Multiple sequence alignment - TraesCS2D01G076800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G076800 chr2D 100.000 4686 0 0 1 4686 32792551 32797236 0.000000e+00 8654.0
1 TraesCS2D01G076800 chr2B 88.709 2781 177 61 780 3505 54533390 54536088 0.000000e+00 3269.0
2 TraesCS2D01G076800 chr2B 92.692 780 39 4 1 780 54532585 54533346 0.000000e+00 1109.0
3 TraesCS2D01G076800 chr2B 90.080 877 49 13 3501 4374 54536149 54536990 0.000000e+00 1103.0
4 TraesCS2D01G076800 chr2A 88.898 2414 153 59 450 2795 36041706 36044072 0.000000e+00 2867.0
5 TraesCS2D01G076800 chr2A 89.942 865 51 10 3610 4438 36044521 36045385 0.000000e+00 1083.0
6 TraesCS2D01G076800 chr2A 94.628 484 23 2 1 481 36041224 36041707 0.000000e+00 747.0
7 TraesCS2D01G076800 chr2A 95.930 172 7 0 3312 3483 67867633 67867804 3.570000e-71 279.0
8 TraesCS2D01G076800 chr2A 88.312 77 8 1 1725 1800 36043179 36043255 1.800000e-14 91.6
9 TraesCS2D01G076800 chrUn 95.930 172 7 0 3312 3483 231548361 231548532 3.570000e-71 279.0
10 TraesCS2D01G076800 chrUn 95.930 172 7 0 3312 3483 323806184 323806355 3.570000e-71 279.0
11 TraesCS2D01G076800 chrUn 95.930 172 7 0 3312 3483 350576727 350576898 3.570000e-71 279.0
12 TraesCS2D01G076800 chrUn 95.930 172 7 0 3312 3483 448134607 448134778 3.570000e-71 279.0
13 TraesCS2D01G076800 chr7D 95.930 172 7 0 3312 3483 382042040 382041869 3.570000e-71 279.0
14 TraesCS2D01G076800 chr7D 94.118 85 5 0 4550 4634 602951564 602951480 3.810000e-26 130.0
15 TraesCS2D01G076800 chr7A 95.930 172 7 0 3312 3483 60208997 60209168 3.570000e-71 279.0
16 TraesCS2D01G076800 chr5B 95.930 172 7 0 3312 3483 130641048 130640877 3.570000e-71 279.0
17 TraesCS2D01G076800 chr4A 95.930 172 7 0 3312 3483 552085535 552085706 3.570000e-71 279.0
18 TraesCS2D01G076800 chr7B 94.318 88 5 0 4547 4634 289427292 289427205 8.180000e-28 135.0
19 TraesCS2D01G076800 chr1B 95.238 84 4 0 4551 4634 394506602 394506685 2.940000e-27 134.0
20 TraesCS2D01G076800 chr5A 93.182 88 5 1 4547 4634 38014618 38014704 1.370000e-25 128.0
21 TraesCS2D01G076800 chr1D 93.182 88 5 1 4547 4634 484555759 484555673 1.370000e-25 128.0
22 TraesCS2D01G076800 chr1D 92.857 84 6 0 4551 4634 127266814 127266897 6.370000e-24 122.0
23 TraesCS2D01G076800 chr4B 90.625 96 7 2 4540 4634 308049736 308049642 4.920000e-25 126.0
24 TraesCS2D01G076800 chr1A 92.941 85 6 0 4550 4634 193040110 193040026 1.770000e-24 124.0
25 TraesCS2D01G076800 chr3B 90.426 94 6 3 4551 4642 254777961 254777869 2.290000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G076800 chr2D 32792551 32797236 4685 False 8654.00 8654 100.000000 1 4686 1 chr2D.!!$F1 4685
1 TraesCS2D01G076800 chr2B 54532585 54536990 4405 False 1827.00 3269 90.493667 1 4374 3 chr2B.!!$F1 4373
2 TraesCS2D01G076800 chr2A 36041224 36045385 4161 False 1197.15 2867 90.445000 1 4438 4 chr2A.!!$F2 4437

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 953 0.177141 GTTACATGGGCCGTGCTCTA 59.823 55.000 25.52 8.04 0.00 2.43 F
866 954 0.464036 TTACATGGGCCGTGCTCTAG 59.536 55.000 25.52 0.90 0.00 2.43 F
2053 2208 0.984230 ACACCGTGATCAGTGGGAAT 59.016 50.000 16.80 1.82 38.34 3.01 F
2095 2250 1.502231 CGTGCTCTTACACTGCTGTT 58.498 50.000 0.00 0.00 38.45 3.16 F
2881 3075 1.614317 GCCTCCTTTTTGCTCTGCCTA 60.614 52.381 0.00 0.00 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2065 2220 0.759346 AAGAGCACGGACCTGACTTT 59.241 50.000 0.00 0.0 0.00 2.66 R
2823 2998 1.079490 AGGATGGACTCTTCCTCACCA 59.921 52.381 0.00 0.0 41.96 4.17 R
3329 3556 0.031178 CACAAGCCAGCAAGTCAACC 59.969 55.000 0.00 0.0 0.00 3.77 R
3332 3559 0.181114 ACTCACAAGCCAGCAAGTCA 59.819 50.000 0.00 0.0 0.00 3.41 R
4649 5025 0.033228 CAAAGGCCAAATGCAACCGA 59.967 50.000 5.01 0.0 43.89 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 1.160329 CGATCTTGGATCCAACGGCC 61.160 60.000 23.63 11.37 0.00 6.13
255 256 1.376037 GTCCTTCTTCCTGTGCCCG 60.376 63.158 0.00 0.00 0.00 6.13
265 266 0.745845 CCTGTGCCCGATTCTCAAGG 60.746 60.000 0.00 0.00 0.00 3.61
269 270 2.290896 TGTGCCCGATTCTCAAGGAAAT 60.291 45.455 0.00 0.00 37.49 2.17
293 294 1.690219 GATGATCCTCAGGTGGCCGT 61.690 60.000 0.00 0.00 0.00 5.68
465 502 7.121168 TGGTGAATGATGATGATGATGATGATG 59.879 37.037 0.00 0.00 0.00 3.07
466 503 7.415653 GGTGAATGATGATGATGATGATGATGG 60.416 40.741 0.00 0.00 0.00 3.51
467 504 6.095440 TGAATGATGATGATGATGATGATGGC 59.905 38.462 0.00 0.00 0.00 4.40
475 512 2.680577 TGATGATGATGGCGATTCTCG 58.319 47.619 0.00 0.00 43.89 4.04
620 658 9.838975 GAATGGAATTTTTGTTTTTGTTCAGTT 57.161 25.926 0.00 0.00 36.07 3.16
621 659 9.838975 AATGGAATTTTTGTTTTTGTTCAGTTC 57.161 25.926 0.00 0.00 26.74 3.01
666 704 4.320608 TTTTTCTCTGTTCATTGGTGGC 57.679 40.909 0.00 0.00 0.00 5.01
684 722 2.685388 TGGCATTTTTGTGTCGTCTGAA 59.315 40.909 0.00 0.00 0.00 3.02
685 723 3.317711 TGGCATTTTTGTGTCGTCTGAAT 59.682 39.130 0.00 0.00 0.00 2.57
686 724 4.517075 TGGCATTTTTGTGTCGTCTGAATA 59.483 37.500 0.00 0.00 0.00 1.75
687 725 5.182950 TGGCATTTTTGTGTCGTCTGAATAT 59.817 36.000 0.00 0.00 0.00 1.28
688 726 6.092748 GGCATTTTTGTGTCGTCTGAATATT 58.907 36.000 0.00 0.00 0.00 1.28
689 727 7.094592 TGGCATTTTTGTGTCGTCTGAATATTA 60.095 33.333 0.00 0.00 0.00 0.98
690 728 7.915397 GGCATTTTTGTGTCGTCTGAATATTAT 59.085 33.333 0.00 0.00 0.00 1.28
691 729 8.736742 GCATTTTTGTGTCGTCTGAATATTATG 58.263 33.333 0.00 0.00 0.00 1.90
692 730 9.986833 CATTTTTGTGTCGTCTGAATATTATGA 57.013 29.630 0.00 0.00 0.00 2.15
860 948 5.060506 TGAATATAAGTTACATGGGCCGTG 58.939 41.667 24.09 24.09 0.00 4.94
865 953 0.177141 GTTACATGGGCCGTGCTCTA 59.823 55.000 25.52 8.04 0.00 2.43
866 954 0.464036 TTACATGGGCCGTGCTCTAG 59.536 55.000 25.52 0.90 0.00 2.43
955 1050 4.121669 GGACTGCTGCGAGCGAGA 62.122 66.667 0.00 0.00 46.26 4.04
956 1051 2.103934 GACTGCTGCGAGCGAGAT 59.896 61.111 0.00 0.00 46.26 2.75
957 1052 1.943693 GACTGCTGCGAGCGAGATC 60.944 63.158 0.00 0.00 46.26 2.75
991 1086 2.746375 CCCCAATCCCACTCCTCCG 61.746 68.421 0.00 0.00 0.00 4.63
1480 1584 3.851976 CTCCCATCCCATTCCATACCATA 59.148 47.826 0.00 0.00 0.00 2.74
1482 1586 3.309121 CCCATCCCATTCCATACCATACC 60.309 52.174 0.00 0.00 0.00 2.73
1483 1587 3.593328 CCATCCCATTCCATACCATACCT 59.407 47.826 0.00 0.00 0.00 3.08
1484 1588 4.788075 CCATCCCATTCCATACCATACCTA 59.212 45.833 0.00 0.00 0.00 3.08
1485 1589 5.104360 CCATCCCATTCCATACCATACCTAG 60.104 48.000 0.00 0.00 0.00 3.02
1486 1590 5.363124 TCCCATTCCATACCATACCTAGA 57.637 43.478 0.00 0.00 0.00 2.43
1487 1591 5.927465 TCCCATTCCATACCATACCTAGAT 58.073 41.667 0.00 0.00 0.00 1.98
1488 1592 7.063801 TCCCATTCCATACCATACCTAGATA 57.936 40.000 0.00 0.00 0.00 1.98
1491 1595 7.403231 CCCATTCCATACCATACCTAGATACTT 59.597 40.741 0.00 0.00 0.00 2.24
1530 1649 1.918609 GGAACAATACACTCGTCTCGC 59.081 52.381 0.00 0.00 0.00 5.03
1560 1679 5.452078 TTTTTGTGGCGATGATTCTTCTT 57.548 34.783 0.00 0.00 0.00 2.52
1706 1832 3.206964 AGCATGATTCTCTGATGTGCAG 58.793 45.455 0.00 0.00 46.31 4.41
1707 1833 2.290916 GCATGATTCTCTGATGTGCAGG 59.709 50.000 0.00 0.00 44.98 4.85
1782 1909 1.896220 ACTTGCGATGGAAAGCTCAA 58.104 45.000 0.00 0.00 31.30 3.02
1824 1951 4.484236 CGTTTGGAGCTGCAAATTAATCA 58.516 39.130 32.02 9.30 0.00 2.57
1945 2099 4.111375 ACATGCTAGTGTAGTTCCTTCG 57.889 45.455 0.00 0.00 0.00 3.79
1948 2102 1.471153 GCTAGTGTAGTTCCTTCGCCC 60.471 57.143 0.00 0.00 0.00 6.13
1956 2111 3.503800 AGTTCCTTCGCCCTTTTTACT 57.496 42.857 0.00 0.00 0.00 2.24
1966 2121 2.427095 GCCCTTTTTACTTGCGATGGAT 59.573 45.455 0.00 0.00 0.00 3.41
1980 2135 2.526432 GATGGATAGCCCGGAGTCTAA 58.474 52.381 0.73 0.00 37.93 2.10
1988 2143 1.470458 GCCCGGAGTCTAAGGTTTACG 60.470 57.143 0.73 0.00 0.00 3.18
2053 2208 0.984230 ACACCGTGATCAGTGGGAAT 59.016 50.000 16.80 1.82 38.34 3.01
2065 2220 7.502226 GTGATCAGTGGGAATCCATACATAAAA 59.498 37.037 0.09 0.00 46.09 1.52
2095 2250 1.502231 CGTGCTCTTACACTGCTGTT 58.498 50.000 0.00 0.00 38.45 3.16
2118 2273 7.814587 TGTTACTGACTGTGAGTTCTGATTATG 59.185 37.037 4.99 0.00 0.00 1.90
2135 2290 6.301486 TGATTATGGAGTGGGAATCTTCATG 58.699 40.000 0.00 0.00 33.69 3.07
2176 2332 5.893255 CCATTCAGGGTGGAGAAAAATATCA 59.107 40.000 0.00 0.00 39.12 2.15
2239 2395 4.241590 TGAATTTGATGACAGCCACAAC 57.758 40.909 0.00 0.00 0.00 3.32
2301 2457 7.614908 CAGTATGTCATTTTGTATGCATTTGC 58.385 34.615 3.54 0.00 42.50 3.68
2330 2488 1.926511 CTGTTTGCAGATCCACCGGC 61.927 60.000 0.00 0.00 45.28 6.13
2513 2687 7.918076 TGTCAGGTAAAGAAGAATACATCCTT 58.082 34.615 0.00 0.00 0.00 3.36
2520 2694 9.841880 GTAAAGAAGAATACATCCTTTGGTTTC 57.158 33.333 0.00 0.00 0.00 2.78
2524 2698 5.892348 AGAATACATCCTTTGGTTTCCACT 58.108 37.500 0.00 0.00 30.78 4.00
2529 2703 6.156748 ACATCCTTTGGTTTCCACTTTTAC 57.843 37.500 0.00 0.00 30.78 2.01
2619 2793 4.058817 ACAACATGTTCTCCGAGTTCTTC 58.941 43.478 8.48 0.00 0.00 2.87
2642 2816 6.362248 TCTTTTACTTAAGTTCCCTTGCAGT 58.638 36.000 14.49 0.00 32.90 4.40
2644 2818 6.385649 TTTACTTAAGTTCCCTTGCAGTTG 57.614 37.500 14.49 0.00 31.50 3.16
2648 2822 2.191128 AGTTCCCTTGCAGTTGCTAG 57.809 50.000 8.32 8.32 42.20 3.42
2692 2867 8.342634 TGAAGTTCAAAAACTACATTAGTCAGC 58.657 33.333 2.20 0.00 45.07 4.26
2704 2879 9.672673 ACTACATTAGTCAGCAAATTATTCAGT 57.327 29.630 0.00 0.00 32.47 3.41
2784 2959 6.336842 TCGATAGAGAGATGATGCATTTCA 57.663 37.500 0.00 0.00 42.67 2.69
2785 2960 6.752168 TCGATAGAGAGATGATGCATTTCAA 58.248 36.000 0.00 0.00 42.67 2.69
2786 2961 6.867293 TCGATAGAGAGATGATGCATTTCAAG 59.133 38.462 0.00 0.00 42.67 3.02
2787 2962 6.867293 CGATAGAGAGATGATGCATTTCAAGA 59.133 38.462 0.00 0.00 39.76 3.02
2788 2963 7.546316 CGATAGAGAGATGATGCATTTCAAGAT 59.454 37.037 0.00 0.00 39.76 2.40
2789 2964 9.872721 GATAGAGAGATGATGCATTTCAAGATA 57.127 33.333 0.00 0.00 28.94 1.98
2791 2966 8.554835 AGAGAGATGATGCATTTCAAGATATG 57.445 34.615 0.00 0.00 28.94 1.78
2827 3002 5.936956 AGATAAGAAGAAAGCTTGTCTGGTG 59.063 40.000 0.00 0.00 40.72 4.17
2881 3075 1.614317 GCCTCCTTTTTGCTCTGCCTA 60.614 52.381 0.00 0.00 0.00 3.93
2934 3128 7.182206 ACAGTATGGTCTCCTAGGTGTTTTTAT 59.818 37.037 9.08 2.20 43.62 1.40
2971 3180 8.184192 AGATGAATTTATGCCGAAGTGTAAAAG 58.816 33.333 0.00 0.00 0.00 2.27
2972 3181 7.209471 TGAATTTATGCCGAAGTGTAAAAGT 57.791 32.000 0.00 0.00 0.00 2.66
2978 3187 3.949113 TGCCGAAGTGTAAAAGTTTCCTT 59.051 39.130 0.00 0.00 0.00 3.36
3009 3219 1.687660 GGATCTAGTTCGGACTTCCCC 59.312 57.143 0.00 0.00 37.33 4.81
3075 3288 7.643764 GTCTTGTTTGATGAAGAAACGATGAAA 59.356 33.333 0.00 0.00 36.30 2.69
3078 3291 9.958234 TTGTTTGATGAAGAAACGATGAAATTA 57.042 25.926 0.00 0.00 36.30 1.40
3126 3339 3.700038 AGTAGTTCCGAACCAGATACCAG 59.300 47.826 7.68 0.00 0.00 4.00
3259 3485 1.901591 CAGAAAGGACCATGTGCTGT 58.098 50.000 0.00 0.00 33.74 4.40
3311 3538 8.545229 AGATTTTTGATCAAGTAGAGTCAGTG 57.455 34.615 8.41 0.00 0.00 3.66
3312 3539 7.605691 AGATTTTTGATCAAGTAGAGTCAGTGG 59.394 37.037 8.41 0.00 0.00 4.00
3314 3541 3.435275 TGATCAAGTAGAGTCAGTGGCT 58.565 45.455 0.00 0.00 0.00 4.75
3315 3542 3.194329 TGATCAAGTAGAGTCAGTGGCTG 59.806 47.826 0.00 0.00 0.00 4.85
3316 3543 2.876581 TCAAGTAGAGTCAGTGGCTGA 58.123 47.619 0.00 0.00 38.25 4.26
3317 3544 3.230976 TCAAGTAGAGTCAGTGGCTGAA 58.769 45.455 0.00 0.00 42.46 3.02
3318 3545 3.256879 TCAAGTAGAGTCAGTGGCTGAAG 59.743 47.826 0.00 0.00 42.46 3.02
3319 3546 3.162147 AGTAGAGTCAGTGGCTGAAGA 57.838 47.619 0.00 0.00 42.46 2.87
3320 3547 3.707316 AGTAGAGTCAGTGGCTGAAGAT 58.293 45.455 0.00 0.00 42.46 2.40
3321 3548 3.699038 AGTAGAGTCAGTGGCTGAAGATC 59.301 47.826 0.00 0.84 42.46 2.75
3322 3549 2.818921 AGAGTCAGTGGCTGAAGATCT 58.181 47.619 0.00 0.00 42.46 2.75
3323 3550 2.496871 AGAGTCAGTGGCTGAAGATCTG 59.503 50.000 0.00 0.00 42.46 2.90
3324 3551 2.495270 GAGTCAGTGGCTGAAGATCTGA 59.505 50.000 0.00 0.00 42.46 3.27
3325 3552 2.615869 GTCAGTGGCTGAAGATCTGAC 58.384 52.381 0.00 7.64 42.46 3.51
3326 3553 2.250924 TCAGTGGCTGAAGATCTGACA 58.749 47.619 0.00 0.00 37.57 3.58
3327 3554 2.233186 TCAGTGGCTGAAGATCTGACAG 59.767 50.000 19.54 19.54 37.57 3.51
3328 3555 2.233186 CAGTGGCTGAAGATCTGACAGA 59.767 50.000 24.89 7.80 33.87 3.41
3329 3556 2.496871 AGTGGCTGAAGATCTGACAGAG 59.503 50.000 24.89 7.91 33.87 3.35
3330 3557 1.829849 TGGCTGAAGATCTGACAGAGG 59.170 52.381 24.89 8.25 29.56 3.69
3331 3558 1.830477 GGCTGAAGATCTGACAGAGGT 59.170 52.381 24.89 0.00 34.07 3.85
3332 3559 2.235898 GGCTGAAGATCTGACAGAGGTT 59.764 50.000 24.89 6.55 34.07 3.50
3333 3560 3.260740 GCTGAAGATCTGACAGAGGTTG 58.739 50.000 24.89 7.18 34.07 3.77
3334 3561 3.056250 GCTGAAGATCTGACAGAGGTTGA 60.056 47.826 24.89 0.41 34.07 3.18
3335 3562 4.493547 CTGAAGATCTGACAGAGGTTGAC 58.506 47.826 19.28 1.53 34.07 3.18
3336 3563 4.155709 TGAAGATCTGACAGAGGTTGACT 58.844 43.478 11.52 1.18 0.00 3.41
3337 3564 4.590647 TGAAGATCTGACAGAGGTTGACTT 59.409 41.667 11.52 8.81 0.00 3.01
3338 3565 4.533919 AGATCTGACAGAGGTTGACTTG 57.466 45.455 11.52 0.00 0.00 3.16
3339 3566 2.533266 TCTGACAGAGGTTGACTTGC 57.467 50.000 0.00 0.00 0.00 4.01
3340 3567 2.042464 TCTGACAGAGGTTGACTTGCT 58.958 47.619 0.00 0.00 0.00 3.91
3341 3568 2.141517 CTGACAGAGGTTGACTTGCTG 58.858 52.381 0.00 0.00 0.00 4.41
3342 3569 1.202687 TGACAGAGGTTGACTTGCTGG 60.203 52.381 0.00 0.00 0.00 4.85
3343 3570 0.536006 ACAGAGGTTGACTTGCTGGC 60.536 55.000 0.00 0.00 0.00 4.85
3344 3571 0.250640 CAGAGGTTGACTTGCTGGCT 60.251 55.000 0.00 0.00 0.00 4.75
3345 3572 0.475906 AGAGGTTGACTTGCTGGCTT 59.524 50.000 0.00 0.00 0.00 4.35
3346 3573 0.595095 GAGGTTGACTTGCTGGCTTG 59.405 55.000 0.00 0.00 0.00 4.01
3359 3586 2.195567 GGCTTGTGAGTTGCCAGCA 61.196 57.895 0.00 0.00 45.46 4.41
3361 3588 1.450531 GCTTGTGAGTTGCCAGCACT 61.451 55.000 0.00 0.00 33.83 4.40
3380 3607 4.215399 GCACTGTAGTTGATTGCTAACCAA 59.785 41.667 0.00 0.00 37.94 3.67
3384 3611 5.626142 TGTAGTTGATTGCTAACCAAAGGA 58.374 37.500 0.00 0.00 36.92 3.36
3386 3613 5.649782 AGTTGATTGCTAACCAAAGGATG 57.350 39.130 0.00 0.00 36.92 3.51
3454 3681 4.087182 TCTTCCTGTTCCTGTTACGAGAT 58.913 43.478 0.00 0.00 0.00 2.75
3483 3710 3.953775 AAGCTGACCCCACACCGG 61.954 66.667 0.00 0.00 0.00 5.28
3501 3728 2.682856 CCGGACCAAGTGTTTGATATGG 59.317 50.000 0.00 0.00 36.36 2.74
3554 3847 2.108700 CTTTTTCCGAGTTGTGCGTTG 58.891 47.619 0.00 0.00 0.00 4.10
3574 3867 3.088532 TGATGTTTGGCACTTATGTCCC 58.911 45.455 0.00 0.00 0.00 4.46
3640 3981 3.764885 AATCGCTCCAGTTGTAAATGC 57.235 42.857 0.00 0.00 0.00 3.56
3644 3985 3.006940 CGCTCCAGTTGTAAATGCCTTA 58.993 45.455 0.00 0.00 0.00 2.69
3704 4045 2.342279 CGAGGCGTTGGTCCAAGA 59.658 61.111 3.96 0.00 0.00 3.02
3709 4050 0.036388 GGCGTTGGTCCAAGATCTGA 60.036 55.000 3.96 0.00 0.00 3.27
3752 4101 1.416401 TGTCCTGGTGAACTGAAGACC 59.584 52.381 0.00 0.00 0.00 3.85
3771 4120 6.557291 AGACCGTATATACACTGTAAGCTC 57.443 41.667 13.22 0.00 37.60 4.09
3876 4225 2.683965 CTTCGAGAAAGCGCGTCG 59.316 61.111 8.43 9.06 38.51 5.12
3877 4226 2.050714 TTCGAGAAAGCGCGTCGT 60.051 55.556 19.05 0.00 38.51 4.34
3905 4254 0.790207 CGTTGCGTTGCTGACTGTAT 59.210 50.000 0.00 0.00 0.00 2.29
3922 4271 4.350816 ACTGTATATTCCCCATTAGCAGCA 59.649 41.667 0.00 0.00 0.00 4.41
3938 4287 1.035139 AGCAAAGTTTCAGTGGCAGG 58.965 50.000 0.00 0.00 0.00 4.85
4061 4424 1.271871 TGGTAGTTGCACATGGGAAGG 60.272 52.381 0.00 0.00 0.00 3.46
4171 4534 4.733405 GTCGATTGTTTCAGTTGTTTGGAC 59.267 41.667 0.00 0.00 0.00 4.02
4225 4588 7.884257 TGATGCACATTTCTTCTGTCATTTTA 58.116 30.769 0.00 0.00 0.00 1.52
4236 4599 8.675705 TCTTCTGTCATTTTATTTGTGTGAGA 57.324 30.769 0.00 0.00 0.00 3.27
4239 4602 7.223584 TCTGTCATTTTATTTGTGTGAGAGGA 58.776 34.615 0.00 0.00 32.80 3.71
4243 4607 7.965107 GTCATTTTATTTGTGTGAGAGGACATC 59.035 37.037 0.00 0.00 0.00 3.06
4321 4686 4.877251 ACTGCGGACTTGTTAAACAAAGTA 59.123 37.500 0.00 0.00 37.69 2.24
4365 4730 3.376546 GGTCAATCAAGAATGGACAGCTC 59.623 47.826 0.00 0.00 39.76 4.09
4368 4733 4.698780 TCAATCAAGAATGGACAGCTCAAG 59.301 41.667 0.00 0.00 0.00 3.02
4376 4741 7.951347 AGAATGGACAGCTCAAGAAAAATAT 57.049 32.000 0.00 0.00 0.00 1.28
4377 4742 7.769220 AGAATGGACAGCTCAAGAAAAATATG 58.231 34.615 0.00 0.00 0.00 1.78
4378 4743 7.395489 AGAATGGACAGCTCAAGAAAAATATGT 59.605 33.333 0.00 0.00 0.00 2.29
4379 4744 8.579850 AATGGACAGCTCAAGAAAAATATGTA 57.420 30.769 0.00 0.00 0.00 2.29
4380 4745 7.377766 TGGACAGCTCAAGAAAAATATGTAC 57.622 36.000 0.00 0.00 0.00 2.90
4383 4748 7.750903 GGACAGCTCAAGAAAAATATGTACAAC 59.249 37.037 0.00 0.00 0.00 3.32
4384 4749 8.396272 ACAGCTCAAGAAAAATATGTACAACT 57.604 30.769 0.00 0.00 0.00 3.16
4385 4750 8.507249 ACAGCTCAAGAAAAATATGTACAACTC 58.493 33.333 0.00 0.00 0.00 3.01
4386 4751 8.506437 CAGCTCAAGAAAAATATGTACAACTCA 58.494 33.333 0.00 0.00 0.00 3.41
4411 4787 0.746923 GTGCAAGGGACGGATAACCC 60.747 60.000 0.00 0.00 45.88 4.11
4424 4800 3.353557 GGATAACCCTTTGTCCACCTTC 58.646 50.000 0.00 0.00 41.57 3.46
4425 4801 3.245122 GGATAACCCTTTGTCCACCTTCA 60.245 47.826 0.00 0.00 41.57 3.02
4426 4802 4.569865 GGATAACCCTTTGTCCACCTTCAT 60.570 45.833 0.00 0.00 41.57 2.57
4427 4803 2.586648 ACCCTTTGTCCACCTTCATC 57.413 50.000 0.00 0.00 0.00 2.92
4429 4805 1.075374 CCCTTTGTCCACCTTCATCCA 59.925 52.381 0.00 0.00 0.00 3.41
4430 4806 2.162681 CCTTTGTCCACCTTCATCCAC 58.837 52.381 0.00 0.00 0.00 4.02
4431 4807 2.488891 CCTTTGTCCACCTTCATCCACA 60.489 50.000 0.00 0.00 0.00 4.17
4432 4808 3.424703 CTTTGTCCACCTTCATCCACAT 58.575 45.455 0.00 0.00 0.00 3.21
4438 4814 5.476599 TGTCCACCTTCATCCACATAAAAAG 59.523 40.000 0.00 0.00 0.00 2.27
4439 4815 4.462483 TCCACCTTCATCCACATAAAAAGC 59.538 41.667 0.00 0.00 0.00 3.51
4440 4816 4.381932 CCACCTTCATCCACATAAAAAGCC 60.382 45.833 0.00 0.00 0.00 4.35
4441 4817 4.220382 CACCTTCATCCACATAAAAAGCCA 59.780 41.667 0.00 0.00 0.00 4.75
4442 4818 4.463891 ACCTTCATCCACATAAAAAGCCAG 59.536 41.667 0.00 0.00 0.00 4.85
4443 4819 4.427312 CTTCATCCACATAAAAAGCCAGC 58.573 43.478 0.00 0.00 0.00 4.85
4444 4820 2.760092 TCATCCACATAAAAAGCCAGCC 59.240 45.455 0.00 0.00 0.00 4.85
4445 4821 2.300956 TCCACATAAAAAGCCAGCCA 57.699 45.000 0.00 0.00 0.00 4.75
4446 4822 2.603021 TCCACATAAAAAGCCAGCCAA 58.397 42.857 0.00 0.00 0.00 4.52
4447 4823 2.562298 TCCACATAAAAAGCCAGCCAAG 59.438 45.455 0.00 0.00 0.00 3.61
4448 4824 2.299867 CCACATAAAAAGCCAGCCAAGT 59.700 45.455 0.00 0.00 0.00 3.16
4449 4825 3.578688 CACATAAAAAGCCAGCCAAGTC 58.421 45.455 0.00 0.00 0.00 3.01
4450 4826 3.005684 CACATAAAAAGCCAGCCAAGTCA 59.994 43.478 0.00 0.00 0.00 3.41
4451 4827 3.640967 ACATAAAAAGCCAGCCAAGTCAA 59.359 39.130 0.00 0.00 0.00 3.18
4452 4828 4.100808 ACATAAAAAGCCAGCCAAGTCAAA 59.899 37.500 0.00 0.00 0.00 2.69
4453 4829 2.602257 AAAAGCCAGCCAAGTCAAAC 57.398 45.000 0.00 0.00 0.00 2.93
4454 4830 0.385390 AAAGCCAGCCAAGTCAAACG 59.615 50.000 0.00 0.00 0.00 3.60
4455 4831 0.751643 AAGCCAGCCAAGTCAAACGT 60.752 50.000 0.00 0.00 0.00 3.99
4456 4832 0.751643 AGCCAGCCAAGTCAAACGTT 60.752 50.000 0.00 0.00 0.00 3.99
4457 4833 0.948678 GCCAGCCAAGTCAAACGTTA 59.051 50.000 0.00 0.00 0.00 3.18
4458 4834 1.069227 GCCAGCCAAGTCAAACGTTAG 60.069 52.381 0.00 0.00 0.00 2.34
4459 4835 2.489971 CCAGCCAAGTCAAACGTTAGA 58.510 47.619 0.00 0.00 0.00 2.10
4460 4836 2.875933 CCAGCCAAGTCAAACGTTAGAA 59.124 45.455 0.00 0.00 0.00 2.10
4461 4837 3.502211 CCAGCCAAGTCAAACGTTAGAAT 59.498 43.478 0.00 0.00 0.00 2.40
4462 4838 4.466828 CAGCCAAGTCAAACGTTAGAATG 58.533 43.478 0.00 0.00 0.00 2.67
4463 4839 4.213270 CAGCCAAGTCAAACGTTAGAATGA 59.787 41.667 0.00 0.00 0.00 2.57
4464 4840 4.213482 AGCCAAGTCAAACGTTAGAATGAC 59.787 41.667 18.71 18.71 41.88 3.06
4465 4841 4.024387 GCCAAGTCAAACGTTAGAATGACA 60.024 41.667 24.95 0.00 43.53 3.58
4466 4842 5.504994 GCCAAGTCAAACGTTAGAATGACAA 60.505 40.000 24.95 0.00 43.53 3.18
4467 4843 6.491394 CCAAGTCAAACGTTAGAATGACAAA 58.509 36.000 24.95 0.00 43.53 2.83
4468 4844 6.413818 CCAAGTCAAACGTTAGAATGACAAAC 59.586 38.462 24.95 6.44 43.53 2.93
4469 4845 6.671614 AGTCAAACGTTAGAATGACAAACA 57.328 33.333 24.95 0.00 43.53 2.83
4470 4846 7.259290 AGTCAAACGTTAGAATGACAAACAT 57.741 32.000 24.95 8.13 43.53 2.71
4471 4847 7.132213 AGTCAAACGTTAGAATGACAAACATG 58.868 34.615 24.95 6.98 43.53 3.21
4472 4848 6.910433 GTCAAACGTTAGAATGACAAACATGT 59.090 34.615 20.56 0.00 41.35 3.21
4473 4849 7.111593 GTCAAACGTTAGAATGACAAACATGTC 59.888 37.037 20.56 2.09 41.35 3.06
4486 4862 7.451429 TGACAAACATGTCAAAATGAAAAACG 58.549 30.769 9.07 0.00 44.73 3.60
4487 4863 7.116948 TGACAAACATGTCAAAATGAAAAACGT 59.883 29.630 9.07 0.00 44.73 3.99
4488 4864 7.801752 ACAAACATGTCAAAATGAAAAACGTT 58.198 26.923 0.00 0.00 0.00 3.99
4489 4865 8.926710 ACAAACATGTCAAAATGAAAAACGTTA 58.073 25.926 0.00 0.00 0.00 3.18
4490 4866 9.407514 CAAACATGTCAAAATGAAAAACGTTAG 57.592 29.630 0.00 0.00 0.00 2.34
4491 4867 8.918961 AACATGTCAAAATGAAAAACGTTAGA 57.081 26.923 0.00 0.00 0.00 2.10
4492 4868 8.918961 ACATGTCAAAATGAAAAACGTTAGAA 57.081 26.923 0.00 0.00 0.00 2.10
4493 4869 9.528018 ACATGTCAAAATGAAAAACGTTAGAAT 57.472 25.926 0.00 0.00 0.00 2.40
4496 4872 9.176181 TGTCAAAATGAAAAACGTTAGAATAGC 57.824 29.630 0.00 0.00 0.00 2.97
4497 4873 9.176181 GTCAAAATGAAAAACGTTAGAATAGCA 57.824 29.630 0.00 0.00 0.00 3.49
4498 4874 9.737427 TCAAAATGAAAAACGTTAGAATAGCAA 57.263 25.926 0.00 0.00 0.00 3.91
4501 4877 8.742554 AATGAAAAACGTTAGAATAGCAAAGG 57.257 30.769 0.00 0.00 0.00 3.11
4502 4878 7.266922 TGAAAAACGTTAGAATAGCAAAGGT 57.733 32.000 0.00 0.00 0.00 3.50
4503 4879 7.136119 TGAAAAACGTTAGAATAGCAAAGGTG 58.864 34.615 0.00 0.00 0.00 4.00
4504 4880 6.870971 AAAACGTTAGAATAGCAAAGGTGA 57.129 33.333 0.00 0.00 0.00 4.02
4505 4881 7.448748 AAAACGTTAGAATAGCAAAGGTGAT 57.551 32.000 0.00 0.00 0.00 3.06
4506 4882 6.422776 AACGTTAGAATAGCAAAGGTGATG 57.577 37.500 0.00 0.00 0.00 3.07
4507 4883 5.488341 ACGTTAGAATAGCAAAGGTGATGT 58.512 37.500 0.00 0.00 0.00 3.06
4508 4884 5.581085 ACGTTAGAATAGCAAAGGTGATGTC 59.419 40.000 0.00 0.00 0.00 3.06
4509 4885 5.580691 CGTTAGAATAGCAAAGGTGATGTCA 59.419 40.000 0.00 0.00 0.00 3.58
4510 4886 6.455646 CGTTAGAATAGCAAAGGTGATGTCAC 60.456 42.308 4.58 4.58 45.72 3.67
4511 4887 5.171339 AGAATAGCAAAGGTGATGTCACT 57.829 39.130 12.43 0.00 45.73 3.41
4512 4888 6.299805 AGAATAGCAAAGGTGATGTCACTA 57.700 37.500 12.43 0.00 45.73 2.74
4513 4889 6.711277 AGAATAGCAAAGGTGATGTCACTAA 58.289 36.000 12.43 0.00 45.73 2.24
4514 4890 6.820656 AGAATAGCAAAGGTGATGTCACTAAG 59.179 38.462 12.43 3.02 45.73 2.18
4515 4891 4.623932 AGCAAAGGTGATGTCACTAAGA 57.376 40.909 12.43 0.00 45.73 2.10
4516 4892 4.573900 AGCAAAGGTGATGTCACTAAGAG 58.426 43.478 12.43 2.13 45.73 2.85
4517 4893 3.126000 GCAAAGGTGATGTCACTAAGAGC 59.874 47.826 12.43 7.47 45.73 4.09
4518 4894 4.318332 CAAAGGTGATGTCACTAAGAGCA 58.682 43.478 12.43 0.00 45.73 4.26
4519 4895 4.833478 AAGGTGATGTCACTAAGAGCAT 57.167 40.909 12.43 0.00 45.73 3.79
4520 4896 4.399004 AGGTGATGTCACTAAGAGCATC 57.601 45.455 12.43 0.00 45.73 3.91
4522 4898 4.099266 AGGTGATGTCACTAAGAGCATCTC 59.901 45.833 12.43 0.00 45.91 2.75
4523 4899 4.367450 GTGATGTCACTAAGAGCATCTCC 58.633 47.826 5.91 0.00 44.22 3.71
4524 4900 4.142071 GTGATGTCACTAAGAGCATCTCCA 60.142 45.833 5.91 0.00 44.22 3.86
4525 4901 5.625426 GTGATGTCACTAAGAGCATCTCCAA 60.625 44.000 5.91 0.00 44.22 3.53
4526 4902 6.907514 GTGATGTCACTAAGAGCATCTCCAAT 60.908 42.308 5.91 0.00 44.22 3.16
4527 4903 7.685398 GTGATGTCACTAAGAGCATCTCCAATA 60.685 40.741 5.91 0.00 44.22 1.90
4534 4910 3.735237 GAGCATCTCCAATAAGTCCGA 57.265 47.619 0.00 0.00 0.00 4.55
4535 4911 3.385577 GAGCATCTCCAATAAGTCCGAC 58.614 50.000 0.00 0.00 0.00 4.79
4536 4912 2.766263 AGCATCTCCAATAAGTCCGACA 59.234 45.455 0.40 0.00 0.00 4.35
4537 4913 3.197766 AGCATCTCCAATAAGTCCGACAA 59.802 43.478 0.40 0.00 0.00 3.18
4538 4914 3.938963 GCATCTCCAATAAGTCCGACAAA 59.061 43.478 0.40 0.00 0.00 2.83
4539 4915 4.394920 GCATCTCCAATAAGTCCGACAAAA 59.605 41.667 0.40 0.00 0.00 2.44
4540 4916 5.066505 GCATCTCCAATAAGTCCGACAAAAT 59.933 40.000 0.40 0.00 0.00 1.82
4541 4917 6.719365 CATCTCCAATAAGTCCGACAAAATC 58.281 40.000 0.40 0.00 0.00 2.17
4542 4918 5.800296 TCTCCAATAAGTCCGACAAAATCA 58.200 37.500 0.40 0.00 0.00 2.57
4543 4919 6.414732 TCTCCAATAAGTCCGACAAAATCAT 58.585 36.000 0.40 0.00 0.00 2.45
4544 4920 6.884295 TCTCCAATAAGTCCGACAAAATCATT 59.116 34.615 0.40 0.00 0.00 2.57
4545 4921 7.393234 TCTCCAATAAGTCCGACAAAATCATTT 59.607 33.333 0.40 0.00 0.00 2.32
4546 4922 7.891561 TCCAATAAGTCCGACAAAATCATTTT 58.108 30.769 0.40 0.00 0.00 1.82
4547 4923 9.015367 TCCAATAAGTCCGACAAAATCATTTTA 57.985 29.630 0.40 0.00 0.00 1.52
4548 4924 9.072294 CCAATAAGTCCGACAAAATCATTTTAC 57.928 33.333 0.40 0.00 0.00 2.01
4549 4925 9.619316 CAATAAGTCCGACAAAATCATTTTACA 57.381 29.630 0.40 0.00 0.00 2.41
4553 4929 8.561738 AGTCCGACAAAATCATTTTACATACT 57.438 30.769 0.40 0.00 0.00 2.12
4554 4930 8.665685 AGTCCGACAAAATCATTTTACATACTC 58.334 33.333 0.40 0.00 0.00 2.59
4555 4931 7.908601 GTCCGACAAAATCATTTTACATACTCC 59.091 37.037 0.00 0.00 0.00 3.85
4556 4932 7.066525 TCCGACAAAATCATTTTACATACTCCC 59.933 37.037 0.00 0.00 0.00 4.30
4557 4933 7.067008 CCGACAAAATCATTTTACATACTCCCT 59.933 37.037 0.00 0.00 0.00 4.20
4558 4934 8.122952 CGACAAAATCATTTTACATACTCCCTC 58.877 37.037 0.00 0.00 0.00 4.30
4559 4935 8.293699 ACAAAATCATTTTACATACTCCCTCC 57.706 34.615 0.00 0.00 0.00 4.30
4560 4936 7.067008 ACAAAATCATTTTACATACTCCCTCCG 59.933 37.037 0.00 0.00 0.00 4.63
4561 4937 5.888982 ATCATTTTACATACTCCCTCCGT 57.111 39.130 0.00 0.00 0.00 4.69
4562 4938 5.272283 TCATTTTACATACTCCCTCCGTC 57.728 43.478 0.00 0.00 0.00 4.79
4563 4939 4.100498 TCATTTTACATACTCCCTCCGTCC 59.900 45.833 0.00 0.00 0.00 4.79
4564 4940 2.077687 TTACATACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
4565 4941 0.928505 TACATACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
4566 4942 0.264955 ACATACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
4567 4943 1.502039 ACATACTCCCTCCGTCCCATA 59.498 52.381 0.00 0.00 0.00 2.74
4568 4944 2.090943 ACATACTCCCTCCGTCCCATAA 60.091 50.000 0.00 0.00 0.00 1.90
4569 4945 3.173965 CATACTCCCTCCGTCCCATAAT 58.826 50.000 0.00 0.00 0.00 1.28
4570 4946 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
4571 4947 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
4572 4948 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
4573 4949 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
4574 4950 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
4575 4951 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
4576 4952 3.583086 CCCTCCGTCCCATAATGTAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
4577 4953 4.563580 CCCTCCGTCCCATAATGTAAGATG 60.564 50.000 0.00 0.00 0.00 2.90
4578 4954 4.040461 CCTCCGTCCCATAATGTAAGATGT 59.960 45.833 0.00 0.00 0.00 3.06
4579 4955 5.454755 CCTCCGTCCCATAATGTAAGATGTT 60.455 44.000 0.00 0.00 0.00 2.71
4580 4956 5.996644 TCCGTCCCATAATGTAAGATGTTT 58.003 37.500 0.00 0.00 0.00 2.83
4581 4957 6.419791 TCCGTCCCATAATGTAAGATGTTTT 58.580 36.000 0.00 0.00 0.00 2.43
4582 4958 6.887545 TCCGTCCCATAATGTAAGATGTTTTT 59.112 34.615 0.00 0.00 0.00 1.94
4636 5012 2.607750 TGGGACAGAGGGAGTGGC 60.608 66.667 0.00 0.00 0.00 5.01
4637 5013 2.284995 GGGACAGAGGGAGTGGCT 60.285 66.667 0.00 0.00 0.00 4.75
4638 5014 1.920835 GGGACAGAGGGAGTGGCTT 60.921 63.158 0.00 0.00 0.00 4.35
4639 5015 1.298014 GGACAGAGGGAGTGGCTTG 59.702 63.158 0.00 0.00 0.00 4.01
4640 5016 1.376553 GACAGAGGGAGTGGCTTGC 60.377 63.158 0.00 0.00 0.00 4.01
4641 5017 2.116983 GACAGAGGGAGTGGCTTGCA 62.117 60.000 0.00 0.00 0.00 4.08
4642 5018 1.302285 CAGAGGGAGTGGCTTGCAT 59.698 57.895 0.00 0.00 0.00 3.96
4643 5019 0.543277 CAGAGGGAGTGGCTTGCATA 59.457 55.000 0.00 0.00 0.00 3.14
4644 5020 1.065199 CAGAGGGAGTGGCTTGCATAA 60.065 52.381 0.00 0.00 0.00 1.90
4645 5021 1.065126 AGAGGGAGTGGCTTGCATAAC 60.065 52.381 0.00 0.00 0.00 1.89
4646 5022 0.995024 AGGGAGTGGCTTGCATAACT 59.005 50.000 0.00 0.00 0.00 2.24
4647 5023 1.355720 AGGGAGTGGCTTGCATAACTT 59.644 47.619 0.00 0.00 0.00 2.66
4648 5024 1.745653 GGGAGTGGCTTGCATAACTTC 59.254 52.381 0.00 0.00 0.00 3.01
4649 5025 2.619074 GGGAGTGGCTTGCATAACTTCT 60.619 50.000 0.00 0.00 0.00 2.85
4650 5026 2.680339 GGAGTGGCTTGCATAACTTCTC 59.320 50.000 0.00 0.00 0.00 2.87
4651 5027 2.349886 GAGTGGCTTGCATAACTTCTCG 59.650 50.000 0.00 0.00 0.00 4.04
4652 5028 1.398390 GTGGCTTGCATAACTTCTCGG 59.602 52.381 0.00 0.00 0.00 4.63
4653 5029 1.003118 TGGCTTGCATAACTTCTCGGT 59.997 47.619 0.00 0.00 0.00 4.69
4654 5030 2.084546 GGCTTGCATAACTTCTCGGTT 58.915 47.619 0.00 0.00 0.00 4.44
4655 5031 2.159517 GGCTTGCATAACTTCTCGGTTG 60.160 50.000 0.00 0.00 0.00 3.77
4656 5032 2.729156 GCTTGCATAACTTCTCGGTTGC 60.729 50.000 0.00 0.00 0.00 4.17
4657 5033 2.177394 TGCATAACTTCTCGGTTGCA 57.823 45.000 0.00 0.00 0.00 4.08
4658 5034 2.710377 TGCATAACTTCTCGGTTGCAT 58.290 42.857 0.00 0.00 0.00 3.96
4659 5035 3.081061 TGCATAACTTCTCGGTTGCATT 58.919 40.909 0.00 0.00 0.00 3.56
4660 5036 3.505680 TGCATAACTTCTCGGTTGCATTT 59.494 39.130 0.00 0.00 0.00 2.32
4661 5037 3.853671 GCATAACTTCTCGGTTGCATTTG 59.146 43.478 0.00 0.00 0.00 2.32
4662 5038 4.414852 CATAACTTCTCGGTTGCATTTGG 58.585 43.478 0.00 0.00 0.00 3.28
4663 5039 0.598065 ACTTCTCGGTTGCATTTGGC 59.402 50.000 0.00 0.00 45.13 4.52
4664 5040 0.109132 CTTCTCGGTTGCATTTGGCC 60.109 55.000 0.00 0.00 43.89 5.36
4665 5041 0.539438 TTCTCGGTTGCATTTGGCCT 60.539 50.000 3.32 0.00 43.89 5.19
4666 5042 0.539438 TCTCGGTTGCATTTGGCCTT 60.539 50.000 3.32 0.00 43.89 4.35
4667 5043 0.318120 CTCGGTTGCATTTGGCCTTT 59.682 50.000 3.32 0.00 43.89 3.11
4668 5044 0.033228 TCGGTTGCATTTGGCCTTTG 59.967 50.000 3.32 0.00 43.89 2.77
4669 5045 1.567746 CGGTTGCATTTGGCCTTTGC 61.568 55.000 15.47 15.47 43.89 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 0.888619 AGATCGACGACAGCTTTCCA 59.111 50.000 0.00 0.00 0.00 3.53
102 103 3.704231 CTCCATTGGCCACTCCCCG 62.704 68.421 3.88 0.00 0.00 5.73
255 256 7.094291 GGATCATCCATGATTTCCTTGAGAATC 60.094 40.741 0.00 0.00 46.84 2.52
293 294 3.364441 CGTACGTCACCCCGTCCA 61.364 66.667 7.22 0.00 42.00 4.02
633 671 9.778993 ATGAACAGAGAAAAATAATGATTCGTG 57.221 29.630 0.00 0.00 0.00 4.35
666 704 9.986833 TCATAATATTCAGACGACACAAAAATG 57.013 29.630 0.00 0.00 0.00 2.32
860 948 2.022240 CTCCCGGTTCAGCCTAGAGC 62.022 65.000 0.00 0.00 44.25 4.09
881 969 1.078918 GGCTTGGATGGGCTTTTGC 60.079 57.895 0.00 0.00 46.64 3.68
955 1050 0.103208 GGATTGCCGTCTCGTCTGAT 59.897 55.000 0.00 0.00 0.00 2.90
956 1051 1.511305 GGATTGCCGTCTCGTCTGA 59.489 57.895 0.00 0.00 0.00 3.27
957 1052 1.519455 GGGATTGCCGTCTCGTCTG 60.519 63.158 0.00 0.00 33.83 3.51
1480 1584 2.043227 GGCAGGCAGAAGTATCTAGGT 58.957 52.381 0.00 0.00 33.50 3.08
1482 1586 2.547642 GCAGGCAGGCAGAAGTATCTAG 60.548 54.545 0.00 0.00 33.50 2.43
1483 1587 1.414181 GCAGGCAGGCAGAAGTATCTA 59.586 52.381 0.00 0.00 33.50 1.98
1484 1588 0.179936 GCAGGCAGGCAGAAGTATCT 59.820 55.000 0.00 0.00 35.88 1.98
1485 1589 0.179936 AGCAGGCAGGCAGAAGTATC 59.820 55.000 0.00 0.00 35.83 2.24
1486 1590 0.622665 AAGCAGGCAGGCAGAAGTAT 59.377 50.000 0.00 0.00 35.83 2.12
1487 1591 0.036010 GAAGCAGGCAGGCAGAAGTA 60.036 55.000 0.00 0.00 35.83 2.24
1488 1592 1.303155 GAAGCAGGCAGGCAGAAGT 60.303 57.895 0.00 0.00 35.83 3.01
1491 1595 1.077930 GATGAAGCAGGCAGGCAGA 60.078 57.895 0.00 0.00 35.83 4.26
1530 1649 3.125146 TCATCGCCACAAAAATTCTCTCG 59.875 43.478 0.00 0.00 0.00 4.04
1537 1656 5.649782 AGAAGAATCATCGCCACAAAAAT 57.350 34.783 0.00 0.00 0.00 1.82
1560 1679 3.460103 GGCGAATTTACGATCCCTAACA 58.540 45.455 0.00 0.00 35.09 2.41
1631 1750 5.201910 CAATTTTTGTTCAACAGCAGCATG 58.798 37.500 0.00 0.00 40.87 4.06
1706 1832 2.388232 GGAATGCCACGACGACACC 61.388 63.158 0.00 0.00 0.00 4.16
1707 1833 0.949105 AAGGAATGCCACGACGACAC 60.949 55.000 0.00 0.00 36.29 3.67
1782 1909 5.099042 ACGCCAAGAGTAAACCATAGATT 57.901 39.130 0.00 0.00 0.00 2.40
1824 1951 9.092338 AGAGTAATGATATGATCAAGCTCTCTT 57.908 33.333 0.00 0.00 43.50 2.85
1920 2074 7.423199 CGAAGGAACTACACTAGCATGTAATA 58.577 38.462 0.00 0.00 38.49 0.98
1940 2094 2.347697 GCAAGTAAAAAGGGCGAAGG 57.652 50.000 0.00 0.00 0.00 3.46
1945 2099 1.816224 TCCATCGCAAGTAAAAAGGGC 59.184 47.619 0.00 0.00 39.48 5.19
1948 2102 4.261197 GGGCTATCCATCGCAAGTAAAAAG 60.261 45.833 0.00 0.00 35.09 2.27
1956 2111 2.099652 CTCCGGGCTATCCATCGCAA 62.100 60.000 0.00 0.00 34.36 4.85
1966 2121 2.242882 AAACCTTAGACTCCGGGCTA 57.757 50.000 0.00 0.00 0.00 3.93
1980 2135 1.640917 TGGGAGAGAAGCGTAAACCT 58.359 50.000 0.00 0.00 0.00 3.50
2065 2220 0.759346 AAGAGCACGGACCTGACTTT 59.241 50.000 0.00 0.00 0.00 2.66
2095 2250 6.663523 TCCATAATCAGAACTCACAGTCAGTA 59.336 38.462 0.00 0.00 0.00 2.74
2118 2273 2.025887 ACACCATGAAGATTCCCACTCC 60.026 50.000 0.00 0.00 0.00 3.85
2135 2290 5.801380 TGAATGGGTTAGAGAAGTTACACC 58.199 41.667 0.00 0.00 0.00 4.16
2325 2483 1.276140 TAATAGCACCAAGGGCCGGT 61.276 55.000 1.90 0.00 37.16 5.28
2330 2488 5.722021 AAACAAGTTAATAGCACCAAGGG 57.278 39.130 0.00 0.00 0.00 3.95
2513 2687 6.800072 AAATGAGGTAAAAGTGGAAACCAA 57.200 33.333 0.00 0.00 34.18 3.67
2556 2730 9.396022 TGGTTCATAAAAATAAAGGCAAAACAA 57.604 25.926 0.00 0.00 0.00 2.83
2588 2762 7.068839 ACTCGGAGAACATGTTGTAATAGATCT 59.931 37.037 17.58 2.90 34.09 2.75
2600 2774 4.608948 AAGAAGAACTCGGAGAACATGT 57.391 40.909 12.86 0.00 34.09 3.21
2642 2816 8.845227 TCAGTTCAATTCATTACAAACTAGCAA 58.155 29.630 0.00 0.00 0.00 3.91
2644 2818 9.334693 CTTCAGTTCAATTCATTACAAACTAGC 57.665 33.333 0.00 0.00 0.00 3.42
2760 2935 6.752168 TGAAATGCATCATCTCTCTATCGAA 58.248 36.000 0.00 0.00 0.00 3.71
2767 2942 7.244898 GCATATCTTGAAATGCATCATCTCTC 58.755 38.462 0.00 0.00 46.19 3.20
2777 2952 7.684062 AAAATACGTGCATATCTTGAAATGC 57.316 32.000 0.00 0.44 46.92 3.56
2791 2966 9.211556 GCTTTCTTCTTATCTTAAAATACGTGC 57.788 33.333 0.00 0.00 0.00 5.34
2812 2987 2.550830 TCCTCACCAGACAAGCTTTC 57.449 50.000 0.00 0.00 0.00 2.62
2816 2991 1.346068 ACTCTTCCTCACCAGACAAGC 59.654 52.381 0.00 0.00 0.00 4.01
2823 2998 1.079490 AGGATGGACTCTTCCTCACCA 59.921 52.381 0.00 0.00 41.96 4.17
2881 3075 6.204882 GCAGAACTTGTAGTCCACAAAACTAT 59.795 38.462 0.00 0.00 46.37 2.12
2900 3094 3.702045 AGGAGACCATACTGTAGCAGAAC 59.298 47.826 2.91 0.00 35.18 3.01
2934 3128 9.639601 CGGCATAAATTCATCTAGTATCTTACA 57.360 33.333 0.00 0.00 0.00 2.41
2945 3154 7.624360 TTTACACTTCGGCATAAATTCATCT 57.376 32.000 0.00 0.00 0.00 2.90
2978 3187 5.889853 TCCGAACTAGATCCTTTGCTTACTA 59.110 40.000 0.00 0.00 0.00 1.82
3009 3219 8.380644 CAGTACCAATGTAACATTCTTTCTACG 58.619 37.037 0.00 0.00 0.00 3.51
3037 3247 9.797642 TTCATCAAACAAGACTGCCATATATAT 57.202 29.630 0.00 0.00 0.00 0.86
3078 3291 9.448438 TGAACTACTTAATGTGTGCATATCTTT 57.552 29.630 0.00 0.00 34.39 2.52
3126 3339 4.387559 TGGCATTGTATCGCATATTCGTAC 59.612 41.667 0.00 0.00 0.00 3.67
3169 3382 3.173151 TCTCAGTATTCTGTGGCTTGGA 58.827 45.455 0.00 0.00 41.91 3.53
3173 3386 4.029520 ACAGATCTCAGTATTCTGTGGCT 58.970 43.478 4.15 0.00 46.19 4.75
3183 3406 2.024369 TGGGCCAGTACAGATCTCAGTA 60.024 50.000 0.00 0.00 0.00 2.74
3259 3485 3.785982 TGCCAGTAAGCACCGAGA 58.214 55.556 0.00 0.00 38.00 4.04
3307 3534 2.233186 TCTGTCAGATCTTCAGCCACTG 59.767 50.000 15.83 0.00 0.00 3.66
3311 3538 1.830477 ACCTCTGTCAGATCTTCAGCC 59.170 52.381 15.83 0.00 0.00 4.85
3312 3539 3.056250 TCAACCTCTGTCAGATCTTCAGC 60.056 47.826 15.83 0.00 0.00 4.26
3314 3541 4.155709 AGTCAACCTCTGTCAGATCTTCA 58.844 43.478 2.22 0.00 0.00 3.02
3315 3542 4.799564 AGTCAACCTCTGTCAGATCTTC 57.200 45.455 2.22 0.00 0.00 2.87
3316 3543 4.802248 GCAAGTCAACCTCTGTCAGATCTT 60.802 45.833 2.22 0.00 0.00 2.40
3317 3544 3.306641 GCAAGTCAACCTCTGTCAGATCT 60.307 47.826 2.22 0.00 0.00 2.75
3318 3545 2.999355 GCAAGTCAACCTCTGTCAGATC 59.001 50.000 2.22 0.00 0.00 2.75
3319 3546 2.636893 AGCAAGTCAACCTCTGTCAGAT 59.363 45.455 2.22 0.00 0.00 2.90
3320 3547 2.042464 AGCAAGTCAACCTCTGTCAGA 58.958 47.619 1.78 1.78 0.00 3.27
3321 3548 2.141517 CAGCAAGTCAACCTCTGTCAG 58.858 52.381 0.00 0.00 0.00 3.51
3322 3549 1.202687 CCAGCAAGTCAACCTCTGTCA 60.203 52.381 0.00 0.00 0.00 3.58
3323 3550 1.517242 CCAGCAAGTCAACCTCTGTC 58.483 55.000 0.00 0.00 0.00 3.51
3324 3551 0.536006 GCCAGCAAGTCAACCTCTGT 60.536 55.000 0.00 0.00 0.00 3.41
3325 3552 0.250640 AGCCAGCAAGTCAACCTCTG 60.251 55.000 0.00 0.00 0.00 3.35
3326 3553 0.475906 AAGCCAGCAAGTCAACCTCT 59.524 50.000 0.00 0.00 0.00 3.69
3327 3554 0.595095 CAAGCCAGCAAGTCAACCTC 59.405 55.000 0.00 0.00 0.00 3.85
3328 3555 0.106519 ACAAGCCAGCAAGTCAACCT 60.107 50.000 0.00 0.00 0.00 3.50
3329 3556 0.031178 CACAAGCCAGCAAGTCAACC 59.969 55.000 0.00 0.00 0.00 3.77
3330 3557 1.002033 CTCACAAGCCAGCAAGTCAAC 60.002 52.381 0.00 0.00 0.00 3.18
3331 3558 1.311859 CTCACAAGCCAGCAAGTCAA 58.688 50.000 0.00 0.00 0.00 3.18
3332 3559 0.181114 ACTCACAAGCCAGCAAGTCA 59.819 50.000 0.00 0.00 0.00 3.41
3333 3560 1.002033 CAACTCACAAGCCAGCAAGTC 60.002 52.381 0.00 0.00 0.00 3.01
3334 3561 1.027357 CAACTCACAAGCCAGCAAGT 58.973 50.000 0.00 0.00 0.00 3.16
3335 3562 0.318445 GCAACTCACAAGCCAGCAAG 60.318 55.000 0.00 0.00 0.00 4.01
3336 3563 1.735360 GCAACTCACAAGCCAGCAA 59.265 52.632 0.00 0.00 0.00 3.91
3337 3564 3.435590 GCAACTCACAAGCCAGCA 58.564 55.556 0.00 0.00 0.00 4.41
3342 3569 1.008079 GTGCTGGCAACTCACAAGC 60.008 57.895 0.00 0.00 39.46 4.01
3343 3570 0.309922 CAGTGCTGGCAACTCACAAG 59.690 55.000 14.02 5.22 41.21 3.16
3344 3571 0.394216 ACAGTGCTGGCAACTCACAA 60.394 50.000 14.02 0.00 41.21 3.33
3345 3572 0.467804 TACAGTGCTGGCAACTCACA 59.532 50.000 14.02 0.00 41.21 3.58
3346 3573 1.151668 CTACAGTGCTGGCAACTCAC 58.848 55.000 4.11 6.20 39.79 3.51
3359 3586 5.473504 CCTTTGGTTAGCAATCAACTACAGT 59.526 40.000 0.00 0.00 0.00 3.55
3361 3588 5.626142 TCCTTTGGTTAGCAATCAACTACA 58.374 37.500 0.00 0.00 0.00 2.74
3384 3611 7.018952 AGGAATAGGAATATTGGATGTCACCAT 59.981 37.037 0.00 0.00 39.82 3.55
3386 3613 6.656693 CAGGAATAGGAATATTGGATGTCACC 59.343 42.308 0.00 0.00 0.00 4.02
3393 3620 6.064060 CACAAGCAGGAATAGGAATATTGGA 58.936 40.000 0.00 0.00 0.00 3.53
3399 3626 3.019564 GCACACAAGCAGGAATAGGAAT 58.980 45.455 0.00 0.00 0.00 3.01
3454 3681 1.908299 TCAGCTTGAGCCGAGGTCA 60.908 57.895 0.00 2.27 43.38 4.02
3483 3710 8.515473 GTTAAAACCATATCAAACACTTGGTC 57.485 34.615 0.00 0.00 39.72 4.02
3516 3809 8.924691 CGGAAAAAGAATTTCTGAATGCATTAA 58.075 29.630 12.97 3.64 37.28 1.40
3531 3824 2.616842 ACGCACAACTCGGAAAAAGAAT 59.383 40.909 0.00 0.00 0.00 2.40
3574 3867 8.581057 ACTTCTCAACTGAACGCAATATATAG 57.419 34.615 0.00 0.00 0.00 1.31
3644 3985 2.158986 CGATGCCAAGAAGATCCTGAGT 60.159 50.000 0.00 0.00 0.00 3.41
3704 4045 4.526262 AGTTGCTTAGTGTCTCAGTCAGAT 59.474 41.667 0.00 0.00 32.08 2.90
3709 4050 4.586841 AGAAGAGTTGCTTAGTGTCTCAGT 59.413 41.667 0.00 0.00 36.83 3.41
3752 4101 7.588123 CAGTCTTGAGCTTACAGTGTATATACG 59.412 40.741 3.28 0.00 0.00 3.06
3771 4120 2.755650 ACCTCGCTGTTTACAGTCTTG 58.244 47.619 11.23 2.01 45.45 3.02
3881 4230 4.368808 CAGCAACGCAACGACCGG 62.369 66.667 0.00 0.00 0.00 5.28
3884 4233 1.083401 CAGTCAGCAACGCAACGAC 60.083 57.895 0.00 0.00 0.00 4.34
3905 4254 4.249638 ACTTTGCTGCTAATGGGGAATA 57.750 40.909 0.00 0.00 0.00 1.75
3922 4271 1.342174 CATGCCTGCCACTGAAACTTT 59.658 47.619 0.00 0.00 0.00 2.66
3938 4287 3.064545 GGTAGCAGTTGACATTCTCATGC 59.935 47.826 0.00 0.00 35.78 4.06
4048 4411 1.379916 CAGACCCTTCCCATGTGCA 59.620 57.895 0.00 0.00 0.00 4.57
4061 4424 0.310854 CCAAAACGTGAAGCCAGACC 59.689 55.000 0.00 0.00 0.00 3.85
4171 4534 1.880340 GCATCTCTGAAGGGACGCG 60.880 63.158 3.53 3.53 0.00 6.01
4225 4588 4.978099 ACAAGATGTCCTCTCACACAAAT 58.022 39.130 0.00 0.00 31.03 2.32
4236 4599 8.311395 TGATACTGAAATCTACAAGATGTCCT 57.689 34.615 4.94 0.00 38.03 3.85
4239 4602 8.932610 AGGATGATACTGAAATCTACAAGATGT 58.067 33.333 0.00 0.00 34.65 3.06
4243 4607 8.637099 TCAGAGGATGATACTGAAATCTACAAG 58.363 37.037 0.00 0.00 37.66 3.16
4303 4667 5.278315 CCTGCCTACTTTGTTTAACAAGTCC 60.278 44.000 10.51 5.25 39.53 3.85
4321 4686 5.071653 ACCAAACAAATTCATTAACCTGCCT 59.928 36.000 0.00 0.00 0.00 4.75
4368 4733 9.559958 CACAATCCTGAGTTGTACATATTTTTC 57.440 33.333 0.00 0.00 37.69 2.29
4376 4741 3.483808 TGCACAATCCTGAGTTGTACA 57.516 42.857 0.00 0.00 37.69 2.90
4377 4742 3.189287 CCTTGCACAATCCTGAGTTGTAC 59.811 47.826 0.00 0.00 37.69 2.90
4378 4743 3.411446 CCTTGCACAATCCTGAGTTGTA 58.589 45.455 0.00 0.00 37.69 2.41
4379 4744 2.233271 CCTTGCACAATCCTGAGTTGT 58.767 47.619 0.00 0.00 40.23 3.32
4380 4745 1.542915 CCCTTGCACAATCCTGAGTTG 59.457 52.381 0.00 0.00 0.00 3.16
4383 4748 1.457346 GTCCCTTGCACAATCCTGAG 58.543 55.000 0.00 0.00 0.00 3.35
4384 4749 0.321564 CGTCCCTTGCACAATCCTGA 60.322 55.000 0.00 0.00 0.00 3.86
4385 4750 1.308069 CCGTCCCTTGCACAATCCTG 61.308 60.000 0.00 0.00 0.00 3.86
4386 4751 1.002134 CCGTCCCTTGCACAATCCT 60.002 57.895 0.00 0.00 0.00 3.24
4411 4787 2.862541 TGTGGATGAAGGTGGACAAAG 58.137 47.619 0.00 0.00 0.00 2.77
4424 4800 2.496871 TGGCTGGCTTTTTATGTGGATG 59.503 45.455 2.00 0.00 0.00 3.51
4425 4801 2.818921 TGGCTGGCTTTTTATGTGGAT 58.181 42.857 2.00 0.00 0.00 3.41
4426 4802 2.300956 TGGCTGGCTTTTTATGTGGA 57.699 45.000 2.00 0.00 0.00 4.02
4427 4803 2.299867 ACTTGGCTGGCTTTTTATGTGG 59.700 45.455 2.00 0.00 0.00 4.17
4429 4805 3.230134 TGACTTGGCTGGCTTTTTATGT 58.770 40.909 2.00 0.00 0.00 2.29
4430 4806 3.940209 TGACTTGGCTGGCTTTTTATG 57.060 42.857 2.00 0.00 0.00 1.90
4431 4807 4.631131 GTTTGACTTGGCTGGCTTTTTAT 58.369 39.130 2.00 0.00 0.00 1.40
4432 4808 3.490078 CGTTTGACTTGGCTGGCTTTTTA 60.490 43.478 2.00 0.00 0.00 1.52
4438 4814 0.948678 TAACGTTTGACTTGGCTGGC 59.051 50.000 5.91 0.00 0.00 4.85
4439 4815 2.489971 TCTAACGTTTGACTTGGCTGG 58.510 47.619 5.91 0.00 0.00 4.85
4440 4816 4.213270 TCATTCTAACGTTTGACTTGGCTG 59.787 41.667 12.01 4.25 0.00 4.85
4441 4817 4.213482 GTCATTCTAACGTTTGACTTGGCT 59.787 41.667 18.96 0.00 36.43 4.75
4442 4818 4.024387 TGTCATTCTAACGTTTGACTTGGC 60.024 41.667 23.89 19.38 39.33 4.52
4443 4819 5.666969 TGTCATTCTAACGTTTGACTTGG 57.333 39.130 23.89 10.80 39.33 3.61
4444 4820 6.964370 TGTTTGTCATTCTAACGTTTGACTTG 59.036 34.615 23.89 18.24 39.33 3.16
4445 4821 7.079182 TGTTTGTCATTCTAACGTTTGACTT 57.921 32.000 23.89 9.54 39.33 3.01
4446 4822 6.671614 TGTTTGTCATTCTAACGTTTGACT 57.328 33.333 23.89 12.94 39.33 3.41
4447 4823 6.910433 ACATGTTTGTCATTCTAACGTTTGAC 59.090 34.615 19.27 19.27 39.11 3.18
4448 4824 7.022055 ACATGTTTGTCATTCTAACGTTTGA 57.978 32.000 5.91 7.34 35.24 2.69
4463 4839 7.357951 ACGTTTTTCATTTTGACATGTTTGT 57.642 28.000 0.00 0.00 39.32 2.83
4464 4840 9.407514 CTAACGTTTTTCATTTTGACATGTTTG 57.592 29.630 5.91 0.00 0.00 2.93
4465 4841 9.360093 TCTAACGTTTTTCATTTTGACATGTTT 57.640 25.926 5.91 0.00 0.00 2.83
4466 4842 8.918961 TCTAACGTTTTTCATTTTGACATGTT 57.081 26.923 5.91 0.00 0.00 2.71
4467 4843 8.918961 TTCTAACGTTTTTCATTTTGACATGT 57.081 26.923 5.91 0.00 0.00 3.21
4470 4846 9.176181 GCTATTCTAACGTTTTTCATTTTGACA 57.824 29.630 5.91 0.00 0.00 3.58
4471 4847 9.176181 TGCTATTCTAACGTTTTTCATTTTGAC 57.824 29.630 5.91 0.00 0.00 3.18
4472 4848 9.737427 TTGCTATTCTAACGTTTTTCATTTTGA 57.263 25.926 5.91 0.00 0.00 2.69
4475 4851 9.191995 CCTTTGCTATTCTAACGTTTTTCATTT 57.808 29.630 5.91 0.00 0.00 2.32
4476 4852 8.357402 ACCTTTGCTATTCTAACGTTTTTCATT 58.643 29.630 5.91 0.00 0.00 2.57
4477 4853 7.807907 CACCTTTGCTATTCTAACGTTTTTCAT 59.192 33.333 5.91 0.00 0.00 2.57
4478 4854 7.012515 TCACCTTTGCTATTCTAACGTTTTTCA 59.987 33.333 5.91 0.00 0.00 2.69
4479 4855 7.357303 TCACCTTTGCTATTCTAACGTTTTTC 58.643 34.615 5.91 0.00 0.00 2.29
4480 4856 7.266922 TCACCTTTGCTATTCTAACGTTTTT 57.733 32.000 5.91 0.00 0.00 1.94
4481 4857 6.870971 TCACCTTTGCTATTCTAACGTTTT 57.129 33.333 5.91 0.00 0.00 2.43
4482 4858 6.430000 ACATCACCTTTGCTATTCTAACGTTT 59.570 34.615 5.91 0.00 0.00 3.60
4483 4859 5.938125 ACATCACCTTTGCTATTCTAACGTT 59.062 36.000 5.88 5.88 0.00 3.99
4484 4860 5.488341 ACATCACCTTTGCTATTCTAACGT 58.512 37.500 0.00 0.00 0.00 3.99
4485 4861 5.580691 TGACATCACCTTTGCTATTCTAACG 59.419 40.000 0.00 0.00 0.00 3.18
4486 4862 6.776094 GTGACATCACCTTTGCTATTCTAAC 58.224 40.000 0.18 0.00 40.85 2.34
4487 4863 6.985188 GTGACATCACCTTTGCTATTCTAA 57.015 37.500 0.18 0.00 40.85 2.10
4501 4877 4.142071 TGGAGATGCTCTTAGTGACATCAC 60.142 45.833 3.72 3.72 46.77 3.06
4502 4878 4.026052 TGGAGATGCTCTTAGTGACATCA 58.974 43.478 15.34 0.00 41.08 3.07
4503 4879 4.662468 TGGAGATGCTCTTAGTGACATC 57.338 45.455 9.16 9.16 39.35 3.06
4504 4880 5.627182 ATTGGAGATGCTCTTAGTGACAT 57.373 39.130 0.00 0.00 0.00 3.06
4505 4881 6.155221 ACTTATTGGAGATGCTCTTAGTGACA 59.845 38.462 0.00 0.00 0.00 3.58
4506 4882 6.578023 ACTTATTGGAGATGCTCTTAGTGAC 58.422 40.000 0.00 0.00 0.00 3.67
4507 4883 6.183360 GGACTTATTGGAGATGCTCTTAGTGA 60.183 42.308 0.00 0.00 0.00 3.41
4508 4884 5.988561 GGACTTATTGGAGATGCTCTTAGTG 59.011 44.000 0.00 0.00 0.00 2.74
4509 4885 5.221342 CGGACTTATTGGAGATGCTCTTAGT 60.221 44.000 0.00 0.00 0.00 2.24
4510 4886 5.010112 TCGGACTTATTGGAGATGCTCTTAG 59.990 44.000 0.00 0.00 0.00 2.18
4511 4887 4.893524 TCGGACTTATTGGAGATGCTCTTA 59.106 41.667 0.00 0.00 0.00 2.10
4512 4888 3.706594 TCGGACTTATTGGAGATGCTCTT 59.293 43.478 0.00 0.00 0.00 2.85
4513 4889 3.068873 GTCGGACTTATTGGAGATGCTCT 59.931 47.826 0.00 0.00 0.00 4.09
4514 4890 3.181475 TGTCGGACTTATTGGAGATGCTC 60.181 47.826 9.88 0.00 0.00 4.26
4515 4891 2.766263 TGTCGGACTTATTGGAGATGCT 59.234 45.455 9.88 0.00 0.00 3.79
4516 4892 3.179443 TGTCGGACTTATTGGAGATGC 57.821 47.619 9.88 0.00 0.00 3.91
4517 4893 6.316140 TGATTTTGTCGGACTTATTGGAGATG 59.684 38.462 9.88 0.00 0.00 2.90
4518 4894 6.414732 TGATTTTGTCGGACTTATTGGAGAT 58.585 36.000 9.88 0.00 0.00 2.75
4519 4895 5.800296 TGATTTTGTCGGACTTATTGGAGA 58.200 37.500 9.88 0.00 0.00 3.71
4520 4896 6.683974 ATGATTTTGTCGGACTTATTGGAG 57.316 37.500 9.88 0.00 0.00 3.86
4521 4897 7.461182 AAATGATTTTGTCGGACTTATTGGA 57.539 32.000 9.88 0.00 0.00 3.53
4522 4898 9.072294 GTAAAATGATTTTGTCGGACTTATTGG 57.928 33.333 13.08 0.00 34.19 3.16
4523 4899 9.619316 TGTAAAATGATTTTGTCGGACTTATTG 57.381 29.630 13.08 0.00 34.19 1.90
4527 4903 9.010029 AGTATGTAAAATGATTTTGTCGGACTT 57.990 29.630 13.08 4.31 34.19 3.01
4528 4904 8.561738 AGTATGTAAAATGATTTTGTCGGACT 57.438 30.769 13.08 7.16 34.19 3.85
4529 4905 7.908601 GGAGTATGTAAAATGATTTTGTCGGAC 59.091 37.037 13.08 0.00 34.19 4.79
4530 4906 7.066525 GGGAGTATGTAAAATGATTTTGTCGGA 59.933 37.037 13.08 0.00 34.19 4.55
4531 4907 7.067008 AGGGAGTATGTAAAATGATTTTGTCGG 59.933 37.037 13.08 0.00 34.19 4.79
4532 4908 7.985476 AGGGAGTATGTAAAATGATTTTGTCG 58.015 34.615 13.08 0.00 34.19 4.35
4533 4909 8.406297 GGAGGGAGTATGTAAAATGATTTTGTC 58.594 37.037 13.08 6.98 34.19 3.18
4534 4910 7.067008 CGGAGGGAGTATGTAAAATGATTTTGT 59.933 37.037 13.08 2.56 34.19 2.83
4535 4911 7.067008 ACGGAGGGAGTATGTAAAATGATTTTG 59.933 37.037 13.08 0.00 34.19 2.44
4536 4912 7.116736 ACGGAGGGAGTATGTAAAATGATTTT 58.883 34.615 8.35 8.35 36.67 1.82
4537 4913 6.659824 ACGGAGGGAGTATGTAAAATGATTT 58.340 36.000 0.00 0.00 0.00 2.17
4538 4914 6.248569 ACGGAGGGAGTATGTAAAATGATT 57.751 37.500 0.00 0.00 0.00 2.57
4539 4915 5.221661 GGACGGAGGGAGTATGTAAAATGAT 60.222 44.000 0.00 0.00 0.00 2.45
4540 4916 4.100498 GGACGGAGGGAGTATGTAAAATGA 59.900 45.833 0.00 0.00 0.00 2.57
4541 4917 4.377897 GGACGGAGGGAGTATGTAAAATG 58.622 47.826 0.00 0.00 0.00 2.32
4542 4918 3.390311 GGGACGGAGGGAGTATGTAAAAT 59.610 47.826 0.00 0.00 0.00 1.82
4543 4919 2.767960 GGGACGGAGGGAGTATGTAAAA 59.232 50.000 0.00 0.00 0.00 1.52
4544 4920 2.292389 TGGGACGGAGGGAGTATGTAAA 60.292 50.000 0.00 0.00 0.00 2.01
4545 4921 1.288633 TGGGACGGAGGGAGTATGTAA 59.711 52.381 0.00 0.00 0.00 2.41
4546 4922 0.928505 TGGGACGGAGGGAGTATGTA 59.071 55.000 0.00 0.00 0.00 2.29
4547 4923 0.264955 ATGGGACGGAGGGAGTATGT 59.735 55.000 0.00 0.00 0.00 2.29
4548 4924 2.304221 TATGGGACGGAGGGAGTATG 57.696 55.000 0.00 0.00 0.00 2.39
4549 4925 3.173965 CATTATGGGACGGAGGGAGTAT 58.826 50.000 0.00 0.00 0.00 2.12
4550 4926 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
4551 4927 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
4552 4928 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
4553 4929 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
4554 4930 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
4555 4931 4.040461 ACATCTTACATTATGGGACGGAGG 59.960 45.833 0.00 0.00 0.00 4.30
4556 4932 5.215252 ACATCTTACATTATGGGACGGAG 57.785 43.478 0.00 0.00 0.00 4.63
4557 4933 5.623956 AACATCTTACATTATGGGACGGA 57.376 39.130 0.00 0.00 0.00 4.69
4558 4934 6.693315 AAAACATCTTACATTATGGGACGG 57.307 37.500 0.00 0.00 0.00 4.79
4602 4978 8.877864 TCTGTCCCATAATGTAAGATGTTTTT 57.122 30.769 0.00 0.00 0.00 1.94
4603 4979 7.557719 CCTCTGTCCCATAATGTAAGATGTTTT 59.442 37.037 0.00 0.00 0.00 2.43
4604 4980 7.056635 CCTCTGTCCCATAATGTAAGATGTTT 58.943 38.462 0.00 0.00 0.00 2.83
4605 4981 6.409695 CCCTCTGTCCCATAATGTAAGATGTT 60.410 42.308 0.00 0.00 0.00 2.71
4606 4982 5.072329 CCCTCTGTCCCATAATGTAAGATGT 59.928 44.000 0.00 0.00 0.00 3.06
4607 4983 5.307976 TCCCTCTGTCCCATAATGTAAGATG 59.692 44.000 0.00 0.00 0.00 2.90
4608 4984 5.476983 TCCCTCTGTCCCATAATGTAAGAT 58.523 41.667 0.00 0.00 0.00 2.40
4609 4985 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
4610 4986 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
4611 4987 4.408921 CACTCCCTCTGTCCCATAATGTAA 59.591 45.833 0.00 0.00 0.00 2.41
4612 4988 3.967326 CACTCCCTCTGTCCCATAATGTA 59.033 47.826 0.00 0.00 0.00 2.29
4613 4989 2.774234 CACTCCCTCTGTCCCATAATGT 59.226 50.000 0.00 0.00 0.00 2.71
4614 4990 2.105477 CCACTCCCTCTGTCCCATAATG 59.895 54.545 0.00 0.00 0.00 1.90
4615 4991 2.412591 CCACTCCCTCTGTCCCATAAT 58.587 52.381 0.00 0.00 0.00 1.28
4616 4992 1.879575 CCACTCCCTCTGTCCCATAA 58.120 55.000 0.00 0.00 0.00 1.90
4617 4993 0.691078 GCCACTCCCTCTGTCCCATA 60.691 60.000 0.00 0.00 0.00 2.74
4618 4994 1.997874 GCCACTCCCTCTGTCCCAT 60.998 63.158 0.00 0.00 0.00 4.00
4619 4995 2.607750 GCCACTCCCTCTGTCCCA 60.608 66.667 0.00 0.00 0.00 4.37
4620 4996 1.920835 AAGCCACTCCCTCTGTCCC 60.921 63.158 0.00 0.00 0.00 4.46
4621 4997 1.298014 CAAGCCACTCCCTCTGTCC 59.702 63.158 0.00 0.00 0.00 4.02
4622 4998 1.376553 GCAAGCCACTCCCTCTGTC 60.377 63.158 0.00 0.00 0.00 3.51
4623 4999 1.495579 ATGCAAGCCACTCCCTCTGT 61.496 55.000 0.00 0.00 0.00 3.41
4624 5000 0.543277 TATGCAAGCCACTCCCTCTG 59.457 55.000 0.00 0.00 0.00 3.35
4625 5001 1.065126 GTTATGCAAGCCACTCCCTCT 60.065 52.381 0.00 0.00 0.00 3.69
4626 5002 1.065126 AGTTATGCAAGCCACTCCCTC 60.065 52.381 0.00 0.00 0.00 4.30
4627 5003 0.995024 AGTTATGCAAGCCACTCCCT 59.005 50.000 0.00 0.00 0.00 4.20
4628 5004 1.745653 GAAGTTATGCAAGCCACTCCC 59.254 52.381 0.00 0.00 0.00 4.30
4629 5005 2.680339 GAGAAGTTATGCAAGCCACTCC 59.320 50.000 0.00 0.00 0.00 3.85
4630 5006 2.349886 CGAGAAGTTATGCAAGCCACTC 59.650 50.000 0.00 0.00 0.00 3.51
4631 5007 2.350522 CGAGAAGTTATGCAAGCCACT 58.649 47.619 0.00 0.00 0.00 4.00
4632 5008 1.398390 CCGAGAAGTTATGCAAGCCAC 59.602 52.381 0.00 0.00 0.00 5.01
4633 5009 1.003118 ACCGAGAAGTTATGCAAGCCA 59.997 47.619 0.00 0.00 0.00 4.75
4634 5010 1.739067 ACCGAGAAGTTATGCAAGCC 58.261 50.000 0.00 0.00 0.00 4.35
4635 5011 2.729156 GCAACCGAGAAGTTATGCAAGC 60.729 50.000 0.00 0.00 0.00 4.01
4636 5012 2.483877 TGCAACCGAGAAGTTATGCAAG 59.516 45.455 0.00 0.00 28.93 4.01
4637 5013 2.499197 TGCAACCGAGAAGTTATGCAA 58.501 42.857 0.00 0.00 28.93 4.08
4638 5014 2.177394 TGCAACCGAGAAGTTATGCA 57.823 45.000 0.00 0.00 0.00 3.96
4639 5015 3.764885 AATGCAACCGAGAAGTTATGC 57.235 42.857 0.00 0.00 0.00 3.14
4640 5016 4.414852 CCAAATGCAACCGAGAAGTTATG 58.585 43.478 0.00 0.00 0.00 1.90
4641 5017 3.119495 GCCAAATGCAACCGAGAAGTTAT 60.119 43.478 0.00 0.00 40.77 1.89
4642 5018 2.227865 GCCAAATGCAACCGAGAAGTTA 59.772 45.455 0.00 0.00 40.77 2.24
4643 5019 1.000274 GCCAAATGCAACCGAGAAGTT 60.000 47.619 0.00 0.00 40.77 2.66
4644 5020 0.598065 GCCAAATGCAACCGAGAAGT 59.402 50.000 0.00 0.00 40.77 3.01
4645 5021 0.109132 GGCCAAATGCAACCGAGAAG 60.109 55.000 0.00 0.00 43.89 2.85
4646 5022 0.539438 AGGCCAAATGCAACCGAGAA 60.539 50.000 5.01 0.00 43.89 2.87
4647 5023 0.539438 AAGGCCAAATGCAACCGAGA 60.539 50.000 5.01 0.00 43.89 4.04
4648 5024 0.318120 AAAGGCCAAATGCAACCGAG 59.682 50.000 5.01 0.00 43.89 4.63
4649 5025 0.033228 CAAAGGCCAAATGCAACCGA 59.967 50.000 5.01 0.00 43.89 4.69
4650 5026 1.567746 GCAAAGGCCAAATGCAACCG 61.568 55.000 18.99 0.00 43.89 4.44
4651 5027 2.246841 GCAAAGGCCAAATGCAACC 58.753 52.632 18.99 0.00 43.89 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.