Multiple sequence alignment - TraesCS2D01G077100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G077100 chr2D 100.000 5349 0 0 1 5349 32959630 32964978 0.000000e+00 9878.0
1 TraesCS2D01G077100 chr2B 86.253 3819 279 105 888 4619 54731956 54735615 0.000000e+00 3917.0
2 TraesCS2D01G077100 chr2B 88.715 576 38 11 253 807 54731386 54731955 0.000000e+00 678.0
3 TraesCS2D01G077100 chr2B 84.874 595 43 25 4671 5230 54735630 54736212 1.680000e-154 556.0
4 TraesCS2D01G077100 chr2B 89.354 263 21 1 1 263 54727798 54728053 1.860000e-84 324.0
5 TraesCS2D01G077100 chr2B 91.860 86 5 2 809 892 166044560 166044475 9.410000e-23 119.0
6 TraesCS2D01G077100 chr2A 90.879 1491 87 27 1854 3326 36119537 36120996 0.000000e+00 1954.0
7 TraesCS2D01G077100 chr2A 92.821 989 51 13 2303 3286 35469056 35468083 0.000000e+00 1415.0
8 TraesCS2D01G077100 chr2A 84.126 1178 132 31 3361 4509 36121134 36122285 0.000000e+00 1088.0
9 TraesCS2D01G077100 chr2A 83.308 659 46 20 998 1633 36118863 36119480 2.820000e-152 549.0
10 TraesCS2D01G077100 chr2A 83.646 373 37 16 4729 5084 36122973 36123338 3.990000e-86 329.0
11 TraesCS2D01G077100 chr2A 80.388 464 55 20 4677 5130 35467123 35466686 2.400000e-83 320.0
12 TraesCS2D01G077100 chr2A 92.929 99 2 1 4519 4612 35467238 35467140 7.220000e-29 139.0
13 TraesCS2D01G077100 chr2A 97.333 75 2 0 809 883 138434528 138434602 1.560000e-25 128.0
14 TraesCS2D01G077100 chr2A 91.954 87 6 1 809 894 202889816 202889730 2.620000e-23 121.0
15 TraesCS2D01G077100 chr2A 92.958 71 5 0 1768 1838 36119479 36119549 2.640000e-18 104.0
16 TraesCS2D01G077100 chr2A 90.769 65 1 1 4519 4578 36122362 36122426 1.230000e-11 82.4
17 TraesCS2D01G077100 chrUn 92.539 1032 54 14 2303 3326 280377624 280376608 0.000000e+00 1458.0
18 TraesCS2D01G077100 chrUn 84.295 1178 128 33 3361 4509 280376470 280375321 0.000000e+00 1098.0
19 TraesCS2D01G077100 chrUn 90.769 65 1 1 4519 4578 280375244 280375180 1.230000e-11 82.4
20 TraesCS2D01G077100 chr6B 96.203 79 3 0 809 887 13827534 13827612 4.350000e-26 130.0
21 TraesCS2D01G077100 chr5A 96.203 79 3 0 809 887 472310949 472311027 4.350000e-26 130.0
22 TraesCS2D01G077100 chr5A 92.857 84 6 0 809 892 450750784 450750701 7.280000e-24 122.0
23 TraesCS2D01G077100 chr6D 94.937 79 4 0 809 887 114156782 114156704 2.020000e-24 124.0
24 TraesCS2D01G077100 chr6D 94.937 79 4 0 809 887 427344863 427344941 2.020000e-24 124.0
25 TraesCS2D01G077100 chr1D 89.888 89 9 0 812 900 64145512 64145424 1.220000e-21 115.0
26 TraesCS2D01G077100 chr1D 84.211 114 13 5 624 734 180150078 180150189 7.330000e-19 106.0
27 TraesCS2D01G077100 chr1A 82.456 114 16 4 624 734 197106798 197106910 4.410000e-16 97.1
28 TraesCS2D01G077100 chr4A 79.612 103 13 5 624 724 54385366 54385270 3.460000e-07 67.6
29 TraesCS2D01G077100 chr4D 81.395 86 11 5 630 712 397152951 397152868 1.240000e-06 65.8
30 TraesCS2D01G077100 chr7A 80.460 87 13 4 624 708 692051226 692051310 4.470000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G077100 chr2D 32959630 32964978 5348 False 9878.000000 9878 100.000000 1 5349 1 chr2D.!!$F1 5348
1 TraesCS2D01G077100 chr2B 54727798 54736212 8414 False 1368.750000 3917 87.299000 1 5230 4 chr2B.!!$F1 5229
2 TraesCS2D01G077100 chr2A 36118863 36123338 4475 False 684.400000 1954 87.614333 998 5084 6 chr2A.!!$F2 4086
3 TraesCS2D01G077100 chr2A 35466686 35469056 2370 True 624.666667 1415 88.712667 2303 5130 3 chr2A.!!$R2 2827
4 TraesCS2D01G077100 chrUn 280375180 280377624 2444 True 879.466667 1458 89.201000 2303 4578 3 chrUn.!!$R1 2275

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 180 0.106719 ATTGGCAACCGGGGATGTAG 60.107 55.000 6.32 0.0 0.00 2.74 F
885 4249 0.321298 TTGCTTTACGGAGGGAGCAC 60.321 55.000 2.33 0.0 44.07 4.40 F
990 4361 0.594602 TTCGACCCGACTGTACAGTG 59.405 55.000 32.51 22.1 42.66 3.66 F
1744 5165 1.211212 CCATCAGGATGCTTCTCCACA 59.789 52.381 3.72 0.0 37.81 4.17 F
3646 7215 0.178975 TTCTGCCGGGTTCACCAATT 60.179 50.000 2.18 0.0 40.22 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1381 4788 0.107703 ACATGCGGACTATGTGTGGG 60.108 55.000 0.00 0.00 37.38 4.61 R
1743 5164 0.250038 ACGCAGCTGGCTATATGGTG 60.250 55.000 17.12 0.00 41.67 4.17 R
2398 5834 2.502295 CTTGCCAGAAGAAGTTGCTCT 58.498 47.619 0.00 0.00 0.00 4.09 R
3678 7250 0.168128 GGCGAAACCAAACCGAGATG 59.832 55.000 0.00 0.00 38.86 2.90 R
4860 8959 0.246989 CGTGCACGTACGTTAATGCC 60.247 55.000 30.50 11.63 39.13 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.530857 GCCACCTAGCGATGCCGT 62.531 66.667 0.00 0.00 38.24 5.68
64 65 2.050895 CCGACGGCTAGAGATGCG 60.051 66.667 0.00 0.00 0.00 4.73
65 66 2.716244 CGACGGCTAGAGATGCGT 59.284 61.111 0.00 0.00 0.00 5.24
84 85 2.474526 CGTCGACTGACAAATGGAATGC 60.475 50.000 14.70 0.00 45.80 3.56
114 115 3.198635 ACATATAAGGATGATGGAGCCGG 59.801 47.826 0.00 0.00 34.13 6.13
115 116 0.987294 ATAAGGATGATGGAGCCGGG 59.013 55.000 2.18 0.00 34.13 5.73
116 117 1.127567 TAAGGATGATGGAGCCGGGG 61.128 60.000 2.18 0.00 34.13 5.73
117 118 4.650377 GGATGATGGAGCCGGGGC 62.650 72.222 2.18 0.18 42.33 5.80
118 119 4.650377 GATGATGGAGCCGGGGCC 62.650 72.222 2.18 0.00 43.17 5.80
132 133 4.864334 GGCCCAGGTGCGAGGATG 62.864 72.222 0.00 0.00 0.00 3.51
143 144 2.452813 CGAGGATGTTGGAACCGCG 61.453 63.158 0.00 0.00 40.00 6.46
145 146 1.079127 AGGATGTTGGAACCGCGAG 60.079 57.895 8.23 0.00 0.00 5.03
146 147 2.750888 GGATGTTGGAACCGCGAGC 61.751 63.158 8.23 0.00 0.00 5.03
147 148 2.746277 ATGTTGGAACCGCGAGCC 60.746 61.111 8.23 6.26 0.00 4.70
161 162 3.274393 GAGCCGTCGATGCTACAAT 57.726 52.632 11.80 0.00 39.69 2.71
168 169 2.785679 GTCGATGCTACAATTGGCAAC 58.214 47.619 12.48 9.46 41.90 4.17
177 178 1.078347 AATTGGCAACCGGGGATGT 59.922 52.632 6.32 0.00 0.00 3.06
179 180 0.106719 ATTGGCAACCGGGGATGTAG 60.107 55.000 6.32 0.00 0.00 2.74
240 241 1.118838 GGAGCTAGCTGTGAGGATGT 58.881 55.000 24.99 0.00 0.00 3.06
247 248 1.696336 AGCTGTGAGGATGTTGTGACT 59.304 47.619 0.00 0.00 0.00 3.41
249 250 3.517100 AGCTGTGAGGATGTTGTGACTAT 59.483 43.478 0.00 0.00 0.00 2.12
270 3615 2.135933 GACTCACAGTGTTGCTACCAC 58.864 52.381 0.00 0.00 0.00 4.16
274 3619 1.301716 CAGTGTTGCTACCACGGCT 60.302 57.895 0.00 0.00 37.88 5.52
314 3659 0.903454 ACGTGGTACTGGAGAAGGGG 60.903 60.000 0.00 0.00 0.00 4.79
333 3678 1.439228 GACATCGAGCTGCTGCCTA 59.561 57.895 7.01 0.00 40.80 3.93
335 3680 1.142531 CATCGAGCTGCTGCCTACA 59.857 57.895 7.01 0.00 40.80 2.74
345 3690 0.895530 GCTGCCTACAGTGACTACCA 59.104 55.000 0.00 0.00 46.30 3.25
369 3714 0.876777 TGGGTGCGGCGAATATTACG 60.877 55.000 12.98 0.00 0.00 3.18
372 3717 0.782384 GTGCGGCGAATATTACGAGG 59.218 55.000 12.98 3.57 0.00 4.63
377 3722 2.413765 CGGCGAATATTACGAGGACGAT 60.414 50.000 0.00 0.00 42.66 3.73
407 3752 3.163616 TGACCCCAAATACCCTCAAAC 57.836 47.619 0.00 0.00 0.00 2.93
440 3785 5.983118 GTGGGTGAAATTGAACACTTTAAGG 59.017 40.000 0.00 0.00 37.22 2.69
461 3806 7.839680 AAGGTAAGTGGAAATGTCAAATTCT 57.160 32.000 2.80 0.00 0.00 2.40
473 3818 3.513515 TGTCAAATTCTGCAAATACCCCC 59.486 43.478 0.00 0.00 0.00 5.40
490 3835 2.089201 CCCCAAACCAACCGTTATCTC 58.911 52.381 0.00 0.00 33.05 2.75
505 3850 4.504461 CGTTATCTCTGAGTTGGTATGTGC 59.496 45.833 4.32 0.00 0.00 4.57
508 3853 0.735978 TCTGAGTTGGTATGTGCGCG 60.736 55.000 0.00 0.00 0.00 6.86
509 3854 0.735978 CTGAGTTGGTATGTGCGCGA 60.736 55.000 12.10 0.00 0.00 5.87
511 3856 1.693083 GAGTTGGTATGTGCGCGACC 61.693 60.000 12.10 8.97 0.00 4.79
533 3895 3.570550 CCTTCCTTCCATCCTCTACTACG 59.429 52.174 0.00 0.00 0.00 3.51
536 3898 2.693591 CCTTCCATCCTCTACTACGCAA 59.306 50.000 0.00 0.00 0.00 4.85
579 3943 3.151554 ACGATTTTCCCCTAAACCACAC 58.848 45.455 0.00 0.00 0.00 3.82
605 3969 2.143231 TAACTCAACCCCCTTCCCTT 57.857 50.000 0.00 0.00 0.00 3.95
630 3994 4.922206 TCTCCCATGTTCTGCATTAACTT 58.078 39.130 11.92 4.69 35.19 2.66
653 4017 9.856162 ACTTAAATCTTACCAAAACCTCAACTA 57.144 29.630 0.00 0.00 0.00 2.24
686 4050 8.631480 AAAAATCTTGTCTTTCTTACCCGTAT 57.369 30.769 0.00 0.00 0.00 3.06
687 4051 7.845066 AAATCTTGTCTTTCTTACCCGTATC 57.155 36.000 0.00 0.00 0.00 2.24
810 4174 8.450578 TCAAAGCCTGAAATATAATGTACCTG 57.549 34.615 0.00 0.00 0.00 4.00
811 4175 8.052748 TCAAAGCCTGAAATATAATGTACCTGT 58.947 33.333 0.00 0.00 0.00 4.00
812 4176 9.337396 CAAAGCCTGAAATATAATGTACCTGTA 57.663 33.333 0.00 0.00 0.00 2.74
813 4177 9.914834 AAAGCCTGAAATATAATGTACCTGTAA 57.085 29.630 0.00 0.00 0.00 2.41
814 4178 9.914834 AAGCCTGAAATATAATGTACCTGTAAA 57.085 29.630 0.00 0.00 0.00 2.01
815 4179 9.561069 AGCCTGAAATATAATGTACCTGTAAAG 57.439 33.333 0.00 0.00 0.00 1.85
816 4180 9.555727 GCCTGAAATATAATGTACCTGTAAAGA 57.444 33.333 0.00 0.00 0.00 2.52
828 4192 8.867112 TGTACCTGTAAAGAAATATAAGAGCG 57.133 34.615 0.00 0.00 0.00 5.03
829 4193 8.472413 TGTACCTGTAAAGAAATATAAGAGCGT 58.528 33.333 0.00 0.00 0.00 5.07
830 4194 9.310716 GTACCTGTAAAGAAATATAAGAGCGTT 57.689 33.333 0.00 0.00 0.00 4.84
831 4195 8.788325 ACCTGTAAAGAAATATAAGAGCGTTT 57.212 30.769 0.00 0.00 0.00 3.60
832 4196 9.880157 ACCTGTAAAGAAATATAAGAGCGTTTA 57.120 29.630 0.00 0.00 0.00 2.01
839 4203 9.654663 AAGAAATATAAGAGCGTTTAGAACACT 57.345 29.630 0.00 0.00 0.00 3.55
846 4210 7.870588 AAGAGCGTTTAGAACACTACTTTAG 57.129 36.000 0.00 0.00 0.00 1.85
847 4211 6.979465 AGAGCGTTTAGAACACTACTTTAGT 58.021 36.000 0.00 0.00 40.28 2.24
876 4240 9.309516 TCTAAACACTCTTATATTGCTTTACGG 57.690 33.333 0.00 0.00 0.00 4.02
877 4241 9.309516 CTAAACACTCTTATATTGCTTTACGGA 57.690 33.333 0.00 0.00 0.00 4.69
878 4242 7.772332 AACACTCTTATATTGCTTTACGGAG 57.228 36.000 0.00 0.00 0.00 4.63
879 4243 6.281405 ACACTCTTATATTGCTTTACGGAGG 58.719 40.000 0.00 0.00 0.00 4.30
880 4244 5.696724 CACTCTTATATTGCTTTACGGAGGG 59.303 44.000 0.00 0.00 0.00 4.30
881 4245 5.601313 ACTCTTATATTGCTTTACGGAGGGA 59.399 40.000 0.00 0.00 0.00 4.20
882 4246 6.097915 TCTTATATTGCTTTACGGAGGGAG 57.902 41.667 0.00 0.00 0.00 4.30
883 4247 2.614829 TATTGCTTTACGGAGGGAGC 57.385 50.000 0.00 0.00 35.74 4.70
884 4248 0.618458 ATTGCTTTACGGAGGGAGCA 59.382 50.000 0.00 0.00 42.84 4.26
885 4249 0.321298 TTGCTTTACGGAGGGAGCAC 60.321 55.000 2.33 0.00 44.07 4.40
886 4250 1.192146 TGCTTTACGGAGGGAGCACT 61.192 55.000 0.00 0.00 39.97 4.40
912 4276 9.256477 TGTATAAGGTTACATCGAACATGATTC 57.744 33.333 0.00 0.00 0.00 2.52
916 4280 6.348498 AGGTTACATCGAACATGATTCATGA 58.652 36.000 28.81 10.37 43.81 3.07
917 4281 6.481313 AGGTTACATCGAACATGATTCATGAG 59.519 38.462 28.81 19.37 43.81 2.90
918 4282 4.808077 ACATCGAACATGATTCATGAGC 57.192 40.909 28.81 18.94 43.81 4.26
924 4288 5.874261 TCGAACATGATTCATGAGCAACTAA 59.126 36.000 28.81 6.86 43.81 2.24
925 4289 6.371271 TCGAACATGATTCATGAGCAACTAAA 59.629 34.615 28.81 5.64 43.81 1.85
927 4291 7.699391 CGAACATGATTCATGAGCAACTAAAAT 59.301 33.333 28.81 3.34 43.81 1.82
930 4294 9.961265 ACATGATTCATGAGCAACTAAAATATG 57.039 29.630 28.81 2.53 43.81 1.78
931 4295 9.961265 CATGATTCATGAGCAACTAAAATATGT 57.039 29.630 19.84 0.00 43.81 2.29
952 4321 7.739022 ATGTATATTTTCGTTGCAACACATG 57.261 32.000 28.01 12.62 0.00 3.21
967 4336 7.047271 TGCAACACATGAGCAATTAGATAGTA 58.953 34.615 0.00 0.00 34.97 1.82
968 4337 7.011389 TGCAACACATGAGCAATTAGATAGTAC 59.989 37.037 0.00 0.00 34.97 2.73
970 4339 5.692204 ACACATGAGCAATTAGATAGTACGC 59.308 40.000 0.00 0.00 0.00 4.42
971 4340 5.923114 CACATGAGCAATTAGATAGTACGCT 59.077 40.000 0.00 0.00 0.00 5.07
972 4341 6.422100 CACATGAGCAATTAGATAGTACGCTT 59.578 38.462 0.00 0.00 0.00 4.68
973 4342 6.642950 ACATGAGCAATTAGATAGTACGCTTC 59.357 38.462 0.00 0.00 0.00 3.86
974 4343 5.212934 TGAGCAATTAGATAGTACGCTTCG 58.787 41.667 0.00 0.00 0.00 3.79
976 4345 5.213675 AGCAATTAGATAGTACGCTTCGAC 58.786 41.667 0.00 0.00 0.00 4.20
977 4346 4.382160 GCAATTAGATAGTACGCTTCGACC 59.618 45.833 0.00 0.00 0.00 4.79
978 4347 4.762956 ATTAGATAGTACGCTTCGACCC 57.237 45.455 0.00 0.00 0.00 4.46
983 4354 1.513586 GTACGCTTCGACCCGACTG 60.514 63.158 10.47 0.00 34.89 3.51
990 4361 0.594602 TTCGACCCGACTGTACAGTG 59.405 55.000 32.51 22.10 42.66 3.66
1006 4377 2.238646 ACAGTGGACCTCAAACAGAACA 59.761 45.455 0.00 0.00 0.00 3.18
1013 4384 4.058817 GACCTCAAACAGAACACTTCGAT 58.941 43.478 0.00 0.00 34.02 3.59
1034 4405 4.908877 GACTCGCCGCGCTAGGAC 62.909 72.222 8.21 0.00 0.00 3.85
1216 4610 1.458588 CCTGCTCCTCCCTACCTCC 60.459 68.421 0.00 0.00 0.00 4.30
1217 4611 1.458588 CTGCTCCTCCCTACCTCCC 60.459 68.421 0.00 0.00 0.00 4.30
1304 4698 4.639171 GCCAACGCCAACCGGTTG 62.639 66.667 35.60 35.60 42.52 3.77
1380 4787 1.610554 AAACTGCATCATGCCCCAGC 61.611 55.000 7.30 0.00 44.23 4.85
1381 4788 3.224324 CTGCATCATGCCCCAGCC 61.224 66.667 7.30 0.00 44.23 4.85
1382 4789 4.845447 TGCATCATGCCCCAGCCC 62.845 66.667 7.30 0.00 44.23 5.19
1403 4810 2.802247 CCACACATAGTCCGCATGTATG 59.198 50.000 0.00 0.00 34.88 2.39
1431 4838 7.392494 TGTTAATTTGGTTATATCGGCACAA 57.608 32.000 0.00 0.00 0.00 3.33
1432 4839 8.001881 TGTTAATTTGGTTATATCGGCACAAT 57.998 30.769 0.00 0.00 0.00 2.71
1475 4882 1.608590 CCAACCCTTTGCGCATATAGG 59.391 52.381 12.75 18.13 0.00 2.57
1499 4906 4.555689 AGAGATGAGAAGGCTGTCCTATT 58.444 43.478 0.00 0.00 43.40 1.73
1642 5061 3.081804 TGCTGTAGAGACGAGAACATCA 58.918 45.455 0.00 0.00 0.00 3.07
1653 5072 4.568956 ACGAGAACATCATGTCATGTGAA 58.431 39.130 12.54 0.00 37.07 3.18
1658 5077 4.380841 ACATCATGTCATGTGAAATGCC 57.619 40.909 12.54 0.00 39.16 4.40
1676 5095 2.031465 TTTTCAGCGGACGGGGAC 59.969 61.111 0.00 0.00 0.00 4.46
1709 5128 5.390251 GCAGACGCCAGATATACATCATTTG 60.390 44.000 0.00 0.00 33.21 2.32
1724 5145 5.532406 ACATCATTTGCCATGTCTATGTACC 59.468 40.000 0.00 0.00 32.21 3.34
1740 5161 2.435805 TGTACCCATCAGGATGCTTCTC 59.564 50.000 3.72 0.00 39.89 2.87
1743 5164 1.476471 CCCATCAGGATGCTTCTCCAC 60.476 57.143 3.72 0.00 37.81 4.02
1744 5165 1.211212 CCATCAGGATGCTTCTCCACA 59.789 52.381 3.72 0.00 37.81 4.17
1760 5181 1.233019 CACACCATATAGCCAGCTGC 58.767 55.000 8.66 3.91 41.71 5.25
1796 5220 9.588096 AGTTCACTTTTCCCTCTTATGTAAATT 57.412 29.630 0.00 0.00 0.00 1.82
1833 5257 6.212187 ACTCTATTCTGAGCCACATATATGCA 59.788 38.462 12.79 0.00 37.58 3.96
1838 5262 8.818622 ATTCTGAGCCACATATATGCATAAAT 57.181 30.769 11.13 0.00 0.00 1.40
1839 5263 8.640063 TTCTGAGCCACATATATGCATAAATT 57.360 30.769 11.13 0.00 0.00 1.82
1840 5264 8.272545 TCTGAGCCACATATATGCATAAATTC 57.727 34.615 11.13 3.13 0.00 2.17
1841 5265 8.105197 TCTGAGCCACATATATGCATAAATTCT 58.895 33.333 11.13 2.12 0.00 2.40
1842 5266 8.640063 TGAGCCACATATATGCATAAATTCTT 57.360 30.769 11.13 0.00 0.00 2.52
1843 5267 9.081204 TGAGCCACATATATGCATAAATTCTTT 57.919 29.630 11.13 0.00 0.00 2.52
1844 5268 9.918630 GAGCCACATATATGCATAAATTCTTTT 57.081 29.630 11.13 0.00 0.00 2.27
1893 5317 6.459435 CGTTATGGTCCATTGCAACATTGATA 60.459 38.462 10.33 0.00 0.00 2.15
1899 5323 5.006941 GTCCATTGCAACATTGATAATTGCC 59.993 40.000 0.00 0.00 46.53 4.52
2021 5445 8.902540 TTATCAACCAGCTTATATACTTGTGG 57.097 34.615 0.00 0.00 0.00 4.17
2065 5489 7.670605 ATACTAATTCACCCTGCAGTTAGTA 57.329 36.000 23.63 23.63 38.34 1.82
2066 5490 6.561519 ACTAATTCACCCTGCAGTTAGTAT 57.438 37.500 18.46 3.47 32.40 2.12
2184 5609 7.589954 CCTACTTTGTGTATTTAGTGTTTGCAC 59.410 37.037 0.00 0.00 45.57 4.57
2223 5654 6.153340 CACATAACTTGGATCACCCTTGAAAT 59.847 38.462 0.00 0.00 34.61 2.17
2225 5656 4.387026 ACTTGGATCACCCTTGAAATCA 57.613 40.909 0.00 0.00 34.61 2.57
2226 5657 4.739793 ACTTGGATCACCCTTGAAATCAA 58.260 39.130 0.00 0.00 34.61 2.57
2227 5658 5.147032 ACTTGGATCACCCTTGAAATCAAA 58.853 37.500 0.00 0.00 34.61 2.69
2228 5659 5.602145 ACTTGGATCACCCTTGAAATCAAAA 59.398 36.000 0.00 0.00 34.61 2.44
2229 5660 5.467035 TGGATCACCCTTGAAATCAAAAC 57.533 39.130 0.00 0.00 34.61 2.43
2230 5661 4.283212 TGGATCACCCTTGAAATCAAAACC 59.717 41.667 0.00 0.00 34.61 3.27
2231 5662 4.528206 GGATCACCCTTGAAATCAAAACCT 59.472 41.667 0.00 0.00 34.61 3.50
2265 5696 8.871629 TTTGTGGGTATCTTGTTATTGTATGT 57.128 30.769 0.00 0.00 0.00 2.29
2398 5834 4.565022 TGATTGACATAGAAACAGACGCA 58.435 39.130 0.00 0.00 0.00 5.24
2432 5868 0.610232 GGCAAGGCATCAGGTCTGTT 60.610 55.000 0.00 0.00 0.00 3.16
2460 5898 3.889815 ACTGGCTTGCTATTCATGCTAA 58.110 40.909 0.00 0.00 43.21 3.09
2470 5908 6.643388 TGCTATTCATGCTAAAAGTCTCAGA 58.357 36.000 0.00 0.00 0.00 3.27
2508 5946 7.376615 TGATCTGTTCTGTATATGATCAGCTG 58.623 38.462 7.63 7.63 36.44 4.24
2523 5961 1.751351 CAGCTGGTGGAGAACGATAGA 59.249 52.381 5.57 0.00 41.38 1.98
2885 6323 5.471456 ACTCTGCCATCGATTTCAATATTCC 59.529 40.000 0.00 0.00 0.00 3.01
2889 6327 4.023193 GCCATCGATTTCAATATTCCGGTT 60.023 41.667 0.00 0.00 0.00 4.44
2980 6419 9.953697 TGTTTTGTTGTATTACTTGTATTCACC 57.046 29.630 0.00 0.00 0.00 4.02
2981 6420 9.953697 GTTTTGTTGTATTACTTGTATTCACCA 57.046 29.630 0.00 0.00 0.00 4.17
3011 6450 8.565896 AAATCATGTTGAGCTTAAGTATGTGA 57.434 30.769 4.02 1.23 0.00 3.58
3021 6460 5.521735 AGCTTAAGTATGTGAGCTTTCGATG 59.478 40.000 4.02 0.00 42.46 3.84
3060 6499 1.625818 GTGATTGGAGTCCCTGTCTGT 59.374 52.381 6.74 0.00 0.00 3.41
3113 6552 4.318831 CCTCTTCTGAACGCAAACTGTTAC 60.319 45.833 0.00 0.00 0.00 2.50
3118 6557 3.206964 TGAACGCAAACTGTTACCATGA 58.793 40.909 0.00 0.00 0.00 3.07
3135 6574 5.797051 ACCATGATATGTTGCAAAAGCTTT 58.203 33.333 5.69 5.69 0.00 3.51
3144 6583 2.468831 TGCAAAAGCTTTGTTTAGCCG 58.531 42.857 13.54 0.00 42.20 5.52
3163 6602 4.823442 AGCCGAATGCATGATTTATCTTCA 59.177 37.500 0.00 0.00 44.83 3.02
3235 6675 7.066404 TGCTAAACTTTTGGGGATTTTTGTTTC 59.934 33.333 0.00 0.00 0.00 2.78
3240 6680 5.443230 TTTGGGGATTTTTGTTTCCAAGT 57.557 34.783 0.00 0.00 35.94 3.16
3336 6905 8.239681 TGTATATATGCTTGTCTAAACGATGC 57.760 34.615 2.37 0.00 0.00 3.91
3337 6906 7.870445 TGTATATATGCTTGTCTAAACGATGCA 59.130 33.333 2.37 0.00 0.00 3.96
3338 6907 5.663795 ATATGCTTGTCTAAACGATGCAG 57.336 39.130 0.00 0.00 32.42 4.41
3339 6908 3.038788 TGCTTGTCTAAACGATGCAGA 57.961 42.857 0.00 0.00 0.00 4.26
3340 6909 3.599343 TGCTTGTCTAAACGATGCAGAT 58.401 40.909 0.00 0.00 0.00 2.90
3341 6910 4.002982 TGCTTGTCTAAACGATGCAGATT 58.997 39.130 0.00 0.00 0.00 2.40
3342 6911 4.142838 TGCTTGTCTAAACGATGCAGATTG 60.143 41.667 0.00 0.00 0.00 2.67
3343 6912 4.142816 GCTTGTCTAAACGATGCAGATTGT 60.143 41.667 0.00 0.00 0.00 2.71
3344 6913 4.926860 TGTCTAAACGATGCAGATTGTG 57.073 40.909 0.00 0.00 0.00 3.33
3345 6914 4.565022 TGTCTAAACGATGCAGATTGTGA 58.435 39.130 0.00 0.00 0.00 3.58
3346 6915 5.178061 TGTCTAAACGATGCAGATTGTGAT 58.822 37.500 0.00 0.00 0.00 3.06
3347 6916 6.337356 TGTCTAAACGATGCAGATTGTGATA 58.663 36.000 0.00 0.00 0.00 2.15
3348 6917 6.986231 TGTCTAAACGATGCAGATTGTGATAT 59.014 34.615 0.00 0.00 0.00 1.63
3349 6918 8.141268 TGTCTAAACGATGCAGATTGTGATATA 58.859 33.333 0.00 0.00 0.00 0.86
3350 6919 9.144747 GTCTAAACGATGCAGATTGTGATATAT 57.855 33.333 0.00 0.00 0.00 0.86
3351 6920 9.143631 TCTAAACGATGCAGATTGTGATATATG 57.856 33.333 0.00 0.00 0.00 1.78
3352 6921 7.734924 AAACGATGCAGATTGTGATATATGT 57.265 32.000 0.00 0.00 0.00 2.29
3353 6922 6.957984 ACGATGCAGATTGTGATATATGTC 57.042 37.500 0.00 0.00 0.00 3.06
3354 6923 6.695429 ACGATGCAGATTGTGATATATGTCT 58.305 36.000 0.89 0.00 0.00 3.41
3355 6924 6.589139 ACGATGCAGATTGTGATATATGTCTG 59.411 38.462 0.89 0.00 36.92 3.51
3356 6925 6.589139 CGATGCAGATTGTGATATATGTCTGT 59.411 38.462 0.89 0.00 36.39 3.41
3357 6926 7.117379 CGATGCAGATTGTGATATATGTCTGTT 59.883 37.037 0.89 0.00 36.39 3.16
3358 6927 7.719778 TGCAGATTGTGATATATGTCTGTTC 57.280 36.000 0.89 0.00 36.39 3.18
3359 6928 7.274447 TGCAGATTGTGATATATGTCTGTTCA 58.726 34.615 0.89 0.00 36.39 3.18
3366 6935 8.667076 TGTGATATATGTCTGTTCAAGATTGG 57.333 34.615 0.89 0.00 37.23 3.16
3583 7152 2.762327 GGGGCAAATGAATCATGTCTGT 59.238 45.455 0.00 0.00 0.00 3.41
3598 7167 1.606601 CTGTCGGTCCCAGTCCTCA 60.607 63.158 0.00 0.00 0.00 3.86
3602 7171 1.185618 TCGGTCCCAGTCCTCAACAG 61.186 60.000 0.00 0.00 0.00 3.16
3646 7215 0.178975 TTCTGCCGGGTTCACCAATT 60.179 50.000 2.18 0.00 40.22 2.32
3678 7250 0.679960 AGCCCTGATGTTTTACCCGC 60.680 55.000 0.00 0.00 0.00 6.13
3679 7251 0.963355 GCCCTGATGTTTTACCCGCA 60.963 55.000 0.00 0.00 0.00 5.69
3694 7266 3.676091 CGCATCTCGGTTTGGTTTC 57.324 52.632 0.00 0.00 33.78 2.78
3699 7271 3.588891 CTCGGTTTGGTTTCGCCGC 62.589 63.158 0.00 0.00 43.45 6.53
3711 7283 2.551097 TTCGCCGCGCTGTGAGATTA 62.551 55.000 14.67 0.00 0.00 1.75
3714 7286 2.240500 CCGCGCTGTGAGATTAGGC 61.241 63.158 5.56 0.00 0.00 3.93
3715 7287 2.240500 CGCGCTGTGAGATTAGGCC 61.241 63.158 5.56 0.00 0.00 5.19
3744 7316 3.099362 CGAACGAGAGAATTGTAGTCGG 58.901 50.000 10.46 0.00 34.94 4.79
3745 7317 2.563471 ACGAGAGAATTGTAGTCGGC 57.437 50.000 10.46 0.00 34.94 5.54
3846 7421 6.214615 TCCTGTACCCTGTTATCTTCATTCAA 59.785 38.462 0.00 0.00 0.00 2.69
3892 7474 8.161699 TGCCGGGAAAGTTTTATCTATTTATC 57.838 34.615 2.18 0.00 0.00 1.75
3893 7475 7.229907 TGCCGGGAAAGTTTTATCTATTTATCC 59.770 37.037 2.18 0.00 0.00 2.59
3903 7485 8.694394 GTTTTATCTATTTATCCGTGTACCGTC 58.306 37.037 0.00 0.00 33.66 4.79
3907 7489 2.945447 TTATCCGTGTACCGTCCTTG 57.055 50.000 0.00 0.00 33.66 3.61
3923 7505 4.437682 TCCTTGAGTGAGGACATGTTTT 57.562 40.909 0.00 0.00 40.87 2.43
3930 7512 4.189231 AGTGAGGACATGTTTTATACGGC 58.811 43.478 0.00 0.00 0.00 5.68
3933 7515 2.093341 AGGACATGTTTTATACGGCGGT 60.093 45.455 13.24 1.39 0.00 5.68
3934 7516 2.679336 GGACATGTTTTATACGGCGGTT 59.321 45.455 13.24 0.00 0.00 4.44
3941 7523 2.486472 TTATACGGCGGTTGGGAAAA 57.514 45.000 13.24 0.00 0.00 2.29
3942 7524 2.713863 TATACGGCGGTTGGGAAAAT 57.286 45.000 13.24 0.00 0.00 1.82
3967 7549 3.815401 CCTTTTTCTCTTGGATGACACGT 59.185 43.478 0.00 0.00 0.00 4.49
3993 7575 8.698973 TTTATCTTTGGTTTGTGGTGAATCTA 57.301 30.769 0.00 0.00 0.00 1.98
4004 7586 8.547894 GTTTGTGGTGAATCTAAAATTCAAACC 58.452 33.333 2.25 2.21 39.43 3.27
4026 7608 0.392461 GGTTTCCATGCGCAGGTAGA 60.392 55.000 21.79 9.19 0.00 2.59
4030 7612 2.749280 TCCATGCGCAGGTAGATATG 57.251 50.000 21.79 8.88 0.00 1.78
4031 7613 2.247358 TCCATGCGCAGGTAGATATGA 58.753 47.619 21.79 6.05 0.00 2.15
4033 7615 2.998670 CCATGCGCAGGTAGATATGAAG 59.001 50.000 21.79 0.00 0.00 3.02
4034 7616 3.555795 CCATGCGCAGGTAGATATGAAGT 60.556 47.826 21.79 0.00 0.00 3.01
4037 7626 3.243535 TGCGCAGGTAGATATGAAGTCAG 60.244 47.826 5.66 0.00 0.00 3.51
4047 7636 7.492994 GGTAGATATGAAGTCAGGTTGAGAAAC 59.507 40.741 0.00 0.00 0.00 2.78
4073 7662 2.159099 GGAGGCACTGACGATGAATGTA 60.159 50.000 0.00 0.00 41.55 2.29
4147 7737 1.696336 CTGTAGGAGGCCTATGCATGT 59.304 52.381 4.42 0.00 38.48 3.21
4223 7813 1.204704 GATACCTTGGCCTTTTGGTGC 59.795 52.381 3.32 0.83 42.99 5.01
4300 7890 3.117131 TGTGGGCTATCTATCTCTGGTGA 60.117 47.826 0.00 0.00 0.00 4.02
4310 7900 2.143876 TCTCTGGTGACCATGATCGA 57.856 50.000 4.03 0.00 30.82 3.59
4328 7918 4.521130 TCGACTGTTCTCTGCAAGTAAT 57.479 40.909 0.00 0.00 33.76 1.89
4340 7930 6.536582 TCTCTGCAAGTAATTAACTGATGAGC 59.463 38.462 0.00 0.00 38.88 4.26
4365 7961 1.174783 GATGATGATGATGGCTGGCC 58.825 55.000 4.43 4.43 0.00 5.36
4384 7985 2.671070 GCTGGCTGTAGCTTGGGA 59.329 61.111 3.63 0.00 40.52 4.37
4410 8011 2.816087 GCCATTCTTCTTCTGTCTGCAA 59.184 45.455 0.00 0.00 0.00 4.08
4412 8013 4.082354 GCCATTCTTCTTCTGTCTGCAATT 60.082 41.667 0.00 0.00 0.00 2.32
4413 8014 5.638783 CCATTCTTCTTCTGTCTGCAATTC 58.361 41.667 0.00 0.00 0.00 2.17
4415 8016 5.936686 TTCTTCTTCTGTCTGCAATTCTG 57.063 39.130 0.00 0.00 0.00 3.02
4482 8087 0.036105 ATGCGACTGATGCCAAGTCA 60.036 50.000 10.15 0.00 33.20 3.41
4498 8103 5.917447 GCCAAGTCATCTTCTTCTTTTGTTC 59.083 40.000 0.00 0.00 0.00 3.18
4501 8106 8.193438 CCAAGTCATCTTCTTCTTTTGTTCTTT 58.807 33.333 0.00 0.00 0.00 2.52
4511 8119 1.419381 TTTGTTCTTTTGGGAGGGCC 58.581 50.000 0.00 0.00 0.00 5.80
4515 8187 2.110899 TGTTCTTTTGGGAGGGCCATTA 59.889 45.455 6.18 0.00 35.15 1.90
4517 8189 1.006639 TCTTTTGGGAGGGCCATTACC 59.993 52.381 6.18 4.90 35.15 2.85
4615 8292 7.607607 TCTCTGACTTAACACAAATGCATACAT 59.392 33.333 0.00 0.00 38.49 2.29
4619 8296 8.022550 TGACTTAACACAAATGCATACATCTTG 58.977 33.333 0.00 2.74 34.62 3.02
4856 8950 1.141881 GTCCAGATCGTCCGTGCAT 59.858 57.895 0.00 0.00 0.00 3.96
4860 8959 2.658593 GATCGTCCGTGCATCCCG 60.659 66.667 0.00 0.00 0.00 5.14
4936 9036 5.733620 ATGAATCTGGATGCAAACAAACT 57.266 34.783 0.00 0.00 28.45 2.66
4943 9043 5.033589 TGGATGCAAACAAACTTTGGATT 57.966 34.783 6.47 0.00 39.89 3.01
4944 9044 5.435291 TGGATGCAAACAAACTTTGGATTT 58.565 33.333 6.47 0.00 39.89 2.17
4945 9045 5.296283 TGGATGCAAACAAACTTTGGATTTG 59.704 36.000 6.47 9.12 39.89 2.32
4946 9046 5.526846 GGATGCAAACAAACTTTGGATTTGA 59.473 36.000 16.29 6.84 39.89 2.69
4947 9047 6.205270 GGATGCAAACAAACTTTGGATTTGAT 59.795 34.615 16.29 9.77 39.89 2.57
4959 9071 1.533965 GGATTTGATTTTCCGCTCGGC 60.534 52.381 2.96 0.00 34.68 5.54
4980 9093 0.785708 CACGAGTTCGCGCAATGAAC 60.786 55.000 16.04 16.04 44.72 3.18
5059 9176 6.594159 ACATCTTTTTCTACGTGGGATTACAG 59.406 38.462 0.00 0.00 0.00 2.74
5066 9183 2.253610 ACGTGGGATTACAGAAGTGGA 58.746 47.619 0.00 0.00 0.00 4.02
5068 9185 3.263425 ACGTGGGATTACAGAAGTGGATT 59.737 43.478 0.00 0.00 0.00 3.01
5072 9189 6.017934 CGTGGGATTACAGAAGTGGATTTATG 60.018 42.308 0.00 0.00 0.00 1.90
5078 9195 8.757982 ATTACAGAAGTGGATTTATGATTGCT 57.242 30.769 0.00 0.00 0.00 3.91
5091 9208 1.341877 TGATTGCTGGTTATGGGTGGG 60.342 52.381 0.00 0.00 0.00 4.61
5109 9227 2.381618 TGGGGATGATGGAGGAACAAAA 59.618 45.455 0.00 0.00 0.00 2.44
5116 9234 4.088634 TGATGGAGGAACAAAAGGGAATG 58.911 43.478 0.00 0.00 0.00 2.67
5122 9241 1.544246 GAACAAAAGGGAATGGGGTCG 59.456 52.381 0.00 0.00 0.00 4.79
5130 9249 1.618616 GGGAATGGGGTCGTTTTGGAT 60.619 52.381 0.00 0.00 0.00 3.41
5132 9251 1.476488 GAATGGGGTCGTTTTGGATGG 59.524 52.381 0.00 0.00 0.00 3.51
5135 9254 0.251430 GGGGTCGTTTTGGATGGGAA 60.251 55.000 0.00 0.00 0.00 3.97
5139 9258 2.288579 GGTCGTTTTGGATGGGAAAACC 60.289 50.000 0.00 0.00 39.23 3.27
5147 9266 1.202348 GGATGGGAAAACCGCAAAGAG 59.798 52.381 0.00 0.00 44.64 2.85
5159 9278 2.100631 CAAAGAGCGCCGTGTAGGG 61.101 63.158 2.29 0.00 41.48 3.53
5176 9310 2.812658 AGGGCCTCCTTTTGATTCAAG 58.187 47.619 0.00 0.00 41.56 3.02
5178 9312 2.557452 GGGCCTCCTTTTGATTCAAGGA 60.557 50.000 0.84 6.86 46.39 3.36
5238 9375 2.998097 TGGAAGCCCAGGAATCGG 59.002 61.111 0.00 0.00 37.58 4.18
5240 9377 2.680370 GGAAGCCCAGGAATCGGGT 61.680 63.158 0.00 0.00 46.40 5.28
5241 9378 1.452108 GAAGCCCAGGAATCGGGTG 60.452 63.158 0.00 0.00 46.40 4.61
5242 9379 1.910580 GAAGCCCAGGAATCGGGTGA 61.911 60.000 0.00 0.00 46.40 4.02
5243 9380 1.281925 AAGCCCAGGAATCGGGTGAT 61.282 55.000 0.00 0.00 46.40 3.06
5244 9381 1.227973 GCCCAGGAATCGGGTGATC 60.228 63.158 0.00 0.00 46.40 2.92
5245 9382 1.983119 GCCCAGGAATCGGGTGATCA 61.983 60.000 0.00 0.00 46.40 2.92
5246 9383 0.546122 CCCAGGAATCGGGTGATCAA 59.454 55.000 0.00 0.00 39.05 2.57
5247 9384 1.064758 CCCAGGAATCGGGTGATCAAA 60.065 52.381 0.00 0.00 39.05 2.69
5248 9385 2.423373 CCCAGGAATCGGGTGATCAAAT 60.423 50.000 0.00 0.00 39.05 2.32
5249 9386 3.290710 CCAGGAATCGGGTGATCAAATT 58.709 45.455 0.00 0.00 32.24 1.82
5250 9387 3.316308 CCAGGAATCGGGTGATCAAATTC 59.684 47.826 0.00 5.05 32.24 2.17
5251 9388 3.316308 CAGGAATCGGGTGATCAAATTCC 59.684 47.826 21.55 21.55 43.69 3.01
5252 9389 3.203040 AGGAATCGGGTGATCAAATTCCT 59.797 43.478 23.94 23.94 46.84 3.36
5253 9390 4.714632 GGAATCGGGTGATCAAATTCCTA 58.285 43.478 21.68 7.38 41.32 2.94
5254 9391 5.316987 GGAATCGGGTGATCAAATTCCTAT 58.683 41.667 21.68 8.82 41.32 2.57
5255 9392 5.182001 GGAATCGGGTGATCAAATTCCTATG 59.818 44.000 21.68 6.98 41.32 2.23
5256 9393 4.085357 TCGGGTGATCAAATTCCTATGG 57.915 45.455 0.00 0.00 0.00 2.74
5257 9394 3.714280 TCGGGTGATCAAATTCCTATGGA 59.286 43.478 0.00 0.00 0.00 3.41
5258 9395 4.165180 TCGGGTGATCAAATTCCTATGGAA 59.835 41.667 0.00 1.24 46.39 3.53
5259 9396 7.913867 AATCGGGTGATCAAATTCCTATGGAAT 60.914 37.037 0.00 6.05 43.21 3.01
5331 9468 6.959639 TTCCTATGGAATACATTCTTTGCC 57.040 37.500 2.19 0.00 41.03 4.52
5332 9469 5.385198 TCCTATGGAATACATTCTTTGCCC 58.615 41.667 2.19 0.00 41.03 5.36
5333 9470 5.134339 TCCTATGGAATACATTCTTTGCCCT 59.866 40.000 2.19 0.00 41.03 5.19
5334 9471 5.835280 CCTATGGAATACATTCTTTGCCCTT 59.165 40.000 2.19 0.00 41.03 3.95
5335 9472 5.859205 ATGGAATACATTCTTTGCCCTTC 57.141 39.130 2.19 0.00 35.97 3.46
5336 9473 4.671831 TGGAATACATTCTTTGCCCTTCA 58.328 39.130 2.19 0.00 37.00 3.02
5337 9474 5.271598 TGGAATACATTCTTTGCCCTTCAT 58.728 37.500 2.19 0.00 37.00 2.57
5338 9475 5.721000 TGGAATACATTCTTTGCCCTTCATT 59.279 36.000 2.19 0.00 37.00 2.57
5339 9476 6.127366 TGGAATACATTCTTTGCCCTTCATTC 60.127 38.462 2.19 0.00 37.00 2.67
5340 9477 6.127366 GGAATACATTCTTTGCCCTTCATTCA 60.127 38.462 2.19 0.00 37.00 2.57
5341 9478 4.796038 ACATTCTTTGCCCTTCATTCAG 57.204 40.909 0.00 0.00 0.00 3.02
5342 9479 4.154942 ACATTCTTTGCCCTTCATTCAGT 58.845 39.130 0.00 0.00 0.00 3.41
5343 9480 5.324409 ACATTCTTTGCCCTTCATTCAGTA 58.676 37.500 0.00 0.00 0.00 2.74
5344 9481 5.416952 ACATTCTTTGCCCTTCATTCAGTAG 59.583 40.000 0.00 0.00 0.00 2.57
5345 9482 3.955471 TCTTTGCCCTTCATTCAGTAGG 58.045 45.455 0.00 0.00 34.73 3.18
5346 9483 3.587061 TCTTTGCCCTTCATTCAGTAGGA 59.413 43.478 0.00 0.00 36.96 2.94
5347 9484 4.042809 TCTTTGCCCTTCATTCAGTAGGAA 59.957 41.667 0.00 0.00 36.96 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.796231 GTCGGTCACGGCATCGCT 62.796 66.667 0.00 0.00 45.76 4.93
44 45 1.725557 GCATCTCTAGCCGTCGGTCA 61.726 60.000 13.94 0.00 0.00 4.02
52 53 0.317436 CAGTCGACGCATCTCTAGCC 60.317 60.000 10.46 0.00 0.00 3.93
53 54 0.658368 TCAGTCGACGCATCTCTAGC 59.342 55.000 10.46 0.00 0.00 3.42
55 56 1.734163 TGTCAGTCGACGCATCTCTA 58.266 50.000 10.46 0.00 45.80 2.43
64 65 2.474526 CGCATTCCATTTGTCAGTCGAC 60.475 50.000 7.70 7.70 42.93 4.20
65 66 1.731709 CGCATTCCATTTGTCAGTCGA 59.268 47.619 0.00 0.00 0.00 4.20
84 85 2.903784 TCATCCTTATATGTGGTCCCCG 59.096 50.000 0.00 0.00 0.00 5.73
115 116 4.864334 CATCCTCGCACCTGGGCC 62.864 72.222 0.00 0.00 0.00 5.80
116 117 3.628646 AACATCCTCGCACCTGGGC 62.629 63.158 0.00 0.00 0.00 5.36
117 118 1.746615 CAACATCCTCGCACCTGGG 60.747 63.158 0.00 0.00 0.00 4.45
118 119 1.746615 CCAACATCCTCGCACCTGG 60.747 63.158 0.00 0.00 0.00 4.45
119 120 0.321564 TTCCAACATCCTCGCACCTG 60.322 55.000 0.00 0.00 0.00 4.00
120 121 0.321653 GTTCCAACATCCTCGCACCT 60.322 55.000 0.00 0.00 0.00 4.00
143 144 1.258982 CAATTGTAGCATCGACGGCTC 59.741 52.381 15.90 9.25 42.62 4.70
145 146 0.304705 CCAATTGTAGCATCGACGGC 59.695 55.000 4.43 2.80 0.00 5.68
146 147 0.304705 GCCAATTGTAGCATCGACGG 59.695 55.000 4.43 0.00 0.00 4.79
147 148 1.006086 TGCCAATTGTAGCATCGACG 58.994 50.000 4.43 0.00 33.08 5.12
161 162 1.301623 CTACATCCCCGGTTGCCAA 59.698 57.895 0.00 0.00 0.00 4.52
168 169 4.280494 CGGTCGCTACATCCCCGG 62.280 72.222 0.00 0.00 35.11 5.73
177 178 2.276201 CATTCCATTTGTCGGTCGCTA 58.724 47.619 0.00 0.00 0.00 4.26
179 180 0.523335 GCATTCCATTTGTCGGTCGC 60.523 55.000 0.00 0.00 0.00 5.19
247 248 3.576550 TGGTAGCAACACTGTGAGTCATA 59.423 43.478 15.86 0.00 0.00 2.15
249 250 1.760029 TGGTAGCAACACTGTGAGTCA 59.240 47.619 15.86 0.00 0.00 3.41
270 3615 2.125952 TCGCAGTCATGTCAGCCG 60.126 61.111 2.05 0.00 0.00 5.52
274 3619 1.607801 CTCCCCTCGCAGTCATGTCA 61.608 60.000 0.00 0.00 0.00 3.58
314 3659 2.021068 TAGGCAGCAGCTCGATGTCC 62.021 60.000 0.00 5.14 35.79 4.02
345 3690 0.606944 TATTCGCCGCACCCAACTTT 60.607 50.000 0.00 0.00 0.00 2.66
357 3702 2.693797 TCGTCCTCGTAATATTCGCC 57.306 50.000 0.00 0.00 38.33 5.54
369 3714 1.275291 TCAACAAGGGTCATCGTCCTC 59.725 52.381 0.00 0.00 32.02 3.71
372 3717 1.439679 GGTCAACAAGGGTCATCGTC 58.560 55.000 0.00 0.00 0.00 4.20
377 3722 0.631753 TTTGGGGTCAACAAGGGTCA 59.368 50.000 0.00 0.00 31.78 4.02
407 3752 5.782893 TCAATTTCACCCACCTTAAACTG 57.217 39.130 0.00 0.00 0.00 3.16
440 3785 6.446318 TGCAGAATTTGACATTTCCACTTAC 58.554 36.000 0.00 0.00 0.00 2.34
461 3806 1.694696 GTTGGTTTGGGGGTATTTGCA 59.305 47.619 0.00 0.00 0.00 4.08
473 3818 4.315803 ACTCAGAGATAACGGTTGGTTTG 58.684 43.478 3.79 0.00 40.09 2.93
490 3835 0.735978 TCGCGCACATACCAACTCAG 60.736 55.000 8.75 0.00 0.00 3.35
505 3850 1.521681 GATGGAAGGAAGGGTCGCG 60.522 63.158 0.00 0.00 0.00 5.87
508 3853 1.886422 AGAGGATGGAAGGAAGGGTC 58.114 55.000 0.00 0.00 0.00 4.46
509 3854 2.319438 AGTAGAGGATGGAAGGAAGGGT 59.681 50.000 0.00 0.00 0.00 4.34
511 3856 3.570550 CGTAGTAGAGGATGGAAGGAAGG 59.429 52.174 0.00 0.00 0.00 3.46
533 3895 0.324645 AACATGTGGGAGGGGATTGC 60.325 55.000 0.00 0.00 0.00 3.56
557 3919 4.325972 GTGTGGTTTAGGGGAAAATCGTA 58.674 43.478 0.00 0.00 0.00 3.43
558 3920 3.151554 GTGTGGTTTAGGGGAAAATCGT 58.848 45.455 0.00 0.00 0.00 3.73
559 3921 2.160813 CGTGTGGTTTAGGGGAAAATCG 59.839 50.000 0.00 0.00 0.00 3.34
560 3922 2.094906 GCGTGTGGTTTAGGGGAAAATC 60.095 50.000 0.00 0.00 0.00 2.17
561 3923 1.890489 GCGTGTGGTTTAGGGGAAAAT 59.110 47.619 0.00 0.00 0.00 1.82
566 3928 0.608035 ATGTGCGTGTGGTTTAGGGG 60.608 55.000 0.00 0.00 0.00 4.79
567 3929 1.243902 AATGTGCGTGTGGTTTAGGG 58.756 50.000 0.00 0.00 0.00 3.53
568 3930 3.500680 AGTTAATGTGCGTGTGGTTTAGG 59.499 43.478 0.00 0.00 0.00 2.69
570 3932 4.127907 TGAGTTAATGTGCGTGTGGTTTA 58.872 39.130 0.00 0.00 0.00 2.01
579 3943 0.808755 GGGGGTTGAGTTAATGTGCG 59.191 55.000 0.00 0.00 0.00 5.34
605 3969 3.657398 AATGCAGAACATGGGAGATCA 57.343 42.857 0.00 0.00 39.60 2.92
785 4149 8.052748 ACAGGTACATTATATTTCAGGCTTTGA 58.947 33.333 0.00 0.00 0.00 2.69
790 4154 9.555727 TCTTTACAGGTACATTATATTTCAGGC 57.444 33.333 0.00 0.00 0.00 4.85
850 4214 9.309516 CCGTAAAGCAATATAAGAGTGTTTAGA 57.690 33.333 0.00 0.00 0.00 2.10
851 4215 9.309516 TCCGTAAAGCAATATAAGAGTGTTTAG 57.690 33.333 0.00 0.00 0.00 1.85
852 4216 9.309516 CTCCGTAAAGCAATATAAGAGTGTTTA 57.690 33.333 0.00 0.00 0.00 2.01
853 4217 7.280205 CCTCCGTAAAGCAATATAAGAGTGTTT 59.720 37.037 0.00 0.00 0.00 2.83
854 4218 6.761714 CCTCCGTAAAGCAATATAAGAGTGTT 59.238 38.462 0.00 0.00 0.00 3.32
855 4219 6.281405 CCTCCGTAAAGCAATATAAGAGTGT 58.719 40.000 0.00 0.00 0.00 3.55
856 4220 5.696724 CCCTCCGTAAAGCAATATAAGAGTG 59.303 44.000 0.00 0.00 0.00 3.51
857 4221 5.601313 TCCCTCCGTAAAGCAATATAAGAGT 59.399 40.000 0.00 0.00 0.00 3.24
858 4222 6.097915 TCCCTCCGTAAAGCAATATAAGAG 57.902 41.667 0.00 0.00 0.00 2.85
859 4223 5.510861 GCTCCCTCCGTAAAGCAATATAAGA 60.511 44.000 0.00 0.00 34.86 2.10
860 4224 4.691216 GCTCCCTCCGTAAAGCAATATAAG 59.309 45.833 0.00 0.00 34.86 1.73
861 4225 4.101898 TGCTCCCTCCGTAAAGCAATATAA 59.898 41.667 0.00 0.00 41.50 0.98
862 4226 3.644265 TGCTCCCTCCGTAAAGCAATATA 59.356 43.478 0.00 0.00 41.50 0.86
863 4227 2.438021 TGCTCCCTCCGTAAAGCAATAT 59.562 45.455 0.00 0.00 41.50 1.28
864 4228 1.834896 TGCTCCCTCCGTAAAGCAATA 59.165 47.619 0.00 0.00 41.50 1.90
865 4229 0.618458 TGCTCCCTCCGTAAAGCAAT 59.382 50.000 0.00 0.00 41.50 3.56
866 4230 0.321298 GTGCTCCCTCCGTAAAGCAA 60.321 55.000 0.00 0.00 45.55 3.91
867 4231 1.192146 AGTGCTCCCTCCGTAAAGCA 61.192 55.000 0.00 0.00 42.16 3.91
868 4232 0.741221 CAGTGCTCCCTCCGTAAAGC 60.741 60.000 0.00 0.00 35.31 3.51
869 4233 0.608640 ACAGTGCTCCCTCCGTAAAG 59.391 55.000 0.00 0.00 0.00 1.85
870 4234 1.927487 TACAGTGCTCCCTCCGTAAA 58.073 50.000 0.00 0.00 0.00 2.01
871 4235 2.154567 ATACAGTGCTCCCTCCGTAA 57.845 50.000 0.00 0.00 0.00 3.18
872 4236 3.220110 CTTATACAGTGCTCCCTCCGTA 58.780 50.000 0.00 0.00 0.00 4.02
873 4237 2.032620 CTTATACAGTGCTCCCTCCGT 58.967 52.381 0.00 0.00 0.00 4.69
874 4238 1.341531 CCTTATACAGTGCTCCCTCCG 59.658 57.143 0.00 0.00 0.00 4.63
875 4239 2.399580 ACCTTATACAGTGCTCCCTCC 58.600 52.381 0.00 0.00 0.00 4.30
876 4240 4.404715 TGTAACCTTATACAGTGCTCCCTC 59.595 45.833 0.00 0.00 32.24 4.30
877 4241 4.359105 TGTAACCTTATACAGTGCTCCCT 58.641 43.478 0.00 0.00 32.24 4.20
878 4242 4.748277 TGTAACCTTATACAGTGCTCCC 57.252 45.455 0.00 0.00 32.24 4.30
879 4243 4.982916 CGATGTAACCTTATACAGTGCTCC 59.017 45.833 0.00 0.00 39.04 4.70
880 4244 5.828747 TCGATGTAACCTTATACAGTGCTC 58.171 41.667 0.00 0.00 39.04 4.26
881 4245 5.847111 TCGATGTAACCTTATACAGTGCT 57.153 39.130 0.00 0.00 39.04 4.40
882 4246 5.808540 TGTTCGATGTAACCTTATACAGTGC 59.191 40.000 0.00 0.00 39.04 4.40
883 4247 7.704899 TCATGTTCGATGTAACCTTATACAGTG 59.295 37.037 0.00 0.00 39.04 3.66
884 4248 7.778083 TCATGTTCGATGTAACCTTATACAGT 58.222 34.615 0.00 0.00 39.04 3.55
885 4249 8.818141 ATCATGTTCGATGTAACCTTATACAG 57.182 34.615 0.00 0.00 39.04 2.74
886 4250 9.256477 GAATCATGTTCGATGTAACCTTATACA 57.744 33.333 0.00 0.00 39.91 2.29
924 4288 9.847706 TGTGTTGCAACGAAAATATACATATTT 57.152 25.926 23.79 2.07 42.91 1.40
927 4291 8.669243 TCATGTGTTGCAACGAAAATATACATA 58.331 29.630 23.79 11.00 0.00 2.29
929 4293 6.903419 TCATGTGTTGCAACGAAAATATACA 58.097 32.000 23.79 18.88 0.00 2.29
930 4294 6.021468 GCTCATGTGTTGCAACGAAAATATAC 60.021 38.462 23.79 14.11 0.00 1.47
931 4295 6.027131 GCTCATGTGTTGCAACGAAAATATA 58.973 36.000 23.79 4.75 0.00 0.86
932 4296 4.858692 GCTCATGTGTTGCAACGAAAATAT 59.141 37.500 23.79 7.95 0.00 1.28
933 4297 4.225984 GCTCATGTGTTGCAACGAAAATA 58.774 39.130 23.79 5.85 0.00 1.40
934 4298 3.052036 GCTCATGTGTTGCAACGAAAAT 58.948 40.909 23.79 11.82 0.00 1.82
935 4299 2.159324 TGCTCATGTGTTGCAACGAAAA 60.159 40.909 23.79 10.05 33.48 2.29
936 4300 1.403323 TGCTCATGTGTTGCAACGAAA 59.597 42.857 23.79 12.52 33.48 3.46
938 4302 1.020437 TTGCTCATGTGTTGCAACGA 58.980 45.000 23.79 13.78 41.06 3.85
939 4303 3.548201 TTGCTCATGTGTTGCAACG 57.452 47.368 23.79 10.24 41.06 4.10
949 4318 6.183359 CGAAGCGTACTATCTAATTGCTCATG 60.183 42.308 0.00 0.00 0.00 3.07
952 4321 5.340138 GTCGAAGCGTACTATCTAATTGCTC 59.660 44.000 0.00 0.00 0.00 4.26
967 4336 1.968017 TACAGTCGGGTCGAAGCGT 60.968 57.895 0.00 0.00 37.72 5.07
968 4337 1.513586 GTACAGTCGGGTCGAAGCG 60.514 63.158 0.00 0.00 37.72 4.68
970 4339 0.879765 ACTGTACAGTCGGGTCGAAG 59.120 55.000 22.95 0.00 36.92 3.79
971 4340 0.594602 CACTGTACAGTCGGGTCGAA 59.405 55.000 25.63 0.00 40.20 3.71
972 4341 1.239296 CCACTGTACAGTCGGGTCGA 61.239 60.000 25.63 0.00 40.20 4.20
973 4342 1.211969 CCACTGTACAGTCGGGTCG 59.788 63.158 25.63 13.06 40.20 4.79
974 4343 0.243095 GTCCACTGTACAGTCGGGTC 59.757 60.000 28.83 21.21 40.20 4.46
976 4345 0.898789 AGGTCCACTGTACAGTCGGG 60.899 60.000 28.83 25.47 40.20 5.14
977 4346 0.526662 GAGGTCCACTGTACAGTCGG 59.473 60.000 25.63 25.93 40.20 4.79
978 4347 1.244816 TGAGGTCCACTGTACAGTCG 58.755 55.000 25.63 19.54 40.20 4.18
983 4354 3.746045 TCTGTTTGAGGTCCACTGTAC 57.254 47.619 0.00 0.00 0.00 2.90
990 4361 2.544267 CGAAGTGTTCTGTTTGAGGTCC 59.456 50.000 0.00 0.00 0.00 4.46
1034 4405 4.436998 GGCGGTGGGTCGAGACAG 62.437 72.222 5.55 0.00 0.00 3.51
1170 4564 4.475444 TGGGGGTAGGGAGGAGCG 62.475 72.222 0.00 0.00 0.00 5.03
1304 4698 3.488090 GAACACCGCGCTACCTGC 61.488 66.667 5.56 0.00 38.57 4.85
1380 4787 0.815213 CATGCGGACTATGTGTGGGG 60.815 60.000 0.00 0.00 0.00 4.96
1381 4788 0.107703 ACATGCGGACTATGTGTGGG 60.108 55.000 0.00 0.00 37.38 4.61
1382 4789 2.595124 TACATGCGGACTATGTGTGG 57.405 50.000 0.00 0.00 39.03 4.17
1383 4790 3.716601 TCATACATGCGGACTATGTGTG 58.283 45.455 8.08 8.08 44.22 3.82
1403 4810 8.964150 GTGCCGATATAACCAAATTAACAAATC 58.036 33.333 0.00 0.00 0.00 2.17
1431 4838 7.147320 TGGGTTGTATCTATGTTCATCAGGAAT 60.147 37.037 0.00 0.00 37.93 3.01
1432 4839 6.157820 TGGGTTGTATCTATGTTCATCAGGAA 59.842 38.462 0.00 0.00 0.00 3.36
1475 4882 1.412343 GGACAGCCTTCTCATCTCTCC 59.588 57.143 0.00 0.00 0.00 3.71
1565 4977 1.465777 GGTACATACAACAACACGGGC 59.534 52.381 0.00 0.00 0.00 6.13
1653 5072 1.586154 CCGTCCGCTGAAAAGGCATT 61.586 55.000 0.00 0.00 0.00 3.56
1658 5077 2.033194 GTCCCCGTCCGCTGAAAAG 61.033 63.158 0.00 0.00 0.00 2.27
1709 5128 3.557898 CCTGATGGGTACATAGACATGGC 60.558 52.174 0.00 0.00 37.47 4.40
1724 5145 1.211212 TGTGGAGAAGCATCCTGATGG 59.789 52.381 9.07 0.00 40.29 3.51
1740 5161 1.888215 CAGCTGGCTATATGGTGTGG 58.112 55.000 5.57 0.00 0.00 4.17
1743 5164 0.250038 ACGCAGCTGGCTATATGGTG 60.250 55.000 17.12 0.00 41.67 4.17
1744 5165 0.469917 AACGCAGCTGGCTATATGGT 59.530 50.000 17.12 0.00 41.67 3.55
1782 5203 8.729805 AGAGCAAGAAGAATTTACATAAGAGG 57.270 34.615 0.00 0.00 0.00 3.69
1796 5220 7.566760 CTCAGAATAGAGTAGAGCAAGAAGA 57.433 40.000 0.00 0.00 0.00 2.87
1857 5281 8.296713 GCAATGGACCATAACGAATTTATGTAT 58.703 33.333 7.59 0.00 44.03 2.29
1858 5282 7.283354 TGCAATGGACCATAACGAATTTATGTA 59.717 33.333 7.59 0.00 44.03 2.29
1859 5283 6.096141 TGCAATGGACCATAACGAATTTATGT 59.904 34.615 7.59 0.00 44.03 2.29
1860 5284 6.502652 TGCAATGGACCATAACGAATTTATG 58.497 36.000 7.59 0.00 44.81 1.90
1861 5285 6.707440 TGCAATGGACCATAACGAATTTAT 57.293 33.333 7.59 0.00 0.00 1.40
1862 5286 6.071896 TGTTGCAATGGACCATAACGAATTTA 60.072 34.615 7.59 0.00 0.00 1.40
1863 5287 5.167845 GTTGCAATGGACCATAACGAATTT 58.832 37.500 7.59 0.00 0.00 1.82
1864 5288 4.219507 TGTTGCAATGGACCATAACGAATT 59.780 37.500 7.59 0.00 0.00 2.17
1865 5289 3.761218 TGTTGCAATGGACCATAACGAAT 59.239 39.130 7.59 0.00 0.00 3.34
1893 5317 6.664816 TGGATCATAAAGAAGTTGAGGCAATT 59.335 34.615 0.00 0.00 0.00 2.32
2152 5576 8.305317 ACACTAAATACACAAAGTAGGAGACTC 58.695 37.037 0.00 0.00 43.67 3.36
2226 5657 3.958147 ACCCACAAAATCTTCGAAGGTTT 59.042 39.130 26.87 26.87 40.91 3.27
2227 5658 3.562182 ACCCACAAAATCTTCGAAGGTT 58.438 40.909 24.37 21.27 0.00 3.50
2228 5659 3.223674 ACCCACAAAATCTTCGAAGGT 57.776 42.857 24.37 15.92 0.00 3.50
2229 5660 5.186198 AGATACCCACAAAATCTTCGAAGG 58.814 41.667 24.37 10.74 0.00 3.46
2230 5661 6.149474 ACAAGATACCCACAAAATCTTCGAAG 59.851 38.462 19.35 19.35 37.76 3.79
2231 5662 6.001460 ACAAGATACCCACAAAATCTTCGAA 58.999 36.000 0.00 0.00 37.76 3.71
2326 5762 6.172630 GGGATCCATGTTAAAACTGCAAAAT 58.827 36.000 15.23 0.00 0.00 1.82
2398 5834 2.502295 CTTGCCAGAAGAAGTTGCTCT 58.498 47.619 0.00 0.00 0.00 4.09
2496 5934 3.244009 CGTTCTCCACCAGCTGATCATAT 60.244 47.826 17.39 0.00 0.00 1.78
2508 5946 3.637229 TCCTCATTCTATCGTTCTCCACC 59.363 47.826 0.00 0.00 0.00 4.61
2523 5961 3.117738 CCTCCCTGTTAGCATTCCTCATT 60.118 47.826 0.00 0.00 0.00 2.57
2828 6266 7.970102 ACAAACTAGTATCAACCCTACTTCAA 58.030 34.615 0.00 0.00 31.96 2.69
2885 6323 7.760131 ATAAATTTGAAAGCATGATCAACCG 57.240 32.000 0.00 0.00 35.42 4.44
2889 6327 9.878667 ACATGAATAAATTTGAAAGCATGATCA 57.121 25.926 19.08 0.00 36.36 2.92
2913 6352 5.937540 CCTCATAGTGGATTAACAACACACA 59.062 40.000 8.24 0.00 37.58 3.72
2914 6353 5.938125 ACCTCATAGTGGATTAACAACACAC 59.062 40.000 8.24 0.00 37.58 3.82
2955 6394 9.953697 TGGTGAATACAAGTAATACAACAAAAC 57.046 29.630 0.00 0.00 0.00 2.43
2984 6423 9.630098 CACATACTTAAGCTCAACATGATTTTT 57.370 29.630 0.00 0.00 0.00 1.94
2990 6429 5.583854 AGCTCACATACTTAAGCTCAACATG 59.416 40.000 1.29 0.00 41.05 3.21
3001 6440 4.119862 GGCATCGAAAGCTCACATACTTA 58.880 43.478 12.18 0.00 0.00 2.24
3021 6460 2.604914 CACTACTTCACATGTCGATGGC 59.395 50.000 0.00 0.00 33.39 4.40
3060 6499 8.239314 CAGATAAAATGCAAGCTTAGAACAGAA 58.761 33.333 0.00 0.00 0.00 3.02
3135 6574 4.717233 AAATCATGCATTCGGCTAAACA 57.283 36.364 0.00 0.00 45.15 2.83
3240 6680 5.815740 GGAAACGCTCCTTCAACAAGATATA 59.184 40.000 0.00 0.00 41.61 0.86
3257 6697 6.576551 TTTTGAACATTAAAGTGGAAACGC 57.423 33.333 0.00 0.00 42.66 4.84
3310 6879 8.708742 GCATCGTTTAGACAAGCATATATACAA 58.291 33.333 0.00 0.00 0.00 2.41
3312 6881 8.239681 TGCATCGTTTAGACAAGCATATATAC 57.760 34.615 0.00 0.00 32.12 1.47
3329 6898 7.117379 CAGACATATATCACAATCTGCATCGTT 59.883 37.037 0.00 0.00 0.00 3.85
3330 6899 6.589139 CAGACATATATCACAATCTGCATCGT 59.411 38.462 0.00 0.00 0.00 3.73
3331 6900 6.589139 ACAGACATATATCACAATCTGCATCG 59.411 38.462 0.00 0.00 37.65 3.84
3332 6901 7.902387 ACAGACATATATCACAATCTGCATC 57.098 36.000 0.00 0.00 37.65 3.91
3333 6902 7.935210 TGAACAGACATATATCACAATCTGCAT 59.065 33.333 0.00 0.00 37.65 3.96
3335 6904 7.719778 TGAACAGACATATATCACAATCTGC 57.280 36.000 0.00 0.00 37.65 4.26
3336 6905 9.538508 TCTTGAACAGACATATATCACAATCTG 57.461 33.333 0.00 0.00 39.56 2.90
3340 6909 9.112725 CCAATCTTGAACAGACATATATCACAA 57.887 33.333 0.00 0.00 32.83 3.33
3341 6910 7.716560 CCCAATCTTGAACAGACATATATCACA 59.283 37.037 0.00 0.00 32.83 3.58
3342 6911 7.308229 GCCCAATCTTGAACAGACATATATCAC 60.308 40.741 0.00 0.00 32.83 3.06
3343 6912 6.712095 GCCCAATCTTGAACAGACATATATCA 59.288 38.462 0.00 0.00 32.83 2.15
3344 6913 6.939163 AGCCCAATCTTGAACAGACATATATC 59.061 38.462 0.00 0.00 32.83 1.63
3345 6914 6.713903 CAGCCCAATCTTGAACAGACATATAT 59.286 38.462 0.00 0.00 32.83 0.86
3346 6915 6.057533 CAGCCCAATCTTGAACAGACATATA 58.942 40.000 0.00 0.00 32.83 0.86
3347 6916 4.885907 CAGCCCAATCTTGAACAGACATAT 59.114 41.667 0.00 0.00 32.83 1.78
3348 6917 4.019411 TCAGCCCAATCTTGAACAGACATA 60.019 41.667 0.00 0.00 32.83 2.29
3349 6918 3.087031 CAGCCCAATCTTGAACAGACAT 58.913 45.455 0.00 0.00 32.83 3.06
3350 6919 2.106338 TCAGCCCAATCTTGAACAGACA 59.894 45.455 0.00 0.00 32.83 3.41
3351 6920 2.783135 TCAGCCCAATCTTGAACAGAC 58.217 47.619 0.00 0.00 32.83 3.51
3352 6921 3.009363 TCATCAGCCCAATCTTGAACAGA 59.991 43.478 0.00 0.00 35.33 3.41
3353 6922 3.349927 TCATCAGCCCAATCTTGAACAG 58.650 45.455 0.00 0.00 0.00 3.16
3354 6923 3.438216 TCATCAGCCCAATCTTGAACA 57.562 42.857 0.00 0.00 0.00 3.18
3355 6924 4.159135 ACAATCATCAGCCCAATCTTGAAC 59.841 41.667 0.00 0.00 0.00 3.18
3356 6925 4.158949 CACAATCATCAGCCCAATCTTGAA 59.841 41.667 0.00 0.00 0.00 2.69
3357 6926 3.697542 CACAATCATCAGCCCAATCTTGA 59.302 43.478 0.00 0.00 0.00 3.02
3358 6927 3.697542 TCACAATCATCAGCCCAATCTTG 59.302 43.478 0.00 0.00 0.00 3.02
3359 6928 3.972133 TCACAATCATCAGCCCAATCTT 58.028 40.909 0.00 0.00 0.00 2.40
3366 6935 5.561532 CGTTTGGATATCACAATCATCAGCC 60.562 44.000 4.83 0.00 0.00 4.85
3410 6979 1.272769 AGCTTCTTGGTGTCGTAGTCC 59.727 52.381 0.00 0.00 0.00 3.85
3567 7136 3.941483 GGACCGACAGACATGATTCATTT 59.059 43.478 0.00 0.00 0.00 2.32
3583 7152 1.152419 TGTTGAGGACTGGGACCGA 60.152 57.895 0.00 0.00 0.00 4.69
3598 7167 3.764434 TCTTAGGAGATGTTCGAGCTGTT 59.236 43.478 0.00 0.00 0.00 3.16
3646 7215 4.202419 ACATCAGGGCTGTTAGTAAACACA 60.202 41.667 0.00 0.00 40.69 3.72
3678 7250 0.168128 GGCGAAACCAAACCGAGATG 59.832 55.000 0.00 0.00 38.86 2.90
3679 7251 2.551644 GGCGAAACCAAACCGAGAT 58.448 52.632 0.00 0.00 38.86 2.75
3694 7266 2.580470 CTAATCTCACAGCGCGGCG 61.580 63.158 19.62 19.62 0.00 6.46
3699 7271 0.460284 AACGGCCTAATCTCACAGCG 60.460 55.000 0.00 0.00 0.00 5.18
3735 7307 2.995258 GTTAAATGTCGGCCGACTACAA 59.005 45.455 46.72 33.61 44.80 2.41
3744 7316 3.119743 GGTAACAAGGGTTAAATGTCGGC 60.120 47.826 0.00 0.00 40.95 5.54
3745 7317 4.329392 AGGTAACAAGGGTTAAATGTCGG 58.671 43.478 0.00 0.00 40.95 4.79
3846 7421 6.203530 CGGCATGATACTGTTATGACTTCATT 59.796 38.462 0.00 0.00 37.76 2.57
3855 7430 4.141482 ACTTTCCCGGCATGATACTGTTAT 60.141 41.667 0.00 0.00 0.00 1.89
3903 7485 6.036083 CGTATAAAACATGTCCTCACTCAAGG 59.964 42.308 0.00 0.00 37.81 3.61
3907 7489 4.270325 GCCGTATAAAACATGTCCTCACTC 59.730 45.833 0.00 0.00 0.00 3.51
3920 7502 2.486472 TTCCCAACCGCCGTATAAAA 57.514 45.000 0.00 0.00 0.00 1.52
3923 7505 2.713863 ATTTTCCCAACCGCCGTATA 57.286 45.000 0.00 0.00 0.00 1.47
3941 7523 5.478332 GTGTCATCCAAGAGAAAAAGGGAAT 59.522 40.000 0.00 0.00 0.00 3.01
3942 7524 4.827284 GTGTCATCCAAGAGAAAAAGGGAA 59.173 41.667 0.00 0.00 0.00 3.97
3967 7549 8.017418 AGATTCACCACAAACCAAAGATAAAA 57.983 30.769 0.00 0.00 0.00 1.52
4026 7608 6.600822 CCATGTTTCTCAACCTGACTTCATAT 59.399 38.462 0.00 0.00 31.87 1.78
4030 7612 3.503748 CCCATGTTTCTCAACCTGACTTC 59.496 47.826 0.00 0.00 31.87 3.01
4031 7613 3.490348 CCCATGTTTCTCAACCTGACTT 58.510 45.455 0.00 0.00 31.87 3.01
4033 7615 2.162681 CCCCATGTTTCTCAACCTGAC 58.837 52.381 0.00 0.00 31.87 3.51
4034 7616 2.040278 CTCCCCATGTTTCTCAACCTGA 59.960 50.000 0.00 0.00 31.87 3.86
4037 7626 1.839424 CCTCCCCATGTTTCTCAACC 58.161 55.000 0.00 0.00 31.02 3.77
4047 7636 1.976132 ATCGTCAGTGCCTCCCCATG 61.976 60.000 0.00 0.00 0.00 3.66
4073 7662 0.994247 TCTCCATGTCCAGGCACATT 59.006 50.000 2.65 0.00 34.60 2.71
4107 7697 1.148273 TGAGGTGCCGGCAATATCC 59.852 57.895 34.66 27.86 0.00 2.59
4117 7707 1.617947 CCTCCTACAGGTGAGGTGCC 61.618 65.000 0.00 0.00 42.67 5.01
4118 7708 1.901085 CCTCCTACAGGTGAGGTGC 59.099 63.158 0.00 0.00 42.67 5.01
4122 7712 1.967066 CATAGGCCTCCTACAGGTGAG 59.033 57.143 9.68 0.00 45.61 3.51
4123 7713 2.034799 GCATAGGCCTCCTACAGGTGA 61.035 57.143 9.68 0.00 45.61 4.02
4138 7728 7.135467 CCGCTCTATATACAGTACATGCATAG 58.865 42.308 0.00 0.00 0.00 2.23
4147 7737 5.125578 CCTCATTGCCGCTCTATATACAGTA 59.874 44.000 0.00 0.00 0.00 2.74
4200 7790 2.649816 ACCAAAAGGCCAAGGTATCTCT 59.350 45.455 5.01 0.00 31.32 3.10
4207 7797 2.146073 CTCGCACCAAAAGGCCAAGG 62.146 60.000 5.01 2.98 0.00 3.61
4223 7813 3.077556 CAGTCCCCCTCACCCTCG 61.078 72.222 0.00 0.00 0.00 4.63
4300 7890 2.417924 GCAGAGAACAGTCGATCATGGT 60.418 50.000 0.00 0.00 0.00 3.55
4310 7900 7.217200 TCAGTTAATTACTTGCAGAGAACAGT 58.783 34.615 3.37 0.00 33.85 3.55
4328 7918 4.252878 TCATCGCAAAGCTCATCAGTTAA 58.747 39.130 0.00 0.00 0.00 2.01
4340 7930 2.552743 AGCCATCATCATCATCGCAAAG 59.447 45.455 0.00 0.00 0.00 2.77
4365 7961 2.821366 CCAAGCTACAGCCAGCCG 60.821 66.667 0.00 0.00 42.84 5.52
4410 8011 2.153645 TGCACAAGAACGATGCAGAAT 58.846 42.857 0.00 0.00 44.17 2.40
4412 8013 3.304041 TGCACAAGAACGATGCAGA 57.696 47.368 0.00 0.00 44.17 4.26
4415 8016 3.787634 CACAATATGCACAAGAACGATGC 59.212 43.478 0.00 0.00 39.88 3.91
4416 8017 5.163824 ACTCACAATATGCACAAGAACGATG 60.164 40.000 0.00 0.00 0.00 3.84
4417 8018 4.937620 ACTCACAATATGCACAAGAACGAT 59.062 37.500 0.00 0.00 0.00 3.73
4418 8019 4.314961 ACTCACAATATGCACAAGAACGA 58.685 39.130 0.00 0.00 0.00 3.85
4419 8020 4.668576 ACTCACAATATGCACAAGAACG 57.331 40.909 0.00 0.00 0.00 3.95
4420 8021 6.727824 ACTACTCACAATATGCACAAGAAC 57.272 37.500 0.00 0.00 0.00 3.01
4421 8022 8.478066 AGATACTACTCACAATATGCACAAGAA 58.522 33.333 0.00 0.00 0.00 2.52
4425 8030 9.098355 GAAAAGATACTACTCACAATATGCACA 57.902 33.333 0.00 0.00 0.00 4.57
4482 8087 7.201947 CCTCCCAAAAGAACAAAAGAAGAAGAT 60.202 37.037 0.00 0.00 0.00 2.40
4511 8119 1.645034 CAGACGTCTGCCTGGTAATG 58.355 55.000 31.00 6.18 37.15 1.90
4652 8329 3.354089 GCAACTACTCTGCTGCAAAAA 57.646 42.857 3.02 0.00 36.84 1.94
4660 8337 4.065789 ACCTTAACAAGCAACTACTCTGC 58.934 43.478 0.00 0.00 40.24 4.26
4661 8338 7.571428 GCTTAACCTTAACAAGCAACTACTCTG 60.571 40.741 0.89 0.00 43.29 3.35
4662 8339 6.427242 GCTTAACCTTAACAAGCAACTACTCT 59.573 38.462 0.89 0.00 43.29 3.24
4663 8340 6.600350 GCTTAACCTTAACAAGCAACTACTC 58.400 40.000 0.89 0.00 43.29 2.59
4664 8341 6.555812 GCTTAACCTTAACAAGCAACTACT 57.444 37.500 0.89 0.00 43.29 2.57
4674 8351 5.710099 CCCTTTCTCATGCTTAACCTTAACA 59.290 40.000 0.00 0.00 0.00 2.41
4715 8395 0.919300 CTCTGTCGTCATGTGATGCG 59.081 55.000 0.00 0.00 0.00 4.73
4856 8950 0.458197 CACGTACGTTAATGCCGGGA 60.458 55.000 20.23 0.00 0.00 5.14
4860 8959 0.246989 CGTGCACGTACGTTAATGCC 60.247 55.000 30.50 11.63 39.13 4.40
4903 9002 7.162761 TGCATCCAGATTCATTGATTGTTTTT 58.837 30.769 0.00 0.00 0.00 1.94
4936 9036 3.366883 CCGAGCGGAAAATCAAATCCAAA 60.367 43.478 2.00 0.00 37.50 3.28
4943 9043 0.886938 TGTGCCGAGCGGAAAATCAA 60.887 50.000 13.94 0.00 37.50 2.57
4944 9044 1.302112 TGTGCCGAGCGGAAAATCA 60.302 52.632 13.94 0.00 37.50 2.57
4945 9045 1.134694 GTGTGCCGAGCGGAAAATC 59.865 57.895 13.94 0.00 37.50 2.17
4946 9046 2.677003 CGTGTGCCGAGCGGAAAAT 61.677 57.895 13.94 0.00 39.56 1.82
4947 9047 3.342627 CGTGTGCCGAGCGGAAAA 61.343 61.111 13.94 0.00 39.56 2.29
4965 9077 1.204062 CACGTTCATTGCGCGAACT 59.796 52.632 12.10 0.00 40.50 3.01
4966 9078 2.417553 GCACGTTCATTGCGCGAAC 61.418 57.895 12.10 14.39 39.50 3.95
4968 9080 3.041351 AGCACGTTCATTGCGCGA 61.041 55.556 12.10 0.00 45.15 5.87
4969 9081 2.221704 TACAGCACGTTCATTGCGCG 62.222 55.000 0.00 0.00 45.15 6.86
5036 9149 6.942976 TCTGTAATCCCACGTAGAAAAAGAT 58.057 36.000 0.00 0.00 0.00 2.40
5059 9176 5.841957 ACCAGCAATCATAAATCCACTTC 57.158 39.130 0.00 0.00 0.00 3.01
5066 9183 5.305128 CCACCCATAACCAGCAATCATAAAT 59.695 40.000 0.00 0.00 0.00 1.40
5068 9185 4.214310 CCACCCATAACCAGCAATCATAA 58.786 43.478 0.00 0.00 0.00 1.90
5072 9189 1.402787 CCCACCCATAACCAGCAATC 58.597 55.000 0.00 0.00 0.00 2.67
5078 9195 1.498576 CATCATCCCCACCCATAACCA 59.501 52.381 0.00 0.00 0.00 3.67
5091 9208 3.026694 CCCTTTTGTTCCTCCATCATCC 58.973 50.000 0.00 0.00 0.00 3.51
5109 9227 0.251608 CCAAAACGACCCCATTCCCT 60.252 55.000 0.00 0.00 0.00 4.20
5116 9234 0.251430 TTCCCATCCAAAACGACCCC 60.251 55.000 0.00 0.00 0.00 4.95
5122 9241 1.069358 TGCGGTTTTCCCATCCAAAAC 59.931 47.619 0.00 0.00 41.23 2.43
5130 9249 2.037871 GCTCTTTGCGGTTTTCCCA 58.962 52.632 0.00 0.00 36.42 4.37
5153 9272 2.647299 TGAATCAAAAGGAGGCCCTACA 59.353 45.455 0.00 0.00 43.48 2.74
5213 9350 3.366052 TCCTGGGCTTCCATAAGAAAC 57.634 47.619 0.00 0.00 40.27 2.78
5229 9366 3.316308 GGAATTTGATCACCCGATTCCTG 59.684 47.826 21.06 0.00 41.48 3.86
5230 9367 3.203040 AGGAATTTGATCACCCGATTCCT 59.797 43.478 23.32 23.32 46.87 3.36
5231 9368 3.555966 AGGAATTTGATCACCCGATTCC 58.444 45.455 20.92 20.92 43.80 3.01
5232 9369 5.182001 CCATAGGAATTTGATCACCCGATTC 59.818 44.000 0.00 3.58 29.66 2.52
5233 9370 5.072741 CCATAGGAATTTGATCACCCGATT 58.927 41.667 0.00 0.00 29.66 3.34
5234 9371 4.350816 TCCATAGGAATTTGATCACCCGAT 59.649 41.667 0.00 0.00 33.31 4.18
5235 9372 3.714280 TCCATAGGAATTTGATCACCCGA 59.286 43.478 0.00 0.00 0.00 5.14
5236 9373 4.085357 TCCATAGGAATTTGATCACCCG 57.915 45.455 0.00 0.00 0.00 5.28
5308 9445 5.833131 GGGCAAAGAATGTATTCCATAGGAA 59.167 40.000 0.30 0.30 46.39 3.36
5309 9446 5.134339 AGGGCAAAGAATGTATTCCATAGGA 59.866 40.000 1.16 0.00 37.51 2.94
5310 9447 5.388654 AGGGCAAAGAATGTATTCCATAGG 58.611 41.667 1.16 0.00 37.51 2.57
5311 9448 6.547141 TGAAGGGCAAAGAATGTATTCCATAG 59.453 38.462 1.16 0.00 37.51 2.23
5312 9449 6.430864 TGAAGGGCAAAGAATGTATTCCATA 58.569 36.000 1.16 0.00 37.51 2.74
5313 9450 5.271598 TGAAGGGCAAAGAATGTATTCCAT 58.728 37.500 1.16 0.00 37.51 3.41
5314 9451 4.671831 TGAAGGGCAAAGAATGTATTCCA 58.328 39.130 1.16 0.00 37.51 3.53
5315 9452 5.859205 ATGAAGGGCAAAGAATGTATTCC 57.141 39.130 1.16 0.00 37.51 3.01
5316 9453 6.866480 TGAATGAAGGGCAAAGAATGTATTC 58.134 36.000 0.00 0.00 37.06 1.75
5317 9454 6.438425 ACTGAATGAAGGGCAAAGAATGTATT 59.562 34.615 0.00 0.00 0.00 1.89
5318 9455 5.954150 ACTGAATGAAGGGCAAAGAATGTAT 59.046 36.000 0.00 0.00 0.00 2.29
5319 9456 5.324409 ACTGAATGAAGGGCAAAGAATGTA 58.676 37.500 0.00 0.00 0.00 2.29
5320 9457 4.154942 ACTGAATGAAGGGCAAAGAATGT 58.845 39.130 0.00 0.00 0.00 2.71
5321 9458 4.796038 ACTGAATGAAGGGCAAAGAATG 57.204 40.909 0.00 0.00 0.00 2.67
5322 9459 4.952335 CCTACTGAATGAAGGGCAAAGAAT 59.048 41.667 0.00 0.00 0.00 2.40
5323 9460 4.042809 TCCTACTGAATGAAGGGCAAAGAA 59.957 41.667 0.00 0.00 0.00 2.52
5324 9461 3.587061 TCCTACTGAATGAAGGGCAAAGA 59.413 43.478 0.00 0.00 0.00 2.52
5325 9462 3.955471 TCCTACTGAATGAAGGGCAAAG 58.045 45.455 0.00 0.00 0.00 2.77
5326 9463 4.380843 TTCCTACTGAATGAAGGGCAAA 57.619 40.909 0.00 0.00 0.00 3.68
5327 9464 4.591321 ATTCCTACTGAATGAAGGGCAA 57.409 40.909 0.00 0.00 42.18 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.