Multiple sequence alignment - TraesCS2D01G077400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G077400 chr2D 100.000 3235 0 0 1 3235 32993865 32990631 0.000000e+00 5975.0
1 TraesCS2D01G077400 chr2D 85.976 984 71 22 2251 3183 33163795 33162828 0.000000e+00 990.0
2 TraesCS2D01G077400 chr2D 84.367 774 75 13 2428 3183 33047234 33046489 0.000000e+00 717.0
3 TraesCS2D01G077400 chr2D 86.341 593 62 10 1006 1585 33315387 33314801 2.120000e-176 628.0
4 TraesCS2D01G077400 chr2D 85.953 598 52 14 1024 1590 33165285 33164689 7.670000e-171 610.0
5 TraesCS2D01G077400 chr2D 84.500 600 66 11 1009 1585 79085034 79085629 4.680000e-158 568.0
6 TraesCS2D01G077400 chr2D 84.801 579 64 12 1022 1585 33374157 33373588 7.840000e-156 560.0
7 TraesCS2D01G077400 chr2D 89.406 387 35 3 1210 1590 33049296 33048910 1.750000e-132 483.0
8 TraesCS2D01G077400 chr2D 84.814 349 33 11 1685 2028 33048636 33048303 1.860000e-87 333.0
9 TraesCS2D01G077400 chr2D 86.842 304 28 3 1739 2036 33580389 33580092 2.410000e-86 329.0
10 TraesCS2D01G077400 chr2D 83.565 359 38 10 1689 2041 33164316 33163973 1.870000e-82 316.0
11 TraesCS2D01G077400 chr2D 83.680 337 31 8 923 1237 33049702 33049368 2.440000e-76 296.0
12 TraesCS2D01G077400 chr2D 80.000 435 32 14 2218 2611 33047806 33047386 1.480000e-68 270.0
13 TraesCS2D01G077400 chr2D 83.067 313 37 6 1739 2041 33314578 33314272 1.480000e-68 270.0
14 TraesCS2D01G077400 chr2D 85.849 212 27 3 635 844 596664253 596664463 4.200000e-54 222.0
15 TraesCS2D01G077400 chr2D 81.068 206 37 2 635 840 28890357 28890154 2.580000e-36 163.0
16 TraesCS2D01G077400 chr2D 84.516 155 15 7 2167 2321 33579983 33579838 9.350000e-31 145.0
17 TraesCS2D01G077400 chr2D 90.244 82 1 2 932 1006 33165417 33165336 2.050000e-17 100.0
18 TraesCS2D01G077400 chr2D 97.436 39 0 1 1588 1625 33164673 33164635 7.490000e-07 65.8
19 TraesCS2D01G077400 chr2D 97.143 35 1 0 1678 1712 33048821 33048787 3.490000e-05 60.2
20 TraesCS2D01G077400 chr2B 90.952 1271 36 14 852 2052 54787524 54786263 0.000000e+00 1637.0
21 TraesCS2D01G077400 chr2B 91.105 1023 50 6 2208 3222 54785988 54784999 0.000000e+00 1347.0
22 TraesCS2D01G077400 chr2B 85.961 812 76 20 2395 3177 55031031 55030229 0.000000e+00 833.0
23 TraesCS2D01G077400 chr2B 83.246 764 80 18 2430 3163 54885800 54885055 0.000000e+00 658.0
24 TraesCS2D01G077400 chr2B 84.709 654 56 18 962 1590 55210317 55209683 5.930000e-172 614.0
25 TraesCS2D01G077400 chr2B 88.114 387 40 3 1210 1590 54887924 54887538 3.800000e-124 455.0
26 TraesCS2D01G077400 chr2B 88.251 383 39 2 1214 1590 55032466 55032084 1.370000e-123 453.0
27 TraesCS2D01G077400 chr2B 79.849 531 75 15 2487 2988 55226041 55225514 3.070000e-95 359.0
28 TraesCS2D01G077400 chr2B 80.335 478 68 11 2491 2944 55224725 55224250 4.000000e-89 339.0
29 TraesCS2D01G077400 chr2B 85.538 325 32 5 932 1241 55032799 55032475 3.110000e-85 326.0
30 TraesCS2D01G077400 chr2B 84.036 332 38 8 1689 2020 54887234 54886918 4.050000e-79 305.0
31 TraesCS2D01G077400 chr2B 85.274 292 31 3 1739 2024 55855106 55854821 1.140000e-74 291.0
32 TraesCS2D01G077400 chr2B 83.383 337 30 9 923 1241 54888320 54887992 4.080000e-74 289.0
33 TraesCS2D01G077400 chr2B 84.536 291 33 4 1739 2023 55226779 55226495 8.840000e-71 278.0
34 TraesCS2D01G077400 chr2B 97.674 129 2 1 2080 2207 54786192 54786064 1.510000e-53 220.0
35 TraesCS2D01G077400 chr2B 85.714 168 19 5 2245 2412 122993979 122994141 4.290000e-39 172.0
36 TraesCS2D01G077400 chr2B 97.143 35 1 0 1678 1712 54887469 54887435 3.490000e-05 60.2
37 TraesCS2D01G077400 chr2A 95.106 940 29 6 2287 3223 36189405 36188480 0.000000e+00 1465.0
38 TraesCS2D01G077400 chr2A 88.021 935 28 22 843 1734 36190806 36189913 0.000000e+00 1029.0
39 TraesCS2D01G077400 chr2A 91.956 634 40 7 1 625 40485208 40485839 0.000000e+00 878.0
40 TraesCS2D01G077400 chr2A 84.103 975 81 35 2249 3203 36234141 36233221 0.000000e+00 874.0
41 TraesCS2D01G077400 chr2A 86.126 728 75 11 2428 3137 36200613 36199894 0.000000e+00 761.0
42 TraesCS2D01G077400 chr2A 85.621 765 61 15 909 1625 36235710 36234947 0.000000e+00 758.0
43 TraesCS2D01G077400 chr2A 85.497 593 72 5 1008 1589 79342463 79343052 9.930000e-170 606.0
44 TraesCS2D01G077400 chr2A 95.000 300 9 1 1786 2085 36189901 36189608 1.760000e-127 466.0
45 TraesCS2D01G077400 chr2A 88.372 387 39 2 1210 1590 36202791 36202405 8.180000e-126 460.0
46 TraesCS2D01G077400 chr2A 84.393 346 35 10 1692 2033 36202159 36201829 4.030000e-84 322.0
47 TraesCS2D01G077400 chr2A 85.016 307 33 4 1737 2036 36411061 36410761 1.890000e-77 300.0
48 TraesCS2D01G077400 chr2A 82.584 356 31 13 913 1237 36203236 36202881 5.280000e-73 285.0
49 TraesCS2D01G077400 chr2A 89.119 193 19 2 2419 2611 36200956 36200766 4.170000e-59 239.0
50 TraesCS2D01G077400 chr2A 93.919 148 5 2 2080 2226 36189553 36189409 1.510000e-53 220.0
51 TraesCS2D01G077400 chr2A 90.604 149 13 1 2243 2390 1212236 1212384 2.550000e-46 196.0
52 TraesCS2D01G077400 chr2A 88.435 147 15 2 2245 2390 79344089 79344234 3.320000e-40 176.0
53 TraesCS2D01G077400 chr2A 94.505 91 5 0 3132 3222 36198635 36198545 1.210000e-29 141.0
54 TraesCS2D01G077400 chr2A 78.404 213 40 5 633 844 672533519 672533726 2.020000e-27 134.0
55 TraesCS2D01G077400 chr2A 94.444 54 2 1 852 905 36203263 36203211 7.440000e-12 82.4
56 TraesCS2D01G077400 chr2A 97.143 35 1 0 1678 1712 36202353 36202319 3.490000e-05 60.2
57 TraesCS2D01G077400 chr2A 97.143 35 0 1 2144 2178 373454441 373454408 1.250000e-04 58.4
58 TraesCS2D01G077400 chr1D 93.131 626 28 7 1 621 356283206 356283821 0.000000e+00 904.0
59 TraesCS2D01G077400 chr1D 82.000 300 43 6 329 621 444879960 444880255 8.970000e-61 244.0
60 TraesCS2D01G077400 chr6A 88.376 628 60 11 1 621 605477511 605476890 0.000000e+00 743.0
61 TraesCS2D01G077400 chr6A 83.721 86 8 1 2174 2259 130730230 130730151 3.460000e-10 76.8
62 TraesCS2D01G077400 chr7D 85.828 628 77 10 1 621 497929892 497930514 0.000000e+00 656.0
63 TraesCS2D01G077400 chr7D 90.604 149 12 2 2243 2390 239730507 239730360 2.550000e-46 196.0
64 TraesCS2D01G077400 chr7D 79.605 152 10 7 2378 2509 190391661 190391511 4.450000e-14 89.8
65 TraesCS2D01G077400 chr7D 97.143 35 0 1 2144 2178 481607481 481607514 1.250000e-04 58.4
66 TraesCS2D01G077400 chr4B 88.515 505 48 9 130 625 284092016 284091513 1.280000e-168 603.0
67 TraesCS2D01G077400 chr4B 91.630 227 14 4 1 224 27865309 27865085 3.130000e-80 309.0
68 TraesCS2D01G077400 chr4B 81.517 211 36 3 635 844 579466272 579466480 1.540000e-38 171.0
69 TraesCS2D01G077400 chr3A 85.612 556 65 10 76 621 739148751 739149301 1.300000e-158 569.0
70 TraesCS2D01G077400 chr3A 79.817 218 34 5 634 844 96689331 96689545 2.010000e-32 150.0
71 TraesCS2D01G077400 chr3A 84.884 86 7 3 2174 2259 496377020 496376941 7.440000e-12 82.4
72 TraesCS2D01G077400 chr3A 89.286 56 5 1 2378 2433 496376746 496376692 5.790000e-08 69.4
73 TraesCS2D01G077400 chr1A 82.588 626 81 20 1 624 498586136 498585537 7.950000e-146 527.0
74 TraesCS2D01G077400 chr5A 88.279 401 41 5 1 400 412512745 412513140 2.920000e-130 475.0
75 TraesCS2D01G077400 chr5A 90.972 144 12 1 2248 2390 565537168 565537025 3.290000e-45 193.0
76 TraesCS2D01G077400 chr3B 88.438 320 24 5 2904 3223 229463991 229464297 1.100000e-99 374.0
77 TraesCS2D01G077400 chr3B 86.319 307 28 6 2582 2876 229463691 229463995 4.030000e-84 322.0
78 TraesCS2D01G077400 chr6D 80.420 286 51 5 336 621 6272587 6272867 2.530000e-51 213.0
79 TraesCS2D01G077400 chr6D 97.143 35 0 1 2144 2178 448378058 448378025 1.250000e-04 58.4
80 TraesCS2D01G077400 chr5D 84.951 206 24 6 633 835 565788574 565788775 5.470000e-48 202.0
81 TraesCS2D01G077400 chr5D 82.629 213 30 6 635 844 548307674 548307466 7.130000e-42 182.0
82 TraesCS2D01G077400 chr5D 83.158 95 10 1 2165 2259 197752267 197752355 7.440000e-12 82.4
83 TraesCS2D01G077400 chr5D 93.617 47 2 1 2378 2424 197752550 197752595 5.790000e-08 69.4
84 TraesCS2D01G077400 chr7B 82.251 231 28 9 625 844 739347021 739347249 1.530000e-43 187.0
85 TraesCS2D01G077400 chr7B 81.991 211 30 5 638 844 598005074 598004868 4.290000e-39 172.0
86 TraesCS2D01G077400 chr3D 78.505 321 22 17 2280 2556 551677428 551677111 2.000000e-37 167.0
87 TraesCS2D01G077400 chr7A 83.582 134 14 3 3035 3161 649475316 649475448 5.670000e-23 119.0
88 TraesCS2D01G077400 chr4A 82.105 95 11 1 2165 2259 28904001 28904089 3.460000e-10 76.8
89 TraesCS2D01G077400 chr4A 82.105 95 11 1 2165 2259 107756998 107757086 3.460000e-10 76.8
90 TraesCS2D01G077400 chr4A 83.721 86 8 1 2174 2259 229013921 229013842 3.460000e-10 76.8
91 TraesCS2D01G077400 chr4A 93.617 47 2 1 2378 2424 444118411 444118366 5.790000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G077400 chr2D 32990631 32993865 3234 True 5975.000000 5975 100.000000 1 3235 1 chr2D.!!$R2 3234
1 TraesCS2D01G077400 chr2D 79085034 79085629 595 False 568.000000 568 84.500000 1009 1585 1 chr2D.!!$F1 576
2 TraesCS2D01G077400 chr2D 33373588 33374157 569 True 560.000000 560 84.801000 1022 1585 1 chr2D.!!$R3 563
3 TraesCS2D01G077400 chr2D 33314272 33315387 1115 True 449.000000 628 84.704000 1006 2041 2 chr2D.!!$R6 1035
4 TraesCS2D01G077400 chr2D 33162828 33165417 2589 True 416.360000 990 88.634800 932 3183 5 chr2D.!!$R5 2251
5 TraesCS2D01G077400 chr2D 33046489 33049702 3213 True 359.866667 717 86.568333 923 3183 6 chr2D.!!$R4 2260
6 TraesCS2D01G077400 chr2D 33579838 33580389 551 True 237.000000 329 85.679000 1739 2321 2 chr2D.!!$R7 582
7 TraesCS2D01G077400 chr2B 54784999 54787524 2525 True 1068.000000 1637 93.243667 852 3222 3 chr2B.!!$R3 2370
8 TraesCS2D01G077400 chr2B 55209683 55210317 634 True 614.000000 614 84.709000 962 1590 1 chr2B.!!$R1 628
9 TraesCS2D01G077400 chr2B 55030229 55032799 2570 True 537.333333 833 86.583333 932 3177 3 chr2B.!!$R5 2245
10 TraesCS2D01G077400 chr2B 54885055 54888320 3265 True 353.440000 658 87.184400 923 3163 5 chr2B.!!$R4 2240
11 TraesCS2D01G077400 chr2B 55224250 55226779 2529 True 325.333333 359 81.573333 1739 2988 3 chr2B.!!$R6 1249
12 TraesCS2D01G077400 chr2A 40485208 40485839 631 False 878.000000 878 91.956000 1 625 1 chr2A.!!$F2 624
13 TraesCS2D01G077400 chr2A 36233221 36235710 2489 True 816.000000 874 84.862000 909 3203 2 chr2A.!!$R5 2294
14 TraesCS2D01G077400 chr2A 36188480 36190806 2326 True 795.000000 1465 93.011500 843 3223 4 chr2A.!!$R3 2380
15 TraesCS2D01G077400 chr2A 79342463 79344234 1771 False 391.000000 606 86.966000 1008 2390 2 chr2A.!!$F4 1382
16 TraesCS2D01G077400 chr2A 36198545 36203263 4718 True 293.825000 761 89.585750 852 3222 8 chr2A.!!$R4 2370
17 TraesCS2D01G077400 chr1D 356283206 356283821 615 False 904.000000 904 93.131000 1 621 1 chr1D.!!$F1 620
18 TraesCS2D01G077400 chr6A 605476890 605477511 621 True 743.000000 743 88.376000 1 621 1 chr6A.!!$R2 620
19 TraesCS2D01G077400 chr7D 497929892 497930514 622 False 656.000000 656 85.828000 1 621 1 chr7D.!!$F2 620
20 TraesCS2D01G077400 chr4B 284091513 284092016 503 True 603.000000 603 88.515000 130 625 1 chr4B.!!$R2 495
21 TraesCS2D01G077400 chr3A 739148751 739149301 550 False 569.000000 569 85.612000 76 621 1 chr3A.!!$F2 545
22 TraesCS2D01G077400 chr1A 498585537 498586136 599 True 527.000000 527 82.588000 1 624 1 chr1A.!!$R1 623
23 TraesCS2D01G077400 chr3B 229463691 229464297 606 False 348.000000 374 87.378500 2582 3223 2 chr3B.!!$F1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
598 626 0.110147 GATACGAGCGACTCATCCGG 60.110 60.0 0.00 0.0 0.00 5.14 F
731 759 0.232816 GCAGAAAACGCGTACGGAAA 59.767 50.0 14.46 0.0 46.04 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 2760 0.116143 AAGAGAGGCTCTCACCAGGT 59.884 55.0 38.07 19.38 45.73 4.00 R
2274 3696 2.996249 TCATCACCATCTTCTCTGCC 57.004 50.0 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
379 400 4.332268 TGTGGAAAGATTTTTGCAACAAGC 59.668 37.500 5.46 5.46 44.62 4.01
521 548 6.383415 TGTTACAAAAGTTGTTGAACTGTCC 58.617 36.000 0.00 0.00 41.87 4.02
535 562 0.457337 CTGTCCCACGTAGCGTTACC 60.457 60.000 3.68 0.00 38.32 2.85
598 626 0.110147 GATACGAGCGACTCATCCGG 60.110 60.000 0.00 0.00 0.00 5.14
625 653 4.216708 TGGAAGGTAACGTTTCCCAAATT 58.783 39.130 19.13 7.95 41.75 1.82
626 654 4.038162 TGGAAGGTAACGTTTCCCAAATTG 59.962 41.667 19.13 0.00 41.75 2.32
627 655 4.038282 GGAAGGTAACGTTTCCCAAATTGT 59.962 41.667 19.13 0.00 46.39 2.71
628 656 5.452216 GGAAGGTAACGTTTCCCAAATTGTT 60.452 40.000 19.13 6.24 46.39 2.83
629 657 5.601583 AGGTAACGTTTCCCAAATTGTTT 57.398 34.783 19.13 0.00 46.39 2.83
630 658 5.979993 AGGTAACGTTTCCCAAATTGTTTT 58.020 33.333 19.13 0.00 46.39 2.43
631 659 6.044046 AGGTAACGTTTCCCAAATTGTTTTC 58.956 36.000 19.13 0.00 46.39 2.29
632 660 6.044046 GGTAACGTTTCCCAAATTGTTTTCT 58.956 36.000 12.62 0.00 0.00 2.52
633 661 6.535865 GGTAACGTTTCCCAAATTGTTTTCTT 59.464 34.615 12.62 0.00 0.00 2.52
634 662 7.064847 GGTAACGTTTCCCAAATTGTTTTCTTT 59.935 33.333 12.62 0.00 0.00 2.52
635 663 7.441890 AACGTTTCCCAAATTGTTTTCTTTT 57.558 28.000 0.00 0.00 0.00 2.27
636 664 7.441890 ACGTTTCCCAAATTGTTTTCTTTTT 57.558 28.000 0.00 0.00 0.00 1.94
663 691 7.486802 TTGTTCTAAAAGTTAAGGAAGACCG 57.513 36.000 0.00 0.00 41.83 4.79
664 692 5.993441 TGTTCTAAAAGTTAAGGAAGACCGG 59.007 40.000 0.00 0.00 41.83 5.28
665 693 5.813513 TCTAAAAGTTAAGGAAGACCGGT 57.186 39.130 6.92 6.92 41.83 5.28
666 694 5.544650 TCTAAAAGTTAAGGAAGACCGGTG 58.455 41.667 14.63 0.00 41.83 4.94
667 695 4.426736 AAAAGTTAAGGAAGACCGGTGA 57.573 40.909 14.63 0.00 41.83 4.02
668 696 4.426736 AAAGTTAAGGAAGACCGGTGAA 57.573 40.909 14.63 0.00 41.83 3.18
669 697 4.426736 AAGTTAAGGAAGACCGGTGAAA 57.573 40.909 14.63 0.00 41.83 2.69
670 698 4.426736 AGTTAAGGAAGACCGGTGAAAA 57.573 40.909 14.63 0.00 41.83 2.29
671 699 4.784177 AGTTAAGGAAGACCGGTGAAAAA 58.216 39.130 14.63 0.00 41.83 1.94
672 700 5.382616 AGTTAAGGAAGACCGGTGAAAAAT 58.617 37.500 14.63 0.00 41.83 1.82
673 701 5.472478 AGTTAAGGAAGACCGGTGAAAAATC 59.528 40.000 14.63 0.00 41.83 2.17
674 702 2.423577 AGGAAGACCGGTGAAAAATCG 58.576 47.619 14.63 0.00 41.83 3.34
675 703 2.038033 AGGAAGACCGGTGAAAAATCGA 59.962 45.455 14.63 0.00 41.83 3.59
676 704 2.809696 GGAAGACCGGTGAAAAATCGAA 59.190 45.455 14.63 0.00 0.00 3.71
677 705 3.251487 GGAAGACCGGTGAAAAATCGAAA 59.749 43.478 14.63 0.00 0.00 3.46
678 706 4.082949 GGAAGACCGGTGAAAAATCGAAAT 60.083 41.667 14.63 0.00 0.00 2.17
679 707 4.419522 AGACCGGTGAAAAATCGAAATG 57.580 40.909 14.63 0.00 0.00 2.32
680 708 3.818773 AGACCGGTGAAAAATCGAAATGT 59.181 39.130 14.63 0.00 0.00 2.71
681 709 4.083484 AGACCGGTGAAAAATCGAAATGTC 60.083 41.667 14.63 0.00 0.00 3.06
682 710 3.566322 ACCGGTGAAAAATCGAAATGTCA 59.434 39.130 6.12 0.00 0.00 3.58
683 711 4.036971 ACCGGTGAAAAATCGAAATGTCAA 59.963 37.500 6.12 0.00 0.00 3.18
684 712 4.979197 CCGGTGAAAAATCGAAATGTCAAA 59.021 37.500 0.00 0.00 0.00 2.69
685 713 5.460419 CCGGTGAAAAATCGAAATGTCAAAA 59.540 36.000 0.00 0.00 0.00 2.44
686 714 6.019479 CCGGTGAAAAATCGAAATGTCAAAAA 60.019 34.615 0.00 0.00 0.00 1.94
687 715 7.056800 CGGTGAAAAATCGAAATGTCAAAAAG 58.943 34.615 0.00 0.00 0.00 2.27
688 716 7.043722 CGGTGAAAAATCGAAATGTCAAAAAGA 60.044 33.333 0.00 0.00 0.00 2.52
722 750 8.429739 AAAAACTTTTAAAAAGCAGAAAACGC 57.570 26.923 1.66 0.00 0.00 4.84
723 751 5.369947 ACTTTTAAAAAGCAGAAAACGCG 57.630 34.783 3.53 3.53 0.00 6.01
724 752 4.860352 ACTTTTAAAAAGCAGAAAACGCGT 59.140 33.333 5.58 5.58 0.00 6.01
725 753 6.028987 ACTTTTAAAAAGCAGAAAACGCGTA 58.971 32.000 14.46 0.00 0.00 4.42
726 754 5.853175 TTTAAAAAGCAGAAAACGCGTAC 57.147 34.783 14.46 7.60 0.00 3.67
728 756 0.233848 AAAGCAGAAAACGCGTACGG 59.766 50.000 14.46 9.42 46.04 4.02
729 757 0.598158 AAGCAGAAAACGCGTACGGA 60.598 50.000 14.46 0.00 46.04 4.69
730 758 0.598158 AGCAGAAAACGCGTACGGAA 60.598 50.000 14.46 0.00 46.04 4.30
731 759 0.232816 GCAGAAAACGCGTACGGAAA 59.767 50.000 14.46 0.00 46.04 3.13
732 760 1.333081 GCAGAAAACGCGTACGGAAAA 60.333 47.619 14.46 0.00 46.04 2.29
733 761 2.850254 GCAGAAAACGCGTACGGAAAAA 60.850 45.455 14.46 0.00 46.04 1.94
734 762 3.547601 CAGAAAACGCGTACGGAAAAAT 58.452 40.909 14.46 0.00 46.04 1.82
735 763 4.700332 CAGAAAACGCGTACGGAAAAATA 58.300 39.130 14.46 0.00 46.04 1.40
736 764 5.138788 CAGAAAACGCGTACGGAAAAATAA 58.861 37.500 14.46 0.00 46.04 1.40
737 765 5.620417 CAGAAAACGCGTACGGAAAAATAAA 59.380 36.000 14.46 0.00 46.04 1.40
738 766 6.140422 CAGAAAACGCGTACGGAAAAATAAAA 59.860 34.615 14.46 0.00 46.04 1.52
739 767 6.690528 AGAAAACGCGTACGGAAAAATAAAAA 59.309 30.769 14.46 0.00 46.04 1.94
798 826 4.322385 GCCGAAAACGCGCCAAGT 62.322 61.111 5.73 0.00 0.00 3.16
799 827 2.426752 CCGAAAACGCGCCAAGTG 60.427 61.111 5.73 0.00 0.00 3.16
800 828 2.426752 CGAAAACGCGCCAAGTGG 60.427 61.111 5.73 0.00 38.53 4.00
810 838 4.701663 CCAAGTGGCACTGATCGT 57.298 55.556 22.83 1.09 0.00 3.73
811 839 2.932663 CCAAGTGGCACTGATCGTT 58.067 52.632 22.83 0.21 0.00 3.85
812 840 0.518636 CCAAGTGGCACTGATCGTTG 59.481 55.000 22.83 14.11 0.00 4.10
813 841 1.229428 CAAGTGGCACTGATCGTTGT 58.771 50.000 22.83 0.00 0.00 3.32
814 842 1.069703 CAAGTGGCACTGATCGTTGTG 60.070 52.381 22.83 9.15 37.26 3.33
815 843 0.392706 AGTGGCACTGATCGTTGTGA 59.607 50.000 21.37 0.00 36.38 3.58
816 844 0.792640 GTGGCACTGATCGTTGTGAG 59.207 55.000 11.13 0.00 36.38 3.51
817 845 0.950555 TGGCACTGATCGTTGTGAGC 60.951 55.000 14.70 3.89 36.38 4.26
818 846 1.639298 GGCACTGATCGTTGTGAGCC 61.639 60.000 14.70 8.24 36.38 4.70
819 847 0.671781 GCACTGATCGTTGTGAGCCT 60.672 55.000 14.70 0.00 36.38 4.58
820 848 1.354040 CACTGATCGTTGTGAGCCTC 58.646 55.000 7.31 0.00 36.38 4.70
821 849 0.247736 ACTGATCGTTGTGAGCCTCC 59.752 55.000 0.00 0.00 29.76 4.30
822 850 0.460987 CTGATCGTTGTGAGCCTCCC 60.461 60.000 0.00 0.00 29.76 4.30
823 851 1.519455 GATCGTTGTGAGCCTCCCG 60.519 63.158 0.00 0.00 0.00 5.14
824 852 1.945354 GATCGTTGTGAGCCTCCCGA 61.945 60.000 0.00 0.00 0.00 5.14
825 853 1.541310 ATCGTTGTGAGCCTCCCGAA 61.541 55.000 0.00 0.00 0.00 4.30
826 854 1.738099 CGTTGTGAGCCTCCCGAAG 60.738 63.158 0.00 0.00 0.00 3.79
839 867 4.470876 CGAAGGAGCGCTCGTTAA 57.529 55.556 36.96 0.00 37.75 2.01
840 868 2.733127 CGAAGGAGCGCTCGTTAAA 58.267 52.632 36.96 0.00 37.75 1.52
841 869 1.278238 CGAAGGAGCGCTCGTTAAAT 58.722 50.000 36.96 21.28 37.75 1.40
850 878 4.694339 AGCGCTCGTTAAATAGAAGGAAT 58.306 39.130 2.64 0.00 0.00 3.01
902 930 2.967615 GATACGGCCCGCAAGCTC 60.968 66.667 1.23 0.00 0.00 4.09
903 931 4.547367 ATACGGCCCGCAAGCTCC 62.547 66.667 1.23 0.00 0.00 4.70
907 935 4.770874 GGCCCGCAAGCTCCGTAA 62.771 66.667 0.00 0.00 0.00 3.18
960 1039 2.322999 CTGCGGCGCCTTGAAATACC 62.323 60.000 30.82 0.00 0.00 2.73
1370 1681 4.227134 CGGAGGTGGAGGCCATCG 62.227 72.222 5.01 0.00 40.09 3.84
1537 1860 3.148279 GTCGTCGAGCCCATCCCT 61.148 66.667 0.00 0.00 0.00 4.20
1667 2053 1.070445 TGCCAAATTTGTGCTTCCTGG 59.930 47.619 23.31 7.65 0.00 4.45
1668 2054 1.344114 GCCAAATTTGTGCTTCCTGGA 59.656 47.619 16.73 0.00 0.00 3.86
2010 2760 2.114411 GTTTTCCTGGCCGGGACA 59.886 61.111 34.06 25.08 34.78 4.02
2078 2970 3.243602 GGCAACAAGTGAAAACCGGTAAT 60.244 43.478 8.00 0.00 0.00 1.89
2243 3665 6.824305 AAGATGATCTGAAATTGAAACCGT 57.176 33.333 0.00 0.00 0.00 4.83
2274 3696 5.892160 TGATTCATCTCTTTTCAGCCTTG 57.108 39.130 0.00 0.00 0.00 3.61
2447 5579 4.995487 GGGTGTAGTCCTGTAGAAAAGTTG 59.005 45.833 0.00 0.00 0.00 3.16
2465 5636 7.654022 AAAGTTGAAGTAGTTGGATGGAAAA 57.346 32.000 0.00 0.00 0.00 2.29
2501 5706 5.125417 TGTGGATTTATCAAAGCTAGTTGGC 59.875 40.000 0.00 0.00 0.00 4.52
2635 6513 9.301897 ACCTTTGCAGAGAAGATACTAATTTTT 57.698 29.630 5.68 0.00 0.00 1.94
2851 6747 2.104963 GGGAGTCCTGACAGTTCACTTT 59.895 50.000 9.58 0.00 0.00 2.66
2854 6750 4.035675 GGAGTCCTGACAGTTCACTTTTTG 59.964 45.833 0.41 0.00 0.00 2.44
2876 6772 0.321653 AAGTTTCGCTGCCTCGGATT 60.322 50.000 0.00 0.00 0.00 3.01
2938 6841 3.845781 TCAGAAAACTCAGCAGGTCTT 57.154 42.857 0.00 0.00 0.00 3.01
2991 6895 4.582701 TGGCTGAACAATTTTGTAGTGG 57.417 40.909 0.00 0.00 41.31 4.00
3010 6914 2.093500 TGGTGCTGGAATGTAGTAGCTG 60.093 50.000 0.00 0.00 37.10 4.24
3058 6963 1.130561 GCCACGGCTTCATAGACAAAC 59.869 52.381 0.00 0.00 38.26 2.93
3223 8409 1.623811 TGGGTTCTTCCTGTGAGCTAC 59.376 52.381 0.00 0.00 36.25 3.58
3224 8410 1.903183 GGGTTCTTCCTGTGAGCTACT 59.097 52.381 0.00 0.00 36.25 2.57
3225 8411 2.093921 GGGTTCTTCCTGTGAGCTACTC 60.094 54.545 0.00 0.00 36.25 2.59
3226 8412 2.093921 GGTTCTTCCTGTGAGCTACTCC 60.094 54.545 0.00 0.00 0.00 3.85
3227 8413 1.853963 TCTTCCTGTGAGCTACTCCC 58.146 55.000 0.00 0.00 0.00 4.30
3228 8414 1.359474 TCTTCCTGTGAGCTACTCCCT 59.641 52.381 0.00 0.00 0.00 4.20
3229 8415 1.754226 CTTCCTGTGAGCTACTCCCTC 59.246 57.143 0.00 0.00 0.00 4.30
3230 8416 0.033011 TCCTGTGAGCTACTCCCTCC 60.033 60.000 0.00 0.00 0.00 4.30
3231 8417 1.388065 CCTGTGAGCTACTCCCTCCG 61.388 65.000 0.00 0.00 0.00 4.63
3232 8418 0.681564 CTGTGAGCTACTCCCTCCGT 60.682 60.000 0.00 0.00 0.00 4.69
3233 8419 0.251653 TGTGAGCTACTCCCTCCGTT 60.252 55.000 0.00 0.00 0.00 4.44
3234 8420 0.456628 GTGAGCTACTCCCTCCGTTC 59.543 60.000 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
293 309 5.818678 ACCCTGTAACACAATCTCTGTTA 57.181 39.130 0.00 0.00 35.47 2.41
521 548 0.795735 CGACAGGTAACGCTACGTGG 60.796 60.000 19.41 0.00 44.58 4.94
598 626 0.946528 AAACGTTACCTTCCAACCGC 59.053 50.000 0.00 0.00 0.00 5.68
637 665 8.400186 CGGTCTTCCTTAACTTTTAGAACAAAA 58.600 33.333 0.00 0.00 0.00 2.44
638 666 7.012610 CCGGTCTTCCTTAACTTTTAGAACAAA 59.987 37.037 0.00 0.00 0.00 2.83
639 667 6.484308 CCGGTCTTCCTTAACTTTTAGAACAA 59.516 38.462 0.00 0.00 0.00 2.83
640 668 5.993441 CCGGTCTTCCTTAACTTTTAGAACA 59.007 40.000 0.00 0.00 0.00 3.18
641 669 5.994054 ACCGGTCTTCCTTAACTTTTAGAAC 59.006 40.000 0.00 0.00 0.00 3.01
642 670 5.993441 CACCGGTCTTCCTTAACTTTTAGAA 59.007 40.000 2.59 0.00 0.00 2.10
643 671 5.305128 TCACCGGTCTTCCTTAACTTTTAGA 59.695 40.000 2.59 0.00 0.00 2.10
644 672 5.544650 TCACCGGTCTTCCTTAACTTTTAG 58.455 41.667 2.59 0.00 0.00 1.85
645 673 5.549742 TCACCGGTCTTCCTTAACTTTTA 57.450 39.130 2.59 0.00 0.00 1.52
646 674 4.426736 TCACCGGTCTTCCTTAACTTTT 57.573 40.909 2.59 0.00 0.00 2.27
647 675 4.426736 TTCACCGGTCTTCCTTAACTTT 57.573 40.909 2.59 0.00 0.00 2.66
648 676 4.426736 TTTCACCGGTCTTCCTTAACTT 57.573 40.909 2.59 0.00 0.00 2.66
649 677 4.426736 TTTTCACCGGTCTTCCTTAACT 57.573 40.909 2.59 0.00 0.00 2.24
650 678 5.616204 CGATTTTTCACCGGTCTTCCTTAAC 60.616 44.000 2.59 0.00 0.00 2.01
651 679 4.453136 CGATTTTTCACCGGTCTTCCTTAA 59.547 41.667 2.59 0.00 0.00 1.85
652 680 3.998341 CGATTTTTCACCGGTCTTCCTTA 59.002 43.478 2.59 0.00 0.00 2.69
653 681 2.812011 CGATTTTTCACCGGTCTTCCTT 59.188 45.455 2.59 0.00 0.00 3.36
654 682 2.038033 TCGATTTTTCACCGGTCTTCCT 59.962 45.455 2.59 0.00 0.00 3.36
655 683 2.419667 TCGATTTTTCACCGGTCTTCC 58.580 47.619 2.59 0.00 0.00 3.46
656 684 4.477302 TTTCGATTTTTCACCGGTCTTC 57.523 40.909 2.59 0.00 0.00 2.87
657 685 4.277423 ACATTTCGATTTTTCACCGGTCTT 59.723 37.500 2.59 0.00 0.00 3.01
658 686 3.818773 ACATTTCGATTTTTCACCGGTCT 59.181 39.130 2.59 0.00 0.00 3.85
659 687 4.155310 ACATTTCGATTTTTCACCGGTC 57.845 40.909 2.59 0.00 0.00 4.79
660 688 3.566322 TGACATTTCGATTTTTCACCGGT 59.434 39.130 0.00 0.00 0.00 5.28
661 689 4.153958 TGACATTTCGATTTTTCACCGG 57.846 40.909 0.00 0.00 0.00 5.28
662 690 6.503616 TTTTGACATTTCGATTTTTCACCG 57.496 33.333 0.00 0.00 0.00 4.94
663 691 8.055986 GTCTTTTTGACATTTCGATTTTTCACC 58.944 33.333 0.00 0.00 44.73 4.02
664 692 8.956698 GTCTTTTTGACATTTCGATTTTTCAC 57.043 30.769 0.00 0.00 44.73 3.18
697 725 7.267388 CGCGTTTTCTGCTTTTTAAAAGTTTTT 59.733 29.630 17.30 0.00 0.00 1.94
698 726 6.734617 CGCGTTTTCTGCTTTTTAAAAGTTTT 59.265 30.769 17.30 6.06 0.00 2.43
699 727 6.128769 ACGCGTTTTCTGCTTTTTAAAAGTTT 60.129 30.769 17.30 0.00 0.00 2.66
700 728 5.346551 ACGCGTTTTCTGCTTTTTAAAAGTT 59.653 32.000 17.30 0.00 0.00 2.66
701 729 4.860352 ACGCGTTTTCTGCTTTTTAAAAGT 59.140 33.333 17.30 0.00 0.00 2.66
702 730 5.369947 ACGCGTTTTCTGCTTTTTAAAAG 57.630 34.783 5.58 12.62 0.00 2.27
703 731 5.053156 CGTACGCGTTTTCTGCTTTTTAAAA 60.053 36.000 20.78 0.00 0.00 1.52
704 732 4.433945 CGTACGCGTTTTCTGCTTTTTAAA 59.566 37.500 20.78 0.00 0.00 1.52
705 733 3.961240 CGTACGCGTTTTCTGCTTTTTAA 59.039 39.130 20.78 0.00 0.00 1.52
706 734 3.533919 CGTACGCGTTTTCTGCTTTTTA 58.466 40.909 20.78 0.00 0.00 1.52
707 735 2.368685 CGTACGCGTTTTCTGCTTTTT 58.631 42.857 20.78 0.00 0.00 1.94
708 736 1.333435 CCGTACGCGTTTTCTGCTTTT 60.333 47.619 20.78 0.00 36.15 2.27
709 737 0.233848 CCGTACGCGTTTTCTGCTTT 59.766 50.000 20.78 0.00 36.15 3.51
710 738 0.598158 TCCGTACGCGTTTTCTGCTT 60.598 50.000 20.78 0.00 36.15 3.91
711 739 0.598158 TTCCGTACGCGTTTTCTGCT 60.598 50.000 20.78 0.00 36.15 4.24
712 740 0.232816 TTTCCGTACGCGTTTTCTGC 59.767 50.000 20.78 0.00 36.15 4.26
713 741 2.649140 TTTTCCGTACGCGTTTTCTG 57.351 45.000 20.78 5.47 36.15 3.02
714 742 3.883631 ATTTTTCCGTACGCGTTTTCT 57.116 38.095 20.78 0.00 36.15 2.52
715 743 6.417726 TTTTATTTTTCCGTACGCGTTTTC 57.582 33.333 20.78 7.93 36.15 2.29
716 744 6.802950 TTTTTATTTTTCCGTACGCGTTTT 57.197 29.167 20.78 0.00 36.15 2.43
739 767 1.072648 TGGACGTTCCCTCCGATTTTT 59.927 47.619 0.00 0.00 35.03 1.94
740 768 0.688487 TGGACGTTCCCTCCGATTTT 59.312 50.000 0.00 0.00 35.03 1.82
741 769 0.909623 ATGGACGTTCCCTCCGATTT 59.090 50.000 0.00 0.00 35.03 2.17
742 770 1.784358 TATGGACGTTCCCTCCGATT 58.216 50.000 0.00 0.00 35.03 3.34
743 771 1.411612 GTTATGGACGTTCCCTCCGAT 59.588 52.381 0.00 0.00 35.03 4.18
744 772 0.819582 GTTATGGACGTTCCCTCCGA 59.180 55.000 0.00 0.00 35.03 4.55
745 773 0.526954 CGTTATGGACGTTCCCTCCG 60.527 60.000 0.00 0.00 46.49 4.63
746 774 3.357504 CGTTATGGACGTTCCCTCC 57.642 57.895 0.00 0.00 46.49 4.30
782 810 2.426752 CACTTGGCGCGTTTTCGG 60.427 61.111 8.43 0.00 44.29 4.30
793 821 0.518636 CAACGATCAGTGCCACTTGG 59.481 55.000 0.00 0.00 38.53 3.61
794 822 1.069703 CACAACGATCAGTGCCACTTG 60.070 52.381 0.00 0.00 0.00 3.16
795 823 1.202639 TCACAACGATCAGTGCCACTT 60.203 47.619 0.00 0.00 35.76 3.16
796 824 0.392706 TCACAACGATCAGTGCCACT 59.607 50.000 0.00 0.00 35.76 4.00
797 825 0.792640 CTCACAACGATCAGTGCCAC 59.207 55.000 0.00 0.00 35.76 5.01
798 826 0.950555 GCTCACAACGATCAGTGCCA 60.951 55.000 0.00 0.00 35.76 4.92
799 827 1.639298 GGCTCACAACGATCAGTGCC 61.639 60.000 0.00 0.00 35.76 5.01
800 828 0.671781 AGGCTCACAACGATCAGTGC 60.672 55.000 0.00 0.00 35.76 4.40
801 829 1.354040 GAGGCTCACAACGATCAGTG 58.646 55.000 10.25 0.00 37.10 3.66
802 830 0.247736 GGAGGCTCACAACGATCAGT 59.752 55.000 17.69 0.00 0.00 3.41
803 831 0.460987 GGGAGGCTCACAACGATCAG 60.461 60.000 17.69 0.00 0.00 2.90
804 832 1.596934 GGGAGGCTCACAACGATCA 59.403 57.895 17.69 0.00 0.00 2.92
805 833 1.519455 CGGGAGGCTCACAACGATC 60.519 63.158 18.39 0.00 0.00 3.69
806 834 1.541310 TTCGGGAGGCTCACAACGAT 61.541 55.000 18.39 0.00 0.00 3.73
807 835 2.154798 CTTCGGGAGGCTCACAACGA 62.155 60.000 18.39 16.60 0.00 3.85
808 836 1.738099 CTTCGGGAGGCTCACAACG 60.738 63.158 18.39 14.62 0.00 4.10
809 837 1.376037 CCTTCGGGAGGCTCACAAC 60.376 63.158 18.39 2.70 39.09 3.32
810 838 1.535444 TCCTTCGGGAGGCTCACAA 60.535 57.895 18.39 9.28 45.87 3.33
811 839 2.119611 TCCTTCGGGAGGCTCACA 59.880 61.111 18.39 0.80 45.87 3.58
820 848 2.552585 TTAACGAGCGCTCCTTCGGG 62.553 60.000 30.66 17.99 0.00 5.14
821 849 0.734942 TTTAACGAGCGCTCCTTCGG 60.735 55.000 30.66 18.71 0.00 4.30
822 850 1.278238 ATTTAACGAGCGCTCCTTCG 58.722 50.000 30.66 22.24 0.00 3.79
823 851 3.703420 TCTATTTAACGAGCGCTCCTTC 58.297 45.455 30.66 8.16 0.00 3.46
824 852 3.795623 TCTATTTAACGAGCGCTCCTT 57.204 42.857 30.66 26.03 0.00 3.36
825 853 3.491104 CCTTCTATTTAACGAGCGCTCCT 60.491 47.826 30.66 20.33 0.00 3.69
826 854 2.795470 CCTTCTATTTAACGAGCGCTCC 59.205 50.000 30.66 13.79 0.00 4.70
827 855 3.703420 TCCTTCTATTTAACGAGCGCTC 58.297 45.455 27.64 27.64 0.00 5.03
828 856 3.795623 TCCTTCTATTTAACGAGCGCT 57.204 42.857 11.27 11.27 0.00 5.92
829 857 4.506654 TCATTCCTTCTATTTAACGAGCGC 59.493 41.667 0.00 0.00 0.00 5.92
830 858 6.583912 TTCATTCCTTCTATTTAACGAGCG 57.416 37.500 0.00 0.00 0.00 5.03
831 859 6.423042 GCTTCATTCCTTCTATTTAACGAGC 58.577 40.000 0.00 0.00 0.00 5.03
832 860 6.292381 CCGCTTCATTCCTTCTATTTAACGAG 60.292 42.308 0.00 0.00 0.00 4.18
833 861 5.522460 CCGCTTCATTCCTTCTATTTAACGA 59.478 40.000 0.00 0.00 0.00 3.85
834 862 5.738370 CCGCTTCATTCCTTCTATTTAACG 58.262 41.667 0.00 0.00 0.00 3.18
835 863 5.297029 AGCCGCTTCATTCCTTCTATTTAAC 59.703 40.000 0.00 0.00 0.00 2.01
836 864 5.437060 AGCCGCTTCATTCCTTCTATTTAA 58.563 37.500 0.00 0.00 0.00 1.52
837 865 5.036117 AGCCGCTTCATTCCTTCTATTTA 57.964 39.130 0.00 0.00 0.00 1.40
838 866 3.879892 GAGCCGCTTCATTCCTTCTATTT 59.120 43.478 0.00 0.00 0.00 1.40
839 867 3.471680 GAGCCGCTTCATTCCTTCTATT 58.528 45.455 0.00 0.00 0.00 1.73
840 868 2.546795 CGAGCCGCTTCATTCCTTCTAT 60.547 50.000 0.00 0.00 0.00 1.98
841 869 1.202417 CGAGCCGCTTCATTCCTTCTA 60.202 52.381 0.00 0.00 0.00 2.10
902 930 1.690219 ATCCTCTGCCCAGCTTACGG 61.690 60.000 0.00 0.00 0.00 4.02
903 931 1.040646 TATCCTCTGCCCAGCTTACG 58.959 55.000 0.00 0.00 0.00 3.18
907 935 2.136878 CCGTATCCTCTGCCCAGCT 61.137 63.158 0.00 0.00 0.00 4.24
945 1024 2.004808 GCCAGGTATTTCAAGGCGCC 62.005 60.000 21.89 21.89 35.42 6.53
1007 1093 3.151022 GCGGTGGAGAGAGGAGGG 61.151 72.222 0.00 0.00 0.00 4.30
1008 1094 3.522731 CGCGGTGGAGAGAGGAGG 61.523 72.222 0.00 0.00 0.00 4.30
1009 1095 4.200283 GCGCGGTGGAGAGAGGAG 62.200 72.222 8.83 0.00 0.00 3.69
1201 1350 0.101040 CGTCTCCGCCGTGGTAAATA 59.899 55.000 0.00 0.00 39.52 1.40
1244 1555 3.715097 GCTGTGGAGGAGCAGGCT 61.715 66.667 0.00 0.00 36.40 4.58
1537 1860 1.078214 CATGCCCGCCTCTCTGAAA 60.078 57.895 0.00 0.00 0.00 2.69
1667 2053 6.115446 TGAACCATTAACCATCTCACTCATC 58.885 40.000 0.00 0.00 0.00 2.92
1668 2054 6.065976 TGAACCATTAACCATCTCACTCAT 57.934 37.500 0.00 0.00 0.00 2.90
1975 2725 1.096416 ACGACAATCTCGAGGGTCTC 58.904 55.000 21.75 9.76 46.14 3.36
1976 2726 1.546961 AACGACAATCTCGAGGGTCT 58.453 50.000 21.75 11.81 46.14 3.85
1977 2727 2.365408 AAACGACAATCTCGAGGGTC 57.635 50.000 13.56 15.98 46.14 4.46
1995 2745 3.961414 GGTGTCCCGGCCAGGAAA 61.961 66.667 10.01 0.00 45.00 3.13
2010 2760 0.116143 AAGAGAGGCTCTCACCAGGT 59.884 55.000 38.07 19.38 45.73 4.00
2078 2970 8.958119 ATAACTGTTTTTCAGACTACAACAGA 57.042 30.769 15.41 0.00 44.76 3.41
2274 3696 2.996249 TCATCACCATCTTCTCTGCC 57.004 50.000 0.00 0.00 0.00 4.85
2447 5579 6.940867 ACCTACTTTTTCCATCCAACTACTTC 59.059 38.462 0.00 0.00 0.00 3.01
2465 5636 3.456380 AAATCCACATGGCACCTACTT 57.544 42.857 0.00 0.00 34.44 2.24
2501 5706 9.393512 AGTTATCTGAATCAAGAAGAGAAATGG 57.606 33.333 0.00 0.00 0.00 3.16
2851 6747 1.333619 GAGGCAGCGAAACTTGTCAAA 59.666 47.619 0.00 0.00 0.00 2.69
2854 6750 1.493311 CGAGGCAGCGAAACTTGTC 59.507 57.895 0.00 0.00 0.00 3.18
2876 6772 1.269517 GGCAAAAGTTGACGCCATCAA 60.270 47.619 5.76 0.00 45.39 2.57
2969 6873 4.404073 ACCACTACAAAATTGTTCAGCCAA 59.596 37.500 3.85 0.00 42.35 4.52
2991 6895 1.936547 GCAGCTACTACATTCCAGCAC 59.063 52.381 0.00 0.00 36.47 4.40
3010 6914 6.642540 TCATATCACACGATGAATGTTAGAGC 59.357 38.462 0.00 0.00 41.93 4.09
3058 6963 0.890683 AGTACCCTACGGTGAAACGG 59.109 55.000 0.00 0.00 44.40 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.