Multiple sequence alignment - TraesCS2D01G078900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G078900 chr2D 100.000 3016 0 0 1 3016 33876361 33873346 0.000000e+00 5570.0
1 TraesCS2D01G078900 chr2D 83.774 1097 109 40 950 2009 33726846 33727910 0.000000e+00 976.0
2 TraesCS2D01G078900 chr2D 82.069 725 102 18 1280 2001 647814673 647813974 7.200000e-166 593.0
3 TraesCS2D01G078900 chr2D 88.472 373 36 3 1259 1630 33850180 33849814 7.670000e-121 444.0
4 TraesCS2D01G078900 chr2D 89.235 353 37 1 1668 2020 33855511 33855160 9.920000e-120 440.0
5 TraesCS2D01G078900 chr2B 87.399 1603 107 52 655 2190 55887236 55888810 0.000000e+00 1753.0
6 TraesCS2D01G078900 chr2B 85.696 762 86 11 1256 2017 55891631 55892369 0.000000e+00 782.0
7 TraesCS2D01G078900 chr2B 81.800 500 42 14 2544 3016 55889815 55890292 1.020000e-99 374.0
8 TraesCS2D01G078900 chr2B 93.443 122 7 1 2383 2503 55889690 55889811 2.390000e-41 180.0
9 TraesCS2D01G078900 chr2B 80.405 148 15 5 2221 2359 55888812 55888954 1.910000e-17 100.0
10 TraesCS2D01G078900 chr2B 90.909 55 5 0 2847 2901 685281153 685281207 1.160000e-09 75.0
11 TraesCS2D01G078900 chr2A 92.066 1084 60 14 1208 2273 36719097 36718022 0.000000e+00 1502.0
12 TraesCS2D01G078900 chr2A 93.420 1003 42 9 1210 2190 36657641 36658641 0.000000e+00 1465.0
13 TraesCS2D01G078900 chr2A 90.211 807 28 12 2256 3016 36717130 36716329 0.000000e+00 1005.0
14 TraesCS2D01G078900 chr2A 88.073 654 50 13 2383 3016 36659521 36660166 0.000000e+00 750.0
15 TraesCS2D01G078900 chr2A 82.992 782 100 20 1256 2008 57975585 57976362 0.000000e+00 676.0
16 TraesCS2D01G078900 chr2A 90.722 388 25 8 762 1146 36719473 36719094 9.650000e-140 507.0
17 TraesCS2D01G078900 chr2A 88.385 353 41 0 1668 2020 36706265 36705913 2.780000e-115 425.0
18 TraesCS2D01G078900 chr2A 87.500 384 22 16 852 1213 36652116 36652495 1.290000e-113 420.0
19 TraesCS2D01G078900 chr2A 87.500 320 38 2 1284 1602 772663514 772663832 4.750000e-98 368.0
20 TraesCS2D01G078900 chr2A 87.952 166 14 5 700 860 36636753 36636917 1.100000e-44 191.0
21 TraesCS2D01G078900 chr2A 95.349 86 3 1 700 784 36724270 36724185 5.240000e-28 135.0
22 TraesCS2D01G078900 chr2A 95.122 82 3 1 604 685 36724337 36724257 8.780000e-26 128.0
23 TraesCS2D01G078900 chr2A 86.325 117 6 7 776 887 36719585 36719474 5.280000e-23 119.0
24 TraesCS2D01G078900 chrUn 88.705 363 34 3 1269 1630 12882685 12882329 1.280000e-118 436.0
25 TraesCS2D01G078900 chrUn 88.385 353 41 0 1668 2020 12891430 12891782 2.780000e-115 425.0
26 TraesCS2D01G078900 chr4D 88.716 257 22 7 287 539 407814689 407814942 1.050000e-79 307.0
27 TraesCS2D01G078900 chr3D 93.878 49 3 0 2853 2901 50014056 50014008 1.160000e-09 75.0
28 TraesCS2D01G078900 chr3B 75.543 184 28 14 114 289 761001596 761001770 1.160000e-09 75.0
29 TraesCS2D01G078900 chr7B 74.658 146 29 6 2758 2899 689628095 689628236 1.170000e-04 58.4
30 TraesCS2D01G078900 chr7A 100.000 31 0 0 31 61 57225701 57225671 1.170000e-04 58.4
31 TraesCS2D01G078900 chr3A 96.875 32 1 0 30 61 739748959 739748990 2.000000e-03 54.7
32 TraesCS2D01G078900 chr6B 100.000 28 0 0 875 902 188503763 188503736 5.000000e-03 52.8
33 TraesCS2D01G078900 chr1B 90.244 41 3 1 2847 2887 372226942 372226981 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G078900 chr2D 33873346 33876361 3015 True 5570.00 5570 100.0000 1 3016 1 chr2D.!!$R3 3015
1 TraesCS2D01G078900 chr2D 33726846 33727910 1064 False 976.00 976 83.7740 950 2009 1 chr2D.!!$F1 1059
2 TraesCS2D01G078900 chr2D 647813974 647814673 699 True 593.00 593 82.0690 1280 2001 1 chr2D.!!$R4 721
3 TraesCS2D01G078900 chr2B 55887236 55892369 5133 False 637.80 1753 85.7486 655 3016 5 chr2B.!!$F2 2361
4 TraesCS2D01G078900 chr2A 36657641 36660166 2525 False 1107.50 1465 90.7465 1210 3016 2 chr2A.!!$F5 1806
5 TraesCS2D01G078900 chr2A 36716329 36719585 3256 True 783.25 1502 89.8310 762 3016 4 chr2A.!!$R2 2254
6 TraesCS2D01G078900 chr2A 57975585 57976362 777 False 676.00 676 82.9920 1256 2008 1 chr2A.!!$F3 752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
468 469 0.035739 GAAGGTTCCCACAACCGCTA 59.964 55.0 0.00 0.0 44.82 4.26 F
548 549 0.107848 CGGGCCATCCTCGTTAGTTT 60.108 55.0 4.39 0.0 0.00 2.66 F
578 579 0.393808 TGCGGCAAGTAGGGATTTCC 60.394 55.0 0.00 0.0 0.00 3.13 F
652 653 0.400213 AGGCCATGAAGAACAACGGA 59.600 50.0 5.01 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1611 1817 0.100682 GTGTGTGCGCTAGCTAGCTA 59.899 55.000 36.02 24.83 46.85 3.32 R
1613 1819 0.737715 AAGTGTGTGCGCTAGCTAGC 60.738 55.000 31.88 31.88 45.42 3.42 R
2011 2271 0.810031 CCACGGACGGATCAATCACC 60.810 60.000 0.00 0.00 0.00 4.02 R
2042 2302 3.547601 GCACAACTAATTAACGTGCGTT 58.452 40.909 14.41 14.41 42.97 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.730705 TCAGATCTATCATCAAAGTTCAAAACT 57.269 29.630 0.00 0.00 45.46 2.66
27 28 9.985318 CAGATCTATCATCAAAGTTCAAAACTC 57.015 33.333 0.00 0.00 41.91 3.01
28 29 9.956640 AGATCTATCATCAAAGTTCAAAACTCT 57.043 29.630 0.00 0.00 41.91 3.24
30 31 8.553459 TCTATCATCAAAGTTCAAAACTCTCC 57.447 34.615 0.00 0.00 41.91 3.71
31 32 8.156820 TCTATCATCAAAGTTCAAAACTCTCCA 58.843 33.333 0.00 0.00 41.91 3.86
32 33 7.587037 ATCATCAAAGTTCAAAACTCTCCAA 57.413 32.000 0.00 0.00 41.91 3.53
33 34 7.403312 TCATCAAAGTTCAAAACTCTCCAAA 57.597 32.000 0.00 0.00 41.91 3.28
34 35 7.257722 TCATCAAAGTTCAAAACTCTCCAAAC 58.742 34.615 0.00 0.00 41.91 2.93
35 36 6.582677 TCAAAGTTCAAAACTCTCCAAACA 57.417 33.333 0.00 0.00 41.91 2.83
36 37 7.169158 TCAAAGTTCAAAACTCTCCAAACAT 57.831 32.000 0.00 0.00 41.91 2.71
37 38 8.287439 TCAAAGTTCAAAACTCTCCAAACATA 57.713 30.769 0.00 0.00 41.91 2.29
38 39 8.744652 TCAAAGTTCAAAACTCTCCAAACATAA 58.255 29.630 0.00 0.00 41.91 1.90
39 40 9.533253 CAAAGTTCAAAACTCTCCAAACATAAT 57.467 29.630 0.00 0.00 41.91 1.28
40 41 9.533253 AAAGTTCAAAACTCTCCAAACATAATG 57.467 29.630 0.00 0.00 41.91 1.90
41 42 8.463930 AGTTCAAAACTCTCCAAACATAATGA 57.536 30.769 0.00 0.00 37.02 2.57
42 43 8.912988 AGTTCAAAACTCTCCAAACATAATGAA 58.087 29.630 0.00 0.00 37.02 2.57
43 44 9.528018 GTTCAAAACTCTCCAAACATAATGAAA 57.472 29.630 0.00 0.00 0.00 2.69
62 63 7.636150 ATGAAAATTACATCAAGGTCTCTGG 57.364 36.000 0.00 0.00 0.00 3.86
63 64 6.778821 TGAAAATTACATCAAGGTCTCTGGA 58.221 36.000 0.00 0.00 0.00 3.86
64 65 6.881065 TGAAAATTACATCAAGGTCTCTGGAG 59.119 38.462 0.00 0.00 0.00 3.86
65 66 3.895232 TTACATCAAGGTCTCTGGAGC 57.105 47.619 0.00 0.00 39.97 4.70
66 67 1.649321 ACATCAAGGTCTCTGGAGCA 58.351 50.000 0.00 0.00 41.89 4.26
67 68 1.277557 ACATCAAGGTCTCTGGAGCAC 59.722 52.381 0.00 0.00 41.89 4.40
68 69 0.908198 ATCAAGGTCTCTGGAGCACC 59.092 55.000 0.00 0.00 41.89 5.01
69 70 0.471780 TCAAGGTCTCTGGAGCACCA 60.472 55.000 1.91 1.91 44.76 4.17
70 71 0.397941 CAAGGTCTCTGGAGCACCAA 59.602 55.000 3.90 0.00 46.32 3.67
71 72 0.689623 AAGGTCTCTGGAGCACCAAG 59.310 55.000 3.90 5.31 46.32 3.61
72 73 1.376553 GGTCTCTGGAGCACCAAGC 60.377 63.158 3.90 0.00 46.32 4.01
82 83 3.683581 GCACCAAGCGATCTTTGTC 57.316 52.632 0.00 0.00 0.00 3.18
83 84 0.179215 GCACCAAGCGATCTTTGTCG 60.179 55.000 0.00 0.00 44.14 4.35
89 90 4.277239 CGATCTTTGTCGCCACCA 57.723 55.556 0.00 0.00 34.56 4.17
90 91 2.081526 CGATCTTTGTCGCCACCAG 58.918 57.895 0.00 0.00 34.56 4.00
91 92 0.389817 CGATCTTTGTCGCCACCAGA 60.390 55.000 0.00 0.00 34.56 3.86
92 93 1.808411 GATCTTTGTCGCCACCAGAA 58.192 50.000 0.00 0.00 0.00 3.02
93 94 1.464997 GATCTTTGTCGCCACCAGAAC 59.535 52.381 0.00 0.00 0.00 3.01
94 95 0.878523 TCTTTGTCGCCACCAGAACG 60.879 55.000 0.00 0.00 0.00 3.95
95 96 0.878523 CTTTGTCGCCACCAGAACGA 60.879 55.000 0.00 0.00 0.00 3.85
96 97 0.878523 TTTGTCGCCACCAGAACGAG 60.879 55.000 0.00 0.00 36.34 4.18
97 98 2.023414 TTGTCGCCACCAGAACGAGT 62.023 55.000 0.00 0.00 36.34 4.18
98 99 1.733399 GTCGCCACCAGAACGAGTC 60.733 63.158 0.00 0.00 36.34 3.36
99 100 2.805353 CGCCACCAGAACGAGTCG 60.805 66.667 11.85 11.85 0.00 4.18
100 101 3.112709 GCCACCAGAACGAGTCGC 61.113 66.667 13.59 0.00 0.00 5.19
101 102 2.651361 CCACCAGAACGAGTCGCT 59.349 61.111 13.59 0.00 0.00 4.93
102 103 1.734477 CCACCAGAACGAGTCGCTG 60.734 63.158 13.59 12.52 0.00 5.18
103 104 1.285950 CACCAGAACGAGTCGCTGA 59.714 57.895 18.27 0.00 0.00 4.26
104 105 1.004277 CACCAGAACGAGTCGCTGAC 61.004 60.000 18.27 6.31 0.00 3.51
105 106 1.444553 CCAGAACGAGTCGCTGACC 60.445 63.158 18.27 2.71 32.18 4.02
106 107 1.581954 CAGAACGAGTCGCTGACCT 59.418 57.895 13.59 0.00 32.18 3.85
107 108 0.730834 CAGAACGAGTCGCTGACCTG 60.731 60.000 13.59 8.87 32.18 4.00
108 109 2.049063 AACGAGTCGCTGACCTGC 60.049 61.111 13.59 0.00 32.18 4.85
109 110 3.575351 AACGAGTCGCTGACCTGCC 62.575 63.158 13.59 0.00 32.18 4.85
110 111 4.056125 CGAGTCGCTGACCTGCCA 62.056 66.667 0.00 0.00 32.18 4.92
111 112 2.581354 GAGTCGCTGACCTGCCAT 59.419 61.111 5.29 0.00 32.18 4.40
112 113 1.078848 GAGTCGCTGACCTGCCATT 60.079 57.895 5.29 0.00 32.18 3.16
113 114 0.674895 GAGTCGCTGACCTGCCATTT 60.675 55.000 5.29 0.00 32.18 2.32
114 115 0.250901 AGTCGCTGACCTGCCATTTT 60.251 50.000 5.29 0.00 32.18 1.82
115 116 0.109597 GTCGCTGACCTGCCATTTTG 60.110 55.000 0.00 0.00 0.00 2.44
116 117 1.213537 CGCTGACCTGCCATTTTGG 59.786 57.895 0.00 0.00 41.55 3.28
117 118 1.243342 CGCTGACCTGCCATTTTGGA 61.243 55.000 0.00 0.00 40.96 3.53
118 119 0.968405 GCTGACCTGCCATTTTGGAA 59.032 50.000 0.00 0.00 40.96 3.53
119 120 1.344114 GCTGACCTGCCATTTTGGAAA 59.656 47.619 0.00 0.00 40.96 3.13
120 121 2.224257 GCTGACCTGCCATTTTGGAAAA 60.224 45.455 0.00 0.00 40.96 2.29
121 122 3.392882 CTGACCTGCCATTTTGGAAAAC 58.607 45.455 0.00 0.00 40.96 2.43
122 123 2.768527 TGACCTGCCATTTTGGAAAACA 59.231 40.909 0.00 0.00 40.96 2.83
123 124 3.130633 GACCTGCCATTTTGGAAAACAC 58.869 45.455 0.00 0.00 40.96 3.32
124 125 2.134346 CCTGCCATTTTGGAAAACACG 58.866 47.619 0.00 0.00 40.96 4.49
125 126 2.223923 CCTGCCATTTTGGAAAACACGA 60.224 45.455 0.00 0.00 40.96 4.35
126 127 3.452474 CTGCCATTTTGGAAAACACGAA 58.548 40.909 0.00 0.00 40.96 3.85
127 128 3.190874 TGCCATTTTGGAAAACACGAAC 58.809 40.909 0.00 0.00 40.96 3.95
128 129 3.190874 GCCATTTTGGAAAACACGAACA 58.809 40.909 0.00 0.00 40.96 3.18
129 130 3.619038 GCCATTTTGGAAAACACGAACAA 59.381 39.130 0.00 0.00 40.96 2.83
130 131 4.272261 GCCATTTTGGAAAACACGAACAAT 59.728 37.500 0.00 0.00 40.96 2.71
131 132 5.558083 GCCATTTTGGAAAACACGAACAATC 60.558 40.000 0.00 0.00 40.96 2.67
132 133 5.752955 CCATTTTGGAAAACACGAACAATCT 59.247 36.000 0.00 0.00 40.96 2.40
133 134 6.257630 CCATTTTGGAAAACACGAACAATCTT 59.742 34.615 0.00 0.00 40.96 2.40
134 135 7.201600 CCATTTTGGAAAACACGAACAATCTTT 60.202 33.333 0.00 0.00 40.96 2.52
135 136 6.639671 TTTGGAAAACACGAACAATCTTTG 57.360 33.333 0.00 0.00 0.00 2.77
136 137 5.568685 TGGAAAACACGAACAATCTTTGA 57.431 34.783 0.00 0.00 0.00 2.69
137 138 5.955488 TGGAAAACACGAACAATCTTTGAA 58.045 33.333 0.00 0.00 0.00 2.69
138 139 6.568869 TGGAAAACACGAACAATCTTTGAAT 58.431 32.000 0.00 0.00 0.00 2.57
139 140 6.695278 TGGAAAACACGAACAATCTTTGAATC 59.305 34.615 0.00 0.00 0.00 2.52
140 141 6.918022 GGAAAACACGAACAATCTTTGAATCT 59.082 34.615 0.00 0.00 0.00 2.40
141 142 8.073768 GGAAAACACGAACAATCTTTGAATCTA 58.926 33.333 0.00 0.00 0.00 1.98
142 143 9.612620 GAAAACACGAACAATCTTTGAATCTAT 57.387 29.630 0.00 0.00 0.00 1.98
143 144 9.965824 AAAACACGAACAATCTTTGAATCTATT 57.034 25.926 0.00 0.00 0.00 1.73
144 145 9.965824 AAACACGAACAATCTTTGAATCTATTT 57.034 25.926 0.00 0.00 0.00 1.40
145 146 9.965824 AACACGAACAATCTTTGAATCTATTTT 57.034 25.926 0.00 0.00 0.00 1.82
146 147 9.965824 ACACGAACAATCTTTGAATCTATTTTT 57.034 25.926 0.00 0.00 0.00 1.94
305 306 8.941127 TTTTTGAAATTTTCGGACAGTTTTTG 57.059 26.923 4.76 0.00 0.00 2.44
306 307 6.654793 TTGAAATTTTCGGACAGTTTTTGG 57.345 33.333 4.76 0.00 0.00 3.28
307 308 5.967088 TGAAATTTTCGGACAGTTTTTGGA 58.033 33.333 4.76 0.00 0.00 3.53
308 309 6.398918 TGAAATTTTCGGACAGTTTTTGGAA 58.601 32.000 4.76 0.00 0.00 3.53
309 310 6.874134 TGAAATTTTCGGACAGTTTTTGGAAA 59.126 30.769 4.76 0.00 0.00 3.13
310 311 7.550906 TGAAATTTTCGGACAGTTTTTGGAAAT 59.449 29.630 4.76 0.00 0.00 2.17
311 312 6.843069 ATTTTCGGACAGTTTTTGGAAATG 57.157 33.333 0.00 0.00 0.00 2.32
312 313 4.993029 TTCGGACAGTTTTTGGAAATGT 57.007 36.364 0.00 0.00 0.00 2.71
313 314 4.300189 TCGGACAGTTTTTGGAAATGTG 57.700 40.909 0.00 0.00 0.00 3.21
314 315 3.697045 TCGGACAGTTTTTGGAAATGTGT 59.303 39.130 0.00 0.00 31.32 3.72
315 316 4.882427 TCGGACAGTTTTTGGAAATGTGTA 59.118 37.500 0.00 0.00 29.78 2.90
316 317 4.973663 CGGACAGTTTTTGGAAATGTGTAC 59.026 41.667 0.00 0.00 29.78 2.90
317 318 5.449314 CGGACAGTTTTTGGAAATGTGTACA 60.449 40.000 0.00 0.00 30.40 2.90
318 319 5.746721 GGACAGTTTTTGGAAATGTGTACAC 59.253 40.000 19.36 19.36 30.95 2.90
319 320 6.405397 GGACAGTTTTTGGAAATGTGTACACT 60.405 38.462 25.60 6.76 30.95 3.55
320 321 6.930731 ACAGTTTTTGGAAATGTGTACACTT 58.069 32.000 25.60 17.34 0.00 3.16
321 322 7.382898 ACAGTTTTTGGAAATGTGTACACTTT 58.617 30.769 25.60 21.92 0.00 2.66
322 323 7.875554 ACAGTTTTTGGAAATGTGTACACTTTT 59.124 29.630 29.62 29.62 40.10 2.27
323 324 8.716909 CAGTTTTTGGAAATGTGTACACTTTTT 58.283 29.630 29.71 25.02 38.34 1.94
324 325 8.716909 AGTTTTTGGAAATGTGTACACTTTTTG 58.283 29.630 29.71 0.00 38.34 2.44
325 326 8.713271 GTTTTTGGAAATGTGTACACTTTTTGA 58.287 29.630 29.71 20.43 38.34 2.69
326 327 8.833231 TTTTGGAAATGTGTACACTTTTTGAA 57.167 26.923 29.71 23.45 38.34 2.69
327 328 7.820044 TTGGAAATGTGTACACTTTTTGAAC 57.180 32.000 29.71 22.26 38.34 3.18
328 329 7.164230 TGGAAATGTGTACACTTTTTGAACT 57.836 32.000 29.71 14.70 38.34 3.01
329 330 7.607250 TGGAAATGTGTACACTTTTTGAACTT 58.393 30.769 29.71 14.13 38.34 2.66
330 331 8.091449 TGGAAATGTGTACACTTTTTGAACTTT 58.909 29.630 29.71 13.55 38.34 2.66
331 332 8.931775 GGAAATGTGTACACTTTTTGAACTTTT 58.068 29.630 29.71 12.98 38.34 2.27
332 333 9.739786 GAAATGTGTACACTTTTTGAACTTTTG 57.260 29.630 29.71 0.00 38.34 2.44
333 334 9.482627 AAATGTGTACACTTTTTGAACTTTTGA 57.517 25.926 25.94 4.41 35.87 2.69
334 335 9.482627 AATGTGTACACTTTTTGAACTTTTGAA 57.517 25.926 25.60 0.52 0.00 2.69
335 336 8.288217 TGTGTACACTTTTTGAACTTTTGAAC 57.712 30.769 25.60 0.00 0.00 3.18
336 337 7.921214 TGTGTACACTTTTTGAACTTTTGAACA 59.079 29.630 25.60 0.00 0.00 3.18
337 338 8.756864 GTGTACACTTTTTGAACTTTTGAACAA 58.243 29.630 18.92 0.00 0.00 2.83
338 339 9.482627 TGTACACTTTTTGAACTTTTGAACAAT 57.517 25.926 0.00 0.00 0.00 2.71
449 450 5.447624 AAAATCGGTTTGTTACCTTCTGG 57.552 39.130 0.00 0.00 45.40 3.86
450 451 4.360951 AATCGGTTTGTTACCTTCTGGA 57.639 40.909 0.00 0.00 45.40 3.86
451 452 3.842007 TCGGTTTGTTACCTTCTGGAA 57.158 42.857 0.00 0.00 45.40 3.53
452 453 3.735591 TCGGTTTGTTACCTTCTGGAAG 58.264 45.455 3.57 3.57 45.40 3.46
465 466 4.074647 GGAAGGTTCCCACAACCG 57.925 61.111 0.00 0.00 44.82 4.44
466 467 2.265904 GGAAGGTTCCCACAACCGC 61.266 63.158 0.00 0.00 44.82 5.68
467 468 1.228154 GAAGGTTCCCACAACCGCT 60.228 57.895 0.00 0.00 44.82 5.52
468 469 0.035739 GAAGGTTCCCACAACCGCTA 59.964 55.000 0.00 0.00 44.82 4.26
469 470 0.696501 AAGGTTCCCACAACCGCTAT 59.303 50.000 0.00 0.00 44.82 2.97
470 471 1.575419 AGGTTCCCACAACCGCTATA 58.425 50.000 0.00 0.00 44.82 1.31
471 472 1.910671 AGGTTCCCACAACCGCTATAA 59.089 47.619 0.00 0.00 44.82 0.98
472 473 2.306512 AGGTTCCCACAACCGCTATAAA 59.693 45.455 0.00 0.00 44.82 1.40
473 474 2.421073 GGTTCCCACAACCGCTATAAAC 59.579 50.000 0.00 0.00 0.00 2.01
474 475 2.406596 TCCCACAACCGCTATAAACC 57.593 50.000 0.00 0.00 0.00 3.27
475 476 1.011333 CCCACAACCGCTATAAACCG 58.989 55.000 0.00 0.00 0.00 4.44
476 477 1.405797 CCCACAACCGCTATAAACCGA 60.406 52.381 0.00 0.00 0.00 4.69
477 478 1.662122 CCACAACCGCTATAAACCGAC 59.338 52.381 0.00 0.00 0.00 4.79
478 479 2.613691 CACAACCGCTATAAACCGACT 58.386 47.619 0.00 0.00 0.00 4.18
479 480 2.347452 CACAACCGCTATAAACCGACTG 59.653 50.000 0.00 0.00 0.00 3.51
480 481 1.931172 CAACCGCTATAAACCGACTGG 59.069 52.381 0.00 0.00 42.84 4.00
481 482 0.462789 ACCGCTATAAACCGACTGGG 59.537 55.000 0.00 0.00 40.75 4.45
482 483 0.249741 CCGCTATAAACCGACTGGGG 60.250 60.000 0.00 0.00 41.60 4.96
483 484 0.878961 CGCTATAAACCGACTGGGGC 60.879 60.000 0.00 0.00 41.60 5.80
484 485 0.534427 GCTATAAACCGACTGGGGCC 60.534 60.000 0.00 0.00 41.60 5.80
485 486 1.129058 CTATAAACCGACTGGGGCCT 58.871 55.000 0.84 0.00 41.60 5.19
486 487 1.489230 CTATAAACCGACTGGGGCCTT 59.511 52.381 0.84 0.00 41.60 4.35
487 488 0.255033 ATAAACCGACTGGGGCCTTC 59.745 55.000 0.84 0.00 41.60 3.46
488 489 1.844544 TAAACCGACTGGGGCCTTCC 61.845 60.000 0.84 0.00 41.60 3.46
489 490 4.974438 ACCGACTGGGGCCTTCCA 62.974 66.667 0.84 0.55 41.60 3.53
516 517 5.292671 GTTTCAAAACCGGATACTTCTCC 57.707 43.478 9.46 0.00 32.82 3.71
517 518 4.627284 TTCAAAACCGGATACTTCTCCA 57.373 40.909 9.46 0.00 34.78 3.86
518 519 3.934068 TCAAAACCGGATACTTCTCCAC 58.066 45.455 9.46 0.00 34.78 4.02
519 520 2.667473 AAACCGGATACTTCTCCACG 57.333 50.000 9.46 0.00 34.78 4.94
520 521 0.175073 AACCGGATACTTCTCCACGC 59.825 55.000 9.46 0.00 34.78 5.34
521 522 0.968901 ACCGGATACTTCTCCACGCA 60.969 55.000 9.46 0.00 34.78 5.24
522 523 0.174845 CCGGATACTTCTCCACGCAA 59.825 55.000 0.00 0.00 34.78 4.85
523 524 1.404986 CCGGATACTTCTCCACGCAAA 60.405 52.381 0.00 0.00 34.78 3.68
524 525 2.550978 CGGATACTTCTCCACGCAAAT 58.449 47.619 0.00 0.00 34.78 2.32
525 526 2.285220 CGGATACTTCTCCACGCAAATG 59.715 50.000 0.00 0.00 34.78 2.32
526 527 2.614057 GGATACTTCTCCACGCAAATGG 59.386 50.000 0.00 0.00 41.57 3.16
527 528 2.107950 TACTTCTCCACGCAAATGGG 57.892 50.000 0.00 0.00 40.49 4.00
528 529 1.244019 ACTTCTCCACGCAAATGGGC 61.244 55.000 0.00 0.00 40.49 5.36
529 530 1.937546 CTTCTCCACGCAAATGGGCC 61.938 60.000 0.00 0.00 40.49 5.80
530 531 3.814268 CTCCACGCAAATGGGCCG 61.814 66.667 0.00 0.00 40.49 6.13
544 545 3.857038 GCCGGGCCATCCTCGTTA 61.857 66.667 8.12 0.00 0.00 3.18
545 546 2.421739 CCGGGCCATCCTCGTTAG 59.578 66.667 4.39 0.00 0.00 2.34
546 547 2.432300 CCGGGCCATCCTCGTTAGT 61.432 63.158 4.39 0.00 0.00 2.24
547 548 1.520666 CGGGCCATCCTCGTTAGTT 59.479 57.895 4.39 0.00 0.00 2.24
548 549 0.107848 CGGGCCATCCTCGTTAGTTT 60.108 55.000 4.39 0.00 0.00 2.66
549 550 1.379527 GGGCCATCCTCGTTAGTTTG 58.620 55.000 4.39 0.00 0.00 2.93
550 551 1.339727 GGGCCATCCTCGTTAGTTTGT 60.340 52.381 4.39 0.00 0.00 2.83
551 552 2.007608 GGCCATCCTCGTTAGTTTGTC 58.992 52.381 0.00 0.00 0.00 3.18
552 553 2.614481 GGCCATCCTCGTTAGTTTGTCA 60.614 50.000 0.00 0.00 0.00 3.58
553 554 3.270877 GCCATCCTCGTTAGTTTGTCAT 58.729 45.455 0.00 0.00 0.00 3.06
554 555 4.439057 GCCATCCTCGTTAGTTTGTCATA 58.561 43.478 0.00 0.00 0.00 2.15
555 556 5.057149 GCCATCCTCGTTAGTTTGTCATAT 58.943 41.667 0.00 0.00 0.00 1.78
556 557 6.220930 GCCATCCTCGTTAGTTTGTCATATA 58.779 40.000 0.00 0.00 0.00 0.86
557 558 6.704493 GCCATCCTCGTTAGTTTGTCATATAA 59.296 38.462 0.00 0.00 0.00 0.98
558 559 7.225931 GCCATCCTCGTTAGTTTGTCATATAAA 59.774 37.037 0.00 0.00 0.00 1.40
559 560 9.273016 CCATCCTCGTTAGTTTGTCATATAAAT 57.727 33.333 0.00 0.00 0.00 1.40
561 562 8.138365 TCCTCGTTAGTTTGTCATATAAATGC 57.862 34.615 0.00 0.00 32.76 3.56
562 563 7.042992 TCCTCGTTAGTTTGTCATATAAATGCG 60.043 37.037 0.00 0.00 32.76 4.73
563 564 6.939627 TCGTTAGTTTGTCATATAAATGCGG 58.060 36.000 0.00 0.00 32.76 5.69
564 565 5.619607 CGTTAGTTTGTCATATAAATGCGGC 59.380 40.000 0.00 0.00 32.76 6.53
565 566 6.491394 GTTAGTTTGTCATATAAATGCGGCA 58.509 36.000 4.58 4.58 32.76 5.69
566 567 5.574891 AGTTTGTCATATAAATGCGGCAA 57.425 34.783 6.82 0.00 32.76 4.52
567 568 5.581605 AGTTTGTCATATAAATGCGGCAAG 58.418 37.500 6.82 0.00 32.76 4.01
568 569 5.125417 AGTTTGTCATATAAATGCGGCAAGT 59.875 36.000 6.82 0.00 32.76 3.16
569 570 6.317642 AGTTTGTCATATAAATGCGGCAAGTA 59.682 34.615 6.82 2.29 32.76 2.24
570 571 5.922739 TGTCATATAAATGCGGCAAGTAG 57.077 39.130 6.82 0.00 32.76 2.57
571 572 4.754618 TGTCATATAAATGCGGCAAGTAGG 59.245 41.667 6.82 0.00 32.76 3.18
572 573 4.154195 GTCATATAAATGCGGCAAGTAGGG 59.846 45.833 6.82 0.00 32.76 3.53
573 574 4.041075 TCATATAAATGCGGCAAGTAGGGA 59.959 41.667 6.82 0.00 32.76 4.20
574 575 3.508845 ATAAATGCGGCAAGTAGGGAT 57.491 42.857 6.82 0.00 0.00 3.85
575 576 2.143876 AAATGCGGCAAGTAGGGATT 57.856 45.000 6.82 0.00 0.00 3.01
576 577 2.143876 AATGCGGCAAGTAGGGATTT 57.856 45.000 6.82 0.00 0.00 2.17
577 578 1.680338 ATGCGGCAAGTAGGGATTTC 58.320 50.000 6.82 0.00 0.00 2.17
578 579 0.393808 TGCGGCAAGTAGGGATTTCC 60.394 55.000 0.00 0.00 0.00 3.13
603 604 6.915544 CAGACAAATCTGCTACATACACAT 57.084 37.500 0.00 0.00 45.83 3.21
605 606 8.424274 CAGACAAATCTGCTACATACACATAA 57.576 34.615 0.00 0.00 45.83 1.90
606 607 9.049523 CAGACAAATCTGCTACATACACATAAT 57.950 33.333 0.00 0.00 45.83 1.28
607 608 9.265901 AGACAAATCTGCTACATACACATAATC 57.734 33.333 0.00 0.00 32.29 1.75
608 609 9.265901 GACAAATCTGCTACATACACATAATCT 57.734 33.333 0.00 0.00 0.00 2.40
609 610 9.618890 ACAAATCTGCTACATACACATAATCTT 57.381 29.630 0.00 0.00 0.00 2.40
613 614 8.877808 TCTGCTACATACACATAATCTTCTTG 57.122 34.615 0.00 0.00 0.00 3.02
614 615 7.928167 TCTGCTACATACACATAATCTTCTTGG 59.072 37.037 0.00 0.00 0.00 3.61
615 616 6.483307 TGCTACATACACATAATCTTCTTGGC 59.517 38.462 0.00 0.00 0.00 4.52
616 617 6.073003 GCTACATACACATAATCTTCTTGGCC 60.073 42.308 0.00 0.00 0.00 5.36
617 618 5.133221 ACATACACATAATCTTCTTGGCCC 58.867 41.667 0.00 0.00 0.00 5.80
618 619 3.737559 ACACATAATCTTCTTGGCCCA 57.262 42.857 0.00 0.00 0.00 5.36
619 620 3.624777 ACACATAATCTTCTTGGCCCAG 58.375 45.455 0.00 0.00 0.00 4.45
620 621 3.266772 ACACATAATCTTCTTGGCCCAGA 59.733 43.478 1.49 1.49 0.00 3.86
621 622 3.881688 CACATAATCTTCTTGGCCCAGAG 59.118 47.826 6.64 2.21 0.00 3.35
622 623 2.717639 TAATCTTCTTGGCCCAGAGC 57.282 50.000 6.64 0.00 42.60 4.09
623 624 0.700564 AATCTTCTTGGCCCAGAGCA 59.299 50.000 6.64 0.00 46.50 4.26
624 625 0.924823 ATCTTCTTGGCCCAGAGCAT 59.075 50.000 6.64 0.54 46.50 3.79
625 626 1.583556 TCTTCTTGGCCCAGAGCATA 58.416 50.000 6.64 0.00 46.50 3.14
626 627 2.130193 TCTTCTTGGCCCAGAGCATAT 58.870 47.619 6.64 0.00 46.50 1.78
627 628 3.317406 TCTTCTTGGCCCAGAGCATATA 58.683 45.455 6.64 0.00 46.50 0.86
628 629 3.912528 TCTTCTTGGCCCAGAGCATATAT 59.087 43.478 6.64 0.00 46.50 0.86
629 630 5.093677 TCTTCTTGGCCCAGAGCATATATA 58.906 41.667 6.64 0.00 46.50 0.86
630 631 5.728253 TCTTCTTGGCCCAGAGCATATATAT 59.272 40.000 6.64 0.00 46.50 0.86
631 632 6.902974 TCTTCTTGGCCCAGAGCATATATATA 59.097 38.462 6.64 0.00 46.50 0.86
632 633 7.570232 TCTTCTTGGCCCAGAGCATATATATAT 59.430 37.037 6.64 0.00 46.50 0.86
633 634 8.797436 TTCTTGGCCCAGAGCATATATATATA 57.203 34.615 6.64 4.92 46.50 0.86
634 635 8.427902 TCTTGGCCCAGAGCATATATATATAG 57.572 38.462 1.49 2.25 46.50 1.31
635 636 7.455953 TCTTGGCCCAGAGCATATATATATAGG 59.544 40.741 1.49 9.56 46.50 2.57
636 637 5.485353 TGGCCCAGAGCATATATATATAGGC 59.515 44.000 25.00 25.00 46.50 3.93
637 638 5.104735 GGCCCAGAGCATATATATATAGGCC 60.105 48.000 27.38 24.12 44.47 5.19
638 639 5.485353 GCCCAGAGCATATATATATAGGCCA 59.515 44.000 27.38 0.78 44.47 5.36
639 640 6.157645 GCCCAGAGCATATATATATAGGCCAT 59.842 42.308 27.38 17.54 44.47 4.40
640 641 7.563020 CCCAGAGCATATATATATAGGCCATG 58.437 42.308 27.38 24.59 44.47 3.66
641 642 7.401204 CCCAGAGCATATATATATAGGCCATGA 59.599 40.741 27.38 0.00 44.47 3.07
642 643 8.819845 CCAGAGCATATATATATAGGCCATGAA 58.180 37.037 27.38 0.00 44.47 2.57
643 644 9.872721 CAGAGCATATATATATAGGCCATGAAG 57.127 37.037 27.38 13.36 44.47 3.02
644 645 9.834678 AGAGCATATATATATAGGCCATGAAGA 57.165 33.333 27.38 0.00 44.47 2.87
650 651 8.948631 ATATATATAGGCCATGAAGAACAACG 57.051 34.615 5.01 0.00 0.00 4.10
651 652 2.107950 TAGGCCATGAAGAACAACGG 57.892 50.000 5.01 0.00 0.00 4.44
652 653 0.400213 AGGCCATGAAGAACAACGGA 59.600 50.000 5.01 0.00 0.00 4.69
653 654 0.804989 GGCCATGAAGAACAACGGAG 59.195 55.000 0.00 0.00 0.00 4.63
654 655 1.610624 GGCCATGAAGAACAACGGAGA 60.611 52.381 0.00 0.00 0.00 3.71
655 656 1.734465 GCCATGAAGAACAACGGAGAG 59.266 52.381 0.00 0.00 0.00 3.20
656 657 2.612972 GCCATGAAGAACAACGGAGAGA 60.613 50.000 0.00 0.00 0.00 3.10
657 658 3.664107 CCATGAAGAACAACGGAGAGAA 58.336 45.455 0.00 0.00 0.00 2.87
658 659 4.065088 CCATGAAGAACAACGGAGAGAAA 58.935 43.478 0.00 0.00 0.00 2.52
659 660 4.515191 CCATGAAGAACAACGGAGAGAAAA 59.485 41.667 0.00 0.00 0.00 2.29
660 661 5.182001 CCATGAAGAACAACGGAGAGAAAAT 59.818 40.000 0.00 0.00 0.00 1.82
759 772 8.462016 CACATATAAGATCTGACGGATACATCA 58.538 37.037 0.00 0.00 34.33 3.07
760 773 8.462811 ACATATAAGATCTGACGGATACATCAC 58.537 37.037 0.00 0.00 34.33 3.06
787 800 6.545504 TTGAGCTACAATTGTTTCTCAGAC 57.454 37.500 26.82 14.29 36.91 3.51
789 802 6.054941 TGAGCTACAATTGTTTCTCAGACAA 58.945 36.000 25.69 12.23 40.86 3.18
792 805 6.318648 AGCTACAATTGTTTCTCAGACAAACA 59.681 34.615 17.78 0.12 41.05 2.83
796 809 4.349663 TTGTTTCTCAGACAAACAACGG 57.650 40.909 11.50 0.00 44.82 4.44
836 858 7.346751 AGATGCTTTGTTTTCAGGAAGTTAA 57.653 32.000 0.00 0.00 0.00 2.01
868 890 9.651718 CTTTGAGGATACGCTAATTGAATAAAC 57.348 33.333 0.00 0.00 46.39 2.01
869 891 7.402811 TGAGGATACGCTAATTGAATAAACG 57.597 36.000 0.00 0.00 46.39 3.60
871 893 6.518493 AGGATACGCTAATTGAATAAACGGA 58.482 36.000 0.00 0.00 46.39 4.69
872 894 6.987992 AGGATACGCTAATTGAATAAACGGAA 59.012 34.615 0.00 0.00 46.39 4.30
873 895 7.496591 AGGATACGCTAATTGAATAAACGGAAA 59.503 33.333 0.00 0.00 46.39 3.13
923 1061 2.427245 CGATCCCTCTGGCCGTCTT 61.427 63.158 0.00 0.00 0.00 3.01
957 1096 1.110442 ATGGCGAGAGACTCTCCTTG 58.890 55.000 23.78 12.91 40.34 3.61
962 1101 2.912771 CGAGAGACTCTCCTTGCTCTA 58.087 52.381 23.78 0.00 40.34 2.43
1063 1210 0.686224 CTGCCTCCTCATCCTCCATC 59.314 60.000 0.00 0.00 0.00 3.51
1067 1214 1.825281 CTCCTCATCCTCCATCCGCC 61.825 65.000 0.00 0.00 0.00 6.13
1148 1295 4.557205 GGCTCTGACGGTAGGTATATTTG 58.443 47.826 0.00 0.00 0.00 2.32
1150 1297 5.242393 GGCTCTGACGGTAGGTATATTTGTA 59.758 44.000 0.00 0.00 0.00 2.41
1151 1298 6.071503 GGCTCTGACGGTAGGTATATTTGTAT 60.072 42.308 0.00 0.00 0.00 2.29
1152 1299 7.121759 GGCTCTGACGGTAGGTATATTTGTATA 59.878 40.741 0.00 0.00 0.00 1.47
1206 1388 2.969238 ATGCATGCTAGGACGCGC 60.969 61.111 20.33 0.00 0.00 6.86
1403 1592 1.766143 CGGCGCTTGCTATCAGGTTC 61.766 60.000 7.64 0.00 39.13 3.62
1468 1671 2.872388 CGTCACAGACCAGTGCCCT 61.872 63.158 0.00 0.00 39.35 5.19
1679 1931 5.954153 AGTGTGATCCTCATCTCTTTGAT 57.046 39.130 0.00 0.00 35.40 2.57
1697 1957 0.741221 ATTTCTTCGCTCGCAGGGTC 60.741 55.000 0.00 0.00 0.00 4.46
1950 2210 3.491652 GCAAGAAGCTCGTCGCCC 61.492 66.667 0.00 0.00 41.15 6.13
1965 2225 2.275089 CCCGCAATGTCATCCCCA 59.725 61.111 0.00 0.00 0.00 4.96
2042 2302 0.830648 GTCCGTGGGATCAATGGAGA 59.169 55.000 8.47 0.00 32.73 3.71
2210 2474 7.468357 GCTGATCTGCTGTTTATCTGCTTAATT 60.468 37.037 16.60 0.00 39.85 1.40
2211 2475 8.284945 TGATCTGCTGTTTATCTGCTTAATTT 57.715 30.769 0.00 0.00 40.79 1.82
2213 2477 8.922058 ATCTGCTGTTTATCTGCTTAATTTTG 57.078 30.769 0.00 0.00 40.79 2.44
2215 2479 9.008965 TCTGCTGTTTATCTGCTTAATTTTGTA 57.991 29.630 0.00 0.00 40.79 2.41
2216 2480 8.964420 TGCTGTTTATCTGCTTAATTTTGTAC 57.036 30.769 0.00 0.00 40.79 2.90
2218 2482 9.278734 GCTGTTTATCTGCTTAATTTTGTACTC 57.721 33.333 0.00 0.00 37.88 2.59
2292 3468 9.840427 ATCTTTCGAGTATTAAATTTGTGTTGG 57.160 29.630 0.00 0.00 0.00 3.77
2442 4361 4.050553 TGCAACTGACAAATAGCAAAAGC 58.949 39.130 0.00 0.00 0.00 3.51
2508 4427 2.736192 CACGGATTTTGTTTTCCATGGC 59.264 45.455 6.96 0.00 31.99 4.40
2630 4553 4.697514 AGTGTTTCATAGACATGGATCGG 58.302 43.478 0.00 0.00 32.61 4.18
2656 4580 7.870445 GCCTAAAATTTGGTATGTCTTGTTTCA 59.130 33.333 0.00 0.00 0.00 2.69
2657 4581 9.927668 CCTAAAATTTGGTATGTCTTGTTTCAT 57.072 29.630 0.00 0.00 0.00 2.57
2847 4829 6.176183 AGGTCATCTAAAGGACAAATCAGTG 58.824 40.000 0.00 0.00 37.94 3.66
2959 4952 9.440773 TCACTATAATTATTTAGGAGCATGCAG 57.559 33.333 21.98 4.71 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.985318 GAGTTTTGAACTTTGATGATAGATCTG 57.015 33.333 5.18 0.00 43.03 2.90
5 6 8.156820 TGGAGAGTTTTGAACTTTGATGATAGA 58.843 33.333 0.00 0.00 43.03 1.98
6 7 8.327941 TGGAGAGTTTTGAACTTTGATGATAG 57.672 34.615 0.00 0.00 43.03 2.08
7 8 8.690203 TTGGAGAGTTTTGAACTTTGATGATA 57.310 30.769 0.00 0.00 43.03 2.15
8 9 7.587037 TTGGAGAGTTTTGAACTTTGATGAT 57.413 32.000 0.00 0.00 43.03 2.45
9 10 7.093988 TGTTTGGAGAGTTTTGAACTTTGATGA 60.094 33.333 0.00 0.00 43.03 2.92
10 11 7.035004 TGTTTGGAGAGTTTTGAACTTTGATG 58.965 34.615 0.00 0.00 43.03 3.07
11 12 7.169158 TGTTTGGAGAGTTTTGAACTTTGAT 57.831 32.000 0.00 0.00 43.03 2.57
12 13 6.582677 TGTTTGGAGAGTTTTGAACTTTGA 57.417 33.333 0.00 0.00 43.03 2.69
13 14 8.925161 TTATGTTTGGAGAGTTTTGAACTTTG 57.075 30.769 0.00 0.00 43.03 2.77
14 15 9.533253 CATTATGTTTGGAGAGTTTTGAACTTT 57.467 29.630 0.00 0.00 43.03 2.66
15 16 8.912988 TCATTATGTTTGGAGAGTTTTGAACTT 58.087 29.630 0.00 0.00 43.03 2.66
16 17 8.463930 TCATTATGTTTGGAGAGTTTTGAACT 57.536 30.769 0.00 0.00 46.38 3.01
17 18 9.528018 TTTCATTATGTTTGGAGAGTTTTGAAC 57.472 29.630 0.00 0.00 0.00 3.18
36 37 9.177608 CCAGAGACCTTGATGTAATTTTCATTA 57.822 33.333 0.00 0.00 0.00 1.90
37 38 7.890127 TCCAGAGACCTTGATGTAATTTTCATT 59.110 33.333 0.00 0.00 0.00 2.57
38 39 7.405292 TCCAGAGACCTTGATGTAATTTTCAT 58.595 34.615 0.00 0.00 0.00 2.57
39 40 6.778821 TCCAGAGACCTTGATGTAATTTTCA 58.221 36.000 0.00 0.00 0.00 2.69
40 41 6.183360 GCTCCAGAGACCTTGATGTAATTTTC 60.183 42.308 0.00 0.00 0.00 2.29
41 42 5.649831 GCTCCAGAGACCTTGATGTAATTTT 59.350 40.000 0.00 0.00 0.00 1.82
42 43 5.189180 GCTCCAGAGACCTTGATGTAATTT 58.811 41.667 0.00 0.00 0.00 1.82
43 44 4.225942 TGCTCCAGAGACCTTGATGTAATT 59.774 41.667 0.00 0.00 0.00 1.40
44 45 3.776969 TGCTCCAGAGACCTTGATGTAAT 59.223 43.478 0.00 0.00 0.00 1.89
45 46 3.055819 GTGCTCCAGAGACCTTGATGTAA 60.056 47.826 0.00 0.00 0.00 2.41
46 47 2.497675 GTGCTCCAGAGACCTTGATGTA 59.502 50.000 0.00 0.00 0.00 2.29
47 48 1.277557 GTGCTCCAGAGACCTTGATGT 59.722 52.381 0.00 0.00 0.00 3.06
48 49 1.406614 GGTGCTCCAGAGACCTTGATG 60.407 57.143 0.00 0.00 0.00 3.07
49 50 0.908198 GGTGCTCCAGAGACCTTGAT 59.092 55.000 0.00 0.00 0.00 2.57
50 51 0.471780 TGGTGCTCCAGAGACCTTGA 60.472 55.000 2.64 0.00 39.03 3.02
51 52 0.397941 TTGGTGCTCCAGAGACCTTG 59.602 55.000 7.68 0.00 45.22 3.61
52 53 0.689623 CTTGGTGCTCCAGAGACCTT 59.310 55.000 7.68 0.00 45.22 3.50
53 54 1.835927 GCTTGGTGCTCCAGAGACCT 61.836 60.000 7.68 0.00 45.22 3.85
54 55 1.376553 GCTTGGTGCTCCAGAGACC 60.377 63.158 7.68 4.38 45.22 3.85
55 56 1.739562 CGCTTGGTGCTCCAGAGAC 60.740 63.158 7.68 5.03 45.22 3.36
56 57 1.260538 ATCGCTTGGTGCTCCAGAGA 61.261 55.000 7.68 9.74 45.22 3.10
57 58 0.809241 GATCGCTTGGTGCTCCAGAG 60.809 60.000 7.68 9.54 45.22 3.35
58 59 1.219124 GATCGCTTGGTGCTCCAGA 59.781 57.895 7.68 2.69 45.22 3.86
59 60 0.392193 AAGATCGCTTGGTGCTCCAG 60.392 55.000 7.68 4.01 45.22 3.86
60 61 0.036732 AAAGATCGCTTGGTGCTCCA 59.963 50.000 2.64 2.64 42.66 3.86
61 62 0.449388 CAAAGATCGCTTGGTGCTCC 59.551 55.000 0.00 0.00 40.11 4.70
62 63 1.129437 GACAAAGATCGCTTGGTGCTC 59.871 52.381 13.18 1.24 38.41 4.26
63 64 1.160137 GACAAAGATCGCTTGGTGCT 58.840 50.000 13.18 0.00 38.41 4.40
64 65 0.179215 CGACAAAGATCGCTTGGTGC 60.179 55.000 13.18 4.05 38.41 5.01
65 66 3.955429 CGACAAAGATCGCTTGGTG 57.045 52.632 13.18 3.80 38.41 4.17
72 73 0.389817 TCTGGTGGCGACAAAGATCG 60.390 55.000 0.00 0.00 46.06 3.69
73 74 1.464997 GTTCTGGTGGCGACAAAGATC 59.535 52.381 5.78 2.20 46.06 2.75
74 75 1.523758 GTTCTGGTGGCGACAAAGAT 58.476 50.000 5.78 0.00 46.06 2.40
75 76 0.878523 CGTTCTGGTGGCGACAAAGA 60.879 55.000 0.00 0.00 46.06 2.52
76 77 0.878523 TCGTTCTGGTGGCGACAAAG 60.879 55.000 0.00 0.00 46.06 2.77
77 78 0.878523 CTCGTTCTGGTGGCGACAAA 60.879 55.000 0.00 0.00 46.06 2.83
78 79 1.300620 CTCGTTCTGGTGGCGACAA 60.301 57.895 0.00 0.00 46.06 3.18
79 80 2.338620 CTCGTTCTGGTGGCGACA 59.661 61.111 0.00 0.00 38.70 4.35
80 81 1.733399 GACTCGTTCTGGTGGCGAC 60.733 63.158 0.00 0.00 0.00 5.19
81 82 2.649034 GACTCGTTCTGGTGGCGA 59.351 61.111 0.00 0.00 0.00 5.54
82 83 2.805353 CGACTCGTTCTGGTGGCG 60.805 66.667 0.00 0.00 0.00 5.69
83 84 3.112709 GCGACTCGTTCTGGTGGC 61.113 66.667 0.00 0.00 0.00 5.01
84 85 1.734477 CAGCGACTCGTTCTGGTGG 60.734 63.158 0.00 0.00 0.00 4.61
85 86 1.004277 GTCAGCGACTCGTTCTGGTG 61.004 60.000 0.00 0.00 0.00 4.17
86 87 1.286260 GTCAGCGACTCGTTCTGGT 59.714 57.895 0.00 0.00 0.00 4.00
87 88 1.444553 GGTCAGCGACTCGTTCTGG 60.445 63.158 0.00 0.00 32.47 3.86
88 89 0.730834 CAGGTCAGCGACTCGTTCTG 60.731 60.000 0.00 0.28 32.47 3.02
89 90 1.581954 CAGGTCAGCGACTCGTTCT 59.418 57.895 0.00 0.00 32.47 3.01
90 91 2.089349 GCAGGTCAGCGACTCGTTC 61.089 63.158 0.00 0.00 32.47 3.95
91 92 2.049063 GCAGGTCAGCGACTCGTT 60.049 61.111 0.00 0.00 32.47 3.85
92 93 4.057428 GGCAGGTCAGCGACTCGT 62.057 66.667 0.00 0.00 34.64 4.18
93 94 2.842394 AATGGCAGGTCAGCGACTCG 62.842 60.000 8.26 0.00 34.64 4.18
94 95 0.674895 AAATGGCAGGTCAGCGACTC 60.675 55.000 8.26 0.70 34.64 3.36
95 96 0.250901 AAAATGGCAGGTCAGCGACT 60.251 50.000 8.26 0.00 34.64 4.18
96 97 0.109597 CAAAATGGCAGGTCAGCGAC 60.110 55.000 0.00 0.79 34.64 5.19
97 98 1.243342 CCAAAATGGCAGGTCAGCGA 61.243 55.000 0.00 0.00 34.64 4.93
98 99 1.213537 CCAAAATGGCAGGTCAGCG 59.786 57.895 0.00 0.00 34.64 5.18
99 100 0.968405 TTCCAAAATGGCAGGTCAGC 59.032 50.000 0.00 0.00 37.47 4.26
100 101 3.181467 TGTTTTCCAAAATGGCAGGTCAG 60.181 43.478 0.00 0.00 37.47 3.51
101 102 2.768527 TGTTTTCCAAAATGGCAGGTCA 59.231 40.909 0.00 0.00 37.47 4.02
102 103 3.130633 GTGTTTTCCAAAATGGCAGGTC 58.869 45.455 0.00 0.00 37.47 3.85
103 104 2.482839 CGTGTTTTCCAAAATGGCAGGT 60.483 45.455 0.00 0.00 37.47 4.00
104 105 2.134346 CGTGTTTTCCAAAATGGCAGG 58.866 47.619 0.00 0.00 37.47 4.85
105 106 3.090952 TCGTGTTTTCCAAAATGGCAG 57.909 42.857 0.00 0.00 37.47 4.85
106 107 3.190874 GTTCGTGTTTTCCAAAATGGCA 58.809 40.909 0.00 0.00 37.47 4.92
107 108 3.190874 TGTTCGTGTTTTCCAAAATGGC 58.809 40.909 0.00 0.00 37.47 4.40
108 109 5.752955 AGATTGTTCGTGTTTTCCAAAATGG 59.247 36.000 0.00 0.00 39.43 3.16
109 110 6.826893 AGATTGTTCGTGTTTTCCAAAATG 57.173 33.333 0.00 0.00 0.00 2.32
110 111 7.547370 TCAAAGATTGTTCGTGTTTTCCAAAAT 59.453 29.630 0.00 0.00 0.00 1.82
111 112 6.868864 TCAAAGATTGTTCGTGTTTTCCAAAA 59.131 30.769 0.00 0.00 0.00 2.44
112 113 6.390721 TCAAAGATTGTTCGTGTTTTCCAAA 58.609 32.000 0.00 0.00 0.00 3.28
113 114 5.955488 TCAAAGATTGTTCGTGTTTTCCAA 58.045 33.333 0.00 0.00 0.00 3.53
114 115 5.568685 TCAAAGATTGTTCGTGTTTTCCA 57.431 34.783 0.00 0.00 0.00 3.53
115 116 6.918022 AGATTCAAAGATTGTTCGTGTTTTCC 59.082 34.615 0.00 0.00 0.00 3.13
116 117 7.914537 AGATTCAAAGATTGTTCGTGTTTTC 57.085 32.000 0.00 0.00 0.00 2.29
117 118 9.965824 AATAGATTCAAAGATTGTTCGTGTTTT 57.034 25.926 0.00 0.00 0.00 2.43
118 119 9.965824 AAATAGATTCAAAGATTGTTCGTGTTT 57.034 25.926 0.00 0.00 0.00 2.83
119 120 9.965824 AAAATAGATTCAAAGATTGTTCGTGTT 57.034 25.926 0.00 0.00 0.00 3.32
120 121 9.965824 AAAAATAGATTCAAAGATTGTTCGTGT 57.034 25.926 0.00 0.00 0.00 4.49
280 281 8.017946 CCAAAAACTGTCCGAAAATTTCAAAAA 58.982 29.630 6.53 0.00 0.00 1.94
281 282 7.387948 TCCAAAAACTGTCCGAAAATTTCAAAA 59.612 29.630 6.53 0.00 0.00 2.44
282 283 6.874134 TCCAAAAACTGTCCGAAAATTTCAAA 59.126 30.769 6.53 0.00 0.00 2.69
283 284 6.398918 TCCAAAAACTGTCCGAAAATTTCAA 58.601 32.000 6.53 0.00 0.00 2.69
284 285 5.967088 TCCAAAAACTGTCCGAAAATTTCA 58.033 33.333 6.53 0.00 0.00 2.69
285 286 6.895607 TTCCAAAAACTGTCCGAAAATTTC 57.104 33.333 0.00 0.00 0.00 2.17
286 287 7.335673 ACATTTCCAAAAACTGTCCGAAAATTT 59.664 29.630 0.00 0.00 0.00 1.82
287 288 6.821160 ACATTTCCAAAAACTGTCCGAAAATT 59.179 30.769 0.00 0.00 0.00 1.82
288 289 6.257630 CACATTTCCAAAAACTGTCCGAAAAT 59.742 34.615 0.00 0.00 0.00 1.82
289 290 5.578727 CACATTTCCAAAAACTGTCCGAAAA 59.421 36.000 0.00 0.00 0.00 2.29
290 291 5.105752 CACATTTCCAAAAACTGTCCGAAA 58.894 37.500 0.00 0.00 0.00 3.46
291 292 4.158764 ACACATTTCCAAAAACTGTCCGAA 59.841 37.500 0.00 0.00 0.00 4.30
292 293 3.697045 ACACATTTCCAAAAACTGTCCGA 59.303 39.130 0.00 0.00 0.00 4.55
293 294 4.040445 ACACATTTCCAAAAACTGTCCG 57.960 40.909 0.00 0.00 0.00 4.79
294 295 5.746721 GTGTACACATTTCCAAAAACTGTCC 59.253 40.000 21.14 0.00 0.00 4.02
295 296 6.560711 AGTGTACACATTTCCAAAAACTGTC 58.439 36.000 27.06 0.00 0.00 3.51
296 297 6.524101 AGTGTACACATTTCCAAAAACTGT 57.476 33.333 27.06 0.00 0.00 3.55
297 298 7.826260 AAAGTGTACACATTTCCAAAAACTG 57.174 32.000 27.06 0.00 0.00 3.16
298 299 8.716909 CAAAAAGTGTACACATTTCCAAAAACT 58.283 29.630 24.71 8.18 31.92 2.66
299 300 8.713271 TCAAAAAGTGTACACATTTCCAAAAAC 58.287 29.630 24.71 0.00 31.92 2.43
300 301 8.833231 TCAAAAAGTGTACACATTTCCAAAAA 57.167 26.923 24.71 8.41 31.92 1.94
301 302 8.713271 GTTCAAAAAGTGTACACATTTCCAAAA 58.287 29.630 24.71 15.23 31.92 2.44
302 303 8.091449 AGTTCAAAAAGTGTACACATTTCCAAA 58.909 29.630 24.71 17.11 31.92 3.28
303 304 7.607250 AGTTCAAAAAGTGTACACATTTCCAA 58.393 30.769 24.71 18.03 31.92 3.53
304 305 7.164230 AGTTCAAAAAGTGTACACATTTCCA 57.836 32.000 24.71 14.08 31.92 3.53
305 306 8.474006 AAAGTTCAAAAAGTGTACACATTTCC 57.526 30.769 24.71 14.88 31.92 3.13
306 307 9.739786 CAAAAGTTCAAAAAGTGTACACATTTC 57.260 29.630 24.71 14.66 31.92 2.17
307 308 9.482627 TCAAAAGTTCAAAAAGTGTACACATTT 57.517 25.926 27.06 23.55 34.19 2.32
308 309 9.482627 TTCAAAAGTTCAAAAAGTGTACACATT 57.517 25.926 27.06 19.06 30.22 2.71
309 310 8.921670 GTTCAAAAGTTCAAAAAGTGTACACAT 58.078 29.630 27.06 13.66 30.22 3.21
310 311 7.921214 TGTTCAAAAGTTCAAAAAGTGTACACA 59.079 29.630 27.06 2.93 30.22 3.72
311 312 8.288217 TGTTCAAAAGTTCAAAAAGTGTACAC 57.712 30.769 18.56 18.56 30.22 2.90
312 313 8.873215 TTGTTCAAAAGTTCAAAAAGTGTACA 57.127 26.923 0.00 0.00 30.22 2.90
453 454 2.421073 GGTTTATAGCGGTTGTGGGAAC 59.579 50.000 0.00 0.00 0.00 3.62
454 455 2.713877 GGTTTATAGCGGTTGTGGGAA 58.286 47.619 0.00 0.00 0.00 3.97
455 456 1.405797 CGGTTTATAGCGGTTGTGGGA 60.406 52.381 0.00 0.00 41.36 4.37
456 457 1.011333 CGGTTTATAGCGGTTGTGGG 58.989 55.000 0.00 0.00 41.36 4.61
457 458 1.662122 GTCGGTTTATAGCGGTTGTGG 59.338 52.381 4.97 0.00 44.94 4.17
458 459 2.347452 CAGTCGGTTTATAGCGGTTGTG 59.653 50.000 4.97 0.00 44.94 3.33
459 460 2.613691 CAGTCGGTTTATAGCGGTTGT 58.386 47.619 4.97 0.00 44.94 3.32
460 461 1.931172 CCAGTCGGTTTATAGCGGTTG 59.069 52.381 4.97 4.25 44.94 3.77
461 462 1.134610 CCCAGTCGGTTTATAGCGGTT 60.135 52.381 4.97 0.00 44.94 4.44
462 463 0.462789 CCCAGTCGGTTTATAGCGGT 59.537 55.000 4.97 0.00 44.94 5.68
463 464 0.249741 CCCCAGTCGGTTTATAGCGG 60.250 60.000 4.97 0.00 44.94 5.52
464 465 0.878961 GCCCCAGTCGGTTTATAGCG 60.879 60.000 0.00 0.00 46.15 4.26
465 466 0.534427 GGCCCCAGTCGGTTTATAGC 60.534 60.000 0.00 0.00 0.00 2.97
466 467 1.129058 AGGCCCCAGTCGGTTTATAG 58.871 55.000 0.00 0.00 0.00 1.31
467 468 1.487558 GAAGGCCCCAGTCGGTTTATA 59.512 52.381 0.00 0.00 0.00 0.98
468 469 0.255033 GAAGGCCCCAGTCGGTTTAT 59.745 55.000 0.00 0.00 0.00 1.40
469 470 1.681076 GAAGGCCCCAGTCGGTTTA 59.319 57.895 0.00 0.00 0.00 2.01
470 471 2.434774 GAAGGCCCCAGTCGGTTT 59.565 61.111 0.00 0.00 0.00 3.27
471 472 3.647771 GGAAGGCCCCAGTCGGTT 61.648 66.667 0.00 0.00 0.00 4.44
472 473 4.974438 TGGAAGGCCCCAGTCGGT 62.974 66.667 0.00 0.00 0.00 4.69
473 474 4.101448 CTGGAAGGCCCCAGTCGG 62.101 72.222 17.58 0.00 46.62 4.79
494 495 4.758165 TGGAGAAGTATCCGGTTTTGAAAC 59.242 41.667 0.00 0.00 42.77 2.78
495 496 4.758165 GTGGAGAAGTATCCGGTTTTGAAA 59.242 41.667 0.00 0.00 42.77 2.69
496 497 4.320870 GTGGAGAAGTATCCGGTTTTGAA 58.679 43.478 0.00 0.00 42.77 2.69
497 498 3.615592 CGTGGAGAAGTATCCGGTTTTGA 60.616 47.826 0.00 0.00 42.77 2.69
498 499 2.671396 CGTGGAGAAGTATCCGGTTTTG 59.329 50.000 0.00 0.00 42.77 2.44
499 500 2.933928 GCGTGGAGAAGTATCCGGTTTT 60.934 50.000 0.00 0.00 42.77 2.43
500 501 1.405121 GCGTGGAGAAGTATCCGGTTT 60.405 52.381 0.00 0.00 42.77 3.27
501 502 0.175073 GCGTGGAGAAGTATCCGGTT 59.825 55.000 0.00 0.00 42.77 4.44
502 503 0.968901 TGCGTGGAGAAGTATCCGGT 60.969 55.000 0.00 0.00 42.77 5.28
503 504 0.174845 TTGCGTGGAGAAGTATCCGG 59.825 55.000 0.00 0.00 42.77 5.14
504 505 2.004583 TTTGCGTGGAGAAGTATCCG 57.995 50.000 0.00 0.00 42.77 4.18
505 506 2.614057 CCATTTGCGTGGAGAAGTATCC 59.386 50.000 0.00 0.00 42.02 2.59
506 507 2.614057 CCCATTTGCGTGGAGAAGTATC 59.386 50.000 4.33 0.00 42.02 2.24
507 508 2.643551 CCCATTTGCGTGGAGAAGTAT 58.356 47.619 4.33 0.00 42.02 2.12
508 509 1.948611 GCCCATTTGCGTGGAGAAGTA 60.949 52.381 4.33 0.00 42.02 2.24
509 510 1.244019 GCCCATTTGCGTGGAGAAGT 61.244 55.000 4.33 0.00 42.02 3.01
510 511 1.508088 GCCCATTTGCGTGGAGAAG 59.492 57.895 4.33 0.00 42.02 2.85
511 512 1.976474 GGCCCATTTGCGTGGAGAA 60.976 57.895 0.00 0.00 42.02 2.87
512 513 2.361104 GGCCCATTTGCGTGGAGA 60.361 61.111 0.00 0.00 42.02 3.71
513 514 3.814268 CGGCCCATTTGCGTGGAG 61.814 66.667 0.00 0.00 42.02 3.86
527 528 3.809374 CTAACGAGGATGGCCCGGC 62.809 68.421 0.00 0.00 40.87 6.13
528 529 1.968050 AACTAACGAGGATGGCCCGG 61.968 60.000 0.00 0.00 40.87 5.73
529 530 0.107848 AAACTAACGAGGATGGCCCG 60.108 55.000 0.00 0.00 40.87 6.13
530 531 1.339727 ACAAACTAACGAGGATGGCCC 60.340 52.381 0.00 0.00 33.31 5.80
531 532 2.007608 GACAAACTAACGAGGATGGCC 58.992 52.381 0.00 0.00 0.00 5.36
532 533 2.695359 TGACAAACTAACGAGGATGGC 58.305 47.619 0.00 0.00 0.00 4.40
533 534 8.657074 TTTATATGACAAACTAACGAGGATGG 57.343 34.615 0.00 0.00 0.00 3.51
535 536 8.774586 GCATTTATATGACAAACTAACGAGGAT 58.225 33.333 0.00 0.00 33.37 3.24
536 537 7.042992 CGCATTTATATGACAAACTAACGAGGA 60.043 37.037 0.00 0.00 33.37 3.71
537 538 7.063456 CGCATTTATATGACAAACTAACGAGG 58.937 38.462 0.00 0.00 33.37 4.63
538 539 7.063456 CCGCATTTATATGACAAACTAACGAG 58.937 38.462 0.00 0.00 33.37 4.18
539 540 6.510478 GCCGCATTTATATGACAAACTAACGA 60.510 38.462 0.00 0.00 33.37 3.85
540 541 5.619607 GCCGCATTTATATGACAAACTAACG 59.380 40.000 0.00 0.00 33.37 3.18
541 542 6.491394 TGCCGCATTTATATGACAAACTAAC 58.509 36.000 0.00 0.00 33.37 2.34
542 543 6.685527 TGCCGCATTTATATGACAAACTAA 57.314 33.333 0.00 0.00 33.37 2.24
543 544 6.317642 ACTTGCCGCATTTATATGACAAACTA 59.682 34.615 0.00 0.00 33.37 2.24
544 545 5.125417 ACTTGCCGCATTTATATGACAAACT 59.875 36.000 0.00 0.00 33.37 2.66
545 546 5.339990 ACTTGCCGCATTTATATGACAAAC 58.660 37.500 0.00 0.00 33.37 2.93
546 547 5.574891 ACTTGCCGCATTTATATGACAAA 57.425 34.783 0.00 0.00 33.37 2.83
547 548 5.238432 CCTACTTGCCGCATTTATATGACAA 59.762 40.000 0.00 0.00 33.37 3.18
548 549 4.754618 CCTACTTGCCGCATTTATATGACA 59.245 41.667 0.00 0.00 33.37 3.58
549 550 4.154195 CCCTACTTGCCGCATTTATATGAC 59.846 45.833 0.00 0.00 33.37 3.06
550 551 4.041075 TCCCTACTTGCCGCATTTATATGA 59.959 41.667 0.00 0.00 33.37 2.15
551 552 4.323417 TCCCTACTTGCCGCATTTATATG 58.677 43.478 0.00 0.00 34.76 1.78
552 553 4.634012 TCCCTACTTGCCGCATTTATAT 57.366 40.909 0.00 0.00 0.00 0.86
553 554 4.634012 ATCCCTACTTGCCGCATTTATA 57.366 40.909 0.00 0.00 0.00 0.98
554 555 3.508845 ATCCCTACTTGCCGCATTTAT 57.491 42.857 0.00 0.00 0.00 1.40
555 556 3.290948 AATCCCTACTTGCCGCATTTA 57.709 42.857 0.00 0.00 0.00 1.40
556 557 2.143876 AATCCCTACTTGCCGCATTT 57.856 45.000 0.00 0.00 0.00 2.32
557 558 2.024414 GAAATCCCTACTTGCCGCATT 58.976 47.619 0.00 0.00 0.00 3.56
558 559 1.680338 GAAATCCCTACTTGCCGCAT 58.320 50.000 0.00 0.00 0.00 4.73
559 560 0.393808 GGAAATCCCTACTTGCCGCA 60.394 55.000 0.00 0.00 0.00 5.69
560 561 2.405143 GGAAATCCCTACTTGCCGC 58.595 57.895 0.00 0.00 0.00 6.53
571 572 2.428530 GCAGATTTGTCTGGGGAAATCC 59.571 50.000 7.47 0.00 38.73 3.01
572 573 3.359950 AGCAGATTTGTCTGGGGAAATC 58.640 45.455 7.47 0.00 38.38 2.17
573 574 3.463048 AGCAGATTTGTCTGGGGAAAT 57.537 42.857 7.47 0.00 38.14 2.17
574 575 2.978156 AGCAGATTTGTCTGGGGAAA 57.022 45.000 7.47 0.00 38.14 3.13
575 576 2.642311 TGTAGCAGATTTGTCTGGGGAA 59.358 45.455 7.47 0.00 38.14 3.97
576 577 2.265367 TGTAGCAGATTTGTCTGGGGA 58.735 47.619 7.47 0.00 38.14 4.81
577 578 2.787473 TGTAGCAGATTTGTCTGGGG 57.213 50.000 7.47 0.00 38.14 4.96
578 579 4.572389 GTGTATGTAGCAGATTTGTCTGGG 59.428 45.833 7.47 0.00 38.14 4.45
579 580 5.178061 TGTGTATGTAGCAGATTTGTCTGG 58.822 41.667 7.47 0.00 38.14 3.86
580 581 6.915544 ATGTGTATGTAGCAGATTTGTCTG 57.084 37.500 1.17 1.17 40.51 3.51
581 582 9.265901 GATTATGTGTATGTAGCAGATTTGTCT 57.734 33.333 0.00 0.00 0.00 3.41
582 583 9.265901 AGATTATGTGTATGTAGCAGATTTGTC 57.734 33.333 0.00 0.00 0.00 3.18
583 584 9.618890 AAGATTATGTGTATGTAGCAGATTTGT 57.381 29.630 0.00 0.00 0.00 2.83
587 588 9.486497 CAAGAAGATTATGTGTATGTAGCAGAT 57.514 33.333 0.00 0.00 0.00 2.90
588 589 7.928167 CCAAGAAGATTATGTGTATGTAGCAGA 59.072 37.037 0.00 0.00 0.00 4.26
589 590 7.307632 GCCAAGAAGATTATGTGTATGTAGCAG 60.308 40.741 0.00 0.00 0.00 4.24
590 591 6.483307 GCCAAGAAGATTATGTGTATGTAGCA 59.517 38.462 0.00 0.00 0.00 3.49
591 592 6.073003 GGCCAAGAAGATTATGTGTATGTAGC 60.073 42.308 0.00 0.00 0.00 3.58
592 593 6.428159 GGGCCAAGAAGATTATGTGTATGTAG 59.572 42.308 4.39 0.00 0.00 2.74
593 594 6.126623 TGGGCCAAGAAGATTATGTGTATGTA 60.127 38.462 2.13 0.00 0.00 2.29
594 595 5.133221 GGGCCAAGAAGATTATGTGTATGT 58.867 41.667 4.39 0.00 0.00 2.29
595 596 5.132502 TGGGCCAAGAAGATTATGTGTATG 58.867 41.667 2.13 0.00 0.00 2.39
596 597 5.132648 TCTGGGCCAAGAAGATTATGTGTAT 59.867 40.000 7.63 0.00 0.00 2.29
597 598 4.473196 TCTGGGCCAAGAAGATTATGTGTA 59.527 41.667 7.63 0.00 0.00 2.90
598 599 3.266772 TCTGGGCCAAGAAGATTATGTGT 59.733 43.478 7.63 0.00 0.00 3.72
599 600 3.881688 CTCTGGGCCAAGAAGATTATGTG 59.118 47.826 12.07 0.00 0.00 3.21
600 601 3.686691 GCTCTGGGCCAAGAAGATTATGT 60.687 47.826 12.07 0.00 34.27 2.29
601 602 2.883386 GCTCTGGGCCAAGAAGATTATG 59.117 50.000 12.07 0.00 34.27 1.90
602 603 2.511218 TGCTCTGGGCCAAGAAGATTAT 59.489 45.455 12.07 0.00 40.92 1.28
603 604 1.915489 TGCTCTGGGCCAAGAAGATTA 59.085 47.619 12.07 0.00 40.92 1.75
604 605 0.700564 TGCTCTGGGCCAAGAAGATT 59.299 50.000 12.07 0.00 40.92 2.40
605 606 0.924823 ATGCTCTGGGCCAAGAAGAT 59.075 50.000 12.07 2.90 40.92 2.40
606 607 1.583556 TATGCTCTGGGCCAAGAAGA 58.416 50.000 12.07 0.19 40.92 2.87
607 608 2.653234 ATATGCTCTGGGCCAAGAAG 57.347 50.000 12.07 6.76 40.92 2.85
608 609 7.696618 ATATATATATGCTCTGGGCCAAGAA 57.303 36.000 12.07 3.05 40.92 2.52
609 610 7.455953 CCTATATATATATGCTCTGGGCCAAGA 59.544 40.741 10.21 10.21 40.92 3.02
610 611 7.619050 CCTATATATATATGCTCTGGGCCAAG 58.381 42.308 8.04 1.32 40.92 3.61
611 612 6.013379 GCCTATATATATATGCTCTGGGCCAA 60.013 42.308 17.86 0.00 40.92 4.52
612 613 5.485353 GCCTATATATATATGCTCTGGGCCA 59.515 44.000 17.86 5.85 40.92 5.36
613 614 5.104735 GGCCTATATATATATGCTCTGGGCC 60.105 48.000 21.28 21.28 45.71 5.80
614 615 5.485353 TGGCCTATATATATATGCTCTGGGC 59.515 44.000 21.90 19.31 42.22 5.36
615 616 7.401204 TCATGGCCTATATATATATGCTCTGGG 59.599 40.741 21.90 11.61 32.57 4.45
616 617 8.371571 TCATGGCCTATATATATATGCTCTGG 57.628 38.462 21.90 12.15 32.57 3.86
617 618 9.872721 CTTCATGGCCTATATATATATGCTCTG 57.127 37.037 21.90 19.04 32.57 3.35
618 619 9.834678 TCTTCATGGCCTATATATATATGCTCT 57.165 33.333 21.90 11.72 32.57 4.09
625 626 7.987458 CCGTTGTTCTTCATGGCCTATATATAT 59.013 37.037 3.32 0.00 0.00 0.86
626 627 7.179516 TCCGTTGTTCTTCATGGCCTATATATA 59.820 37.037 3.32 0.00 0.00 0.86
627 628 6.013725 TCCGTTGTTCTTCATGGCCTATATAT 60.014 38.462 3.32 0.00 0.00 0.86
628 629 5.305902 TCCGTTGTTCTTCATGGCCTATATA 59.694 40.000 3.32 0.00 0.00 0.86
629 630 4.102524 TCCGTTGTTCTTCATGGCCTATAT 59.897 41.667 3.32 0.00 0.00 0.86
630 631 3.452990 TCCGTTGTTCTTCATGGCCTATA 59.547 43.478 3.32 0.00 0.00 1.31
631 632 2.238646 TCCGTTGTTCTTCATGGCCTAT 59.761 45.455 3.32 0.00 0.00 2.57
632 633 1.626321 TCCGTTGTTCTTCATGGCCTA 59.374 47.619 3.32 0.00 0.00 3.93
633 634 0.400213 TCCGTTGTTCTTCATGGCCT 59.600 50.000 3.32 0.00 0.00 5.19
634 635 0.804989 CTCCGTTGTTCTTCATGGCC 59.195 55.000 0.00 0.00 0.00 5.36
635 636 1.734465 CTCTCCGTTGTTCTTCATGGC 59.266 52.381 0.00 0.00 0.00 4.40
636 637 3.319137 TCTCTCCGTTGTTCTTCATGG 57.681 47.619 0.00 0.00 0.00 3.66
637 638 5.673337 TTTTCTCTCCGTTGTTCTTCATG 57.327 39.130 0.00 0.00 0.00 3.07
638 639 7.979444 TTATTTTCTCTCCGTTGTTCTTCAT 57.021 32.000 0.00 0.00 0.00 2.57
639 640 7.795482 TTTATTTTCTCTCCGTTGTTCTTCA 57.205 32.000 0.00 0.00 0.00 3.02
640 641 9.756461 GTATTTATTTTCTCTCCGTTGTTCTTC 57.244 33.333 0.00 0.00 0.00 2.87
641 642 9.503399 AGTATTTATTTTCTCTCCGTTGTTCTT 57.497 29.630 0.00 0.00 0.00 2.52
644 645 9.159364 GGTAGTATTTATTTTCTCTCCGTTGTT 57.841 33.333 0.00 0.00 0.00 2.83
645 646 8.316214 TGGTAGTATTTATTTTCTCTCCGTTGT 58.684 33.333 0.00 0.00 0.00 3.32
646 647 8.712285 TGGTAGTATTTATTTTCTCTCCGTTG 57.288 34.615 0.00 0.00 0.00 4.10
647 648 9.729281 TTTGGTAGTATTTATTTTCTCTCCGTT 57.271 29.630 0.00 0.00 0.00 4.44
648 649 9.729281 TTTTGGTAGTATTTATTTTCTCTCCGT 57.271 29.630 0.00 0.00 0.00 4.69
649 650 9.983804 GTTTTGGTAGTATTTATTTTCTCTCCG 57.016 33.333 0.00 0.00 0.00 4.63
759 772 6.712095 TGAGAAACAATTGTAGCTCAATCAGT 59.288 34.615 27.59 3.65 44.85 3.41
760 773 7.118825 TCTGAGAAACAATTGTAGCTCAATCAG 59.881 37.037 28.52 23.30 44.85 2.90
836 858 8.956426 TCAATTAGCGTATCCTCAAAGATTTTT 58.044 29.630 0.00 0.00 0.00 1.94
868 890 2.271800 CGATTGGAGGAGAGTTTTCCG 58.728 52.381 0.00 0.00 42.29 4.30
869 891 2.633488 CCGATTGGAGGAGAGTTTTCC 58.367 52.381 0.00 0.00 37.49 3.13
871 893 1.351017 TGCCGATTGGAGGAGAGTTTT 59.649 47.619 1.98 0.00 37.49 2.43
872 894 0.984230 TGCCGATTGGAGGAGAGTTT 59.016 50.000 1.98 0.00 37.49 2.66
873 895 1.134280 CATGCCGATTGGAGGAGAGTT 60.134 52.381 1.98 0.00 37.49 3.01
918 1056 5.120830 GCCATGTATTTATAGGCAGAAGACG 59.879 44.000 0.00 0.00 44.59 4.18
923 1061 4.526650 TCTCGCCATGTATTTATAGGCAGA 59.473 41.667 0.00 0.00 45.47 4.26
957 1096 1.668419 TACTCCGGGTACGTTAGAGC 58.332 55.000 0.00 0.00 38.78 4.09
962 1101 1.463674 ACGATTACTCCGGGTACGTT 58.536 50.000 0.00 0.00 38.78 3.99
1148 1295 6.030849 GGTCGATCTGCATGTGACTATATAC 58.969 44.000 0.00 0.00 0.00 1.47
1150 1297 4.769488 AGGTCGATCTGCATGTGACTATAT 59.231 41.667 0.00 0.00 0.00 0.86
1151 1298 4.145052 AGGTCGATCTGCATGTGACTATA 58.855 43.478 0.00 0.00 0.00 1.31
1152 1299 2.961741 AGGTCGATCTGCATGTGACTAT 59.038 45.455 0.00 0.00 0.00 2.12
1155 1302 1.565305 GAGGTCGATCTGCATGTGAC 58.435 55.000 0.91 0.00 0.00 3.67
1156 1303 0.461548 GGAGGTCGATCTGCATGTGA 59.538 55.000 12.89 0.00 0.00 3.58
1157 1304 0.176449 TGGAGGTCGATCTGCATGTG 59.824 55.000 16.71 0.00 30.16 3.21
1158 1305 1.126488 ATGGAGGTCGATCTGCATGT 58.874 50.000 29.22 9.69 42.78 3.21
1160 1307 1.417288 TCATGGAGGTCGATCTGCAT 58.583 50.000 25.23 25.23 44.75 3.96
1162 1309 1.342496 TCATCATGGAGGTCGATCTGC 59.658 52.381 10.72 10.72 0.00 4.26
1163 1310 2.889678 TCTCATCATGGAGGTCGATCTG 59.110 50.000 0.91 0.00 35.58 2.90
1165 1312 2.890311 ACTCTCATCATGGAGGTCGATC 59.110 50.000 7.73 0.00 35.58 3.69
1167 1314 2.027385 CACTCTCATCATGGAGGTCGA 58.973 52.381 7.73 0.00 35.58 4.20
1168 1315 1.537776 GCACTCTCATCATGGAGGTCG 60.538 57.143 7.73 0.00 35.58 4.79
1607 1813 3.067601 TGTGTGCGCTAGCTAGCTATTTA 59.932 43.478 36.02 19.49 46.85 1.40
1608 1814 2.159099 TGTGTGCGCTAGCTAGCTATTT 60.159 45.455 36.02 1.80 46.85 1.40
1609 1815 1.409064 TGTGTGCGCTAGCTAGCTATT 59.591 47.619 36.02 2.20 46.85 1.73
1610 1816 1.032794 TGTGTGCGCTAGCTAGCTAT 58.967 50.000 36.02 3.01 46.85 2.97
1611 1817 0.100682 GTGTGTGCGCTAGCTAGCTA 59.899 55.000 36.02 24.83 46.85 3.32
1612 1818 1.153745 GTGTGTGCGCTAGCTAGCT 60.154 57.895 36.02 23.12 46.85 3.32
1613 1819 0.737715 AAGTGTGTGCGCTAGCTAGC 60.738 55.000 31.88 31.88 45.42 3.42
1614 1820 2.561733 TAAGTGTGTGCGCTAGCTAG 57.438 50.000 16.84 16.84 45.42 3.42
1615 1821 2.809446 CATAAGTGTGTGCGCTAGCTA 58.191 47.619 13.93 0.00 45.42 3.32
1679 1931 1.374252 GACCCTGCGAGCGAAGAAA 60.374 57.895 0.00 0.00 0.00 2.52
1950 2210 1.378882 CCAGTGGGGATGACATTGCG 61.379 60.000 0.00 0.00 40.01 4.85
2011 2271 0.810031 CCACGGACGGATCAATCACC 60.810 60.000 0.00 0.00 0.00 4.02
2042 2302 3.547601 GCACAACTAATTAACGTGCGTT 58.452 40.909 14.41 14.41 42.97 4.84
2170 2434 5.509716 CAGATCAGCTGCCAAATTATTCA 57.490 39.130 9.47 0.00 37.90 2.57
2210 2474 4.712829 TCCATCGTATCCTTGGAGTACAAA 59.287 41.667 0.00 0.00 38.91 2.83
2211 2475 4.283337 TCCATCGTATCCTTGGAGTACAA 58.717 43.478 0.00 0.00 34.65 2.41
2213 2477 6.777213 ATATCCATCGTATCCTTGGAGTAC 57.223 41.667 0.00 0.00 42.53 2.73
2215 2479 5.569630 GCAATATCCATCGTATCCTTGGAGT 60.570 44.000 0.00 0.00 42.53 3.85
2216 2480 4.872691 GCAATATCCATCGTATCCTTGGAG 59.127 45.833 0.00 0.00 42.53 3.86
2218 2482 4.836825 AGCAATATCCATCGTATCCTTGG 58.163 43.478 0.00 0.00 0.00 3.61
2286 3462 8.086522 TGTAGTAGTAGTCAAGATTTCCAACAC 58.913 37.037 0.00 0.00 0.00 3.32
2334 3517 7.614192 ACGGACAATTCTTGAAACCCTAAATAT 59.386 33.333 0.00 0.00 0.00 1.28
2335 3518 6.943718 ACGGACAATTCTTGAAACCCTAAATA 59.056 34.615 0.00 0.00 0.00 1.40
2336 3519 5.773176 ACGGACAATTCTTGAAACCCTAAAT 59.227 36.000 0.00 0.00 0.00 1.40
2337 3520 5.009210 CACGGACAATTCTTGAAACCCTAAA 59.991 40.000 0.00 0.00 0.00 1.85
2343 3526 8.742554 ATTTATTCACGGACAATTCTTGAAAC 57.257 30.769 0.00 0.00 31.51 2.78
2354 3537 7.227711 TGTTCTCTGAAAATTTATTCACGGACA 59.772 33.333 0.00 0.00 35.55 4.02
2427 4346 5.898630 TTTTTCCGCTTTTGCTATTTGTC 57.101 34.783 0.00 0.00 44.80 3.18
2508 4427 6.263842 TCAGGCCATAATCTAAAGCAAATCAG 59.736 38.462 5.01 0.00 0.00 2.90
2630 4553 7.870445 TGAAACAAGACATACCAAATTTTAGGC 59.130 33.333 0.00 0.00 0.00 3.93
2771 4730 7.173907 GCAGCACCTCATTTATTATGATACACT 59.826 37.037 0.00 0.00 0.00 3.55
2847 4829 9.804758 GATAGTACCTTCATAGTGCATATTACC 57.195 37.037 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.