Multiple sequence alignment - TraesCS2D01G077000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G077000 chr2D 100.000 4475 0 0 1 4475 32805846 32810320 0.000000e+00 8264.0
1 TraesCS2D01G077000 chr2D 91.322 242 12 1 4243 4475 348973610 348973851 5.580000e-84 322.0
2 TraesCS2D01G077000 chr2B 89.731 4090 272 59 1 4010 54552388 54556409 0.000000e+00 5090.0
3 TraesCS2D01G077000 chr2A 90.763 2977 187 40 1 2916 36055028 36057977 0.000000e+00 3893.0
4 TraesCS2D01G077000 chr2A 86.475 1220 77 32 2950 4130 36057977 36059147 0.000000e+00 1258.0
5 TraesCS2D01G077000 chr2A 91.114 799 55 5 1251 2044 44039618 44038831 0.000000e+00 1068.0
6 TraesCS2D01G077000 chr2A 88.825 349 20 12 3830 4165 44032701 44032359 1.160000e-110 411.0
7 TraesCS2D01G077000 chr2A 90.726 248 16 3 3584 3830 44037111 44036870 1.550000e-84 324.0
8 TraesCS2D01G077000 chr7B 95.021 241 3 1 4244 4475 73129483 73129723 1.970000e-98 370.0
9 TraesCS2D01G077000 chr7B 81.529 157 12 7 4257 4403 465107728 465107579 3.660000e-21 113.0
10 TraesCS2D01G077000 chr6A 89.119 193 10 5 4244 4427 531708671 531708481 3.480000e-56 230.0
11 TraesCS2D01G077000 chr6A 88.889 54 5 1 4011 4063 592540978 592540925 1.040000e-06 65.8
12 TraesCS2D01G077000 chr6D 84.066 182 18 4 4244 4415 118984132 118984312 9.960000e-37 165.0
13 TraesCS2D01G077000 chr6B 96.386 83 2 1 4239 4320 410127074 410127156 7.810000e-28 135.0
14 TraesCS2D01G077000 chr6B 100.000 70 0 0 4406 4475 410127159 410127228 3.630000e-26 130.0
15 TraesCS2D01G077000 chr6B 86.747 83 9 2 4243 4324 658561948 658561867 1.710000e-14 91.6
16 TraesCS2D01G077000 chr1B 85.263 95 14 0 357 451 561547848 561547754 1.020000e-16 99.0
17 TraesCS2D01G077000 chr1B 84.211 95 15 0 357 451 561546774 561546680 4.770000e-15 93.5
18 TraesCS2D01G077000 chr5B 94.444 36 2 0 810 845 314800312 314800347 6.250000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G077000 chr2D 32805846 32810320 4474 False 8264.0 8264 100.000 1 4475 1 chr2D.!!$F1 4474
1 TraesCS2D01G077000 chr2B 54552388 54556409 4021 False 5090.0 5090 89.731 1 4010 1 chr2B.!!$F1 4009
2 TraesCS2D01G077000 chr2A 36055028 36059147 4119 False 2575.5 3893 88.619 1 4130 2 chr2A.!!$F1 4129
3 TraesCS2D01G077000 chr2A 44036870 44039618 2748 True 696.0 1068 90.920 1251 3830 2 chr2A.!!$R2 2579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
977 979 0.034477 AACCCAAAGCCCATACCGAG 60.034 55.0 0.00 0.0 0.00 4.63 F
1026 1028 0.325272 AGAAAGAAGGAGGGGAACGC 59.675 55.0 0.00 0.0 43.76 4.84 F
2119 2143 0.753262 ACGCGATCCTATGAGGCTTT 59.247 50.0 15.93 0.0 34.61 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2965 3634 0.037326 CTTCCGTACCTTCAGCAGCA 60.037 55.0 0.0 0.0 0.00 4.41 R
2966 3635 0.246635 TCTTCCGTACCTTCAGCAGC 59.753 55.0 0.0 0.0 0.00 5.25 R
3543 4246 0.033366 ACTCACAGTATGCACGCACA 59.967 50.0 0.0 0.0 42.53 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
206 207 2.901042 GCGGGGTTGAGGAGGTAG 59.099 66.667 0.00 0.00 0.00 3.18
820 821 3.313874 CGCAAGGTGGGAGAGGAT 58.686 61.111 0.00 0.00 31.21 3.24
929 930 0.535780 CCACTGAGCTGGACTGCAAA 60.536 55.000 0.00 0.00 32.30 3.68
943 945 1.676967 GCAAAGGGAGCCAGTGGAG 60.677 63.158 15.20 0.00 0.00 3.86
974 976 1.035385 CCGAACCCAAAGCCCATACC 61.035 60.000 0.00 0.00 0.00 2.73
975 977 1.373590 CGAACCCAAAGCCCATACCG 61.374 60.000 0.00 0.00 0.00 4.02
976 978 0.034863 GAACCCAAAGCCCATACCGA 60.035 55.000 0.00 0.00 0.00 4.69
977 979 0.034477 AACCCAAAGCCCATACCGAG 60.034 55.000 0.00 0.00 0.00 4.63
978 980 0.912487 ACCCAAAGCCCATACCGAGA 60.912 55.000 0.00 0.00 0.00 4.04
979 981 0.463833 CCCAAAGCCCATACCGAGAC 60.464 60.000 0.00 0.00 0.00 3.36
992 994 2.607750 GAGACCCAGGCCCAGACA 60.608 66.667 0.00 0.00 0.00 3.41
1008 1010 0.890996 GACAGAGCCCAACCCAACAG 60.891 60.000 0.00 0.00 0.00 3.16
1015 1017 1.341209 GCCCAACCCAACAGAAAGAAG 59.659 52.381 0.00 0.00 0.00 2.85
1016 1018 1.963515 CCCAACCCAACAGAAAGAAGG 59.036 52.381 0.00 0.00 0.00 3.46
1017 1019 2.424234 CCCAACCCAACAGAAAGAAGGA 60.424 50.000 0.00 0.00 0.00 3.36
1018 1020 2.887152 CCAACCCAACAGAAAGAAGGAG 59.113 50.000 0.00 0.00 0.00 3.69
1023 1025 2.108250 CCAACAGAAAGAAGGAGGGGAA 59.892 50.000 0.00 0.00 0.00 3.97
1026 1028 0.325272 AGAAAGAAGGAGGGGAACGC 59.675 55.000 0.00 0.00 43.76 4.84
1322 1332 4.344865 GCCTGCTTCCCCGACCAA 62.345 66.667 0.00 0.00 0.00 3.67
1481 1491 3.659092 CAGGGCACGCGCAAGAAA 61.659 61.111 5.73 0.00 41.24 2.52
1547 1559 5.251468 TCCAGATCTCCTTGAGAATTTCCAA 59.749 40.000 0.00 0.00 42.27 3.53
1613 1633 6.187727 ACTCTGGGTTCTGATCTTGTTTTA 57.812 37.500 0.00 0.00 0.00 1.52
1784 1805 2.126071 CGGTGCGAACGAGGATGT 60.126 61.111 0.00 0.00 0.00 3.06
1786 1807 1.787847 GGTGCGAACGAGGATGTTG 59.212 57.895 0.00 0.00 30.75 3.33
1795 1819 1.202758 ACGAGGATGTTGGTGCTCAAA 60.203 47.619 0.00 0.00 36.48 2.69
1800 1824 3.256631 AGGATGTTGGTGCTCAAAATGAC 59.743 43.478 1.66 0.00 33.62 3.06
1805 1829 2.948979 TTGGTGCTCAAAATGACGAAGT 59.051 40.909 0.00 0.00 36.17 3.01
1832 1856 4.663592 TCTTGGTAGGGAAAAAGGAGAAGT 59.336 41.667 0.00 0.00 0.00 3.01
1845 1869 2.092323 GGAGAAGTTAACCATGCCCAC 58.908 52.381 0.88 0.00 0.00 4.61
1853 1877 0.916086 AACCATGCCCACGAGGATTA 59.084 50.000 0.00 0.00 38.24 1.75
1854 1878 1.140312 ACCATGCCCACGAGGATTAT 58.860 50.000 0.00 0.00 38.24 1.28
1870 1894 5.185454 AGGATTATGCTCGACATCAACAAA 58.815 37.500 4.15 0.00 40.38 2.83
1887 1911 4.813296 ACAAAAGCCAGTAGAAAGAACG 57.187 40.909 0.00 0.00 0.00 3.95
1960 1984 1.203523 AGGAGCAAGCTACGTCTTCTG 59.796 52.381 0.00 0.00 30.67 3.02
1961 1985 1.634702 GAGCAAGCTACGTCTTCTGG 58.365 55.000 0.00 0.00 0.00 3.86
1971 1995 1.004918 GTCTTCTGGTGTCACCGGG 60.005 63.158 27.30 17.42 44.85 5.73
2004 2028 1.194781 ACCGTGACAAGAGCCATCCT 61.195 55.000 0.00 0.00 0.00 3.24
2010 2034 2.271800 GACAAGAGCCATCCTGTAACG 58.728 52.381 0.00 0.00 30.03 3.18
2023 2047 2.618053 CTGTAACGGGTTCTAAGCCTG 58.382 52.381 9.12 5.55 44.27 4.85
2103 2127 3.847037 TTGACGTTCTGTTAAAGACGC 57.153 42.857 0.00 0.00 34.68 5.19
2110 2134 4.418392 GTTCTGTTAAAGACGCGATCCTA 58.582 43.478 15.93 0.00 33.46 2.94
2111 2135 4.913335 TCTGTTAAAGACGCGATCCTAT 57.087 40.909 15.93 0.00 0.00 2.57
2119 2143 0.753262 ACGCGATCCTATGAGGCTTT 59.247 50.000 15.93 0.00 34.61 3.51
2122 2146 2.565841 GCGATCCTATGAGGCTTTTGT 58.434 47.619 0.00 0.00 34.61 2.83
2125 2149 4.693283 CGATCCTATGAGGCTTTTGTGTA 58.307 43.478 0.00 0.00 34.61 2.90
2141 2393 7.326063 GCTTTTGTGTATTTAAATTGCTCTCGT 59.674 33.333 5.91 0.00 0.00 4.18
2142 2394 9.820229 CTTTTGTGTATTTAAATTGCTCTCGTA 57.180 29.630 5.91 0.00 0.00 3.43
2146 2398 8.761497 TGTGTATTTAAATTGCTCTCGTATAGC 58.239 33.333 5.91 0.00 40.50 2.97
2148 2400 8.148351 TGTATTTAAATTGCTCTCGTATAGCCT 58.852 33.333 5.91 0.00 39.30 4.58
2155 2407 9.726438 AAATTGCTCTCGTATAGCCTATAAAAT 57.274 29.630 0.00 0.00 39.30 1.82
2157 2409 6.552629 TGCTCTCGTATAGCCTATAAAATCG 58.447 40.000 0.00 0.00 39.30 3.34
2158 2410 6.150641 TGCTCTCGTATAGCCTATAAAATCGT 59.849 38.462 0.00 0.00 39.30 3.73
2159 2411 6.469595 GCTCTCGTATAGCCTATAAAATCGTG 59.530 42.308 0.00 0.00 33.73 4.35
2173 2425 2.322355 ATCGTGCAGCTTCTAGCAAT 57.678 45.000 0.00 0.00 45.56 3.56
2178 2430 3.610114 CGTGCAGCTTCTAGCAATTTTGT 60.610 43.478 0.00 0.00 45.56 2.83
2219 2479 7.319142 GCTTTCTTAGCTCTTCATCTTTGAT 57.681 36.000 0.00 0.00 46.77 2.57
2222 2482 7.840342 TTCTTAGCTCTTCATCTTTGATGAC 57.160 36.000 9.46 0.00 33.73 3.06
2225 2485 7.879677 TCTTAGCTCTTCATCTTTGATGACAAA 59.120 33.333 9.46 0.00 42.66 2.83
2265 2527 7.928307 AGCATAAATCTTGTCATGTTACACT 57.072 32.000 0.00 0.00 0.00 3.55
2274 2536 6.371548 TCTTGTCATGTTACACTTGGATAAGC 59.628 38.462 0.00 0.00 37.43 3.09
2276 2538 5.643348 TGTCATGTTACACTTGGATAAGCTG 59.357 40.000 0.00 0.00 37.43 4.24
2288 2551 5.708736 TGGATAAGCTGGATTTACAGGAA 57.291 39.130 0.00 0.00 38.90 3.36
2293 2556 8.157476 GGATAAGCTGGATTTACAGGAAGAATA 58.843 37.037 0.00 0.00 38.90 1.75
2298 2561 7.337942 AGCTGGATTTACAGGAAGAATAAGTTG 59.662 37.037 0.00 0.00 38.90 3.16
2325 2588 4.877378 ATGTTCTGGTTGCATGATGTTT 57.123 36.364 0.00 0.00 0.00 2.83
2329 2592 3.760738 TCTGGTTGCATGATGTTTGGTA 58.239 40.909 0.00 0.00 0.00 3.25
2331 2594 4.586421 TCTGGTTGCATGATGTTTGGTAAA 59.414 37.500 0.00 0.00 0.00 2.01
2333 2596 5.862845 TGGTTGCATGATGTTTGGTAAAAT 58.137 33.333 0.00 0.00 0.00 1.82
2334 2597 6.294473 TGGTTGCATGATGTTTGGTAAAATT 58.706 32.000 0.00 0.00 0.00 1.82
2335 2598 6.204301 TGGTTGCATGATGTTTGGTAAAATTG 59.796 34.615 0.00 0.00 0.00 2.32
2336 2599 6.204495 GGTTGCATGATGTTTGGTAAAATTGT 59.796 34.615 0.00 0.00 0.00 2.71
2338 2601 7.187244 TGCATGATGTTTGGTAAAATTGTTG 57.813 32.000 0.00 0.00 0.00 3.33
2344 2607 7.711339 TGATGTTTGGTAAAATTGTTGGTTACC 59.289 33.333 8.49 8.49 44.70 2.85
2347 2610 7.343833 TGTTTGGTAAAATTGTTGGTTACCCTA 59.656 33.333 11.68 0.84 44.11 3.53
2354 2617 8.536340 AAAATTGTTGGTTACCCTAAACACTA 57.464 30.769 5.44 0.00 34.60 2.74
2360 2623 7.879160 TGTTGGTTACCCTAAACACTATGTTAG 59.121 37.037 0.00 0.00 40.14 2.34
2380 2644 6.150976 TGTTAGTTGTCATGCTCCTATTTTGG 59.849 38.462 0.00 0.00 0.00 3.28
2383 2647 4.299586 TGTCATGCTCCTATTTTGGTGA 57.700 40.909 0.00 0.00 0.00 4.02
2384 2648 4.009675 TGTCATGCTCCTATTTTGGTGAC 58.990 43.478 0.00 0.00 36.26 3.67
2387 2651 3.806949 TGCTCCTATTTTGGTGACCTT 57.193 42.857 2.11 0.00 0.00 3.50
2388 2652 3.420893 TGCTCCTATTTTGGTGACCTTG 58.579 45.455 2.11 0.00 0.00 3.61
2389 2653 3.181434 TGCTCCTATTTTGGTGACCTTGT 60.181 43.478 2.11 0.00 0.00 3.16
2392 2656 5.255397 TCCTATTTTGGTGACCTTGTCAT 57.745 39.130 2.11 0.00 44.63 3.06
2393 2657 5.009631 TCCTATTTTGGTGACCTTGTCATG 58.990 41.667 2.11 0.00 44.63 3.07
2394 2658 4.766891 CCTATTTTGGTGACCTTGTCATGT 59.233 41.667 2.11 0.00 44.63 3.21
2395 2659 5.243730 CCTATTTTGGTGACCTTGTCATGTT 59.756 40.000 2.11 0.00 44.63 2.71
2431 2738 9.462606 AAAGTAAACCCCTGATATTGTTAGAAG 57.537 33.333 0.00 0.00 0.00 2.85
2435 2742 7.707467 AACCCCTGATATTGTTAGAAGGTAT 57.293 36.000 0.00 0.00 0.00 2.73
2472 2779 7.385267 ACTACATAAATGCCTGATCTCAGATC 58.615 38.462 7.83 7.83 46.59 2.75
2511 2818 3.061006 CACAATCTGCAACAAAAACGCTC 60.061 43.478 0.00 0.00 0.00 5.03
2527 2856 1.265568 GCTCGCTGAAAATGCACATG 58.734 50.000 0.00 0.00 0.00 3.21
2529 2858 2.512885 CTCGCTGAAAATGCACATGTC 58.487 47.619 0.00 0.00 0.00 3.06
2530 2859 2.153645 TCGCTGAAAATGCACATGTCT 58.846 42.857 0.00 0.00 0.00 3.41
2531 2860 2.095617 TCGCTGAAAATGCACATGTCTG 60.096 45.455 0.00 0.00 0.00 3.51
2532 2861 2.602878 GCTGAAAATGCACATGTCTGG 58.397 47.619 0.00 0.00 0.00 3.86
2533 2862 2.029649 GCTGAAAATGCACATGTCTGGT 60.030 45.455 0.00 0.00 0.00 4.00
2534 2863 3.553508 GCTGAAAATGCACATGTCTGGTT 60.554 43.478 0.00 0.00 0.00 3.67
2535 2864 3.979948 TGAAAATGCACATGTCTGGTTG 58.020 40.909 0.00 0.00 0.00 3.77
2536 2865 3.384146 TGAAAATGCACATGTCTGGTTGT 59.616 39.130 0.00 0.00 0.00 3.32
2537 2866 4.141981 TGAAAATGCACATGTCTGGTTGTT 60.142 37.500 0.00 0.00 0.00 2.83
2538 2867 3.374220 AATGCACATGTCTGGTTGTTG 57.626 42.857 0.00 0.00 0.00 3.33
2539 2868 2.049888 TGCACATGTCTGGTTGTTGA 57.950 45.000 0.00 0.00 0.00 3.18
2540 2869 1.675483 TGCACATGTCTGGTTGTTGAC 59.325 47.619 0.00 0.00 0.00 3.18
2541 2870 1.949525 GCACATGTCTGGTTGTTGACT 59.050 47.619 0.00 0.00 34.57 3.41
2542 2871 3.138304 GCACATGTCTGGTTGTTGACTA 58.862 45.455 0.00 0.00 34.57 2.59
2543 2872 3.753272 GCACATGTCTGGTTGTTGACTAT 59.247 43.478 0.00 0.00 34.57 2.12
2544 2873 4.142816 GCACATGTCTGGTTGTTGACTATC 60.143 45.833 0.00 0.00 34.57 2.08
2584 2913 5.065914 TGCTAGCAGACACAAAGAAAATCT 58.934 37.500 14.93 0.00 0.00 2.40
2585 2914 5.532406 TGCTAGCAGACACAAAGAAAATCTT 59.468 36.000 14.93 0.00 38.59 2.40
2586 2915 6.710295 TGCTAGCAGACACAAAGAAAATCTTA 59.290 34.615 14.93 0.00 35.27 2.10
2589 2918 9.766277 CTAGCAGACACAAAGAAAATCTTATTC 57.234 33.333 0.00 0.00 35.27 1.75
2597 2926 9.708222 CACAAAGAAAATCTTATTCAGTATCGG 57.292 33.333 0.00 0.00 35.27 4.18
2918 3585 2.810274 CACTTCTTCCTGATGGTGTGTG 59.190 50.000 0.00 0.00 34.23 3.82
2919 3586 2.439507 ACTTCTTCCTGATGGTGTGTGT 59.560 45.455 0.00 0.00 34.23 3.72
2920 3587 3.117888 ACTTCTTCCTGATGGTGTGTGTT 60.118 43.478 0.00 0.00 34.23 3.32
2921 3588 3.126001 TCTTCCTGATGGTGTGTGTTC 57.874 47.619 0.00 0.00 34.23 3.18
2922 3589 2.437651 TCTTCCTGATGGTGTGTGTTCA 59.562 45.455 0.00 0.00 34.23 3.18
2923 3590 3.072915 TCTTCCTGATGGTGTGTGTTCAT 59.927 43.478 0.00 0.00 34.23 2.57
2924 3591 3.507162 TCCTGATGGTGTGTGTTCATT 57.493 42.857 0.00 0.00 34.23 2.57
2926 3593 3.820467 TCCTGATGGTGTGTGTTCATTTC 59.180 43.478 0.00 0.00 34.23 2.17
2927 3594 3.822735 CCTGATGGTGTGTGTTCATTTCT 59.177 43.478 0.00 0.00 0.00 2.52
2928 3595 4.279169 CCTGATGGTGTGTGTTCATTTCTT 59.721 41.667 0.00 0.00 0.00 2.52
2933 3602 8.420222 TGATGGTGTGTGTTCATTTCTTTATTT 58.580 29.630 0.00 0.00 0.00 1.40
2934 3603 9.906660 GATGGTGTGTGTTCATTTCTTTATTTA 57.093 29.630 0.00 0.00 0.00 1.40
2964 3633 9.881649 ATTCATTCATATATATTCGTCTGCTGT 57.118 29.630 0.00 0.00 0.00 4.40
2965 3634 9.710900 TTCATTCATATATATTCGTCTGCTGTT 57.289 29.630 0.00 0.00 0.00 3.16
2966 3635 9.143631 TCATTCATATATATTCGTCTGCTGTTG 57.856 33.333 0.00 0.00 0.00 3.33
3009 3678 3.760684 GCAACTGGAAGGACATCAAGATT 59.239 43.478 0.00 0.00 39.30 2.40
3018 3687 2.576615 GACATCAAGATTGCCTACCCC 58.423 52.381 0.00 0.00 0.00 4.95
3046 3715 4.082408 TGTTTCAAGACAGATCGACGGTAT 60.082 41.667 0.00 0.00 0.00 2.73
3051 3720 4.750952 AGACAGATCGACGGTATGTATG 57.249 45.455 8.60 0.00 0.00 2.39
3052 3721 4.135306 AGACAGATCGACGGTATGTATGT 58.865 43.478 8.60 0.00 0.00 2.29
3053 3722 5.303165 AGACAGATCGACGGTATGTATGTA 58.697 41.667 8.60 0.00 0.00 2.29
3056 3725 6.609533 ACAGATCGACGGTATGTATGTATTC 58.390 40.000 6.59 0.00 0.00 1.75
3057 3726 6.028368 CAGATCGACGGTATGTATGTATTCC 58.972 44.000 0.00 0.00 0.00 3.01
3058 3727 4.408993 TCGACGGTATGTATGTATTCCG 57.591 45.455 0.00 0.00 43.82 4.30
3059 3728 3.189080 TCGACGGTATGTATGTATTCCGG 59.811 47.826 0.00 0.00 42.91 5.14
3061 3730 4.557296 CGACGGTATGTATGTATTCCGGTT 60.557 45.833 0.00 0.00 42.91 4.44
3062 3731 5.280654 ACGGTATGTATGTATTCCGGTTT 57.719 39.130 0.00 0.00 42.91 3.27
3063 3732 5.291971 ACGGTATGTATGTATTCCGGTTTC 58.708 41.667 0.00 0.00 42.91 2.78
3064 3733 5.069516 ACGGTATGTATGTATTCCGGTTTCT 59.930 40.000 0.00 0.00 42.91 2.52
3065 3734 5.404366 CGGTATGTATGTATTCCGGTTTCTG 59.596 44.000 0.00 0.00 37.35 3.02
3066 3735 5.178809 GGTATGTATGTATTCCGGTTTCTGC 59.821 44.000 0.00 0.00 0.00 4.26
3067 3736 4.209307 TGTATGTATTCCGGTTTCTGCA 57.791 40.909 0.00 0.00 0.00 4.41
3068 3737 3.936453 TGTATGTATTCCGGTTTCTGCAC 59.064 43.478 0.00 0.00 0.00 4.57
3069 3738 2.552599 TGTATTCCGGTTTCTGCACA 57.447 45.000 0.00 0.00 0.00 4.57
3070 3739 3.066291 TGTATTCCGGTTTCTGCACAT 57.934 42.857 0.00 0.00 0.00 3.21
3071 3740 2.746904 TGTATTCCGGTTTCTGCACATG 59.253 45.455 0.00 0.00 0.00 3.21
3072 3741 1.176527 ATTCCGGTTTCTGCACATGG 58.823 50.000 0.00 0.00 0.00 3.66
3073 3742 1.523154 TTCCGGTTTCTGCACATGGC 61.523 55.000 0.00 0.00 45.13 4.40
3074 3743 2.568090 CGGTTTCTGCACATGGCC 59.432 61.111 0.00 0.00 43.89 5.36
3075 3744 1.973281 CGGTTTCTGCACATGGCCT 60.973 57.895 3.32 0.00 43.89 5.19
3076 3745 1.526575 CGGTTTCTGCACATGGCCTT 61.527 55.000 3.32 0.00 43.89 4.35
3077 3746 0.681175 GGTTTCTGCACATGGCCTTT 59.319 50.000 3.32 0.00 43.89 3.11
3078 3747 1.337167 GGTTTCTGCACATGGCCTTTC 60.337 52.381 3.32 0.00 43.89 2.62
3079 3748 0.597568 TTTCTGCACATGGCCTTTCG 59.402 50.000 3.32 0.00 43.89 3.46
3080 3749 1.865788 TTCTGCACATGGCCTTTCGC 61.866 55.000 3.32 2.98 43.89 4.70
3081 3750 2.282391 TGCACATGGCCTTTCGCT 60.282 55.556 3.32 0.00 43.89 4.93
3082 3751 1.870055 CTGCACATGGCCTTTCGCTT 61.870 55.000 3.32 0.00 43.89 4.68
3083 3752 1.290009 GCACATGGCCTTTCGCTTT 59.710 52.632 3.32 0.00 37.74 3.51
3084 3753 1.010419 GCACATGGCCTTTCGCTTTG 61.010 55.000 3.32 0.00 37.74 2.77
3085 3754 0.388907 CACATGGCCTTTCGCTTTGG 60.389 55.000 3.32 0.00 37.74 3.28
3111 3802 1.333619 CGGTCTGTCTTTGGGTTTGTG 59.666 52.381 0.00 0.00 0.00 3.33
3130 3821 2.027625 CCACGTCCGAGGCTGAAAC 61.028 63.158 0.00 0.00 0.00 2.78
3135 3826 2.257371 CCGAGGCTGAAACGACGA 59.743 61.111 0.00 0.00 0.00 4.20
3205 3896 1.394917 CACTAACAGCGAATGTGCCTC 59.605 52.381 0.00 0.00 43.00 4.70
3214 3905 1.009829 GAATGTGCCTCGACATGGAC 58.990 55.000 0.00 0.00 36.66 4.02
3217 3908 2.994995 TGCCTCGACATGGACGGT 60.995 61.111 12.97 0.00 0.00 4.83
3223 3914 0.892063 TCGACATGGACGGTCATTCA 59.108 50.000 10.76 0.00 34.97 2.57
3227 3918 0.107508 CATGGACGGTCATTCAGCCT 60.108 55.000 10.76 0.00 0.00 4.58
3228 3919 0.620556 ATGGACGGTCATTCAGCCTT 59.379 50.000 10.76 0.00 0.00 4.35
3302 3999 2.169769 CAAATGGCCCAAAGAGCATGAT 59.830 45.455 0.00 0.00 0.00 2.45
3391 4088 1.623811 GCACCTTCCTCTTGTACAGGA 59.376 52.381 7.53 7.53 38.36 3.86
3438 4135 6.580788 CCATGATCTGATGTTCTCTGTAAGT 58.419 40.000 0.00 0.00 33.76 2.24
3439 4136 7.685398 GCCATGATCTGATGTTCTCTGTAAGTA 60.685 40.741 0.00 0.00 33.76 2.24
3440 4137 8.200120 CCATGATCTGATGTTCTCTGTAAGTAA 58.800 37.037 0.00 0.00 33.76 2.24
3482 4179 8.343366 GGTATGTGATTATGATGATGATGATGC 58.657 37.037 0.00 0.00 0.00 3.91
3483 4180 6.753107 TGTGATTATGATGATGATGATGCC 57.247 37.500 0.00 0.00 0.00 4.40
3484 4181 6.481643 TGTGATTATGATGATGATGATGCCT 58.518 36.000 0.00 0.00 0.00 4.75
3485 4182 6.374333 TGTGATTATGATGATGATGATGCCTG 59.626 38.462 0.00 0.00 0.00 4.85
3487 4184 1.905637 TGATGATGATGATGCCTGGC 58.094 50.000 12.87 12.87 0.00 4.85
3488 4185 1.423921 TGATGATGATGATGCCTGGCT 59.576 47.619 21.03 5.22 0.00 4.75
3491 4188 0.952280 GATGATGATGCCTGGCTGTG 59.048 55.000 21.03 0.00 0.00 3.66
3518 4215 1.471684 GAGCCTGTGCCATTCTTCTTG 59.528 52.381 0.00 0.00 38.69 3.02
3543 4246 4.163649 TCTTCTGTCTGCATCATCCATCTT 59.836 41.667 0.00 0.00 0.00 2.40
3544 4247 3.805207 TCTGTCTGCATCATCCATCTTG 58.195 45.455 0.00 0.00 0.00 3.02
3545 4248 3.199289 TCTGTCTGCATCATCCATCTTGT 59.801 43.478 0.00 0.00 0.00 3.16
3546 4249 3.275999 TGTCTGCATCATCCATCTTGTG 58.724 45.455 0.00 0.00 0.00 3.33
3573 4276 5.352293 TGCATACTGTGAGTAGCATCTTTTG 59.648 40.000 0.00 0.00 33.66 2.44
3606 4337 2.104622 TGTCACTGATGCCAAGTCTTGA 59.895 45.455 14.42 0.00 0.00 3.02
3667 4399 0.036765 GGTGTCGGTGTGGCAGATTA 60.037 55.000 0.00 0.00 0.00 1.75
3748 4480 4.433615 ACGTGGATGCAGATTAGTAGTTG 58.566 43.478 0.00 0.00 0.00 3.16
3785 4518 0.464013 GCATGGCATGAGAGAGCTGT 60.464 55.000 30.69 0.00 0.00 4.40
3807 4546 3.255888 TGGACGCATGTGATCTATACCTC 59.744 47.826 14.43 0.00 0.00 3.85
3960 4710 4.438200 GCTTTATGTTTGTATGTGGGTCCG 60.438 45.833 0.00 0.00 0.00 4.79
3967 4717 3.260475 TGTATGTGGGTCCGAAATCAG 57.740 47.619 0.00 0.00 0.00 2.90
3978 4728 4.567159 GGTCCGAAATCAGTGATTCTGTAC 59.433 45.833 18.52 13.73 43.97 2.90
4014 4764 3.242543 GCGTGGCTGATTCTGTAATGAAG 60.243 47.826 0.00 0.00 0.00 3.02
4059 4811 8.635765 TTGATTAATATATGGGAGGTGCTTTC 57.364 34.615 0.00 0.00 0.00 2.62
4121 4876 1.200020 GGATTTTCTGCTTGGGACACG 59.800 52.381 0.00 0.00 39.29 4.49
4124 4879 1.305201 TTTCTGCTTGGGACACGTTC 58.695 50.000 0.00 0.00 39.29 3.95
4126 4881 2.954753 CTGCTTGGGACACGTTCGC 61.955 63.158 0.00 0.00 39.29 4.70
4127 4882 2.970324 GCTTGGGACACGTTCGCA 60.970 61.111 11.47 11.47 45.09 5.10
4131 4886 2.478989 TGGGACACGTTCGCAAAAA 58.521 47.368 12.59 0.00 43.87 1.94
4158 4913 3.770625 GCTGGGTAGCCTCTTCTTC 57.229 57.895 13.11 0.00 44.33 2.87
4159 4914 0.179097 GCTGGGTAGCCTCTTCTTCG 60.179 60.000 13.11 0.00 44.33 3.79
4160 4915 1.187087 CTGGGTAGCCTCTTCTTCGT 58.813 55.000 13.11 0.00 0.00 3.85
4161 4916 1.135333 CTGGGTAGCCTCTTCTTCGTC 59.865 57.143 13.11 0.00 0.00 4.20
4162 4917 1.183549 GGGTAGCCTCTTCTTCGTCA 58.816 55.000 2.95 0.00 0.00 4.35
4163 4918 1.757699 GGGTAGCCTCTTCTTCGTCAT 59.242 52.381 2.95 0.00 0.00 3.06
4164 4919 2.168728 GGGTAGCCTCTTCTTCGTCATT 59.831 50.000 2.95 0.00 0.00 2.57
4165 4920 3.369576 GGGTAGCCTCTTCTTCGTCATTT 60.370 47.826 2.95 0.00 0.00 2.32
4166 4921 4.142004 GGGTAGCCTCTTCTTCGTCATTTA 60.142 45.833 2.95 0.00 0.00 1.40
4167 4922 4.804665 GGTAGCCTCTTCTTCGTCATTTAC 59.195 45.833 0.00 0.00 0.00 2.01
4168 4923 4.810191 AGCCTCTTCTTCGTCATTTACT 57.190 40.909 0.00 0.00 0.00 2.24
4169 4924 5.153950 AGCCTCTTCTTCGTCATTTACTT 57.846 39.130 0.00 0.00 0.00 2.24
4170 4925 4.932200 AGCCTCTTCTTCGTCATTTACTTG 59.068 41.667 0.00 0.00 0.00 3.16
4171 4926 4.929808 GCCTCTTCTTCGTCATTTACTTGA 59.070 41.667 0.00 0.00 0.00 3.02
4172 4927 5.163943 GCCTCTTCTTCGTCATTTACTTGAC 60.164 44.000 0.00 0.00 42.10 3.18
4173 4928 5.348997 CCTCTTCTTCGTCATTTACTTGACC 59.651 44.000 0.00 0.00 42.46 4.02
4174 4929 5.849510 TCTTCTTCGTCATTTACTTGACCA 58.150 37.500 0.00 0.00 42.46 4.02
4175 4930 6.285224 TCTTCTTCGTCATTTACTTGACCAA 58.715 36.000 0.00 0.00 42.46 3.67
4176 4931 6.764085 TCTTCTTCGTCATTTACTTGACCAAA 59.236 34.615 0.00 0.00 42.46 3.28
4177 4932 7.444183 TCTTCTTCGTCATTTACTTGACCAAAT 59.556 33.333 0.00 0.00 42.46 2.32
4178 4933 8.610248 TTCTTCGTCATTTACTTGACCAAATA 57.390 30.769 0.00 0.00 42.46 1.40
4179 4934 8.610248 TCTTCGTCATTTACTTGACCAAATAA 57.390 30.769 0.00 0.00 42.46 1.40
4180 4935 9.058174 TCTTCGTCATTTACTTGACCAAATAAA 57.942 29.630 0.00 0.00 42.46 1.40
4181 4936 9.329913 CTTCGTCATTTACTTGACCAAATAAAG 57.670 33.333 3.41 0.00 42.46 1.85
4182 4937 7.302524 TCGTCATTTACTTGACCAAATAAAGC 58.697 34.615 3.41 0.00 42.46 3.51
4183 4938 7.041030 TCGTCATTTACTTGACCAAATAAAGCA 60.041 33.333 3.41 0.00 42.46 3.91
4184 4939 7.754924 CGTCATTTACTTGACCAAATAAAGCAT 59.245 33.333 3.41 0.00 42.46 3.79
4192 4947 9.777297 ACTTGACCAAATAAAGCATAACATTTT 57.223 25.926 0.00 0.00 0.00 1.82
4230 4985 9.840427 TTGTAAGCAGATTTTAACAATTCTAGC 57.160 29.630 0.00 0.00 0.00 3.42
4231 4986 9.008965 TGTAAGCAGATTTTAACAATTCTAGCA 57.991 29.630 0.00 0.00 0.00 3.49
4232 4987 9.840427 GTAAGCAGATTTTAACAATTCTAGCAA 57.160 29.630 0.00 0.00 0.00 3.91
4233 4988 8.976986 AAGCAGATTTTAACAATTCTAGCAAG 57.023 30.769 0.00 0.00 0.00 4.01
4234 4989 8.115490 AGCAGATTTTAACAATTCTAGCAAGT 57.885 30.769 0.00 0.00 0.00 3.16
4235 4990 8.239998 AGCAGATTTTAACAATTCTAGCAAGTC 58.760 33.333 0.00 0.00 0.00 3.01
4236 4991 8.023128 GCAGATTTTAACAATTCTAGCAAGTCA 58.977 33.333 0.00 0.00 0.00 3.41
4237 4992 9.897744 CAGATTTTAACAATTCTAGCAAGTCAA 57.102 29.630 0.00 0.00 0.00 3.18
4239 4994 9.899226 GATTTTAACAATTCTAGCAAGTCAAGT 57.101 29.630 0.00 0.00 0.00 3.16
4243 4998 6.893958 ACAATTCTAGCAAGTCAAGTATCG 57.106 37.500 0.00 0.00 0.00 2.92
4244 4999 5.812642 ACAATTCTAGCAAGTCAAGTATCGG 59.187 40.000 0.00 0.00 0.00 4.18
4245 5000 5.854010 ATTCTAGCAAGTCAAGTATCGGA 57.146 39.130 0.00 0.00 0.00 4.55
4246 5001 4.902443 TCTAGCAAGTCAAGTATCGGAG 57.098 45.455 0.00 0.00 0.00 4.63
4247 5002 2.969628 AGCAAGTCAAGTATCGGAGG 57.030 50.000 0.00 0.00 0.00 4.30
4248 5003 1.134670 AGCAAGTCAAGTATCGGAGGC 60.135 52.381 0.00 0.00 0.00 4.70
4249 5004 1.560923 CAAGTCAAGTATCGGAGGCG 58.439 55.000 0.00 0.00 0.00 5.52
4250 5005 0.460311 AAGTCAAGTATCGGAGGCGG 59.540 55.000 0.00 0.00 0.00 6.13
4251 5006 0.395311 AGTCAAGTATCGGAGGCGGA 60.395 55.000 0.00 0.00 0.00 5.54
4252 5007 0.674534 GTCAAGTATCGGAGGCGGAT 59.325 55.000 0.00 0.00 0.00 4.18
4253 5008 1.068741 GTCAAGTATCGGAGGCGGATT 59.931 52.381 0.00 0.00 0.00 3.01
4254 5009 2.295349 GTCAAGTATCGGAGGCGGATTA 59.705 50.000 0.00 0.00 0.00 1.75
4255 5010 2.557056 TCAAGTATCGGAGGCGGATTAG 59.443 50.000 0.00 0.00 0.00 1.73
4256 5011 1.546961 AGTATCGGAGGCGGATTAGG 58.453 55.000 0.00 0.00 0.00 2.69
4257 5012 1.075050 AGTATCGGAGGCGGATTAGGA 59.925 52.381 0.00 0.00 0.00 2.94
4258 5013 1.473278 GTATCGGAGGCGGATTAGGAG 59.527 57.143 0.00 0.00 0.00 3.69
4259 5014 1.536943 ATCGGAGGCGGATTAGGAGC 61.537 60.000 0.00 0.00 0.00 4.70
4260 5015 2.498941 CGGAGGCGGATTAGGAGCA 61.499 63.158 0.00 0.00 0.00 4.26
4261 5016 1.069935 GGAGGCGGATTAGGAGCAC 59.930 63.158 0.00 0.00 0.00 4.40
4262 5017 1.686325 GGAGGCGGATTAGGAGCACA 61.686 60.000 0.00 0.00 0.00 4.57
4263 5018 0.530870 GAGGCGGATTAGGAGCACAC 60.531 60.000 0.00 0.00 0.00 3.82
4264 5019 1.883084 GGCGGATTAGGAGCACACG 60.883 63.158 0.00 0.00 0.00 4.49
4265 5020 1.883084 GCGGATTAGGAGCACACGG 60.883 63.158 0.00 0.00 0.00 4.94
4266 5021 1.813859 CGGATTAGGAGCACACGGA 59.186 57.895 0.00 0.00 0.00 4.69
4267 5022 0.249073 CGGATTAGGAGCACACGGAG 60.249 60.000 0.00 0.00 0.00 4.63
4268 5023 0.105039 GGATTAGGAGCACACGGAGG 59.895 60.000 0.00 0.00 0.00 4.30
4269 5024 0.530870 GATTAGGAGCACACGGAGGC 60.531 60.000 0.00 0.00 0.00 4.70
4270 5025 0.978146 ATTAGGAGCACACGGAGGCT 60.978 55.000 0.00 0.00 44.48 4.58
4274 5029 4.008933 AGCACACGGAGGCTCCAC 62.009 66.667 31.69 15.44 35.91 4.02
4275 5030 4.008933 GCACACGGAGGCTCCACT 62.009 66.667 31.69 14.36 35.91 4.00
4276 5031 2.262915 CACACGGAGGCTCCACTC 59.737 66.667 31.69 6.39 35.91 3.51
4282 5037 4.787735 GAGGCTCCACTCCCTGTA 57.212 61.111 2.15 0.00 0.00 2.74
4283 5038 2.992476 GAGGCTCCACTCCCTGTAA 58.008 57.895 2.15 0.00 0.00 2.41
4284 5039 1.501582 GAGGCTCCACTCCCTGTAAT 58.498 55.000 2.15 0.00 0.00 1.89
4285 5040 1.414550 GAGGCTCCACTCCCTGTAATC 59.585 57.143 2.15 0.00 0.00 1.75
4286 5041 1.008938 AGGCTCCACTCCCTGTAATCT 59.991 52.381 0.00 0.00 0.00 2.40
4287 5042 1.139853 GGCTCCACTCCCTGTAATCTG 59.860 57.143 0.00 0.00 0.00 2.90
4288 5043 1.834263 GCTCCACTCCCTGTAATCTGT 59.166 52.381 0.00 0.00 0.00 3.41
4289 5044 3.031736 GCTCCACTCCCTGTAATCTGTA 58.968 50.000 0.00 0.00 0.00 2.74
4290 5045 3.181474 GCTCCACTCCCTGTAATCTGTAC 60.181 52.174 0.00 0.00 0.00 2.90
4291 5046 3.021695 TCCACTCCCTGTAATCTGTACG 58.978 50.000 0.00 0.00 0.00 3.67
4292 5047 2.758979 CCACTCCCTGTAATCTGTACGT 59.241 50.000 0.00 0.00 0.00 3.57
4293 5048 3.181489 CCACTCCCTGTAATCTGTACGTC 60.181 52.174 0.00 0.00 0.00 4.34
4294 5049 3.022406 ACTCCCTGTAATCTGTACGTCC 58.978 50.000 0.00 0.00 0.00 4.79
4295 5050 3.021695 CTCCCTGTAATCTGTACGTCCA 58.978 50.000 0.00 0.00 0.00 4.02
4296 5051 3.637229 CTCCCTGTAATCTGTACGTCCAT 59.363 47.826 0.00 0.00 0.00 3.41
4297 5052 4.028131 TCCCTGTAATCTGTACGTCCATT 58.972 43.478 0.00 0.00 0.00 3.16
4298 5053 5.202765 TCCCTGTAATCTGTACGTCCATTA 58.797 41.667 0.00 0.00 0.00 1.90
4299 5054 5.068198 TCCCTGTAATCTGTACGTCCATTAC 59.932 44.000 0.00 1.72 33.89 1.89
4300 5055 5.068723 CCCTGTAATCTGTACGTCCATTACT 59.931 44.000 14.75 0.00 34.25 2.24
4301 5056 5.977725 CCTGTAATCTGTACGTCCATTACTG 59.022 44.000 14.75 13.96 34.25 2.74
4302 5057 6.405508 CCTGTAATCTGTACGTCCATTACTGT 60.406 42.308 14.75 0.00 34.25 3.55
4303 5058 6.558009 TGTAATCTGTACGTCCATTACTGTC 58.442 40.000 14.75 0.00 34.25 3.51
4304 5059 5.916661 AATCTGTACGTCCATTACTGTCT 57.083 39.130 0.00 0.00 0.00 3.41
4305 5060 4.959596 TCTGTACGTCCATTACTGTCTC 57.040 45.455 0.00 0.00 0.00 3.36
4306 5061 3.373130 TCTGTACGTCCATTACTGTCTCG 59.627 47.826 0.00 0.00 0.00 4.04
4307 5062 2.421073 TGTACGTCCATTACTGTCTCGG 59.579 50.000 0.00 0.00 0.00 4.63
4308 5063 0.815734 ACGTCCATTACTGTCTCGGG 59.184 55.000 0.00 0.00 0.00 5.14
4309 5064 1.100510 CGTCCATTACTGTCTCGGGA 58.899 55.000 0.00 0.00 0.00 5.14
4310 5065 1.681793 CGTCCATTACTGTCTCGGGAT 59.318 52.381 0.00 0.00 0.00 3.85
4311 5066 2.543861 CGTCCATTACTGTCTCGGGATG 60.544 54.545 0.00 0.00 0.00 3.51
4312 5067 2.039418 TCCATTACTGTCTCGGGATGG 58.961 52.381 0.00 0.00 36.29 3.51
4313 5068 2.039418 CCATTACTGTCTCGGGATGGA 58.961 52.381 0.00 0.00 36.92 3.41
4314 5069 2.634940 CCATTACTGTCTCGGGATGGAT 59.365 50.000 0.00 0.00 36.92 3.41
4315 5070 3.555795 CCATTACTGTCTCGGGATGGATG 60.556 52.174 0.00 0.00 36.92 3.51
4316 5071 1.040646 TACTGTCTCGGGATGGATGC 58.959 55.000 0.00 0.00 0.00 3.91
4317 5072 0.977627 ACTGTCTCGGGATGGATGCA 60.978 55.000 0.00 0.00 0.00 3.96
4318 5073 0.249784 CTGTCTCGGGATGGATGCAG 60.250 60.000 0.00 0.00 0.00 4.41
4319 5074 0.977627 TGTCTCGGGATGGATGCAGT 60.978 55.000 0.00 0.00 0.00 4.40
4320 5075 0.531532 GTCTCGGGATGGATGCAGTG 60.532 60.000 0.00 0.00 0.00 3.66
4321 5076 0.977627 TCTCGGGATGGATGCAGTGT 60.978 55.000 0.00 0.00 0.00 3.55
4322 5077 0.752658 CTCGGGATGGATGCAGTGTA 59.247 55.000 0.00 0.00 0.00 2.90
4323 5078 1.138859 CTCGGGATGGATGCAGTGTAA 59.861 52.381 0.00 0.00 0.00 2.41
4324 5079 1.138859 TCGGGATGGATGCAGTGTAAG 59.861 52.381 0.00 0.00 0.00 2.34
4325 5080 1.134401 CGGGATGGATGCAGTGTAAGT 60.134 52.381 0.00 0.00 0.00 2.24
4326 5081 2.680805 CGGGATGGATGCAGTGTAAGTT 60.681 50.000 0.00 0.00 0.00 2.66
4327 5082 3.356290 GGGATGGATGCAGTGTAAGTTT 58.644 45.455 0.00 0.00 0.00 2.66
4328 5083 3.129287 GGGATGGATGCAGTGTAAGTTTG 59.871 47.826 0.00 0.00 0.00 2.93
4329 5084 3.428045 GGATGGATGCAGTGTAAGTTTGC 60.428 47.826 0.00 0.00 38.30 3.68
4330 5085 2.862541 TGGATGCAGTGTAAGTTTGCT 58.137 42.857 0.00 0.00 38.60 3.91
4331 5086 3.221771 TGGATGCAGTGTAAGTTTGCTT 58.778 40.909 0.00 0.00 38.60 3.91
4332 5087 3.253188 TGGATGCAGTGTAAGTTTGCTTC 59.747 43.478 0.00 5.13 39.74 3.86
4333 5088 3.826466 GATGCAGTGTAAGTTTGCTTCC 58.174 45.455 0.00 0.00 38.60 3.46
4334 5089 2.649190 TGCAGTGTAAGTTTGCTTCCA 58.351 42.857 0.00 0.00 38.60 3.53
4335 5090 3.221771 TGCAGTGTAAGTTTGCTTCCAT 58.778 40.909 0.00 0.00 38.60 3.41
4336 5091 3.253188 TGCAGTGTAAGTTTGCTTCCATC 59.747 43.478 0.00 0.00 38.60 3.51
4337 5092 3.366374 GCAGTGTAAGTTTGCTTCCATCC 60.366 47.826 0.00 0.00 36.22 3.51
4338 5093 3.820467 CAGTGTAAGTTTGCTTCCATCCA 59.180 43.478 0.00 0.00 36.22 3.41
4339 5094 4.278170 CAGTGTAAGTTTGCTTCCATCCAA 59.722 41.667 0.00 0.00 36.22 3.53
4340 5095 5.047802 CAGTGTAAGTTTGCTTCCATCCAAT 60.048 40.000 0.00 0.00 36.22 3.16
4341 5096 6.150976 CAGTGTAAGTTTGCTTCCATCCAATA 59.849 38.462 0.00 0.00 36.22 1.90
4342 5097 6.151144 AGTGTAAGTTTGCTTCCATCCAATAC 59.849 38.462 0.00 0.00 36.22 1.89
4343 5098 4.701956 AAGTTTGCTTCCATCCAATACG 57.298 40.909 0.00 0.00 0.00 3.06
4344 5099 3.950397 AGTTTGCTTCCATCCAATACGA 58.050 40.909 0.00 0.00 0.00 3.43
4345 5100 3.941483 AGTTTGCTTCCATCCAATACGAG 59.059 43.478 0.00 0.00 0.00 4.18
4346 5101 3.904800 TTGCTTCCATCCAATACGAGA 57.095 42.857 0.00 0.00 0.00 4.04
4347 5102 3.179443 TGCTTCCATCCAATACGAGAC 57.821 47.619 0.00 0.00 0.00 3.36
4348 5103 2.128035 GCTTCCATCCAATACGAGACG 58.872 52.381 0.00 0.00 0.00 4.18
4349 5104 2.481449 GCTTCCATCCAATACGAGACGT 60.481 50.000 0.00 0.00 44.35 4.34
4350 5105 3.243301 GCTTCCATCCAATACGAGACGTA 60.243 47.826 6.48 6.48 46.28 3.57
4362 5117 4.737353 ACGAGACGTATATTGCGTATGA 57.263 40.909 4.75 0.00 43.04 2.15
4363 5118 5.099484 ACGAGACGTATATTGCGTATGAA 57.901 39.130 4.75 0.00 43.04 2.57
4364 5119 4.908156 ACGAGACGTATATTGCGTATGAAC 59.092 41.667 4.75 0.00 43.04 3.18
4365 5120 4.907582 CGAGACGTATATTGCGTATGAACA 59.092 41.667 4.75 0.00 43.04 3.18
4366 5121 5.397240 CGAGACGTATATTGCGTATGAACAA 59.603 40.000 4.75 0.00 43.04 2.83
4367 5122 6.075257 CGAGACGTATATTGCGTATGAACAAA 60.075 38.462 4.75 0.00 43.04 2.83
4368 5123 7.161829 AGACGTATATTGCGTATGAACAAAG 57.838 36.000 5.24 0.00 43.04 2.77
4369 5124 6.976349 AGACGTATATTGCGTATGAACAAAGA 59.024 34.615 5.24 0.00 43.04 2.52
4370 5125 7.490079 AGACGTATATTGCGTATGAACAAAGAA 59.510 33.333 5.24 0.00 43.04 2.52
4371 5126 8.138365 ACGTATATTGCGTATGAACAAAGAAT 57.862 30.769 3.65 0.00 41.06 2.40
4372 5127 8.273557 ACGTATATTGCGTATGAACAAAGAATC 58.726 33.333 3.65 0.00 41.06 2.52
4373 5128 8.272866 CGTATATTGCGTATGAACAAAGAATCA 58.727 33.333 0.00 0.00 0.00 2.57
4374 5129 9.370126 GTATATTGCGTATGAACAAAGAATCAC 57.630 33.333 0.00 0.00 0.00 3.06
4375 5130 5.681337 TTGCGTATGAACAAAGAATCACA 57.319 34.783 0.00 0.00 0.00 3.58
4376 5131 5.878332 TGCGTATGAACAAAGAATCACAT 57.122 34.783 0.00 0.00 0.00 3.21
4377 5132 6.252967 TGCGTATGAACAAAGAATCACATT 57.747 33.333 0.00 0.00 0.00 2.71
4378 5133 7.371126 TGCGTATGAACAAAGAATCACATTA 57.629 32.000 0.00 0.00 0.00 1.90
4379 5134 7.811653 TGCGTATGAACAAAGAATCACATTAA 58.188 30.769 0.00 0.00 0.00 1.40
4380 5135 8.458052 TGCGTATGAACAAAGAATCACATTAAT 58.542 29.630 0.00 0.00 0.00 1.40
4381 5136 9.289303 GCGTATGAACAAAGAATCACATTAATT 57.711 29.630 0.00 0.00 0.00 1.40
4385 5140 8.741101 TGAACAAAGAATCACATTAATTTCGG 57.259 30.769 0.00 0.00 0.00 4.30
4386 5141 7.328249 TGAACAAAGAATCACATTAATTTCGGC 59.672 33.333 0.00 0.00 0.00 5.54
4387 5142 6.099341 ACAAAGAATCACATTAATTTCGGCC 58.901 36.000 0.00 0.00 0.00 6.13
4388 5143 4.918810 AGAATCACATTAATTTCGGCCC 57.081 40.909 0.00 0.00 0.00 5.80
4389 5144 3.636764 AGAATCACATTAATTTCGGCCCC 59.363 43.478 0.00 0.00 0.00 5.80
4390 5145 1.770294 TCACATTAATTTCGGCCCCC 58.230 50.000 0.00 0.00 0.00 5.40
4406 5161 2.065899 CCCCCAACTGTCTTTTGTCA 57.934 50.000 0.00 0.00 0.00 3.58
4407 5162 1.956477 CCCCCAACTGTCTTTTGTCAG 59.044 52.381 0.00 0.00 40.54 3.51
4408 5163 2.422803 CCCCCAACTGTCTTTTGTCAGA 60.423 50.000 0.00 0.00 38.60 3.27
4409 5164 3.490348 CCCCAACTGTCTTTTGTCAGAT 58.510 45.455 0.00 0.00 38.60 2.90
4410 5165 3.254166 CCCCAACTGTCTTTTGTCAGATG 59.746 47.826 0.00 0.00 38.60 2.90
4411 5166 3.304928 CCCAACTGTCTTTTGTCAGATGC 60.305 47.826 0.00 0.00 37.18 3.91
4412 5167 3.548587 CAACTGTCTTTTGTCAGATGCG 58.451 45.455 0.00 0.00 38.60 4.73
4413 5168 3.111853 ACTGTCTTTTGTCAGATGCGA 57.888 42.857 0.00 0.00 38.60 5.10
4414 5169 3.062763 ACTGTCTTTTGTCAGATGCGAG 58.937 45.455 0.00 0.00 38.60 5.03
4415 5170 1.800586 TGTCTTTTGTCAGATGCGAGC 59.199 47.619 0.00 0.00 0.00 5.03
4416 5171 1.800586 GTCTTTTGTCAGATGCGAGCA 59.199 47.619 0.00 0.00 0.00 4.26
4417 5172 2.224079 GTCTTTTGTCAGATGCGAGCAA 59.776 45.455 0.57 0.00 0.00 3.91
4418 5173 3.076621 TCTTTTGTCAGATGCGAGCAAT 58.923 40.909 0.57 0.00 0.00 3.56
4419 5174 4.093408 GTCTTTTGTCAGATGCGAGCAATA 59.907 41.667 0.57 0.00 0.00 1.90
4420 5175 4.093408 TCTTTTGTCAGATGCGAGCAATAC 59.907 41.667 0.57 0.00 0.00 1.89
4421 5176 1.559831 TGTCAGATGCGAGCAATACG 58.440 50.000 0.57 0.00 0.00 3.06
4422 5177 1.135112 TGTCAGATGCGAGCAATACGT 60.135 47.619 0.57 0.00 0.00 3.57
4423 5178 1.927174 GTCAGATGCGAGCAATACGTT 59.073 47.619 0.57 0.00 0.00 3.99
4424 5179 2.348666 GTCAGATGCGAGCAATACGTTT 59.651 45.455 0.57 0.00 0.00 3.60
4425 5180 2.348362 TCAGATGCGAGCAATACGTTTG 59.652 45.455 0.57 0.00 0.00 2.93
4426 5181 2.094258 CAGATGCGAGCAATACGTTTGT 59.906 45.455 0.57 0.00 0.00 2.83
4427 5182 2.094258 AGATGCGAGCAATACGTTTGTG 59.906 45.455 0.57 0.00 0.00 3.33
4428 5183 0.515127 TGCGAGCAATACGTTTGTGG 59.485 50.000 0.00 0.00 0.00 4.17
4429 5184 0.793104 GCGAGCAATACGTTTGTGGC 60.793 55.000 0.00 0.81 0.00 5.01
4430 5185 0.179200 CGAGCAATACGTTTGTGGCC 60.179 55.000 0.00 0.00 0.00 5.36
4431 5186 0.878416 GAGCAATACGTTTGTGGCCA 59.122 50.000 0.00 0.00 0.00 5.36
4432 5187 1.472480 GAGCAATACGTTTGTGGCCAT 59.528 47.619 9.72 0.00 0.00 4.40
4433 5188 1.892474 AGCAATACGTTTGTGGCCATT 59.108 42.857 9.72 0.00 0.00 3.16
4434 5189 3.085533 AGCAATACGTTTGTGGCCATTA 58.914 40.909 9.72 0.00 0.00 1.90
4435 5190 3.508012 AGCAATACGTTTGTGGCCATTAA 59.492 39.130 9.72 4.76 0.00 1.40
4436 5191 3.857093 GCAATACGTTTGTGGCCATTAAG 59.143 43.478 9.72 2.33 0.00 1.85
4437 5192 3.775661 ATACGTTTGTGGCCATTAAGC 57.224 42.857 9.72 9.10 0.00 3.09
4438 5193 1.323412 ACGTTTGTGGCCATTAAGCA 58.677 45.000 9.72 0.00 0.00 3.91
4439 5194 1.000717 ACGTTTGTGGCCATTAAGCAC 60.001 47.619 9.72 3.19 0.00 4.40
4440 5195 1.696988 GTTTGTGGCCATTAAGCACG 58.303 50.000 9.72 0.00 0.00 5.34
4441 5196 1.268352 GTTTGTGGCCATTAAGCACGA 59.732 47.619 9.72 0.00 0.00 4.35
4442 5197 0.878416 TTGTGGCCATTAAGCACGAC 59.122 50.000 9.72 0.00 0.00 4.34
4443 5198 0.958382 TGTGGCCATTAAGCACGACC 60.958 55.000 9.72 0.00 0.00 4.79
4444 5199 1.743623 TGGCCATTAAGCACGACCG 60.744 57.895 0.00 0.00 0.00 4.79
4445 5200 1.743995 GGCCATTAAGCACGACCGT 60.744 57.895 0.00 0.00 0.00 4.83
4446 5201 1.702491 GGCCATTAAGCACGACCGTC 61.702 60.000 0.00 0.00 0.00 4.79
4447 5202 1.702491 GCCATTAAGCACGACCGTCC 61.702 60.000 0.00 0.00 0.00 4.79
4448 5203 1.087771 CCATTAAGCACGACCGTCCC 61.088 60.000 0.00 0.00 0.00 4.46
4449 5204 1.153706 ATTAAGCACGACCGTCCCG 60.154 57.895 0.00 0.00 0.00 5.14
4450 5205 3.919973 TTAAGCACGACCGTCCCGC 62.920 63.158 0.00 0.00 0.00 6.13
4467 5222 4.335647 CCAGGCACAAGCTCGGGT 62.336 66.667 0.00 0.00 41.70 5.28
4468 5223 2.743928 CAGGCACAAGCTCGGGTC 60.744 66.667 0.00 0.00 41.70 4.46
4469 5224 3.241530 AGGCACAAGCTCGGGTCA 61.242 61.111 0.00 0.00 41.70 4.02
4470 5225 2.281484 GGCACAAGCTCGGGTCAA 60.281 61.111 0.00 0.00 41.70 3.18
4471 5226 2.328099 GGCACAAGCTCGGGTCAAG 61.328 63.158 0.00 0.00 41.70 3.02
4472 5227 2.328099 GCACAAGCTCGGGTCAAGG 61.328 63.158 0.00 0.00 37.91 3.61
4473 5228 1.672356 CACAAGCTCGGGTCAAGGG 60.672 63.158 0.00 0.00 0.00 3.95
4474 5229 2.045926 CAAGCTCGGGTCAAGGGG 60.046 66.667 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
215 216 4.741239 TGGAGGGTCTGGGAGGGC 62.741 72.222 0.00 0.00 0.00 5.19
470 471 2.343758 GCCTCTCGTGCAACCAGA 59.656 61.111 0.00 0.00 0.00 3.86
602 603 2.760385 GCCGAGGCCACCTACTCT 60.760 66.667 5.01 0.00 31.76 3.24
820 821 2.039624 GCCTGGTCCTCCTCCTCA 59.960 66.667 0.00 0.00 34.23 3.86
852 853 3.687102 CGCTACCACCACCACCGA 61.687 66.667 0.00 0.00 0.00 4.69
881 882 1.252175 TCAGTGAGTGAGCAGGAGAC 58.748 55.000 0.00 0.00 0.00 3.36
886 887 1.000618 TGAGCTTCAGTGAGTGAGCAG 59.999 52.381 15.80 1.00 36.21 4.24
929 930 1.692042 CCATCTCCACTGGCTCCCT 60.692 63.158 0.00 0.00 0.00 4.20
943 945 1.749258 GGTTCGGCCCAACTCCATC 60.749 63.158 13.23 0.00 0.00 3.51
974 976 3.775654 GTCTGGGCCTGGGTCTCG 61.776 72.222 10.79 0.00 0.00 4.04
975 977 2.607750 TGTCTGGGCCTGGGTCTC 60.608 66.667 10.79 0.00 0.00 3.36
976 978 2.608988 CTGTCTGGGCCTGGGTCT 60.609 66.667 10.79 0.00 0.00 3.85
977 979 2.607750 TCTGTCTGGGCCTGGGTC 60.608 66.667 10.79 2.89 0.00 4.46
978 980 2.608988 CTCTGTCTGGGCCTGGGT 60.609 66.667 10.79 0.00 0.00 4.51
979 981 4.106925 GCTCTGTCTGGGCCTGGG 62.107 72.222 10.79 2.09 0.00 4.45
992 994 0.555769 TTTCTGTTGGGTTGGGCTCT 59.444 50.000 0.00 0.00 0.00 4.09
1008 1010 1.019805 CGCGTTCCCCTCCTTCTTTC 61.020 60.000 0.00 0.00 0.00 2.62
1468 1478 2.069277 CGAAGTTTCTTGCGCGTGC 61.069 57.895 15.48 15.48 43.20 5.34
1547 1559 5.197224 TGACCCATGGAAATTCTGAGATT 57.803 39.130 15.22 0.00 0.00 2.40
1630 1650 9.086336 CAAAATTGCGTTAATGGAGATGTAATT 57.914 29.630 0.00 0.00 31.36 1.40
1784 1805 2.948979 ACTTCGTCATTTTGAGCACCAA 59.051 40.909 0.00 0.00 0.00 3.67
1786 1807 3.003275 TGAACTTCGTCATTTTGAGCACC 59.997 43.478 0.00 0.00 0.00 5.01
1795 1819 5.178797 CCTACCAAGATGAACTTCGTCATT 58.821 41.667 12.58 2.92 38.38 2.57
1800 1824 3.887621 TCCCTACCAAGATGAACTTCG 57.112 47.619 0.00 0.00 36.61 3.79
1805 1829 5.312178 TCTCCTTTTTCCCTACCAAGATGAA 59.688 40.000 0.00 0.00 0.00 2.57
1832 1856 0.916086 ATCCTCGTGGGCATGGTTAA 59.084 50.000 3.23 0.00 34.39 2.01
1853 1877 2.095059 GGCTTTTGTTGATGTCGAGCAT 60.095 45.455 0.00 0.00 41.24 3.79
1854 1878 1.266718 GGCTTTTGTTGATGTCGAGCA 59.733 47.619 0.00 0.00 0.00 4.26
1870 1894 2.609737 CCGTCGTTCTTTCTACTGGCTT 60.610 50.000 0.00 0.00 0.00 4.35
1905 1929 1.880894 GCCTGTAACCGGCTTTTCC 59.119 57.895 0.00 0.00 44.17 3.13
1917 1941 0.804364 CTTTGATTGCTGCGCCTGTA 59.196 50.000 4.18 0.00 0.00 2.74
1921 1945 2.507769 GCCTTTGATTGCTGCGCC 60.508 61.111 4.18 0.00 0.00 6.53
2004 2028 1.276989 CCAGGCTTAGAACCCGTTACA 59.723 52.381 0.00 0.00 0.00 2.41
2010 2034 3.433740 CCATAAGACCAGGCTTAGAACCC 60.434 52.174 0.00 0.00 34.16 4.11
2023 2047 4.963628 ACTAGGTTTCCTCTCCATAAGACC 59.036 45.833 0.00 0.00 34.61 3.85
2103 2127 3.535561 ACACAAAAGCCTCATAGGATCG 58.464 45.455 0.00 0.00 37.67 3.69
2110 2134 8.096414 AGCAATTTAAATACACAAAAGCCTCAT 58.904 29.630 0.01 0.00 0.00 2.90
2111 2135 7.441017 AGCAATTTAAATACACAAAAGCCTCA 58.559 30.769 0.01 0.00 0.00 3.86
2122 2146 8.148351 AGGCTATACGAGAGCAATTTAAATACA 58.852 33.333 0.01 0.00 41.98 2.29
2141 2393 6.037786 AGCTGCACGATTTTATAGGCTATA 57.962 37.500 10.18 10.18 0.00 1.31
2142 2394 4.899502 AGCTGCACGATTTTATAGGCTAT 58.100 39.130 12.41 12.41 0.00 2.97
2143 2395 4.336889 AGCTGCACGATTTTATAGGCTA 57.663 40.909 1.02 0.00 0.00 3.93
2144 2396 3.199880 AGCTGCACGATTTTATAGGCT 57.800 42.857 1.02 0.00 0.00 4.58
2145 2397 3.561725 AGAAGCTGCACGATTTTATAGGC 59.438 43.478 1.02 0.00 0.00 3.93
2146 2398 5.107298 GCTAGAAGCTGCACGATTTTATAGG 60.107 44.000 1.02 0.00 38.45 2.57
2148 2400 5.356426 TGCTAGAAGCTGCACGATTTTATA 58.644 37.500 1.02 0.00 42.97 0.98
2150 2402 3.595173 TGCTAGAAGCTGCACGATTTTA 58.405 40.909 1.02 0.00 42.97 1.52
2151 2403 2.426522 TGCTAGAAGCTGCACGATTTT 58.573 42.857 1.02 0.00 42.97 1.82
2152 2404 2.099141 TGCTAGAAGCTGCACGATTT 57.901 45.000 1.02 0.00 42.97 2.17
2153 2405 2.099141 TTGCTAGAAGCTGCACGATT 57.901 45.000 1.02 0.00 42.97 3.34
2154 2406 2.322355 ATTGCTAGAAGCTGCACGAT 57.678 45.000 1.02 0.00 42.97 3.73
2155 2407 2.099141 AATTGCTAGAAGCTGCACGA 57.901 45.000 1.02 0.00 42.97 4.35
2157 2409 3.905784 ACAAAATTGCTAGAAGCTGCAC 58.094 40.909 1.02 0.00 42.97 4.57
2158 2410 4.202141 ACAACAAAATTGCTAGAAGCTGCA 60.202 37.500 1.02 0.00 42.97 4.41
2159 2411 4.149396 CACAACAAAATTGCTAGAAGCTGC 59.851 41.667 0.00 0.00 42.97 5.25
2173 2425 5.421693 AGCTGATATATTGCCCACAACAAAA 59.578 36.000 7.69 0.00 38.99 2.44
2178 2430 5.448654 AGAAAGCTGATATATTGCCCACAA 58.551 37.500 7.69 0.00 40.87 3.33
2229 2489 9.982291 GACAAGATTTATGCTAAAACGTTGATA 57.018 29.630 0.00 0.00 0.00 2.15
2231 2491 7.866729 TGACAAGATTTATGCTAAAACGTTGA 58.133 30.769 0.00 0.00 0.00 3.18
2262 2524 5.297776 CCTGTAAATCCAGCTTATCCAAGTG 59.702 44.000 0.00 0.00 34.00 3.16
2263 2525 5.191722 TCCTGTAAATCCAGCTTATCCAAGT 59.808 40.000 0.00 0.00 34.00 3.16
2265 2527 5.708736 TCCTGTAAATCCAGCTTATCCAA 57.291 39.130 0.00 0.00 0.00 3.53
2274 2536 8.567285 ACAACTTATTCTTCCTGTAAATCCAG 57.433 34.615 0.00 0.00 0.00 3.86
2288 2551 9.959721 AACCAGAACATACATACAACTTATTCT 57.040 29.630 0.00 0.00 0.00 2.40
2293 2556 5.767665 TGCAACCAGAACATACATACAACTT 59.232 36.000 0.00 0.00 0.00 2.66
2298 2561 6.038603 ACATCATGCAACCAGAACATACATAC 59.961 38.462 0.00 0.00 0.00 2.39
2304 2567 4.561938 CCAAACATCATGCAACCAGAACAT 60.562 41.667 0.00 0.00 0.00 2.71
2307 2570 2.964464 ACCAAACATCATGCAACCAGAA 59.036 40.909 0.00 0.00 0.00 3.02
2311 2574 6.204495 ACAATTTTACCAAACATCATGCAACC 59.796 34.615 0.00 0.00 0.00 3.77
2312 2575 7.188468 ACAATTTTACCAAACATCATGCAAC 57.812 32.000 0.00 0.00 0.00 4.17
2344 2607 7.334421 AGCATGACAACTAACATAGTGTTTAGG 59.666 37.037 0.00 0.00 41.45 2.69
2347 2610 6.149474 GGAGCATGACAACTAACATAGTGTTT 59.851 38.462 0.00 0.00 41.45 2.83
2354 2617 7.148018 CCAAAATAGGAGCATGACAACTAACAT 60.148 37.037 0.00 0.00 0.00 2.71
2360 2623 4.458989 TCACCAAAATAGGAGCATGACAAC 59.541 41.667 0.00 0.00 0.00 3.32
2380 2644 5.650543 AGAAAACAAACATGACAAGGTCAC 58.349 37.500 0.00 0.00 45.65 3.67
2383 2647 5.913137 TGAGAAAACAAACATGACAAGGT 57.087 34.783 0.00 0.00 0.00 3.50
2384 2648 6.813152 ACTTTGAGAAAACAAACATGACAAGG 59.187 34.615 0.00 0.00 36.11 3.61
2387 2651 9.134734 GTTTACTTTGAGAAAACAAACATGACA 57.865 29.630 0.00 0.00 36.11 3.58
2388 2652 8.592155 GGTTTACTTTGAGAAAACAAACATGAC 58.408 33.333 0.00 0.00 36.11 3.06
2389 2653 7.762159 GGGTTTACTTTGAGAAAACAAACATGA 59.238 33.333 0.00 0.00 36.11 3.07
2392 2656 6.211785 AGGGGTTTACTTTGAGAAAACAAACA 59.788 34.615 0.00 0.00 36.11 2.83
2393 2657 6.533723 CAGGGGTTTACTTTGAGAAAACAAAC 59.466 38.462 0.00 0.00 36.11 2.93
2394 2658 6.437793 TCAGGGGTTTACTTTGAGAAAACAAA 59.562 34.615 0.00 0.00 37.98 2.83
2395 2659 5.952947 TCAGGGGTTTACTTTGAGAAAACAA 59.047 36.000 0.00 0.00 35.33 2.83
2448 2755 7.546316 CAGATCTGAGATCAGGCATTTATGTAG 59.454 40.741 23.17 0.00 43.91 2.74
2449 2756 7.234166 TCAGATCTGAGATCAGGCATTTATGTA 59.766 37.037 21.67 0.00 43.91 2.29
2472 2779 4.336889 TTGTGGGAAGTCTGTAACTCAG 57.663 45.455 0.00 0.00 44.85 3.35
2492 2799 2.384382 CGAGCGTTTTTGTTGCAGATT 58.616 42.857 0.00 0.00 0.00 2.40
2511 2818 2.247637 CAGACATGTGCATTTTCAGCG 58.752 47.619 1.15 0.00 33.85 5.18
2527 2856 4.083271 GCCAAAGATAGTCAACAACCAGAC 60.083 45.833 0.00 0.00 35.02 3.51
2529 2858 3.820467 TGCCAAAGATAGTCAACAACCAG 59.180 43.478 0.00 0.00 0.00 4.00
2530 2859 3.820467 CTGCCAAAGATAGTCAACAACCA 59.180 43.478 0.00 0.00 0.00 3.67
2531 2860 3.821033 ACTGCCAAAGATAGTCAACAACC 59.179 43.478 0.00 0.00 0.00 3.77
2532 2861 5.438761 AACTGCCAAAGATAGTCAACAAC 57.561 39.130 0.00 0.00 0.00 3.32
2533 2862 7.284489 AGTTAAACTGCCAAAGATAGTCAACAA 59.716 33.333 0.00 0.00 0.00 2.83
2534 2863 6.770785 AGTTAAACTGCCAAAGATAGTCAACA 59.229 34.615 0.00 0.00 0.00 3.33
2535 2864 7.173390 AGAGTTAAACTGCCAAAGATAGTCAAC 59.827 37.037 0.00 0.00 0.00 3.18
2536 2865 7.173218 CAGAGTTAAACTGCCAAAGATAGTCAA 59.827 37.037 0.00 0.00 0.00 3.18
2537 2866 6.650807 CAGAGTTAAACTGCCAAAGATAGTCA 59.349 38.462 0.00 0.00 0.00 3.41
2538 2867 7.066374 CAGAGTTAAACTGCCAAAGATAGTC 57.934 40.000 0.00 0.00 0.00 2.59
2584 2913 5.823209 TGAAGACGACCGATACTGAATAA 57.177 39.130 0.00 0.00 0.00 1.40
2585 2914 5.220989 CCTTGAAGACGACCGATACTGAATA 60.221 44.000 0.00 0.00 0.00 1.75
2586 2915 4.440250 CCTTGAAGACGACCGATACTGAAT 60.440 45.833 0.00 0.00 0.00 2.57
2589 2918 2.163815 ACCTTGAAGACGACCGATACTG 59.836 50.000 0.00 0.00 0.00 2.74
2595 2924 1.578583 AACAACCTTGAAGACGACCG 58.421 50.000 0.00 0.00 0.00 4.79
2943 3612 7.116805 CAGCAACAGCAGACGAATATATATGAA 59.883 37.037 0.00 0.00 0.00 2.57
2952 3621 0.604780 AGCAGCAACAGCAGACGAAT 60.605 50.000 0.00 0.00 0.00 3.34
2964 3633 0.394938 TTCCGTACCTTCAGCAGCAA 59.605 50.000 0.00 0.00 0.00 3.91
2965 3634 0.037326 CTTCCGTACCTTCAGCAGCA 60.037 55.000 0.00 0.00 0.00 4.41
2966 3635 0.246635 TCTTCCGTACCTTCAGCAGC 59.753 55.000 0.00 0.00 0.00 5.25
3009 3678 2.438951 GAAACACGTCGGGGTAGGCA 62.439 60.000 0.00 0.00 0.00 4.75
3018 3687 2.089121 CGATCTGTCTTGAAACACGTCG 59.911 50.000 0.00 0.00 0.00 5.12
3046 3715 3.936453 GTGCAGAAACCGGAATACATACA 59.064 43.478 9.46 0.00 0.00 2.29
3051 3720 2.097466 CCATGTGCAGAAACCGGAATAC 59.903 50.000 9.46 0.00 0.00 1.89
3052 3721 2.364632 CCATGTGCAGAAACCGGAATA 58.635 47.619 9.46 0.00 0.00 1.75
3053 3722 1.176527 CCATGTGCAGAAACCGGAAT 58.823 50.000 9.46 0.00 0.00 3.01
3056 3725 2.568090 GCCATGTGCAGAAACCGG 59.432 61.111 0.00 0.00 40.77 5.28
3057 3726 1.526575 AAGGCCATGTGCAGAAACCG 61.527 55.000 5.01 0.00 43.89 4.44
3058 3727 0.681175 AAAGGCCATGTGCAGAAACC 59.319 50.000 5.01 0.00 43.89 3.27
3059 3728 1.666888 CGAAAGGCCATGTGCAGAAAC 60.667 52.381 5.01 0.00 43.89 2.78
3061 3730 1.865788 GCGAAAGGCCATGTGCAGAA 61.866 55.000 5.01 0.00 43.89 3.02
3062 3731 2.334946 GCGAAAGGCCATGTGCAGA 61.335 57.895 5.01 0.00 43.89 4.26
3063 3732 1.870055 AAGCGAAAGGCCATGTGCAG 61.870 55.000 5.01 0.00 45.17 4.41
3064 3733 1.462731 AAAGCGAAAGGCCATGTGCA 61.463 50.000 5.01 0.00 45.17 4.57
3065 3734 1.010419 CAAAGCGAAAGGCCATGTGC 61.010 55.000 5.01 3.30 45.17 4.57
3066 3735 0.388907 CCAAAGCGAAAGGCCATGTG 60.389 55.000 5.01 0.00 45.17 3.21
3067 3736 0.827507 ACCAAAGCGAAAGGCCATGT 60.828 50.000 5.01 0.00 45.17 3.21
3068 3737 0.388907 CACCAAAGCGAAAGGCCATG 60.389 55.000 5.01 0.00 45.17 3.66
3069 3738 0.539438 TCACCAAAGCGAAAGGCCAT 60.539 50.000 5.01 0.00 45.17 4.40
3070 3739 1.152860 TCACCAAAGCGAAAGGCCA 60.153 52.632 5.01 0.00 45.17 5.36
3071 3740 1.285950 GTCACCAAAGCGAAAGGCC 59.714 57.895 0.00 0.00 45.17 5.19
3072 3741 0.317854 GTGTCACCAAAGCGAAAGGC 60.318 55.000 0.00 0.00 44.05 4.35
3073 3742 0.041312 CGTGTCACCAAAGCGAAAGG 60.041 55.000 0.00 0.00 0.00 3.11
3074 3743 0.041312 CCGTGTCACCAAAGCGAAAG 60.041 55.000 0.00 0.00 0.00 2.62
3075 3744 0.745128 ACCGTGTCACCAAAGCGAAA 60.745 50.000 0.00 0.00 0.00 3.46
3076 3745 1.153329 ACCGTGTCACCAAAGCGAA 60.153 52.632 0.00 0.00 0.00 4.70
3077 3746 1.593209 GACCGTGTCACCAAAGCGA 60.593 57.895 0.00 0.00 32.09 4.93
3078 3747 1.594293 AGACCGTGTCACCAAAGCG 60.594 57.895 0.00 0.00 34.60 4.68
3079 3748 0.814010 ACAGACCGTGTCACCAAAGC 60.814 55.000 0.00 0.00 31.90 3.51
3080 3749 3.379650 ACAGACCGTGTCACCAAAG 57.620 52.632 0.00 0.00 31.90 2.77
3130 3821 2.792290 CTGCGCACAGGAATCGTCG 61.792 63.158 5.66 0.00 40.48 5.12
3205 3896 1.280982 CTGAATGACCGTCCATGTCG 58.719 55.000 0.00 0.00 35.46 4.35
3214 3905 2.271800 GTCTACAAGGCTGAATGACCG 58.728 52.381 0.00 0.00 0.00 4.79
3217 3908 4.141846 GGAGATGTCTACAAGGCTGAATGA 60.142 45.833 0.00 0.00 0.00 2.57
3223 3914 1.115467 CCGGAGATGTCTACAAGGCT 58.885 55.000 0.00 0.00 0.00 4.58
3227 3918 1.262417 TGTGCCGGAGATGTCTACAA 58.738 50.000 5.05 0.00 0.00 2.41
3228 3919 1.485124 ATGTGCCGGAGATGTCTACA 58.515 50.000 5.05 0.00 0.00 2.74
3289 3986 5.125097 GGGCAAGATATATCATGCTCTTTGG 59.875 44.000 31.10 4.16 45.65 3.28
3302 3999 4.601406 ACCACCAAAAGGGCAAGATATA 57.399 40.909 0.00 0.00 42.05 0.86
3368 4065 2.300152 CTGTACAAGAGGAAGGTGCTGA 59.700 50.000 0.00 0.00 0.00 4.26
3391 4088 4.222588 GCTAGCAGAGATATCCCACATCTT 59.777 45.833 10.63 0.00 32.86 2.40
3438 4135 9.470399 TCACATACCTCATCAGTTAGTTACTTA 57.530 33.333 0.00 0.00 33.85 2.24
3439 4136 8.362464 TCACATACCTCATCAGTTAGTTACTT 57.638 34.615 0.00 0.00 33.85 2.24
3440 4137 7.956328 TCACATACCTCATCAGTTAGTTACT 57.044 36.000 0.00 0.00 37.68 2.24
3487 4184 1.436600 CACAGGCTCAAGCTACACAG 58.563 55.000 1.46 0.00 41.70 3.66
3488 4185 0.603707 GCACAGGCTCAAGCTACACA 60.604 55.000 1.46 0.00 41.70 3.72
3491 4188 1.003355 TGGCACAGGCTCAAGCTAC 60.003 57.895 1.46 0.00 41.70 3.58
3518 4215 3.603532 TGGATGATGCAGACAGAAGAAC 58.396 45.455 0.00 0.00 0.00 3.01
3543 4246 0.033366 ACTCACAGTATGCACGCACA 59.967 50.000 0.00 0.00 42.53 4.57
3544 4247 1.920574 CTACTCACAGTATGCACGCAC 59.079 52.381 0.00 0.00 42.53 5.34
3545 4248 1.735700 GCTACTCACAGTATGCACGCA 60.736 52.381 0.00 0.00 42.53 5.24
3546 4249 0.924090 GCTACTCACAGTATGCACGC 59.076 55.000 0.00 0.00 42.53 5.34
3573 4276 4.846137 GCATCAGTGACATTAACGACAAAC 59.154 41.667 0.00 0.00 0.00 2.93
3606 4337 2.567615 ACGTCTGCTAGTCCTCCAAAAT 59.432 45.455 0.00 0.00 0.00 1.82
3667 4399 5.085920 CAGAGAGGTGGATTGGATCTATCT 58.914 45.833 0.00 0.00 33.53 1.98
3714 4446 4.435425 TGCATCCACGTACAGTATTAACC 58.565 43.478 0.00 0.00 0.00 2.85
3748 4480 1.316651 GCCATCCCTTTCTCATGCTC 58.683 55.000 0.00 0.00 0.00 4.26
3785 4518 3.230976 AGGTATAGATCACATGCGTCCA 58.769 45.455 0.00 0.00 0.00 4.02
3807 4546 2.351418 TGAGCAAACAAACAGAGACGTG 59.649 45.455 0.00 0.00 0.00 4.49
3950 4690 1.628340 TCACTGATTTCGGACCCACAT 59.372 47.619 0.00 0.00 0.00 3.21
3967 4717 3.436496 GCGGACACTAGTACAGAATCAC 58.564 50.000 0.00 0.00 0.00 3.06
4036 4786 8.635765 TTGAAAGCACCTCCCATATATTAATC 57.364 34.615 0.00 0.00 0.00 1.75
4141 4896 1.135333 GACGAAGAAGAGGCTACCCAG 59.865 57.143 0.00 0.00 0.00 4.45
4142 4897 1.183549 GACGAAGAAGAGGCTACCCA 58.816 55.000 0.00 0.00 0.00 4.51
4143 4898 1.183549 TGACGAAGAAGAGGCTACCC 58.816 55.000 0.00 0.00 0.00 3.69
4144 4899 3.528597 AATGACGAAGAAGAGGCTACC 57.471 47.619 0.00 0.00 0.00 3.18
4145 4900 5.652518 AGTAAATGACGAAGAAGAGGCTAC 58.347 41.667 0.00 0.00 0.00 3.58
4146 4901 5.916661 AGTAAATGACGAAGAAGAGGCTA 57.083 39.130 0.00 0.00 0.00 3.93
4147 4902 4.810191 AGTAAATGACGAAGAAGAGGCT 57.190 40.909 0.00 0.00 0.00 4.58
4148 4903 4.929808 TCAAGTAAATGACGAAGAAGAGGC 59.070 41.667 0.00 0.00 0.00 4.70
4149 4904 6.396459 GTCAAGTAAATGACGAAGAAGAGG 57.604 41.667 0.00 0.00 40.23 3.69
4166 4921 9.777297 AAAATGTTATGCTTTATTTGGTCAAGT 57.223 25.926 0.00 0.00 0.00 3.16
4204 4959 9.840427 GCTAGAATTGTTAAAATCTGCTTACAA 57.160 29.630 0.00 0.00 28.40 2.41
4205 4960 9.008965 TGCTAGAATTGTTAAAATCTGCTTACA 57.991 29.630 0.00 0.00 28.40 2.41
4206 4961 9.840427 TTGCTAGAATTGTTAAAATCTGCTTAC 57.160 29.630 0.00 0.00 28.40 2.34
4208 4963 8.579863 ACTTGCTAGAATTGTTAAAATCTGCTT 58.420 29.630 1.04 0.00 28.40 3.91
4209 4964 8.115490 ACTTGCTAGAATTGTTAAAATCTGCT 57.885 30.769 1.04 0.00 28.40 4.24
4210 4965 8.023128 TGACTTGCTAGAATTGTTAAAATCTGC 58.977 33.333 1.04 0.00 28.40 4.26
4211 4966 9.897744 TTGACTTGCTAGAATTGTTAAAATCTG 57.102 29.630 1.04 0.00 28.40 2.90
4213 4968 9.899226 ACTTGACTTGCTAGAATTGTTAAAATC 57.101 29.630 1.04 0.00 0.00 2.17
4217 4972 8.869897 CGATACTTGACTTGCTAGAATTGTTAA 58.130 33.333 1.04 0.00 0.00 2.01
4218 4973 7.491372 CCGATACTTGACTTGCTAGAATTGTTA 59.509 37.037 1.04 0.00 0.00 2.41
4219 4974 6.313905 CCGATACTTGACTTGCTAGAATTGTT 59.686 38.462 1.04 0.00 0.00 2.83
4220 4975 5.812642 CCGATACTTGACTTGCTAGAATTGT 59.187 40.000 1.04 0.00 0.00 2.71
4221 4976 6.042777 TCCGATACTTGACTTGCTAGAATTG 58.957 40.000 1.04 0.00 0.00 2.32
4222 4977 6.222038 TCCGATACTTGACTTGCTAGAATT 57.778 37.500 1.04 0.00 0.00 2.17
4223 4978 5.221342 CCTCCGATACTTGACTTGCTAGAAT 60.221 44.000 1.04 0.00 0.00 2.40
4224 4979 4.098044 CCTCCGATACTTGACTTGCTAGAA 59.902 45.833 1.04 0.00 0.00 2.10
4225 4980 3.632604 CCTCCGATACTTGACTTGCTAGA 59.367 47.826 1.04 0.00 0.00 2.43
4226 4981 3.797184 GCCTCCGATACTTGACTTGCTAG 60.797 52.174 0.00 0.00 0.00 3.42
4227 4982 2.100916 GCCTCCGATACTTGACTTGCTA 59.899 50.000 0.00 0.00 0.00 3.49
4228 4983 1.134670 GCCTCCGATACTTGACTTGCT 60.135 52.381 0.00 0.00 0.00 3.91
4229 4984 1.291132 GCCTCCGATACTTGACTTGC 58.709 55.000 0.00 0.00 0.00 4.01
4230 4985 1.560923 CGCCTCCGATACTTGACTTG 58.439 55.000 0.00 0.00 36.29 3.16
4231 4986 0.460311 CCGCCTCCGATACTTGACTT 59.540 55.000 0.00 0.00 36.29 3.01
4232 4987 0.395311 TCCGCCTCCGATACTTGACT 60.395 55.000 0.00 0.00 36.29 3.41
4233 4988 0.674534 ATCCGCCTCCGATACTTGAC 59.325 55.000 0.00 0.00 36.29 3.18
4234 4989 1.410004 AATCCGCCTCCGATACTTGA 58.590 50.000 0.00 0.00 36.29 3.02
4235 4990 2.352814 CCTAATCCGCCTCCGATACTTG 60.353 54.545 0.00 0.00 36.29 3.16
4236 4991 1.893801 CCTAATCCGCCTCCGATACTT 59.106 52.381 0.00 0.00 36.29 2.24
4237 4992 1.075050 TCCTAATCCGCCTCCGATACT 59.925 52.381 0.00 0.00 36.29 2.12
4238 4993 1.473278 CTCCTAATCCGCCTCCGATAC 59.527 57.143 0.00 0.00 36.29 2.24
4239 4994 1.835494 CTCCTAATCCGCCTCCGATA 58.165 55.000 0.00 0.00 36.29 2.92
4240 4995 1.536943 GCTCCTAATCCGCCTCCGAT 61.537 60.000 0.00 0.00 36.29 4.18
4241 4996 2.201022 GCTCCTAATCCGCCTCCGA 61.201 63.158 0.00 0.00 36.29 4.55
4242 4997 2.340443 GCTCCTAATCCGCCTCCG 59.660 66.667 0.00 0.00 0.00 4.63
4243 4998 1.069935 GTGCTCCTAATCCGCCTCC 59.930 63.158 0.00 0.00 0.00 4.30
4244 4999 0.530870 GTGTGCTCCTAATCCGCCTC 60.531 60.000 0.00 0.00 0.00 4.70
4245 5000 1.522569 GTGTGCTCCTAATCCGCCT 59.477 57.895 0.00 0.00 0.00 5.52
4246 5001 1.883084 CGTGTGCTCCTAATCCGCC 60.883 63.158 0.00 0.00 0.00 6.13
4247 5002 1.883084 CCGTGTGCTCCTAATCCGC 60.883 63.158 0.00 0.00 0.00 5.54
4248 5003 0.249073 CTCCGTGTGCTCCTAATCCG 60.249 60.000 0.00 0.00 0.00 4.18
4249 5004 0.105039 CCTCCGTGTGCTCCTAATCC 59.895 60.000 0.00 0.00 0.00 3.01
4250 5005 0.530870 GCCTCCGTGTGCTCCTAATC 60.531 60.000 0.00 0.00 0.00 1.75
4251 5006 0.978146 AGCCTCCGTGTGCTCCTAAT 60.978 55.000 0.00 0.00 30.33 1.73
4252 5007 1.605058 GAGCCTCCGTGTGCTCCTAA 61.605 60.000 6.14 0.00 46.50 2.69
4253 5008 2.037367 AGCCTCCGTGTGCTCCTA 59.963 61.111 0.00 0.00 30.33 2.94
4254 5009 3.386237 GAGCCTCCGTGTGCTCCT 61.386 66.667 6.14 0.00 46.50 3.69
4257 5012 4.008933 GTGGAGCCTCCGTGTGCT 62.009 66.667 6.21 0.00 40.17 4.40
4258 5013 3.941657 GAGTGGAGCCTCCGTGTGC 62.942 68.421 6.21 0.00 40.17 4.57
4259 5014 2.262915 GAGTGGAGCCTCCGTGTG 59.737 66.667 6.21 0.00 40.17 3.82
4260 5015 2.997897 GGAGTGGAGCCTCCGTGT 60.998 66.667 6.21 0.00 41.58 4.49
4265 5020 1.414550 GATTACAGGGAGTGGAGCCTC 59.585 57.143 0.00 0.00 0.00 4.70
4266 5021 1.008938 AGATTACAGGGAGTGGAGCCT 59.991 52.381 0.00 0.00 0.00 4.58
4267 5022 1.139853 CAGATTACAGGGAGTGGAGCC 59.860 57.143 0.00 0.00 0.00 4.70
4268 5023 1.834263 ACAGATTACAGGGAGTGGAGC 59.166 52.381 0.00 0.00 0.00 4.70
4269 5024 3.066900 CGTACAGATTACAGGGAGTGGAG 59.933 52.174 0.00 0.00 0.00 3.86
4270 5025 3.021695 CGTACAGATTACAGGGAGTGGA 58.978 50.000 0.00 0.00 0.00 4.02
4271 5026 2.758979 ACGTACAGATTACAGGGAGTGG 59.241 50.000 0.00 0.00 0.00 4.00
4272 5027 3.181489 GGACGTACAGATTACAGGGAGTG 60.181 52.174 0.00 0.00 0.00 3.51
4273 5028 3.022406 GGACGTACAGATTACAGGGAGT 58.978 50.000 0.00 0.00 0.00 3.85
4274 5029 3.021695 TGGACGTACAGATTACAGGGAG 58.978 50.000 0.00 0.00 0.00 4.30
4275 5030 3.090210 TGGACGTACAGATTACAGGGA 57.910 47.619 0.00 0.00 0.00 4.20
4276 5031 4.402056 AATGGACGTACAGATTACAGGG 57.598 45.455 6.62 0.00 0.00 4.45
4277 5032 5.977725 CAGTAATGGACGTACAGATTACAGG 59.022 44.000 20.91 11.91 34.89 4.00
4278 5033 6.561614 ACAGTAATGGACGTACAGATTACAG 58.438 40.000 20.91 16.75 34.89 2.74
4279 5034 6.376299 AGACAGTAATGGACGTACAGATTACA 59.624 38.462 20.91 0.00 34.89 2.41
4280 5035 6.793349 AGACAGTAATGGACGTACAGATTAC 58.207 40.000 14.02 14.02 33.34 1.89
4281 5036 6.238293 CGAGACAGTAATGGACGTACAGATTA 60.238 42.308 6.62 0.00 0.00 1.75
4282 5037 5.448768 CGAGACAGTAATGGACGTACAGATT 60.449 44.000 6.62 0.00 0.00 2.40
4283 5038 4.035324 CGAGACAGTAATGGACGTACAGAT 59.965 45.833 6.62 0.00 0.00 2.90
4284 5039 3.373130 CGAGACAGTAATGGACGTACAGA 59.627 47.826 6.62 0.00 0.00 3.41
4285 5040 3.487042 CCGAGACAGTAATGGACGTACAG 60.487 52.174 6.62 0.00 0.00 2.74
4286 5041 2.421073 CCGAGACAGTAATGGACGTACA 59.579 50.000 1.10 1.10 0.00 2.90
4287 5042 2.223433 CCCGAGACAGTAATGGACGTAC 60.223 54.545 0.00 0.00 0.00 3.67
4288 5043 2.019249 CCCGAGACAGTAATGGACGTA 58.981 52.381 0.00 0.00 0.00 3.57
4289 5044 0.815734 CCCGAGACAGTAATGGACGT 59.184 55.000 0.00 0.00 0.00 4.34
4290 5045 1.100510 TCCCGAGACAGTAATGGACG 58.899 55.000 0.00 0.00 0.00 4.79
4291 5046 2.224066 CCATCCCGAGACAGTAATGGAC 60.224 54.545 0.00 0.00 36.58 4.02
4292 5047 2.039418 CCATCCCGAGACAGTAATGGA 58.961 52.381 0.00 0.00 36.58 3.41
4293 5048 2.039418 TCCATCCCGAGACAGTAATGG 58.961 52.381 0.00 0.00 35.95 3.16
4294 5049 3.657634 CATCCATCCCGAGACAGTAATG 58.342 50.000 0.00 0.00 0.00 1.90
4295 5050 2.037772 GCATCCATCCCGAGACAGTAAT 59.962 50.000 0.00 0.00 0.00 1.89
4296 5051 1.412710 GCATCCATCCCGAGACAGTAA 59.587 52.381 0.00 0.00 0.00 2.24
4297 5052 1.040646 GCATCCATCCCGAGACAGTA 58.959 55.000 0.00 0.00 0.00 2.74
4298 5053 0.977627 TGCATCCATCCCGAGACAGT 60.978 55.000 0.00 0.00 0.00 3.55
4299 5054 0.249784 CTGCATCCATCCCGAGACAG 60.250 60.000 0.00 0.00 0.00 3.51
4300 5055 0.977627 ACTGCATCCATCCCGAGACA 60.978 55.000 0.00 0.00 0.00 3.41
4301 5056 0.531532 CACTGCATCCATCCCGAGAC 60.532 60.000 0.00 0.00 0.00 3.36
4302 5057 0.977627 ACACTGCATCCATCCCGAGA 60.978 55.000 0.00 0.00 0.00 4.04
4303 5058 0.752658 TACACTGCATCCATCCCGAG 59.247 55.000 0.00 0.00 0.00 4.63
4304 5059 1.138859 CTTACACTGCATCCATCCCGA 59.861 52.381 0.00 0.00 0.00 5.14
4305 5060 1.134401 ACTTACACTGCATCCATCCCG 60.134 52.381 0.00 0.00 0.00 5.14
4306 5061 2.717639 ACTTACACTGCATCCATCCC 57.282 50.000 0.00 0.00 0.00 3.85
4307 5062 3.428045 GCAAACTTACACTGCATCCATCC 60.428 47.826 0.00 0.00 36.09 3.51
4308 5063 3.441572 AGCAAACTTACACTGCATCCATC 59.558 43.478 0.00 0.00 38.58 3.51
4309 5064 3.424703 AGCAAACTTACACTGCATCCAT 58.575 40.909 0.00 0.00 38.58 3.41
4310 5065 2.862541 AGCAAACTTACACTGCATCCA 58.137 42.857 0.00 0.00 38.58 3.41
4311 5066 3.366374 GGAAGCAAACTTACACTGCATCC 60.366 47.826 2.22 2.22 44.05 3.51
4312 5067 3.253188 TGGAAGCAAACTTACACTGCATC 59.747 43.478 0.00 0.00 42.05 3.91
4313 5068 3.221771 TGGAAGCAAACTTACACTGCAT 58.778 40.909 0.00 0.00 42.05 3.96
4314 5069 2.649190 TGGAAGCAAACTTACACTGCA 58.351 42.857 0.00 0.00 42.05 4.41
4320 5075 5.353123 TCGTATTGGATGGAAGCAAACTTAC 59.647 40.000 0.00 0.00 35.82 2.34
4321 5076 5.492895 TCGTATTGGATGGAAGCAAACTTA 58.507 37.500 0.00 0.00 35.82 2.24
4322 5077 4.331968 TCGTATTGGATGGAAGCAAACTT 58.668 39.130 0.00 0.00 39.43 2.66
4323 5078 3.941483 CTCGTATTGGATGGAAGCAAACT 59.059 43.478 0.00 0.00 0.00 2.66
4324 5079 3.938963 TCTCGTATTGGATGGAAGCAAAC 59.061 43.478 0.00 0.00 0.00 2.93
4325 5080 3.938963 GTCTCGTATTGGATGGAAGCAAA 59.061 43.478 0.00 0.00 0.00 3.68
4326 5081 3.531538 GTCTCGTATTGGATGGAAGCAA 58.468 45.455 0.00 0.00 0.00 3.91
4327 5082 2.481276 CGTCTCGTATTGGATGGAAGCA 60.481 50.000 0.00 0.00 0.00 3.91
4328 5083 2.128035 CGTCTCGTATTGGATGGAAGC 58.872 52.381 0.00 0.00 0.00 3.86
4329 5084 3.438297 ACGTCTCGTATTGGATGGAAG 57.562 47.619 0.00 0.00 38.73 3.46
4340 5095 5.844301 TCATACGCAATATACGTCTCGTA 57.156 39.130 6.95 4.56 46.28 3.43
4341 5096 4.737353 TCATACGCAATATACGTCTCGT 57.263 40.909 6.95 0.00 43.88 4.18
4342 5097 4.907582 TGTTCATACGCAATATACGTCTCG 59.092 41.667 6.95 0.00 43.88 4.04
4343 5098 6.742999 TTGTTCATACGCAATATACGTCTC 57.257 37.500 6.95 0.00 43.88 3.36
4344 5099 6.976349 TCTTTGTTCATACGCAATATACGTCT 59.024 34.615 6.95 0.00 43.88 4.18
4345 5100 7.157050 TCTTTGTTCATACGCAATATACGTC 57.843 36.000 6.95 0.00 43.88 4.34
4347 5102 8.272866 TGATTCTTTGTTCATACGCAATATACG 58.727 33.333 0.00 0.00 0.00 3.06
4348 5103 9.370126 GTGATTCTTTGTTCATACGCAATATAC 57.630 33.333 0.00 0.00 0.00 1.47
4349 5104 9.103861 TGTGATTCTTTGTTCATACGCAATATA 57.896 29.630 0.00 0.00 0.00 0.86
4350 5105 7.984391 TGTGATTCTTTGTTCATACGCAATAT 58.016 30.769 0.00 0.00 0.00 1.28
4351 5106 7.371126 TGTGATTCTTTGTTCATACGCAATA 57.629 32.000 0.00 0.00 0.00 1.90
4352 5107 6.252967 TGTGATTCTTTGTTCATACGCAAT 57.747 33.333 0.00 0.00 0.00 3.56
4353 5108 5.681337 TGTGATTCTTTGTTCATACGCAA 57.319 34.783 0.00 0.00 0.00 4.85
4354 5109 5.878332 ATGTGATTCTTTGTTCATACGCA 57.122 34.783 0.00 0.00 0.00 5.24
4355 5110 8.841444 ATTAATGTGATTCTTTGTTCATACGC 57.159 30.769 0.00 0.00 0.00 4.42
4359 5114 9.357652 CCGAAATTAATGTGATTCTTTGTTCAT 57.642 29.630 0.00 0.00 0.00 2.57
4360 5115 7.328249 GCCGAAATTAATGTGATTCTTTGTTCA 59.672 33.333 0.00 0.00 0.00 3.18
4361 5116 7.201435 GGCCGAAATTAATGTGATTCTTTGTTC 60.201 37.037 0.00 0.00 0.00 3.18
4362 5117 6.589907 GGCCGAAATTAATGTGATTCTTTGTT 59.410 34.615 0.00 0.00 0.00 2.83
4363 5118 6.099341 GGCCGAAATTAATGTGATTCTTTGT 58.901 36.000 0.00 0.00 0.00 2.83
4364 5119 5.519927 GGGCCGAAATTAATGTGATTCTTTG 59.480 40.000 0.00 0.00 0.00 2.77
4365 5120 5.395214 GGGGCCGAAATTAATGTGATTCTTT 60.395 40.000 0.00 0.00 0.00 2.52
4366 5121 4.099419 GGGGCCGAAATTAATGTGATTCTT 59.901 41.667 0.00 0.00 0.00 2.52
4367 5122 3.636764 GGGGCCGAAATTAATGTGATTCT 59.363 43.478 0.00 0.00 0.00 2.40
4368 5123 3.243737 GGGGGCCGAAATTAATGTGATTC 60.244 47.826 0.00 0.00 0.00 2.52
4369 5124 2.698274 GGGGGCCGAAATTAATGTGATT 59.302 45.455 0.00 0.00 0.00 2.57
4370 5125 2.316108 GGGGGCCGAAATTAATGTGAT 58.684 47.619 0.00 0.00 0.00 3.06
4371 5126 1.770294 GGGGGCCGAAATTAATGTGA 58.230 50.000 0.00 0.00 0.00 3.58
4387 5142 1.956477 CTGACAAAAGACAGTTGGGGG 59.044 52.381 0.00 0.00 0.00 5.40
4388 5143 2.930950 TCTGACAAAAGACAGTTGGGG 58.069 47.619 0.00 0.00 35.84 4.96
4389 5144 3.304928 GCATCTGACAAAAGACAGTTGGG 60.305 47.826 0.00 0.00 35.60 4.12
4390 5145 3.607775 CGCATCTGACAAAAGACAGTTGG 60.608 47.826 0.00 0.00 35.60 3.77
4391 5146 3.248363 TCGCATCTGACAAAAGACAGTTG 59.752 43.478 0.00 0.00 37.09 3.16
4392 5147 3.466836 TCGCATCTGACAAAAGACAGTT 58.533 40.909 0.00 0.00 35.84 3.16
4393 5148 3.062763 CTCGCATCTGACAAAAGACAGT 58.937 45.455 0.00 0.00 35.84 3.55
4394 5149 2.159734 GCTCGCATCTGACAAAAGACAG 60.160 50.000 0.00 0.00 35.72 3.51
4395 5150 1.800586 GCTCGCATCTGACAAAAGACA 59.199 47.619 0.00 0.00 0.00 3.41
4396 5151 1.800586 TGCTCGCATCTGACAAAAGAC 59.199 47.619 0.00 0.00 0.00 3.01
4397 5152 2.168326 TGCTCGCATCTGACAAAAGA 57.832 45.000 0.00 0.00 0.00 2.52
4398 5153 2.975410 TTGCTCGCATCTGACAAAAG 57.025 45.000 0.00 0.00 0.00 2.27
4399 5154 3.181521 CGTATTGCTCGCATCTGACAAAA 60.182 43.478 0.00 0.00 0.00 2.44
4400 5155 2.348362 CGTATTGCTCGCATCTGACAAA 59.652 45.455 0.00 0.00 0.00 2.83
4401 5156 1.926510 CGTATTGCTCGCATCTGACAA 59.073 47.619 0.00 0.00 0.00 3.18
4402 5157 1.135112 ACGTATTGCTCGCATCTGACA 60.135 47.619 0.00 0.00 0.00 3.58
4403 5158 1.560923 ACGTATTGCTCGCATCTGAC 58.439 50.000 0.00 0.00 0.00 3.51
4404 5159 2.293677 AACGTATTGCTCGCATCTGA 57.706 45.000 0.00 0.00 0.00 3.27
4405 5160 2.094258 ACAAACGTATTGCTCGCATCTG 59.906 45.455 9.44 0.00 0.00 2.90
4406 5161 2.094258 CACAAACGTATTGCTCGCATCT 59.906 45.455 9.44 0.00 0.00 2.90
4407 5162 2.430956 CACAAACGTATTGCTCGCATC 58.569 47.619 9.44 0.00 0.00 3.91
4408 5163 1.130373 CCACAAACGTATTGCTCGCAT 59.870 47.619 9.44 0.00 0.00 4.73
4409 5164 0.515127 CCACAAACGTATTGCTCGCA 59.485 50.000 9.44 0.00 0.00 5.10
4410 5165 0.793104 GCCACAAACGTATTGCTCGC 60.793 55.000 9.44 6.08 0.00 5.03
4411 5166 0.179200 GGCCACAAACGTATTGCTCG 60.179 55.000 0.00 0.00 0.00 5.03
4412 5167 0.878416 TGGCCACAAACGTATTGCTC 59.122 50.000 0.00 1.73 0.00 4.26
4413 5168 1.544724 ATGGCCACAAACGTATTGCT 58.455 45.000 8.16 0.00 0.00 3.91
4414 5169 2.362169 AATGGCCACAAACGTATTGC 57.638 45.000 8.16 0.00 0.00 3.56
4415 5170 3.857093 GCTTAATGGCCACAAACGTATTG 59.143 43.478 8.16 8.35 0.00 1.90
4416 5171 3.508012 TGCTTAATGGCCACAAACGTATT 59.492 39.130 8.16 0.00 0.00 1.89
4417 5172 3.085533 TGCTTAATGGCCACAAACGTAT 58.914 40.909 8.16 0.00 0.00 3.06
4418 5173 2.226912 GTGCTTAATGGCCACAAACGTA 59.773 45.455 8.16 0.00 0.00 3.57
4419 5174 1.000717 GTGCTTAATGGCCACAAACGT 60.001 47.619 8.16 0.00 0.00 3.99
4420 5175 1.696988 GTGCTTAATGGCCACAAACG 58.303 50.000 8.16 0.00 0.00 3.60
4421 5176 1.268352 TCGTGCTTAATGGCCACAAAC 59.732 47.619 8.16 0.84 0.00 2.93
4422 5177 1.268352 GTCGTGCTTAATGGCCACAAA 59.732 47.619 8.16 4.16 0.00 2.83
4423 5178 0.878416 GTCGTGCTTAATGGCCACAA 59.122 50.000 8.16 4.16 0.00 3.33
4424 5179 0.958382 GGTCGTGCTTAATGGCCACA 60.958 55.000 8.16 0.00 39.61 4.17
4425 5180 1.800681 GGTCGTGCTTAATGGCCAC 59.199 57.895 8.16 0.00 39.61 5.01
4426 5181 1.743623 CGGTCGTGCTTAATGGCCA 60.744 57.895 8.56 8.56 39.84 5.36
4427 5182 1.702491 GACGGTCGTGCTTAATGGCC 61.702 60.000 0.00 0.00 36.06 5.36
4428 5183 1.702491 GGACGGTCGTGCTTAATGGC 61.702 60.000 7.73 0.00 33.56 4.40
4429 5184 1.087771 GGGACGGTCGTGCTTAATGG 61.088 60.000 14.05 0.00 36.67 3.16
4430 5185 2.380081 GGGACGGTCGTGCTTAATG 58.620 57.895 14.05 0.00 36.67 1.90
4431 5186 4.926207 GGGACGGTCGTGCTTAAT 57.074 55.556 14.05 0.00 36.67 1.40
4450 5205 4.335647 ACCCGAGCTTGTGCCTGG 62.336 66.667 0.00 0.00 40.80 4.45
4451 5206 2.743928 GACCCGAGCTTGTGCCTG 60.744 66.667 0.00 0.00 40.80 4.85
4452 5207 2.738213 CTTGACCCGAGCTTGTGCCT 62.738 60.000 0.00 0.00 40.80 4.75
4453 5208 2.281484 TTGACCCGAGCTTGTGCC 60.281 61.111 0.00 0.00 40.80 5.01
4454 5209 2.328099 CCTTGACCCGAGCTTGTGC 61.328 63.158 0.00 0.00 40.05 4.57
4455 5210 1.672356 CCCTTGACCCGAGCTTGTG 60.672 63.158 0.00 0.00 0.00 3.33
4456 5211 2.750350 CCCTTGACCCGAGCTTGT 59.250 61.111 0.00 0.00 0.00 3.16
4457 5212 2.045926 CCCCTTGACCCGAGCTTG 60.046 66.667 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.