTTTAGCAATTTGGTTG 60.128 34.615 6.39 0.00 40.90 3.77
3742 4074 5.940470 TGTGTTGGTTTTTAGCAATTTGGTT 59.060 32.000 6.39 0.00 0.00 3.67
3743 4075 5.491982 TGTGTTGGTTTTTAGCAATTTGGT 58.508 33.333 6.33 6.33 0.00 3.67
3744 4076 6.428385 TTGTGTTGGTTTTTAGCAATTTGG 57.572 33.333 0.00 0.00 0.00 3.28
3745 4077 7.044183 GCAATTGTGTTGGTTTTTAGCAATTTG 60.044 33.333 7.40 0.00 34.23 2.32
3746 4078 6.971756 GCAATTGTGTTGGTTTTTAGCAATTT 59.028 30.769 7.40 0.00 34.23 1.82
3747 4079 6.493978 GCAATTGTGTTGGTTTTTAGCAATT 58.506 32.000 7.40 0.00 36.06 2.32
3748 4080 5.277250 CGCAATTGTGTTGGTTTTTAGCAAT 60.277 36.000 10.93 0.00 0.00 3.56
3753 4085 3.791887 CGACGCAATTGTGTTGGTTTTTA 59.208 39.130 25.63 0.00 39.12 1.52
3755 4087 2.159366 TCGACGCAATTGTGTTGGTTTT 60.159 40.909 30.13 7.51 39.70 2.43
3762 4094 2.058798 CACTACTCGACGCAATTGTGT 58.941 47.619 24.04 24.04 42.13 3.72
3779 4111 0.756442 TCTGCAGGCCTTTTTGCACT 60.756 50.000 15.13 0.00 44.72 4.40
3789 4121 4.322080 AACTTTTAGTTTTCTGCAGGCC 57.678 40.909 15.13 0.00 34.11 5.19
3790 4122 4.025730 GCAAACTTTTAGTTTTCTGCAGGC 60.026 41.667 15.13 0.00 45.38 4.85
3794 4126 7.007367 GCTTTTTGCAAACTTTTAGTTTTCTGC 59.993 33.333 12.39 5.22 45.38 4.26
3801 4134 4.264380 CGACGCTTTTTGCAAACTTTTAGT 59.736 37.500 12.39 7.57 43.06 2.24
3852 4185 6.177310 TGGCTCTTAACCAAGTGTTTAGTA 57.823 37.500 0.00 0.00 38.42 1.82
3855 4188 6.547880 TCAAATGGCTCTTAACCAAGTGTTTA 59.452 34.615 0.00 0.00 41.49 2.01
3860 4193 5.079643 ACATCAAATGGCTCTTAACCAAGT 58.920 37.500 0.00 0.00 41.49 3.16
3877 4210 6.358974 TCCACTAGTCAGATTCAACATCAA 57.641 37.500 0.00 0.00 0.00 2.57
3879 4212 6.481644 GGAATCCACTAGTCAGATTCAACATC 59.518 42.308 29.27 17.23 44.98 3.06
3885 4230 4.657436 ACGGAATCCACTAGTCAGATTC 57.343 45.455 24.63 24.63 43.30 2.52
3893 4238 3.198068 CCATGACAACGGAATCCACTAG 58.802 50.000 0.00 0.00 0.00 2.57
3900 4245 3.955145 TCAGCCATGACAACGGAAT 57.045 47.368 0.00 0.00 0.00 3.01
3912 4257 0.685785 TTTTGGTGCCAAGTCAGCCA 60.686 50.000 3.72 0.00 37.24 4.75
3921 4266 1.144708 TGGTGAGAGATTTTGGTGCCA 59.855 47.619 0.00 0.00 0.00 4.92
3965 4310 8.117813 AGATAATTTTCCACCGCTTAGAAAAA 57.882 30.769 0.00 0.00 41.39 1.94
3966 4311 7.696992 AGATAATTTTCCACCGCTTAGAAAA 57.303 32.000 0.00 0.00 42.04 2.29
3967 4312 7.392113 TCAAGATAATTTTCCACCGCTTAGAAA 59.608 33.333 0.00 0.00 0.00 2.52
3968 4313 6.882140 TCAAGATAATTTTCCACCGCTTAGAA 59.118 34.615 0.00 0.00 0.00 2.10
3969 4314 6.411376 TCAAGATAATTTTCCACCGCTTAGA 58.589 36.000 0.00 0.00 0.00 2.10
3970 4315 6.677781 TCAAGATAATTTTCCACCGCTTAG 57.322 37.500 0.00 0.00 0.00 2.18
3971 4316 6.826231 TCATCAAGATAATTTTCCACCGCTTA 59.174 34.615 0.00 0.00 0.00 3.09
3972 4317 5.652014 TCATCAAGATAATTTTCCACCGCTT 59.348 36.000 0.00 0.00 0.00 4.68
3973 4318 5.192927 TCATCAAGATAATTTTCCACCGCT 58.807 37.500 0.00 0.00 0.00 5.52
3974 4319 5.499139 TCATCAAGATAATTTTCCACCGC 57.501 39.130 0.00 0.00 0.00 5.68
3975 4320 6.460123 CCCTTCATCAAGATAATTTTCCACCG 60.460 42.308 0.00 0.00 0.00 4.94
3976 4321 6.683861 GCCCTTCATCAAGATAATTTTCCACC 60.684 42.308 0.00 0.00 0.00 4.61
3977 4322 6.276091 GCCCTTCATCAAGATAATTTTCCAC 58.724 40.000 0.00 0.00 0.00 4.02
3978 4323 5.363580 GGCCCTTCATCAAGATAATTTTCCA 59.636 40.000 0.00 0.00 0.00 3.53
3979 4324 5.221521 GGGCCCTTCATCAAGATAATTTTCC 60.222 44.000 17.04 0.00 0.00 3.13
3980 4325 5.363580 TGGGCCCTTCATCAAGATAATTTTC 59.636 40.000 25.70 0.00 0.00 2.29
3981 4326 5.129320 GTGGGCCCTTCATCAAGATAATTTT 59.871 40.000 25.70 0.00 0.00 1.82
3982 4327 4.651045 GTGGGCCCTTCATCAAGATAATTT 59.349 41.667 25.70 0.00 0.00 1.82
3983 4328 4.218312 GTGGGCCCTTCATCAAGATAATT 58.782 43.478 25.70 0.00 0.00 1.40
3984 4329 3.437052 GGTGGGCCCTTCATCAAGATAAT 60.437 47.826 25.70 0.00 0.00 1.28
3985 4330 2.091885 GGTGGGCCCTTCATCAAGATAA 60.092 50.000 25.70 0.00 0.00 1.75
3986 4331 1.494721 GGTGGGCCCTTCATCAAGATA 59.505 52.381 25.70 0.00 0.00 1.98
3987 4332 0.259938 GGTGGGCCCTTCATCAAGAT 59.740 55.000 25.70 0.00 0.00 2.40
3988 4333 0.846427 AGGTGGGCCCTTCATCAAGA 60.846 55.000 25.70 0.00 42.73 3.02
3989 4334 0.682209 CAGGTGGGCCCTTCATCAAG 60.682 60.000 25.70 0.56 42.73 3.02
3990 4335 1.383799 CAGGTGGGCCCTTCATCAA 59.616 57.895 25.70 0.00 42.73 2.57
3991 4336 1.852157 ACAGGTGGGCCCTTCATCA 60.852 57.895 25.70 0.00 42.73 3.07
3992 4337 1.077429 GACAGGTGGGCCCTTCATC 60.077 63.158 25.70 10.56 42.73 2.92
3993 4338 1.852157 TGACAGGTGGGCCCTTCAT 60.852 57.895 25.70 11.30 42.73 2.57
3994 4339 2.449518 TGACAGGTGGGCCCTTCA 60.450 61.111 25.70 14.32 42.73 3.02
3995 4340 2.034221 GTGACAGGTGGGCCCTTC 59.966 66.667 25.70 16.05 42.73 3.46
3996 4341 2.450502 AGTGACAGGTGGGCCCTT 60.451 61.111 25.70 5.67 42.73 3.95
3998 4343 2.930562 AGAGTGACAGGTGGGCCC 60.931 66.667 17.59 17.59 34.57 5.80
3999 4344 1.893919 GAGAGAGTGACAGGTGGGCC 61.894 65.000 0.00 0.00 0.00 5.80
4000 4345 1.188219 TGAGAGAGTGACAGGTGGGC 61.188 60.000 0.00 0.00 0.00 5.36
4001 4346 3.057749 TGAGAGAGTGACAGGTGGG 57.942 57.895 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.