Multiple sequence alignment - TraesCS2D01G076500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G076500 chr2D 100.000 2330 0 0 1 2330 32641696 32639367 0.000000e+00 4303.0
1 TraesCS2D01G076500 chr2D 100.000 1568 0 0 2668 4235 32639029 32637462 0.000000e+00 2896.0
2 TraesCS2D01G076500 chr2D 92.268 194 9 5 157 346 55555606 55555415 1.940000e-68 270.0
3 TraesCS2D01G076500 chr2D 92.308 195 8 5 157 346 146424201 146424009 1.940000e-68 270.0
4 TraesCS2D01G076500 chr2D 84.959 246 35 2 2043 2287 32638983 32638739 9.090000e-62 248.0
5 TraesCS2D01G076500 chr2D 84.959 246 35 2 2714 2958 32639654 32639410 9.090000e-62 248.0
6 TraesCS2D01G076500 chr2D 88.265 196 21 2 2668 2862 32638933 32638739 2.550000e-57 233.0
7 TraesCS2D01G076500 chr2D 88.265 196 21 2 2764 2958 32639029 32638835 2.550000e-57 233.0
8 TraesCS2D01G076500 chr2D 82.288 271 21 13 748 1007 32646284 32646030 4.290000e-50 209.0
9 TraesCS2D01G076500 chr2A 90.391 1842 120 25 448 2269 35952568 35950764 0.000000e+00 2368.0
10 TraesCS2D01G076500 chr2A 90.137 730 66 4 2670 3398 35950592 35949868 0.000000e+00 944.0
11 TraesCS2D01G076500 chr2A 96.289 539 16 3 3698 4235 723141747 723142282 0.000000e+00 881.0
12 TraesCS2D01G076500 chr2A 95.362 539 22 3 3698 4235 58916223 58915687 0.000000e+00 854.0
13 TraesCS2D01G076500 chr2A 84.314 306 24 13 736 1030 35957727 35957435 1.160000e-70 278.0
14 TraesCS2D01G076500 chr2A 84.681 235 36 0 2043 2277 35950548 35950314 7.080000e-58 235.0
15 TraesCS2D01G076500 chr2A 79.048 210 29 8 2136 2330 35951008 35950799 3.440000e-26 130.0
16 TraesCS2D01G076500 chr2A 90.000 90 9 0 2668 2757 35950402 35950313 2.680000e-22 117.0
17 TraesCS2D01G076500 chr2A 76.923 234 27 9 1899 2132 35957432 35957226 1.610000e-19 108.0
18 TraesCS2D01G076500 chr2B 90.707 1571 98 19 642 2185 54273267 54271718 0.000000e+00 2049.0
19 TraesCS2D01G076500 chr2B 86.108 835 89 18 2668 3485 54271588 54270764 0.000000e+00 874.0
20 TraesCS2D01G076500 chr2B 82.065 552 70 18 3691 4234 578589727 578589197 1.080000e-120 444.0
21 TraesCS2D01G076500 chr2B 81.188 505 57 16 556 1031 54281560 54281065 5.170000e-99 372.0
22 TraesCS2D01G076500 chr2B 88.832 197 22 0 2043 2239 54271542 54271346 4.230000e-60 243.0
23 TraesCS2D01G076500 chr2B 85.455 220 22 4 432 651 54274172 54273963 1.980000e-53 220.0
24 TraesCS2D01G076500 chr2B 92.647 68 5 0 3698 3765 144403292 144403359 9.690000e-17 99.0
25 TraesCS2D01G076500 chr2B 90.000 50 5 0 2040 2089 54271767 54271718 9.830000e-07 65.8
26 TraesCS2D01G076500 chr4A 96.310 542 16 2 3698 4235 509637071 509637612 0.000000e+00 887.0
27 TraesCS2D01G076500 chr7A 95.547 539 22 2 3698 4235 179392495 179391958 0.000000e+00 861.0
28 TraesCS2D01G076500 chr3B 92.365 537 35 4 3698 4233 280837895 280838426 0.000000e+00 760.0
29 TraesCS2D01G076500 chr3B 94.086 186 6 4 157 338 172490370 172490554 1.160000e-70 278.0
30 TraesCS2D01G076500 chr7B 94.406 286 2 1 3950 4235 72179437 72179166 1.090000e-115 427.0
31 TraesCS2D01G076500 chr7B 96.111 180 5 2 3698 3877 72179786 72179609 4.140000e-75 292.0
32 TraesCS2D01G076500 chr1B 94.118 289 3 1 3947 4235 664781457 664781731 1.090000e-115 427.0
33 TraesCS2D01G076500 chr1B 98.214 168 3 0 3697 3864 664781109 664781276 1.150000e-75 294.0
34 TraesCS2D01G076500 chr6B 83.028 436 54 12 3803 4233 41621513 41621093 1.110000e-100 377.0
35 TraesCS2D01G076500 chr6B 78.607 201 33 8 3698 3892 29589485 29589289 1.600000e-24 124.0
36 TraesCS2D01G076500 chr3D 79.190 543 67 24 3716 4231 523846036 523845513 6.780000e-88 335.0
37 TraesCS2D01G076500 chr3D 81.347 386 48 17 3712 4092 523901148 523900782 4.140000e-75 292.0
38 TraesCS2D01G076500 chr3D 82.178 101 11 4 3600 3700 597933595 597933502 3.510000e-11 80.5
39 TraesCS2D01G076500 chr6D 93.651 189 7 4 157 341 330383623 330383436 1.160000e-70 278.0
40 TraesCS2D01G076500 chr6D 93.548 186 8 3 157 338 374071745 374071930 1.500000e-69 274.0
41 TraesCS2D01G076500 chr6D 92.268 194 9 5 157 346 411102825 411103016 1.940000e-68 270.0
42 TraesCS2D01G076500 chr4D 93.085 188 9 4 157 341 327197144 327196958 5.400000e-69 272.0
43 TraesCS2D01G076500 chr1D 93.548 186 7 4 157 338 66863975 66864159 5.400000e-69 272.0
44 TraesCS2D01G076500 chr1D 93.514 185 9 3 157 338 100523652 100523836 5.400000e-69 272.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G076500 chr2D 32637462 32641696 4234 True 1360.166667 4303 91.074667 1 4235 6 chr2D.!!$R4 4234
1 TraesCS2D01G076500 chr2A 723141747 723142282 535 False 881.000000 881 96.289000 3698 4235 1 chr2A.!!$F1 537
2 TraesCS2D01G076500 chr2A 58915687 58916223 536 True 854.000000 854 95.362000 3698 4235 1 chr2A.!!$R1 537
3 TraesCS2D01G076500 chr2A 35949868 35952568 2700 True 758.800000 2368 86.851400 448 3398 5 chr2A.!!$R2 2950
4 TraesCS2D01G076500 chr2B 54270764 54274172 3408 True 690.360000 2049 88.220400 432 3485 5 chr2B.!!$R3 3053
5 TraesCS2D01G076500 chr2B 578589197 578589727 530 True 444.000000 444 82.065000 3691 4234 1 chr2B.!!$R2 543
6 TraesCS2D01G076500 chr4A 509637071 509637612 541 False 887.000000 887 96.310000 3698 4235 1 chr4A.!!$F1 537
7 TraesCS2D01G076500 chr7A 179391958 179392495 537 True 861.000000 861 95.547000 3698 4235 1 chr7A.!!$R1 537
8 TraesCS2D01G076500 chr3B 280837895 280838426 531 False 760.000000 760 92.365000 3698 4233 1 chr3B.!!$F2 535
9 TraesCS2D01G076500 chr7B 72179166 72179786 620 True 359.500000 427 95.258500 3698 4235 2 chr7B.!!$R1 537
10 TraesCS2D01G076500 chr1B 664781109 664781731 622 False 360.500000 427 96.166000 3697 4235 2 chr1B.!!$F1 538
11 TraesCS2D01G076500 chr3D 523845513 523846036 523 True 335.000000 335 79.190000 3716 4231 1 chr3D.!!$R1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
690 1398 0.180406 AGAGCCGTGTTGTCCAAGTT 59.820 50.0 0.00 0.00 0.00 2.66 F
1177 1919 0.396435 TGAGCACGGATGAGTTGGTT 59.604 50.0 0.00 0.00 0.00 3.67 F
1196 1941 0.847670 TACGTTCTTGCGTGTTCGTG 59.152 50.0 0.00 0.00 45.33 4.35 F
2287 3083 0.972983 CACCACCAGTCGAGGATCCT 60.973 60.0 16.13 16.13 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 2557 0.522180 GACGTCACACTCGATGTCCT 59.478 55.000 11.55 0.00 43.31 3.85 R
2257 3053 2.034221 GGTGGTGGCTCCTCAACC 59.966 66.667 7.19 2.58 37.07 3.77 R
2735 3531 2.358737 GTGGTGGCTCCTCAACCG 60.359 66.667 7.19 0.00 37.07 4.44 R
3694 4514 0.032130 GCCGGCGATGATCTAGTTGA 59.968 55.000 12.58 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.835113 AATGTAATTAAGCCATCAAGCGT 57.165 34.783 0.00 0.00 32.46 5.07
24 25 4.614555 TGTAATTAAGCCATCAAGCGTG 57.385 40.909 0.00 0.00 38.01 5.34
25 26 4.257731 TGTAATTAAGCCATCAAGCGTGA 58.742 39.130 4.40 4.40 38.41 4.35
26 27 3.764885 AATTAAGCCATCAAGCGTGAC 57.235 42.857 3.91 0.00 36.31 3.67
27 28 2.177394 TTAAGCCATCAAGCGTGACA 57.823 45.000 3.91 0.00 36.31 3.58
28 29 2.401583 TAAGCCATCAAGCGTGACAT 57.598 45.000 3.91 0.00 36.31 3.06
29 30 0.806868 AAGCCATCAAGCGTGACATG 59.193 50.000 3.91 0.00 36.31 3.21
30 31 0.321919 AGCCATCAAGCGTGACATGT 60.322 50.000 3.91 0.00 36.31 3.21
31 32 1.066215 AGCCATCAAGCGTGACATGTA 60.066 47.619 3.91 0.00 36.31 2.29
32 33 1.737236 GCCATCAAGCGTGACATGTAA 59.263 47.619 3.91 0.00 36.31 2.41
33 34 2.161410 GCCATCAAGCGTGACATGTAAA 59.839 45.455 3.91 0.00 36.31 2.01
34 35 3.365868 GCCATCAAGCGTGACATGTAAAA 60.366 43.478 3.91 0.00 36.31 1.52
35 36 4.675146 GCCATCAAGCGTGACATGTAAAAT 60.675 41.667 3.91 0.00 36.31 1.82
36 37 5.448496 GCCATCAAGCGTGACATGTAAAATA 60.448 40.000 3.91 0.00 36.31 1.40
37 38 6.550843 CCATCAAGCGTGACATGTAAAATAA 58.449 36.000 3.91 0.00 36.31 1.40
38 39 7.195646 CCATCAAGCGTGACATGTAAAATAAT 58.804 34.615 3.91 0.00 36.31 1.28
39 40 7.376866 CCATCAAGCGTGACATGTAAAATAATC 59.623 37.037 3.91 0.00 36.31 1.75
40 41 7.371126 TCAAGCGTGACATGTAAAATAATCA 57.629 32.000 0.00 0.00 0.00 2.57
41 42 7.984391 TCAAGCGTGACATGTAAAATAATCAT 58.016 30.769 0.00 0.00 0.00 2.45
42 43 9.103861 TCAAGCGTGACATGTAAAATAATCATA 57.896 29.630 0.00 0.00 0.00 2.15
43 44 9.882996 CAAGCGTGACATGTAAAATAATCATAT 57.117 29.630 0.00 0.00 0.00 1.78
45 46 9.882996 AGCGTGACATGTAAAATAATCATATTG 57.117 29.630 0.00 0.00 32.06 1.90
46 47 9.663904 GCGTGACATGTAAAATAATCATATTGT 57.336 29.630 0.00 0.00 32.06 2.71
71 72 9.730705 GTACCAATAGTTATATAACCCTTTCCC 57.269 37.037 19.74 1.89 36.88 3.97
72 73 7.762610 ACCAATAGTTATATAACCCTTTCCCC 58.237 38.462 19.74 0.00 36.88 4.81
73 74 7.578940 ACCAATAGTTATATAACCCTTTCCCCT 59.421 37.037 19.74 3.33 36.88 4.79
74 75 8.453681 CCAATAGTTATATAACCCTTTCCCCTT 58.546 37.037 19.74 2.68 36.88 3.95
75 76 9.877222 CAATAGTTATATAACCCTTTCCCCTTT 57.123 33.333 19.74 2.23 36.88 3.11
79 80 8.848830 AGTTATATAACCCTTTCCCCTTTTACA 58.151 33.333 19.74 0.00 36.88 2.41
80 81 9.128404 GTTATATAACCCTTTCCCCTTTTACAG 57.872 37.037 13.73 0.00 0.00 2.74
81 82 2.304221 ACCCTTTCCCCTTTTACAGC 57.696 50.000 0.00 0.00 0.00 4.40
82 83 1.787058 ACCCTTTCCCCTTTTACAGCT 59.213 47.619 0.00 0.00 0.00 4.24
83 84 2.179204 ACCCTTTCCCCTTTTACAGCTT 59.821 45.455 0.00 0.00 0.00 3.74
84 85 2.826128 CCCTTTCCCCTTTTACAGCTTC 59.174 50.000 0.00 0.00 0.00 3.86
85 86 3.496331 CCTTTCCCCTTTTACAGCTTCA 58.504 45.455 0.00 0.00 0.00 3.02
86 87 4.089361 CCTTTCCCCTTTTACAGCTTCAT 58.911 43.478 0.00 0.00 0.00 2.57
87 88 4.082026 CCTTTCCCCTTTTACAGCTTCATG 60.082 45.833 0.00 0.00 0.00 3.07
88 89 3.806949 TCCCCTTTTACAGCTTCATGT 57.193 42.857 0.00 0.00 37.19 3.21
89 90 4.919774 TCCCCTTTTACAGCTTCATGTA 57.080 40.909 0.00 0.00 34.56 2.29
90 91 5.450818 TCCCCTTTTACAGCTTCATGTAT 57.549 39.130 0.00 0.00 35.65 2.29
91 92 5.192927 TCCCCTTTTACAGCTTCATGTATG 58.807 41.667 0.00 0.00 35.65 2.39
92 93 5.045213 TCCCCTTTTACAGCTTCATGTATGA 60.045 40.000 0.00 0.00 35.65 2.15
93 94 5.652014 CCCCTTTTACAGCTTCATGTATGAA 59.348 40.000 7.06 7.06 43.94 2.57
94 95 6.322201 CCCCTTTTACAGCTTCATGTATGAAT 59.678 38.462 7.67 0.00 44.92 2.57
95 96 7.502226 CCCCTTTTACAGCTTCATGTATGAATA 59.498 37.037 7.67 0.00 44.92 1.75
96 97 8.902806 CCCTTTTACAGCTTCATGTATGAATAA 58.097 33.333 7.67 2.06 44.92 1.40
101 102 7.194607 ACAGCTTCATGTATGAATAATTCCG 57.805 36.000 7.67 0.00 44.92 4.30
102 103 6.767902 ACAGCTTCATGTATGAATAATTCCGT 59.232 34.615 7.67 0.00 44.92 4.69
103 104 7.283127 ACAGCTTCATGTATGAATAATTCCGTT 59.717 33.333 7.67 0.00 44.92 4.44
104 105 7.800380 CAGCTTCATGTATGAATAATTCCGTTC 59.200 37.037 7.67 0.00 44.92 3.95
105 106 7.716998 AGCTTCATGTATGAATAATTCCGTTCT 59.283 33.333 7.67 0.00 44.92 3.01
106 107 8.988934 GCTTCATGTATGAATAATTCCGTTCTA 58.011 33.333 7.67 0.00 44.92 2.10
112 113 9.607988 TGTATGAATAATTCCGTTCTAATGTGT 57.392 29.630 0.00 0.00 0.00 3.72
116 117 9.878667 TGAATAATTCCGTTCTAATGTGTAGAA 57.121 29.630 0.00 0.00 0.00 2.10
120 121 8.561738 AATTCCGTTCTAATGTGTAGAATTGT 57.438 30.769 0.00 0.00 36.16 2.71
121 122 6.961359 TCCGTTCTAATGTGTAGAATTGTG 57.039 37.500 0.00 0.00 36.16 3.33
122 123 5.872617 TCCGTTCTAATGTGTAGAATTGTGG 59.127 40.000 0.00 1.43 36.16 4.17
123 124 5.642063 CCGTTCTAATGTGTAGAATTGTGGT 59.358 40.000 0.00 0.00 36.16 4.16
124 125 6.148811 CCGTTCTAATGTGTAGAATTGTGGTT 59.851 38.462 0.00 0.00 36.16 3.67
125 126 7.308348 CCGTTCTAATGTGTAGAATTGTGGTTT 60.308 37.037 0.00 0.00 36.16 3.27
126 127 7.744715 CGTTCTAATGTGTAGAATTGTGGTTTC 59.255 37.037 0.00 0.00 36.16 2.78
127 128 7.681939 TCTAATGTGTAGAATTGTGGTTTCC 57.318 36.000 0.00 0.00 0.00 3.13
128 129 7.458397 TCTAATGTGTAGAATTGTGGTTTCCT 58.542 34.615 0.00 0.00 0.00 3.36
129 130 8.598916 TCTAATGTGTAGAATTGTGGTTTCCTA 58.401 33.333 0.00 0.00 0.00 2.94
130 131 9.226606 CTAATGTGTAGAATTGTGGTTTCCTAA 57.773 33.333 0.00 0.00 0.00 2.69
131 132 7.687941 ATGTGTAGAATTGTGGTTTCCTAAG 57.312 36.000 0.00 0.00 0.00 2.18
132 133 5.472137 TGTGTAGAATTGTGGTTTCCTAAGC 59.528 40.000 0.00 0.00 0.00 3.09
133 134 5.472137 GTGTAGAATTGTGGTTTCCTAAGCA 59.528 40.000 0.00 0.00 39.31 3.91
134 135 5.705441 TGTAGAATTGTGGTTTCCTAAGCAG 59.295 40.000 0.00 0.00 42.00 4.24
135 136 4.729868 AGAATTGTGGTTTCCTAAGCAGT 58.270 39.130 0.00 0.00 42.00 4.40
136 137 4.520492 AGAATTGTGGTTTCCTAAGCAGTG 59.480 41.667 0.00 0.00 42.00 3.66
137 138 3.290948 TTGTGGTTTCCTAAGCAGTGT 57.709 42.857 0.00 0.00 42.00 3.55
138 139 3.290948 TGTGGTTTCCTAAGCAGTGTT 57.709 42.857 0.00 0.00 42.00 3.32
139 140 3.626930 TGTGGTTTCCTAAGCAGTGTTT 58.373 40.909 0.00 0.00 42.00 2.83
140 141 4.020543 TGTGGTTTCCTAAGCAGTGTTTT 58.979 39.130 0.00 0.00 42.00 2.43
141 142 4.142271 TGTGGTTTCCTAAGCAGTGTTTTG 60.142 41.667 0.00 0.00 42.00 2.44
142 143 4.020543 TGGTTTCCTAAGCAGTGTTTTGT 58.979 39.130 0.00 0.00 36.88 2.83
143 144 4.142271 TGGTTTCCTAAGCAGTGTTTTGTG 60.142 41.667 0.00 0.00 36.88 3.33
144 145 4.142249 GGTTTCCTAAGCAGTGTTTTGTGT 60.142 41.667 0.00 0.00 0.00 3.72
145 146 4.630894 TTCCTAAGCAGTGTTTTGTGTG 57.369 40.909 0.00 0.00 0.00 3.82
146 147 2.357637 TCCTAAGCAGTGTTTTGTGTGC 59.642 45.455 0.00 0.00 36.10 4.57
147 148 2.098934 CCTAAGCAGTGTTTTGTGTGCA 59.901 45.455 0.00 0.00 38.44 4.57
148 149 2.282701 AAGCAGTGTTTTGTGTGCAG 57.717 45.000 0.00 0.00 38.44 4.41
149 150 1.176527 AGCAGTGTTTTGTGTGCAGT 58.823 45.000 0.00 0.00 38.44 4.40
150 151 1.545582 AGCAGTGTTTTGTGTGCAGTT 59.454 42.857 0.00 0.00 38.44 3.16
151 152 2.029110 AGCAGTGTTTTGTGTGCAGTTT 60.029 40.909 0.00 0.00 38.44 2.66
152 153 2.092524 GCAGTGTTTTGTGTGCAGTTTG 59.907 45.455 0.00 0.00 35.91 2.93
153 154 2.092524 CAGTGTTTTGTGTGCAGTTTGC 59.907 45.455 0.00 0.00 45.29 3.68
154 155 2.029110 AGTGTTTTGTGTGCAGTTTGCT 60.029 40.909 2.48 0.00 45.31 3.91
155 156 3.192422 AGTGTTTTGTGTGCAGTTTGCTA 59.808 39.130 2.48 0.00 45.31 3.49
156 157 3.923461 GTGTTTTGTGTGCAGTTTGCTAA 59.077 39.130 2.48 0.00 45.31 3.09
157 158 4.387256 GTGTTTTGTGTGCAGTTTGCTAAA 59.613 37.500 2.48 0.00 45.31 1.85
158 159 4.624882 TGTTTTGTGTGCAGTTTGCTAAAG 59.375 37.500 2.48 0.00 45.31 1.85
159 160 3.435105 TTGTGTGCAGTTTGCTAAAGG 57.565 42.857 2.48 0.00 45.31 3.11
160 161 1.680735 TGTGTGCAGTTTGCTAAAGGG 59.319 47.619 2.48 0.00 45.31 3.95
161 162 1.681264 GTGTGCAGTTTGCTAAAGGGT 59.319 47.619 2.48 0.00 45.31 4.34
162 163 1.953686 TGTGCAGTTTGCTAAAGGGTC 59.046 47.619 2.48 0.00 45.31 4.46
163 164 2.230660 GTGCAGTTTGCTAAAGGGTCT 58.769 47.619 2.48 0.00 45.31 3.85
164 165 2.030805 GTGCAGTTTGCTAAAGGGTCTG 60.031 50.000 2.48 0.00 45.31 3.51
165 166 2.230660 GCAGTTTGCTAAAGGGTCTGT 58.769 47.619 0.00 0.00 40.96 3.41
166 167 2.226674 GCAGTTTGCTAAAGGGTCTGTC 59.773 50.000 0.00 0.00 40.96 3.51
167 168 3.744660 CAGTTTGCTAAAGGGTCTGTCT 58.255 45.455 0.00 0.00 0.00 3.41
168 169 4.802918 GCAGTTTGCTAAAGGGTCTGTCTA 60.803 45.833 0.00 0.00 40.96 2.59
169 170 4.932200 CAGTTTGCTAAAGGGTCTGTCTAG 59.068 45.833 0.00 0.00 0.00 2.43
170 171 4.838986 AGTTTGCTAAAGGGTCTGTCTAGA 59.161 41.667 0.00 0.00 0.00 2.43
171 172 5.307196 AGTTTGCTAAAGGGTCTGTCTAGAA 59.693 40.000 0.00 0.00 34.01 2.10
172 173 4.803098 TGCTAAAGGGTCTGTCTAGAAC 57.197 45.455 0.00 0.00 40.04 3.01
173 174 4.157246 TGCTAAAGGGTCTGTCTAGAACA 58.843 43.478 0.00 0.00 42.67 3.18
174 175 4.021368 TGCTAAAGGGTCTGTCTAGAACAC 60.021 45.833 0.00 0.00 42.67 3.32
175 176 4.021368 GCTAAAGGGTCTGTCTAGAACACA 60.021 45.833 0.00 0.00 42.67 3.72
176 177 5.337652 GCTAAAGGGTCTGTCTAGAACACAT 60.338 44.000 0.00 0.00 42.67 3.21
177 178 4.810191 AAGGGTCTGTCTAGAACACATC 57.190 45.455 0.00 0.00 42.67 3.06
178 179 4.054359 AGGGTCTGTCTAGAACACATCT 57.946 45.455 0.00 0.00 42.67 2.90
179 180 5.194473 AGGGTCTGTCTAGAACACATCTA 57.806 43.478 0.00 0.00 42.67 1.98
211 212 8.011844 ACATAGTTATGTCACATCTAAGCTGA 57.988 34.615 0.00 0.00 42.96 4.26
212 213 8.646004 ACATAGTTATGTCACATCTAAGCTGAT 58.354 33.333 0.00 0.00 42.96 2.90
213 214 8.923683 CATAGTTATGTCACATCTAAGCTGATG 58.076 37.037 11.48 11.48 46.61 3.07
221 222 4.669206 CATCTAAGCTGATGTCCACTCT 57.331 45.455 5.99 0.00 39.05 3.24
222 223 4.370049 CATCTAAGCTGATGTCCACTCTG 58.630 47.826 5.99 0.00 39.05 3.35
223 224 3.435275 TCTAAGCTGATGTCCACTCTGT 58.565 45.455 0.00 0.00 0.00 3.41
224 225 3.834813 TCTAAGCTGATGTCCACTCTGTT 59.165 43.478 0.00 0.00 0.00 3.16
225 226 3.498774 AAGCTGATGTCCACTCTGTTT 57.501 42.857 0.00 0.00 0.00 2.83
226 227 2.775890 AGCTGATGTCCACTCTGTTTG 58.224 47.619 0.00 0.00 0.00 2.93
227 228 2.105477 AGCTGATGTCCACTCTGTTTGT 59.895 45.455 0.00 0.00 0.00 2.83
228 229 2.225019 GCTGATGTCCACTCTGTTTGTG 59.775 50.000 0.00 0.00 35.39 3.33
279 280 9.709495 ATTTCTTGTTGTTGCATTATACATTGT 57.291 25.926 0.00 0.00 0.00 2.71
280 281 8.518151 TTCTTGTTGTTGCATTATACATTGTG 57.482 30.769 0.00 0.00 0.00 3.33
281 282 7.089538 TCTTGTTGTTGCATTATACATTGTGG 58.910 34.615 0.00 0.00 0.00 4.17
282 283 5.718146 TGTTGTTGCATTATACATTGTGGG 58.282 37.500 0.00 0.00 0.00 4.61
283 284 5.478332 TGTTGTTGCATTATACATTGTGGGA 59.522 36.000 0.00 0.00 0.00 4.37
284 285 5.833406 TGTTGCATTATACATTGTGGGAG 57.167 39.130 0.00 0.00 0.00 4.30
285 286 4.097741 TGTTGCATTATACATTGTGGGAGC 59.902 41.667 0.00 0.00 0.00 4.70
286 287 4.169059 TGCATTATACATTGTGGGAGCT 57.831 40.909 0.00 0.00 0.00 4.09
287 288 4.535781 TGCATTATACATTGTGGGAGCTT 58.464 39.130 0.00 0.00 0.00 3.74
288 289 5.689835 TGCATTATACATTGTGGGAGCTTA 58.310 37.500 0.00 0.00 0.00 3.09
289 290 5.764686 TGCATTATACATTGTGGGAGCTTAG 59.235 40.000 0.00 0.00 0.00 2.18
290 291 5.997746 GCATTATACATTGTGGGAGCTTAGA 59.002 40.000 0.00 0.00 0.00 2.10
291 292 6.656693 GCATTATACATTGTGGGAGCTTAGAT 59.343 38.462 0.00 0.00 0.00 1.98
292 293 7.361542 GCATTATACATTGTGGGAGCTTAGATG 60.362 40.741 0.00 0.00 0.00 2.90
293 294 5.636903 ATACATTGTGGGAGCTTAGATGT 57.363 39.130 0.00 0.00 0.00 3.06
294 295 3.614092 ACATTGTGGGAGCTTAGATGTG 58.386 45.455 0.00 0.00 0.00 3.21
295 296 3.264193 ACATTGTGGGAGCTTAGATGTGA 59.736 43.478 0.00 0.00 0.00 3.58
296 297 3.334583 TTGTGGGAGCTTAGATGTGAC 57.665 47.619 0.00 0.00 0.00 3.67
297 298 2.256306 TGTGGGAGCTTAGATGTGACA 58.744 47.619 0.00 0.00 0.00 3.58
298 299 2.840038 TGTGGGAGCTTAGATGTGACAT 59.160 45.455 0.00 0.00 0.00 3.06
299 300 3.118629 TGTGGGAGCTTAGATGTGACATC 60.119 47.826 17.46 17.46 0.00 3.06
300 301 2.435805 TGGGAGCTTAGATGTGACATCC 59.564 50.000 21.05 6.28 0.00 3.51
301 302 2.703007 GGGAGCTTAGATGTGACATCCT 59.297 50.000 21.05 11.37 0.00 3.24
302 303 3.135530 GGGAGCTTAGATGTGACATCCTT 59.864 47.826 21.05 7.22 0.00 3.36
303 304 4.345257 GGGAGCTTAGATGTGACATCCTTA 59.655 45.833 21.05 6.22 0.00 2.69
304 305 5.163301 GGGAGCTTAGATGTGACATCCTTAA 60.163 44.000 21.05 13.11 0.00 1.85
305 306 6.349300 GGAGCTTAGATGTGACATCCTTAAA 58.651 40.000 21.05 10.18 0.00 1.52
306 307 6.995091 GGAGCTTAGATGTGACATCCTTAAAT 59.005 38.462 21.05 5.07 0.00 1.40
307 308 8.150945 GGAGCTTAGATGTGACATCCTTAAATA 58.849 37.037 21.05 4.10 0.00 1.40
308 309 9.547753 GAGCTTAGATGTGACATCCTTAAATAA 57.452 33.333 21.05 11.20 0.00 1.40
309 310 9.331282 AGCTTAGATGTGACATCCTTAAATAAC 57.669 33.333 21.05 7.76 0.00 1.89
310 311 9.109393 GCTTAGATGTGACATCCTTAAATAACA 57.891 33.333 21.05 0.00 0.00 2.41
335 336 9.376075 CATCTAGATGTGAATTAGACAAACTGT 57.624 33.333 22.42 0.00 34.23 3.55
336 337 9.950496 ATCTAGATGTGAATTAGACAAACTGTT 57.050 29.630 3.89 0.00 0.00 3.16
337 338 9.778741 TCTAGATGTGAATTAGACAAACTGTTT 57.221 29.630 0.00 0.00 0.00 2.83
338 339 9.817365 CTAGATGTGAATTAGACAAACTGTTTG 57.183 33.333 26.86 26.86 45.95 2.93
339 340 7.141363 AGATGTGAATTAGACAAACTGTTTGC 58.859 34.615 28.02 21.03 44.39 3.68
340 341 6.449635 TGTGAATTAGACAAACTGTTTGCT 57.550 33.333 28.02 25.38 44.39 3.91
341 342 6.862209 TGTGAATTAGACAAACTGTTTGCTT 58.138 32.000 28.02 19.76 44.39 3.91
342 343 7.990917 TGTGAATTAGACAAACTGTTTGCTTA 58.009 30.769 28.02 20.10 44.39 3.09
343 344 8.462811 TGTGAATTAGACAAACTGTTTGCTTAA 58.537 29.630 28.02 24.34 44.39 1.85
344 345 9.463443 GTGAATTAGACAAACTGTTTGCTTAAT 57.537 29.630 28.02 25.16 44.39 1.40
345 346 9.462174 TGAATTAGACAAACTGTTTGCTTAATG 57.538 29.630 28.02 8.61 44.39 1.90
346 347 8.816640 AATTAGACAAACTGTTTGCTTAATGG 57.183 30.769 28.02 7.20 44.39 3.16
347 348 5.852282 AGACAAACTGTTTGCTTAATGGT 57.148 34.783 28.02 10.20 44.39 3.55
348 349 6.220726 AGACAAACTGTTTGCTTAATGGTT 57.779 33.333 28.02 9.55 44.39 3.67
349 350 6.042143 AGACAAACTGTTTGCTTAATGGTTG 58.958 36.000 28.02 6.11 44.39 3.77
350 351 5.729510 ACAAACTGTTTGCTTAATGGTTGT 58.270 33.333 28.02 6.71 44.39 3.32
351 352 6.169800 ACAAACTGTTTGCTTAATGGTTGTT 58.830 32.000 28.02 5.89 44.39 2.83
352 353 6.652900 ACAAACTGTTTGCTTAATGGTTGTTT 59.347 30.769 28.02 5.50 44.39 2.83
353 354 6.660887 AACTGTTTGCTTAATGGTTGTTTG 57.339 33.333 0.00 0.00 0.00 2.93
354 355 5.729510 ACTGTTTGCTTAATGGTTGTTTGT 58.270 33.333 0.00 0.00 0.00 2.83
355 356 5.580297 ACTGTTTGCTTAATGGTTGTTTGTG 59.420 36.000 0.00 0.00 0.00 3.33
356 357 5.724328 TGTTTGCTTAATGGTTGTTTGTGA 58.276 33.333 0.00 0.00 0.00 3.58
357 358 5.809562 TGTTTGCTTAATGGTTGTTTGTGAG 59.190 36.000 0.00 0.00 0.00 3.51
358 359 5.590530 TTGCTTAATGGTTGTTTGTGAGT 57.409 34.783 0.00 0.00 0.00 3.41
359 360 5.590530 TGCTTAATGGTTGTTTGTGAGTT 57.409 34.783 0.00 0.00 0.00 3.01
360 361 5.971763 TGCTTAATGGTTGTTTGTGAGTTT 58.028 33.333 0.00 0.00 0.00 2.66
361 362 6.039616 TGCTTAATGGTTGTTTGTGAGTTTC 58.960 36.000 0.00 0.00 0.00 2.78
362 363 6.127479 TGCTTAATGGTTGTTTGTGAGTTTCT 60.127 34.615 0.00 0.00 0.00 2.52
363 364 7.067615 TGCTTAATGGTTGTTTGTGAGTTTCTA 59.932 33.333 0.00 0.00 0.00 2.10
364 365 8.082242 GCTTAATGGTTGTTTGTGAGTTTCTAT 58.918 33.333 0.00 0.00 0.00 1.98
369 370 8.106247 TGGTTGTTTGTGAGTTTCTATATTCC 57.894 34.615 0.00 0.00 0.00 3.01
370 371 7.942341 TGGTTGTTTGTGAGTTTCTATATTCCT 59.058 33.333 0.00 0.00 0.00 3.36
371 372 9.444600 GGTTGTTTGTGAGTTTCTATATTCCTA 57.555 33.333 0.00 0.00 0.00 2.94
416 417 6.687081 TTTTAAATCAGTCGGTGACTTTGT 57.313 33.333 0.00 0.00 41.37 2.83
417 418 6.687081 TTTAAATCAGTCGGTGACTTTGTT 57.313 33.333 0.00 0.00 41.37 2.83
418 419 6.687081 TTAAATCAGTCGGTGACTTTGTTT 57.313 33.333 0.00 2.40 41.37 2.83
419 420 5.576447 AAATCAGTCGGTGACTTTGTTTT 57.424 34.783 0.00 0.00 41.37 2.43
420 421 5.576447 AATCAGTCGGTGACTTTGTTTTT 57.424 34.783 0.00 0.00 41.37 1.94
444 445 1.988015 GGGGGAATTCAGTCGGTGA 59.012 57.895 7.93 0.00 0.00 4.02
482 485 9.220767 GGATGAAAAGGTTATATGGATACTCAC 57.779 37.037 0.00 0.00 37.61 3.51
488 491 9.614792 AAAGGTTATATGGATACTCACAAGTTC 57.385 33.333 0.00 0.00 36.92 3.01
490 493 8.424918 AGGTTATATGGATACTCACAAGTTCAG 58.575 37.037 0.00 0.00 36.92 3.02
506 509 7.537306 CACAAGTTCAGTAATAAAAACCCATCG 59.463 37.037 0.00 0.00 0.00 3.84
538 541 2.408050 CGCGCATTTCCTTCTAGCTAT 58.592 47.619 8.75 0.00 0.00 2.97
570 573 6.086871 TCTATCTATGAGAATTTGCGCGTAG 58.913 40.000 8.43 0.00 0.00 3.51
572 575 3.796717 TCTATGAGAATTTGCGCGTAGTG 59.203 43.478 8.43 0.00 43.41 2.74
637 640 8.708742 GCCCTTTGAACATTTTGATTAGTTAAC 58.291 33.333 0.00 0.00 0.00 2.01
646 1354 5.600908 TTTGATTAGTTAACACGGTGAGC 57.399 39.130 16.29 1.84 0.00 4.26
682 1390 0.385390 AAAAAGCCAGAGCCGTGTTG 59.615 50.000 0.00 0.00 41.25 3.33
690 1398 0.180406 AGAGCCGTGTTGTCCAAGTT 59.820 50.000 0.00 0.00 0.00 2.66
722 1430 8.090214 AGAAGAACAGAATCAGAAGAGAAAGAG 58.910 37.037 0.00 0.00 0.00 2.85
736 1444 4.413851 AGAGAAAGAGGGGAACAAACTTCT 59.586 41.667 0.00 0.00 0.00 2.85
737 1445 4.720046 AGAAAGAGGGGAACAAACTTCTC 58.280 43.478 0.00 0.00 0.00 2.87
744 1452 3.821600 GGGGAACAAACTTCTCTCTTTCC 59.178 47.826 0.00 0.00 0.00 3.13
800 1508 1.542492 CAAAGCACAAGCATCTCCCT 58.458 50.000 0.00 0.00 45.49 4.20
943 1661 2.446253 CGCCGCGACGTTTATTGGA 61.446 57.895 8.23 0.00 0.00 3.53
987 1705 1.426621 CAGATGATGCACACACGCC 59.573 57.895 0.00 0.00 0.00 5.68
998 1716 2.675423 ACACGCCACGAGCTAGGA 60.675 61.111 0.00 0.00 40.39 2.94
1177 1919 0.396435 TGAGCACGGATGAGTTGGTT 59.604 50.000 0.00 0.00 0.00 3.67
1187 1932 3.120304 GGATGAGTTGGTTACGTTCTTGC 60.120 47.826 0.00 0.00 0.00 4.01
1188 1933 1.862201 TGAGTTGGTTACGTTCTTGCG 59.138 47.619 0.00 0.00 37.94 4.85
1190 1935 1.595794 AGTTGGTTACGTTCTTGCGTG 59.404 47.619 0.00 0.00 45.33 5.34
1191 1936 1.328374 GTTGGTTACGTTCTTGCGTGT 59.672 47.619 0.00 0.00 45.33 4.49
1192 1937 1.654317 TGGTTACGTTCTTGCGTGTT 58.346 45.000 0.00 0.00 45.33 3.32
1193 1938 1.593933 TGGTTACGTTCTTGCGTGTTC 59.406 47.619 0.00 0.00 45.33 3.18
1194 1939 1.396316 GGTTACGTTCTTGCGTGTTCG 60.396 52.381 0.00 0.00 45.33 3.95
1195 1940 1.256117 GTTACGTTCTTGCGTGTTCGT 59.744 47.619 0.00 0.00 45.33 3.85
1196 1941 0.847670 TACGTTCTTGCGTGTTCGTG 59.152 50.000 0.00 0.00 45.33 4.35
1197 1942 1.717728 CGTTCTTGCGTGTTCGTGC 60.718 57.895 0.00 0.00 39.49 5.34
1367 2112 3.647771 GGGCGGTGGAGGGTTTCT 61.648 66.667 0.00 0.00 0.00 2.52
1389 2134 3.902086 TGTGTTCGACGTGCCGGA 61.902 61.111 5.05 0.00 0.00 5.14
1708 2456 1.065928 GATACAGGAGGACGTGCCG 59.934 63.158 2.38 0.00 43.43 5.69
1798 2546 1.454295 GGTCGAGGAGGAGGAGGAC 60.454 68.421 0.00 0.00 0.00 3.85
1810 2558 2.818132 GAGGACCCTCCGATGCAG 59.182 66.667 4.72 0.00 42.75 4.41
1851 2599 1.855213 TTCGACGTCCCGGTGTACAG 61.855 60.000 10.58 0.00 0.00 2.74
2021 2769 2.531685 AGCCCAAGCCACCACCTA 60.532 61.111 0.00 0.00 41.25 3.08
2024 2772 1.998530 CCCAAGCCACCACCTATCA 59.001 57.895 0.00 0.00 0.00 2.15
2083 2831 4.021925 GTTGAGGAGCCACCGCCT 62.022 66.667 0.00 0.00 44.61 5.52
2084 2832 4.020617 TTGAGGAGCCACCGCCTG 62.021 66.667 0.00 0.00 41.74 4.85
2098 2879 3.522731 CCTGTCGAGGAGCCTCCG 61.523 72.222 4.80 6.51 42.93 4.63
2182 2978 4.083862 GAGGAGCCACCACCCGTC 62.084 72.222 0.47 0.00 42.04 4.79
2185 2981 4.436998 GAGCCACCACCCGTCGAG 62.437 72.222 0.00 0.00 0.00 4.04
2188 2984 3.075005 CCACCACCCGTCGAGGAT 61.075 66.667 6.70 0.00 45.00 3.24
2189 2985 2.494918 CACCACCCGTCGAGGATC 59.505 66.667 6.70 0.00 45.00 3.36
2190 2986 2.758737 ACCACCCGTCGAGGATCC 60.759 66.667 2.48 2.48 45.00 3.36
2191 2987 2.442272 CCACCCGTCGAGGATCCT 60.442 66.667 16.13 16.13 45.00 3.24
2192 2988 2.491022 CCACCCGTCGAGGATCCTC 61.491 68.421 29.15 29.15 45.00 3.71
2193 2989 2.123812 ACCCGTCGAGGATCCTCC 60.124 66.667 31.77 19.64 45.00 4.30
2194 2990 3.288290 CCCGTCGAGGATCCTCCG 61.288 72.222 31.77 28.18 42.75 4.63
2195 2991 3.288290 CCGTCGAGGATCCTCCGG 61.288 72.222 32.12 32.12 42.75 5.14
2196 2992 2.516460 CGTCGAGGATCCTCCGGT 60.516 66.667 31.77 2.79 42.75 5.28
2197 2993 2.835705 CGTCGAGGATCCTCCGGTG 61.836 68.421 31.77 19.68 42.75 4.94
2198 2994 2.833582 TCGAGGATCCTCCGGTGC 60.834 66.667 31.77 10.71 42.75 5.01
2199 2995 3.917760 CGAGGATCCTCCGGTGCC 61.918 72.222 31.77 10.00 42.75 5.01
2200 2996 3.917760 GAGGATCCTCCGGTGCCG 61.918 72.222 28.84 3.25 42.75 5.69
2229 3025 2.359975 CTTGGAACCGCCTCCCAC 60.360 66.667 0.00 0.00 37.63 4.61
2275 3071 2.829384 GGTTGAGGAGCCACCACCA 61.829 63.158 2.95 0.00 42.04 4.17
2276 3072 1.302832 GTTGAGGAGCCACCACCAG 60.303 63.158 0.47 0.00 42.04 4.00
2278 3074 1.768684 TTGAGGAGCCACCACCAGTC 61.769 60.000 0.47 0.00 42.04 3.51
2281 3077 2.262915 GAGCCACCACCAGTCGAG 59.737 66.667 0.00 0.00 0.00 4.04
2282 3078 3.302347 GAGCCACCACCAGTCGAGG 62.302 68.421 0.00 0.00 0.00 4.63
2283 3079 3.311110 GCCACCACCAGTCGAGGA 61.311 66.667 0.00 0.00 0.00 3.71
2284 3080 2.660064 GCCACCACCAGTCGAGGAT 61.660 63.158 0.00 0.00 0.00 3.24
2286 3082 1.517832 CACCACCAGTCGAGGATCC 59.482 63.158 2.48 2.48 0.00 3.36
2287 3083 0.972983 CACCACCAGTCGAGGATCCT 60.973 60.000 16.13 16.13 0.00 3.24
2290 3086 1.454111 ACCAGTCGAGGATCCTCCG 60.454 63.158 31.77 25.74 42.75 4.63
2291 3087 2.196925 CCAGTCGAGGATCCTCCGG 61.197 68.421 31.77 23.08 42.75 5.14
2292 3088 2.519780 AGTCGAGGATCCTCCGGC 60.520 66.667 31.77 26.71 42.75 6.13
2293 3089 2.833582 GTCGAGGATCCTCCGGCA 60.834 66.667 31.77 13.60 42.75 5.69
2294 3090 2.833582 TCGAGGATCCTCCGGCAC 60.834 66.667 31.77 10.71 42.75 5.01
2295 3091 3.917760 CGAGGATCCTCCGGCACC 61.918 72.222 31.77 10.00 42.75 5.01
2314 3110 4.629523 GTTGACCCGCCCGTGGAA 62.630 66.667 0.00 0.00 0.00 3.53
2326 3122 2.438434 GTGGAACCGCCTCCCATG 60.438 66.667 0.00 0.00 37.63 3.66
2771 3567 2.833582 TGCCGAGGATCCTCCGAC 60.834 66.667 31.77 22.15 42.75 4.79
2939 3735 2.526873 ACCACCGGTTGAGGAGCT 60.527 61.111 15.99 0.00 27.29 4.09
3015 3826 2.960170 GCACCAGCAGAGGCAAAG 59.040 61.111 0.00 0.00 44.61 2.77
3034 3845 3.595691 CCATCTGATGGTAGCGACC 57.404 57.895 25.34 9.38 45.54 4.79
3235 4046 3.966543 AACAGGGCGGGGGTTGAG 61.967 66.667 0.00 0.00 0.00 3.02
3236 4047 4.974438 ACAGGGCGGGGGTTGAGA 62.974 66.667 0.00 0.00 0.00 3.27
3241 4052 2.052104 GGCGGGGGTTGAGAATTGG 61.052 63.158 0.00 0.00 0.00 3.16
3247 4058 0.603065 GGGTTGAGAATTGGTGTGGC 59.397 55.000 0.00 0.00 0.00 5.01
3272 4083 0.872451 TCGTGCCACTGTGTAACACG 60.872 55.000 27.67 27.67 45.67 4.49
3273 4084 1.278637 GTGCCACTGTGTAACACGC 59.721 57.895 7.08 2.41 45.67 5.34
3284 4095 4.297510 TGTGTAACACGCGTTGTATACTT 58.702 39.130 10.22 0.00 45.67 2.24
3285 4096 4.148522 TGTGTAACACGCGTTGTATACTTG 59.851 41.667 10.22 0.00 45.67 3.16
3286 4097 4.148696 GTGTAACACGCGTTGTATACTTGT 59.851 41.667 10.22 0.00 37.51 3.16
3287 4098 5.341993 GTGTAACACGCGTTGTATACTTGTA 59.658 40.000 10.22 0.00 37.51 2.41
3297 4108 9.338291 CGCGTTGTATACTTGTATGTATAGAAT 57.662 33.333 4.17 0.00 39.30 2.40
3325 4137 9.198065 GATTTTGTTTTGATTTTTCTTGTCACG 57.802 29.630 0.00 0.00 0.00 4.35
3380 4192 5.952347 GGAAATTTGGGAGAGGATTTGTAGT 59.048 40.000 0.00 0.00 0.00 2.73
3381 4193 7.036863 AGGAAATTTGGGAGAGGATTTGTAGTA 60.037 37.037 0.00 0.00 0.00 1.82
3388 4200 2.021936 AGAGGATTTGTAGTAGGGGGCT 60.022 50.000 0.00 0.00 0.00 5.19
3391 4203 2.778270 GGATTTGTAGTAGGGGGCTTCT 59.222 50.000 0.00 0.00 0.00 2.85
3393 4205 4.040584 GGATTTGTAGTAGGGGGCTTCTAG 59.959 50.000 0.00 0.00 0.00 2.43
3399 4211 2.838813 AGTAGGGGGCTTCTAGTTGAAC 59.161 50.000 0.00 0.00 0.00 3.18
3400 4212 0.613777 AGGGGGCTTCTAGTTGAACG 59.386 55.000 0.00 0.00 0.00 3.95
3403 4223 0.392595 GGGCTTCTAGTTGAACGGGG 60.393 60.000 0.00 0.00 0.00 5.73
3406 4226 0.739813 CTTCTAGTTGAACGGGGGCG 60.740 60.000 0.00 0.00 0.00 6.13
3437 4257 1.140312 TAGGCATGAGGGGGATGAAC 58.860 55.000 0.00 0.00 0.00 3.18
3450 4270 6.686544 AGGGGGATGAACAAGAATATTGATT 58.313 36.000 0.00 0.00 0.00 2.57
3455 4275 6.415867 GGATGAACAAGAATATTGATTGCACG 59.584 38.462 9.04 0.00 0.00 5.34
3456 4276 5.639757 TGAACAAGAATATTGATTGCACGG 58.360 37.500 9.04 0.00 0.00 4.94
3459 4279 6.455360 ACAAGAATATTGATTGCACGGAAT 57.545 33.333 9.04 0.00 0.00 3.01
3461 4281 7.417612 ACAAGAATATTGATTGCACGGAATAC 58.582 34.615 9.04 0.00 0.00 1.89
3465 4285 7.915397 AGAATATTGATTGCACGGAATACAAAC 59.085 33.333 0.00 0.00 0.00 2.93
3466 4286 4.837896 TTGATTGCACGGAATACAAACA 57.162 36.364 0.00 0.00 0.00 2.83
3467 4287 5.384063 TTGATTGCACGGAATACAAACAT 57.616 34.783 0.00 0.00 0.00 2.71
3468 4288 4.980590 TGATTGCACGGAATACAAACATC 58.019 39.130 0.00 0.00 0.00 3.06
3469 4289 4.457257 TGATTGCACGGAATACAAACATCA 59.543 37.500 0.00 0.00 0.00 3.07
3470 4290 3.822594 TGCACGGAATACAAACATCAC 57.177 42.857 0.00 0.00 0.00 3.06
3471 4291 3.142174 TGCACGGAATACAAACATCACA 58.858 40.909 0.00 0.00 0.00 3.58
3472 4292 3.755905 TGCACGGAATACAAACATCACAT 59.244 39.130 0.00 0.00 0.00 3.21
3473 4293 4.938226 TGCACGGAATACAAACATCACATA 59.062 37.500 0.00 0.00 0.00 2.29
3474 4294 5.588246 TGCACGGAATACAAACATCACATAT 59.412 36.000 0.00 0.00 0.00 1.78
3475 4295 6.763610 TGCACGGAATACAAACATCACATATA 59.236 34.615 0.00 0.00 0.00 0.86
3476 4296 7.069569 GCACGGAATACAAACATCACATATAC 58.930 38.462 0.00 0.00 0.00 1.47
3477 4297 7.254624 GCACGGAATACAAACATCACATATACA 60.255 37.037 0.00 0.00 0.00 2.29
3478 4298 8.773645 CACGGAATACAAACATCACATATACAT 58.226 33.333 0.00 0.00 0.00 2.29
3479 4299 8.773645 ACGGAATACAAACATCACATATACATG 58.226 33.333 0.00 0.00 38.21 3.21
3480 4300 8.773645 CGGAATACAAACATCACATATACATGT 58.226 33.333 2.69 2.69 46.58 3.21
3483 4303 6.942532 ACAAACATCACATATACATGTCCC 57.057 37.500 0.00 0.00 43.73 4.46
3484 4304 6.422333 ACAAACATCACATATACATGTCCCA 58.578 36.000 0.00 0.00 43.73 4.37
3485 4305 7.062322 ACAAACATCACATATACATGTCCCAT 58.938 34.615 0.00 0.00 43.73 4.00
3486 4306 7.560991 ACAAACATCACATATACATGTCCCATT 59.439 33.333 0.00 0.00 43.73 3.16
3487 4307 8.415553 CAAACATCACATATACATGTCCCATTT 58.584 33.333 0.00 0.00 43.73 2.32
3488 4308 9.639563 AAACATCACATATACATGTCCCATTTA 57.360 29.630 0.00 0.00 43.73 1.40
3489 4309 9.812347 AACATCACATATACATGTCCCATTTAT 57.188 29.630 0.00 0.00 43.73 1.40
3490 4310 9.812347 ACATCACATATACATGTCCCATTTATT 57.188 29.630 0.00 0.00 43.73 1.40
3492 4312 9.812347 ATCACATATACATGTCCCATTTATTGT 57.188 29.630 0.00 0.00 43.73 2.71
3493 4313 9.639563 TCACATATACATGTCCCATTTATTGTT 57.360 29.630 0.00 0.00 43.73 2.83
3503 4323 9.816354 ATGTCCCATTTATTGTTTATAGTTTGC 57.184 29.630 0.00 0.00 0.00 3.68
3504 4324 8.254508 TGTCCCATTTATTGTTTATAGTTTGCC 58.745 33.333 0.00 0.00 0.00 4.52
3505 4325 7.709182 GTCCCATTTATTGTTTATAGTTTGCCC 59.291 37.037 0.00 0.00 0.00 5.36
3506 4326 6.989759 CCCATTTATTGTTTATAGTTTGCCCC 59.010 38.462 0.00 0.00 0.00 5.80
3507 4327 7.147567 CCCATTTATTGTTTATAGTTTGCCCCT 60.148 37.037 0.00 0.00 0.00 4.79
3508 4328 8.264347 CCATTTATTGTTTATAGTTTGCCCCTT 58.736 33.333 0.00 0.00 0.00 3.95
3509 4329 9.665719 CATTTATTGTTTATAGTTTGCCCCTTT 57.334 29.630 0.00 0.00 0.00 3.11
3510 4330 9.665719 ATTTATTGTTTATAGTTTGCCCCTTTG 57.334 29.630 0.00 0.00 0.00 2.77
3511 4331 5.476091 TTGTTTATAGTTTGCCCCTTTGG 57.524 39.130 0.00 0.00 37.09 3.28
3512 4332 4.484912 TGTTTATAGTTTGCCCCTTTGGT 58.515 39.130 0.00 0.00 36.04 3.67
3513 4333 4.902448 TGTTTATAGTTTGCCCCTTTGGTT 59.098 37.500 0.00 0.00 36.04 3.67
3514 4334 5.367060 TGTTTATAGTTTGCCCCTTTGGTTT 59.633 36.000 0.00 0.00 36.04 3.27
3515 4335 6.553852 TGTTTATAGTTTGCCCCTTTGGTTTA 59.446 34.615 0.00 0.00 36.04 2.01
3516 4336 6.844097 TTATAGTTTGCCCCTTTGGTTTAG 57.156 37.500 0.00 0.00 36.04 1.85
3517 4337 3.040655 AGTTTGCCCCTTTGGTTTAGT 57.959 42.857 0.00 0.00 36.04 2.24
3518 4338 2.698274 AGTTTGCCCCTTTGGTTTAGTG 59.302 45.455 0.00 0.00 36.04 2.74
3519 4339 2.432874 GTTTGCCCCTTTGGTTTAGTGT 59.567 45.455 0.00 0.00 36.04 3.55
3520 4340 1.989706 TGCCCCTTTGGTTTAGTGTC 58.010 50.000 0.00 0.00 36.04 3.67
3521 4341 1.215673 TGCCCCTTTGGTTTAGTGTCA 59.784 47.619 0.00 0.00 36.04 3.58
3522 4342 2.158385 TGCCCCTTTGGTTTAGTGTCAT 60.158 45.455 0.00 0.00 36.04 3.06
3523 4343 3.074687 TGCCCCTTTGGTTTAGTGTCATA 59.925 43.478 0.00 0.00 36.04 2.15
3524 4344 4.083565 GCCCCTTTGGTTTAGTGTCATAA 58.916 43.478 0.00 0.00 36.04 1.90
3525 4345 4.709886 GCCCCTTTGGTTTAGTGTCATAAT 59.290 41.667 0.00 0.00 36.04 1.28
3526 4346 5.889289 GCCCCTTTGGTTTAGTGTCATAATA 59.111 40.000 0.00 0.00 36.04 0.98
3527 4347 6.378848 GCCCCTTTGGTTTAGTGTCATAATAA 59.621 38.462 0.00 0.00 36.04 1.40
3528 4348 7.093684 GCCCCTTTGGTTTAGTGTCATAATAAA 60.094 37.037 0.00 0.00 36.04 1.40
3529 4349 8.808092 CCCCTTTGGTTTAGTGTCATAATAAAA 58.192 33.333 0.00 0.00 31.43 1.52
3560 4380 9.929722 AATGTGTATATTTGTAAGTTGCATACG 57.070 29.630 0.00 0.00 0.00 3.06
3561 4381 8.481974 TGTGTATATTTGTAAGTTGCATACGT 57.518 30.769 0.00 0.00 0.00 3.57
3562 4382 8.384365 TGTGTATATTTGTAAGTTGCATACGTG 58.616 33.333 0.00 0.00 0.00 4.49
3563 4383 8.385111 GTGTATATTTGTAAGTTGCATACGTGT 58.615 33.333 0.00 0.00 0.00 4.49
3564 4384 9.583765 TGTATATTTGTAAGTTGCATACGTGTA 57.416 29.630 0.00 0.00 0.00 2.90
3565 4385 9.839589 GTATATTTGTAAGTTGCATACGTGTAC 57.160 33.333 0.00 0.00 0.00 2.90
3566 4386 8.712285 ATATTTGTAAGTTGCATACGTGTACT 57.288 30.769 0.00 0.00 0.00 2.73
3567 4387 6.847956 TTTGTAAGTTGCATACGTGTACTT 57.152 33.333 0.00 0.88 36.75 2.24
3568 4388 6.847956 TTGTAAGTTGCATACGTGTACTTT 57.152 33.333 0.00 0.00 35.47 2.66
3569 4389 7.943413 TTGTAAGTTGCATACGTGTACTTTA 57.057 32.000 0.00 0.00 35.47 1.85
3570 4390 7.337150 TGTAAGTTGCATACGTGTACTTTAC 57.663 36.000 0.00 0.00 35.47 2.01
3571 4391 6.922407 TGTAAGTTGCATACGTGTACTTTACA 59.078 34.615 0.00 2.41 35.47 2.41
3572 4392 7.599621 TGTAAGTTGCATACGTGTACTTTACAT 59.400 33.333 0.00 0.00 41.34 2.29
3573 4393 7.429636 AAGTTGCATACGTGTACTTTACATT 57.570 32.000 0.00 0.00 41.34 2.71
3574 4394 6.827641 AGTTGCATACGTGTACTTTACATTG 58.172 36.000 0.00 0.00 41.34 2.82
3575 4395 5.788055 TGCATACGTGTACTTTACATTGG 57.212 39.130 0.00 0.00 41.34 3.16
3576 4396 4.093703 TGCATACGTGTACTTTACATTGGC 59.906 41.667 0.00 0.00 41.34 4.52
3577 4397 4.331717 GCATACGTGTACTTTACATTGGCT 59.668 41.667 0.00 0.00 41.34 4.75
3578 4398 5.521010 GCATACGTGTACTTTACATTGGCTA 59.479 40.000 0.00 0.00 41.34 3.93
3579 4399 6.202188 GCATACGTGTACTTTACATTGGCTAT 59.798 38.462 0.00 0.00 41.34 2.97
3580 4400 7.568861 GCATACGTGTACTTTACATTGGCTATC 60.569 40.741 0.00 0.00 41.34 2.08
3581 4401 4.802039 ACGTGTACTTTACATTGGCTATCG 59.198 41.667 0.00 0.00 41.34 2.92
3582 4402 4.802039 CGTGTACTTTACATTGGCTATCGT 59.198 41.667 0.00 0.00 41.34 3.73
3583 4403 5.051907 CGTGTACTTTACATTGGCTATCGTC 60.052 44.000 0.00 0.00 41.34 4.20
3584 4404 6.040878 GTGTACTTTACATTGGCTATCGTCT 58.959 40.000 0.00 0.00 41.34 4.18
3585 4405 6.198591 GTGTACTTTACATTGGCTATCGTCTC 59.801 42.308 0.00 0.00 41.34 3.36
3586 4406 5.599999 ACTTTACATTGGCTATCGTCTCT 57.400 39.130 0.00 0.00 0.00 3.10
3587 4407 6.710597 ACTTTACATTGGCTATCGTCTCTA 57.289 37.500 0.00 0.00 0.00 2.43
3588 4408 6.505272 ACTTTACATTGGCTATCGTCTCTAC 58.495 40.000 0.00 0.00 0.00 2.59
3589 4409 5.449107 TTACATTGGCTATCGTCTCTACC 57.551 43.478 0.00 0.00 0.00 3.18
3590 4410 3.567397 ACATTGGCTATCGTCTCTACCT 58.433 45.455 0.00 0.00 0.00 3.08
3591 4411 3.961408 ACATTGGCTATCGTCTCTACCTT 59.039 43.478 0.00 0.00 0.00 3.50
3592 4412 4.038162 ACATTGGCTATCGTCTCTACCTTC 59.962 45.833 0.00 0.00 0.00 3.46
3593 4413 2.219458 TGGCTATCGTCTCTACCTTCG 58.781 52.381 0.00 0.00 0.00 3.79
3594 4414 1.536331 GGCTATCGTCTCTACCTTCGG 59.464 57.143 0.00 0.00 0.00 4.30
3595 4415 2.492012 GCTATCGTCTCTACCTTCGGA 58.508 52.381 0.00 0.00 0.00 4.55
3596 4416 3.075884 GCTATCGTCTCTACCTTCGGAT 58.924 50.000 0.00 0.00 0.00 4.18
3597 4417 3.502979 GCTATCGTCTCTACCTTCGGATT 59.497 47.826 0.00 0.00 0.00 3.01
3598 4418 4.023021 GCTATCGTCTCTACCTTCGGATTT 60.023 45.833 0.00 0.00 0.00 2.17
3599 4419 5.180868 GCTATCGTCTCTACCTTCGGATTTA 59.819 44.000 0.00 0.00 0.00 1.40
3600 4420 6.127952 GCTATCGTCTCTACCTTCGGATTTAT 60.128 42.308 0.00 0.00 0.00 1.40
3601 4421 5.686159 TCGTCTCTACCTTCGGATTTATC 57.314 43.478 0.00 0.00 0.00 1.75
3602 4422 4.518211 TCGTCTCTACCTTCGGATTTATCC 59.482 45.833 0.00 0.00 43.65 2.59
3616 4436 5.885465 GGATTTATCCAACCATCCTCATCT 58.115 41.667 3.87 0.00 46.38 2.90
3617 4437 5.942826 GGATTTATCCAACCATCCTCATCTC 59.057 44.000 3.87 0.00 46.38 2.75
3618 4438 5.974156 TTTATCCAACCATCCTCATCTCA 57.026 39.130 0.00 0.00 0.00 3.27
3619 4439 5.974156 TTATCCAACCATCCTCATCTCAA 57.026 39.130 0.00 0.00 0.00 3.02
3620 4440 3.920231 TCCAACCATCCTCATCTCAAG 57.080 47.619 0.00 0.00 0.00 3.02
3621 4441 3.184628 TCCAACCATCCTCATCTCAAGT 58.815 45.455 0.00 0.00 0.00 3.16
3622 4442 3.588842 TCCAACCATCCTCATCTCAAGTT 59.411 43.478 0.00 0.00 0.00 2.66
3623 4443 3.693085 CCAACCATCCTCATCTCAAGTTG 59.307 47.826 0.00 0.00 34.55 3.16
3624 4444 4.330250 CAACCATCCTCATCTCAAGTTGT 58.670 43.478 2.11 0.00 31.13 3.32
3625 4445 4.647564 ACCATCCTCATCTCAAGTTGTT 57.352 40.909 2.11 0.00 0.00 2.83
3626 4446 4.583871 ACCATCCTCATCTCAAGTTGTTC 58.416 43.478 2.11 0.00 0.00 3.18
3627 4447 4.288105 ACCATCCTCATCTCAAGTTGTTCT 59.712 41.667 2.11 0.00 0.00 3.01
3628 4448 5.485353 ACCATCCTCATCTCAAGTTGTTCTA 59.515 40.000 2.11 0.00 0.00 2.10
3629 4449 6.013379 ACCATCCTCATCTCAAGTTGTTCTAA 60.013 38.462 2.11 0.00 0.00 2.10
3630 4450 6.314896 CCATCCTCATCTCAAGTTGTTCTAAC 59.685 42.308 2.11 0.00 0.00 2.34
3631 4451 6.419484 TCCTCATCTCAAGTTGTTCTAACA 57.581 37.500 2.11 0.00 37.08 2.41
3632 4452 7.009179 TCCTCATCTCAAGTTGTTCTAACAT 57.991 36.000 2.11 0.00 38.95 2.71
3633 4453 6.875726 TCCTCATCTCAAGTTGTTCTAACATG 59.124 38.462 2.11 0.00 38.95 3.21
3634 4454 6.875726 CCTCATCTCAAGTTGTTCTAACATGA 59.124 38.462 0.00 0.00 38.95 3.07
3635 4455 7.388776 CCTCATCTCAAGTTGTTCTAACATGAA 59.611 37.037 0.00 0.00 38.95 2.57
3636 4456 8.675705 TCATCTCAAGTTGTTCTAACATGAAA 57.324 30.769 0.00 0.00 38.95 2.69
3637 4457 8.559536 TCATCTCAAGTTGTTCTAACATGAAAC 58.440 33.333 0.00 0.00 38.95 2.78
3638 4458 8.562892 CATCTCAAGTTGTTCTAACATGAAACT 58.437 33.333 0.00 0.00 38.95 2.66
3639 4459 8.142994 TCTCAAGTTGTTCTAACATGAAACTC 57.857 34.615 0.00 0.00 38.95 3.01
3640 4460 7.987458 TCTCAAGTTGTTCTAACATGAAACTCT 59.013 33.333 0.00 0.03 38.95 3.24
3641 4461 8.506168 TCAAGTTGTTCTAACATGAAACTCTT 57.494 30.769 0.00 5.36 38.95 2.85
3642 4462 8.956426 TCAAGTTGTTCTAACATGAAACTCTTT 58.044 29.630 0.00 0.00 38.95 2.52
3643 4463 9.573133 CAAGTTGTTCTAACATGAAACTCTTTT 57.427 29.630 0.00 0.00 38.95 2.27
3661 4481 2.588027 TTTTTCCCGCAAAGTGTTCC 57.412 45.000 0.00 0.00 0.00 3.62
3662 4482 1.475403 TTTTCCCGCAAAGTGTTCCA 58.525 45.000 0.00 0.00 0.00 3.53
3663 4483 1.475403 TTTCCCGCAAAGTGTTCCAA 58.525 45.000 0.00 0.00 0.00 3.53
3664 4484 0.741915 TTCCCGCAAAGTGTTCCAAC 59.258 50.000 0.00 0.00 0.00 3.77
3665 4485 0.394488 TCCCGCAAAGTGTTCCAACA 60.394 50.000 0.00 0.00 36.38 3.33
3666 4486 0.673437 CCCGCAAAGTGTTCCAACAT 59.327 50.000 0.00 0.00 41.59 2.71
3667 4487 1.068434 CCCGCAAAGTGTTCCAACATT 59.932 47.619 0.00 0.00 41.59 2.71
3668 4488 2.482839 CCCGCAAAGTGTTCCAACATTT 60.483 45.455 0.00 0.00 41.59 2.32
3669 4489 3.243569 CCCGCAAAGTGTTCCAACATTTA 60.244 43.478 1.09 0.00 41.59 1.40
3670 4490 4.363999 CCGCAAAGTGTTCCAACATTTAA 58.636 39.130 1.09 0.00 41.59 1.52
3671 4491 4.208253 CCGCAAAGTGTTCCAACATTTAAC 59.792 41.667 1.09 0.00 41.59 2.01
3672 4492 5.040635 CGCAAAGTGTTCCAACATTTAACT 58.959 37.500 1.09 0.00 41.59 2.24
3673 4493 5.173131 CGCAAAGTGTTCCAACATTTAACTC 59.827 40.000 1.09 0.00 41.59 3.01
3674 4494 6.039616 GCAAAGTGTTCCAACATTTAACTCA 58.960 36.000 1.09 0.00 41.59 3.41
3675 4495 6.533367 GCAAAGTGTTCCAACATTTAACTCAA 59.467 34.615 1.09 0.00 41.59 3.02
3676 4496 7.064016 GCAAAGTGTTCCAACATTTAACTCAAA 59.936 33.333 1.09 0.00 41.59 2.69
3677 4497 9.097257 CAAAGTGTTCCAACATTTAACTCAAAT 57.903 29.630 1.09 0.00 41.59 2.32
3678 4498 9.665719 AAAGTGTTCCAACATTTAACTCAAATT 57.334 25.926 1.09 0.00 41.59 1.82
3679 4499 8.647143 AGTGTTCCAACATTTAACTCAAATTG 57.353 30.769 0.00 0.00 41.59 2.32
3680 4500 8.257306 AGTGTTCCAACATTTAACTCAAATTGT 58.743 29.630 0.00 0.00 41.59 2.71
3681 4501 8.327429 GTGTTCCAACATTTAACTCAAATTGTG 58.673 33.333 0.00 0.00 41.59 3.33
3682 4502 8.253810 TGTTCCAACATTTAACTCAAATTGTGA 58.746 29.630 1.79 0.00 34.49 3.58
3683 4503 9.092876 GTTCCAACATTTAACTCAAATTGTGAA 57.907 29.630 1.79 0.00 34.49 3.18
3684 4504 8.641499 TCCAACATTTAACTCAAATTGTGAAC 57.359 30.769 1.79 0.00 34.49 3.18
3685 4505 8.253810 TCCAACATTTAACTCAAATTGTGAACA 58.746 29.630 1.79 0.00 34.49 3.18
3686 4506 9.044150 CCAACATTTAACTCAAATTGTGAACAT 57.956 29.630 1.79 0.00 34.49 2.71
3819 4646 7.820044 AACTTAAATTTGCAAAAACTCGACA 57.180 28.000 17.19 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.540551 TCACGCTTGATGGCTTAATTACATTA 59.459 34.615 0.00 0.00 0.00 1.90
1 2 5.356751 TCACGCTTGATGGCTTAATTACATT 59.643 36.000 0.00 0.00 0.00 2.71
2 3 4.881273 TCACGCTTGATGGCTTAATTACAT 59.119 37.500 0.00 0.00 0.00 2.29
3 4 4.094294 GTCACGCTTGATGGCTTAATTACA 59.906 41.667 0.00 0.00 33.11 2.41
4 5 4.094294 TGTCACGCTTGATGGCTTAATTAC 59.906 41.667 0.00 0.00 33.11 1.89
5 6 4.257731 TGTCACGCTTGATGGCTTAATTA 58.742 39.130 0.00 0.00 33.11 1.40
6 7 3.081061 TGTCACGCTTGATGGCTTAATT 58.919 40.909 0.00 0.00 33.11 1.40
7 8 2.710377 TGTCACGCTTGATGGCTTAAT 58.290 42.857 0.00 0.00 33.11 1.40
8 9 2.177394 TGTCACGCTTGATGGCTTAA 57.823 45.000 0.00 0.00 33.11 1.85
9 10 2.009051 CATGTCACGCTTGATGGCTTA 58.991 47.619 0.00 0.00 33.11 3.09
10 11 0.806868 CATGTCACGCTTGATGGCTT 59.193 50.000 0.00 0.00 33.11 4.35
11 12 0.321919 ACATGTCACGCTTGATGGCT 60.322 50.000 0.00 0.00 33.11 4.75
12 13 1.368641 TACATGTCACGCTTGATGGC 58.631 50.000 0.00 0.00 33.11 4.40
13 14 4.418013 TTTTACATGTCACGCTTGATGG 57.582 40.909 0.00 0.00 33.11 3.51
14 15 7.909641 TGATTATTTTACATGTCACGCTTGATG 59.090 33.333 0.00 0.00 33.11 3.07
15 16 7.984391 TGATTATTTTACATGTCACGCTTGAT 58.016 30.769 0.00 0.00 33.11 2.57
16 17 7.371126 TGATTATTTTACATGTCACGCTTGA 57.629 32.000 0.00 0.00 0.00 3.02
17 18 9.882996 ATATGATTATTTTACATGTCACGCTTG 57.117 29.630 0.00 0.00 0.00 4.01
19 20 9.882996 CAATATGATTATTTTACATGTCACGCT 57.117 29.630 0.00 0.00 0.00 5.07
20 21 9.663904 ACAATATGATTATTTTACATGTCACGC 57.336 29.630 0.00 0.00 0.00 5.34
45 46 9.730705 GGGAAAGGGTTATATAACTATTGGTAC 57.269 37.037 21.86 5.82 36.47 3.34
46 47 8.893560 GGGGAAAGGGTTATATAACTATTGGTA 58.106 37.037 21.86 0.00 36.47 3.25
47 48 7.578940 AGGGGAAAGGGTTATATAACTATTGGT 59.421 37.037 21.86 6.46 36.47 3.67
48 49 7.996788 AGGGGAAAGGGTTATATAACTATTGG 58.003 38.462 21.86 0.00 36.47 3.16
49 50 9.877222 AAAGGGGAAAGGGTTATATAACTATTG 57.123 33.333 21.86 0.00 36.47 1.90
53 54 8.848830 TGTAAAAGGGGAAAGGGTTATATAACT 58.151 33.333 21.86 5.35 36.47 2.24
54 55 9.128404 CTGTAAAAGGGGAAAGGGTTATATAAC 57.872 37.037 15.98 15.98 35.50 1.89
55 56 7.781219 GCTGTAAAAGGGGAAAGGGTTATATAA 59.219 37.037 0.00 0.00 0.00 0.98
56 57 7.129816 AGCTGTAAAAGGGGAAAGGGTTATATA 59.870 37.037 0.00 0.00 0.00 0.86
57 58 6.068438 AGCTGTAAAAGGGGAAAGGGTTATAT 60.068 38.462 0.00 0.00 0.00 0.86
58 59 5.254501 AGCTGTAAAAGGGGAAAGGGTTATA 59.745 40.000 0.00 0.00 0.00 0.98
59 60 4.045462 AGCTGTAAAAGGGGAAAGGGTTAT 59.955 41.667 0.00 0.00 0.00 1.89
60 61 3.399983 AGCTGTAAAAGGGGAAAGGGTTA 59.600 43.478 0.00 0.00 0.00 2.85
61 62 2.179204 AGCTGTAAAAGGGGAAAGGGTT 59.821 45.455 0.00 0.00 0.00 4.11
62 63 1.787058 AGCTGTAAAAGGGGAAAGGGT 59.213 47.619 0.00 0.00 0.00 4.34
63 64 2.604912 AGCTGTAAAAGGGGAAAGGG 57.395 50.000 0.00 0.00 0.00 3.95
64 65 3.496331 TGAAGCTGTAAAAGGGGAAAGG 58.504 45.455 0.00 0.00 0.00 3.11
65 66 4.524328 ACATGAAGCTGTAAAAGGGGAAAG 59.476 41.667 0.00 0.00 0.00 2.62
66 67 4.479158 ACATGAAGCTGTAAAAGGGGAAA 58.521 39.130 0.00 0.00 0.00 3.13
67 68 4.112634 ACATGAAGCTGTAAAAGGGGAA 57.887 40.909 0.00 0.00 0.00 3.97
68 69 3.806949 ACATGAAGCTGTAAAAGGGGA 57.193 42.857 0.00 0.00 0.00 4.81
69 70 5.192927 TCATACATGAAGCTGTAAAAGGGG 58.807 41.667 0.00 0.00 35.37 4.79
70 71 6.757897 TTCATACATGAAGCTGTAAAAGGG 57.242 37.500 0.00 0.00 41.51 3.95
86 87 9.607988 ACACATTAGAACGGAATTATTCATACA 57.392 29.630 7.29 0.00 0.00 2.29
90 91 9.878667 TTCTACACATTAGAACGGAATTATTCA 57.121 29.630 7.29 0.00 0.00 2.57
94 95 9.661563 ACAATTCTACACATTAGAACGGAATTA 57.338 29.630 0.00 0.00 36.51 1.40
95 96 8.450964 CACAATTCTACACATTAGAACGGAATT 58.549 33.333 0.00 0.00 36.51 2.17
96 97 7.065803 CCACAATTCTACACATTAGAACGGAAT 59.934 37.037 0.00 0.00 36.51 3.01
97 98 6.370442 CCACAATTCTACACATTAGAACGGAA 59.630 38.462 0.00 0.00 36.51 4.30
98 99 5.872617 CCACAATTCTACACATTAGAACGGA 59.127 40.000 0.00 0.00 36.51 4.69
99 100 5.642063 ACCACAATTCTACACATTAGAACGG 59.358 40.000 0.00 0.00 36.51 4.44
100 101 6.721571 ACCACAATTCTACACATTAGAACG 57.278 37.500 0.00 0.00 36.51 3.95
101 102 8.021396 GGAAACCACAATTCTACACATTAGAAC 58.979 37.037 0.00 0.00 36.51 3.01
102 103 7.942341 AGGAAACCACAATTCTACACATTAGAA 59.058 33.333 0.00 0.00 37.87 2.10
103 104 7.458397 AGGAAACCACAATTCTACACATTAGA 58.542 34.615 0.00 0.00 0.00 2.10
104 105 7.687941 AGGAAACCACAATTCTACACATTAG 57.312 36.000 0.00 0.00 0.00 1.73
105 106 9.226606 CTTAGGAAACCACAATTCTACACATTA 57.773 33.333 0.00 0.00 0.00 1.90
106 107 7.309194 GCTTAGGAAACCACAATTCTACACATT 60.309 37.037 0.00 0.00 0.00 2.71
107 108 6.151144 GCTTAGGAAACCACAATTCTACACAT 59.849 38.462 0.00 0.00 0.00 3.21
108 109 5.472137 GCTTAGGAAACCACAATTCTACACA 59.528 40.000 0.00 0.00 0.00 3.72
109 110 5.472137 TGCTTAGGAAACCACAATTCTACAC 59.528 40.000 0.00 0.00 0.00 2.90
110 111 5.626142 TGCTTAGGAAACCACAATTCTACA 58.374 37.500 0.00 0.00 0.00 2.74
111 112 5.705905 ACTGCTTAGGAAACCACAATTCTAC 59.294 40.000 0.00 0.00 0.00 2.59
112 113 5.705441 CACTGCTTAGGAAACCACAATTCTA 59.295 40.000 0.00 0.00 0.00 2.10
113 114 4.520492 CACTGCTTAGGAAACCACAATTCT 59.480 41.667 0.00 0.00 0.00 2.40
114 115 4.278419 ACACTGCTTAGGAAACCACAATTC 59.722 41.667 0.00 0.00 0.00 2.17
115 116 4.215109 ACACTGCTTAGGAAACCACAATT 58.785 39.130 0.00 0.00 0.00 2.32
116 117 3.832527 ACACTGCTTAGGAAACCACAAT 58.167 40.909 0.00 0.00 0.00 2.71
117 118 3.290948 ACACTGCTTAGGAAACCACAA 57.709 42.857 0.00 0.00 0.00 3.33
118 119 3.290948 AACACTGCTTAGGAAACCACA 57.709 42.857 0.00 0.00 0.00 4.17
119 120 4.142249 ACAAAACACTGCTTAGGAAACCAC 60.142 41.667 0.00 0.00 0.00 4.16
120 121 4.020543 ACAAAACACTGCTTAGGAAACCA 58.979 39.130 0.00 0.00 0.00 3.67
121 122 4.142249 ACACAAAACACTGCTTAGGAAACC 60.142 41.667 0.00 0.00 0.00 3.27
122 123 4.798387 CACACAAAACACTGCTTAGGAAAC 59.202 41.667 0.00 0.00 0.00 2.78
123 124 4.676723 GCACACAAAACACTGCTTAGGAAA 60.677 41.667 0.00 0.00 0.00 3.13
124 125 3.181491 GCACACAAAACACTGCTTAGGAA 60.181 43.478 0.00 0.00 0.00 3.36
125 126 2.357637 GCACACAAAACACTGCTTAGGA 59.642 45.455 0.00 0.00 0.00 2.94
126 127 2.098934 TGCACACAAAACACTGCTTAGG 59.901 45.455 0.00 0.00 0.00 2.69
127 128 3.181497 ACTGCACACAAAACACTGCTTAG 60.181 43.478 0.00 0.00 0.00 2.18
128 129 2.752354 ACTGCACACAAAACACTGCTTA 59.248 40.909 0.00 0.00 0.00 3.09
129 130 1.545582 ACTGCACACAAAACACTGCTT 59.454 42.857 0.00 0.00 0.00 3.91
130 131 1.176527 ACTGCACACAAAACACTGCT 58.823 45.000 0.00 0.00 0.00 4.24
131 132 1.994916 AACTGCACACAAAACACTGC 58.005 45.000 0.00 0.00 0.00 4.40
132 133 2.092524 GCAAACTGCACACAAAACACTG 59.907 45.455 0.00 0.00 44.26 3.66
133 134 2.336667 GCAAACTGCACACAAAACACT 58.663 42.857 0.00 0.00 44.26 3.55
134 135 2.785879 GCAAACTGCACACAAAACAC 57.214 45.000 0.00 0.00 44.26 3.32
145 146 2.226674 GACAGACCCTTTAGCAAACTGC 59.773 50.000 0.00 0.00 45.46 4.40
146 147 3.744660 AGACAGACCCTTTAGCAAACTG 58.255 45.455 0.00 0.00 0.00 3.16
147 148 4.838986 TCTAGACAGACCCTTTAGCAAACT 59.161 41.667 0.00 0.00 0.00 2.66
148 149 5.148651 TCTAGACAGACCCTTTAGCAAAC 57.851 43.478 0.00 0.00 0.00 2.93
149 150 5.071250 TGTTCTAGACAGACCCTTTAGCAAA 59.929 40.000 0.00 0.00 33.40 3.68
150 151 4.591498 TGTTCTAGACAGACCCTTTAGCAA 59.409 41.667 0.00 0.00 33.40 3.91
151 152 4.021368 GTGTTCTAGACAGACCCTTTAGCA 60.021 45.833 0.00 0.00 39.39 3.49
152 153 4.021368 TGTGTTCTAGACAGACCCTTTAGC 60.021 45.833 0.00 0.00 39.39 3.09
153 154 5.723672 TGTGTTCTAGACAGACCCTTTAG 57.276 43.478 0.00 0.00 39.39 1.85
154 155 6.017192 AGATGTGTTCTAGACAGACCCTTTA 58.983 40.000 0.00 0.00 39.39 1.85
155 156 4.841246 AGATGTGTTCTAGACAGACCCTTT 59.159 41.667 0.00 0.00 39.39 3.11
156 157 4.421131 AGATGTGTTCTAGACAGACCCTT 58.579 43.478 0.00 0.00 39.39 3.95
157 158 4.054359 AGATGTGTTCTAGACAGACCCT 57.946 45.455 0.00 0.00 39.39 4.34
187 188 8.923683 CATCAGCTTAGATGTGACATAACTATG 58.076 37.037 0.00 0.92 40.35 2.23
201 202 4.029520 ACAGAGTGGACATCAGCTTAGAT 58.970 43.478 0.00 0.00 0.00 1.98
202 203 3.435275 ACAGAGTGGACATCAGCTTAGA 58.565 45.455 0.00 0.00 0.00 2.10
203 204 3.883830 ACAGAGTGGACATCAGCTTAG 57.116 47.619 0.00 0.00 0.00 2.18
204 205 4.202357 ACAAACAGAGTGGACATCAGCTTA 60.202 41.667 0.00 0.00 0.00 3.09
205 206 3.144506 CAAACAGAGTGGACATCAGCTT 58.855 45.455 0.00 0.00 0.00 3.74
206 207 2.105477 ACAAACAGAGTGGACATCAGCT 59.895 45.455 0.00 0.00 0.00 4.24
207 208 2.225019 CACAAACAGAGTGGACATCAGC 59.775 50.000 0.00 0.00 33.43 4.26
253 254 9.709495 ACAATGTATAATGCAACAACAAGAAAT 57.291 25.926 0.00 0.00 0.00 2.17
254 255 8.976471 CACAATGTATAATGCAACAACAAGAAA 58.024 29.630 0.00 0.00 0.00 2.52
255 256 7.598118 CCACAATGTATAATGCAACAACAAGAA 59.402 33.333 0.00 0.00 0.00 2.52
256 257 7.089538 CCACAATGTATAATGCAACAACAAGA 58.910 34.615 0.00 0.00 0.00 3.02
257 258 6.310956 CCCACAATGTATAATGCAACAACAAG 59.689 38.462 0.00 0.00 0.00 3.16
258 259 6.015095 TCCCACAATGTATAATGCAACAACAA 60.015 34.615 0.00 0.00 0.00 2.83
259 260 5.478332 TCCCACAATGTATAATGCAACAACA 59.522 36.000 0.00 0.00 0.00 3.33
260 261 5.960113 TCCCACAATGTATAATGCAACAAC 58.040 37.500 0.00 0.00 0.00 3.32
261 262 5.394005 GCTCCCACAATGTATAATGCAACAA 60.394 40.000 0.00 0.00 0.00 2.83
262 263 4.097741 GCTCCCACAATGTATAATGCAACA 59.902 41.667 0.00 0.00 0.00 3.33
263 264 4.339247 AGCTCCCACAATGTATAATGCAAC 59.661 41.667 0.00 0.00 0.00 4.17
264 265 4.535781 AGCTCCCACAATGTATAATGCAA 58.464 39.130 0.00 0.00 0.00 4.08
265 266 4.169059 AGCTCCCACAATGTATAATGCA 57.831 40.909 0.00 0.00 0.00 3.96
266 267 5.997746 TCTAAGCTCCCACAATGTATAATGC 59.002 40.000 0.00 0.00 0.00 3.56
267 268 7.663081 ACATCTAAGCTCCCACAATGTATAATG 59.337 37.037 0.00 0.00 0.00 1.90
268 269 7.663081 CACATCTAAGCTCCCACAATGTATAAT 59.337 37.037 0.00 0.00 0.00 1.28
269 270 6.992123 CACATCTAAGCTCCCACAATGTATAA 59.008 38.462 0.00 0.00 0.00 0.98
270 271 6.326323 TCACATCTAAGCTCCCACAATGTATA 59.674 38.462 0.00 0.00 0.00 1.47
271 272 5.130975 TCACATCTAAGCTCCCACAATGTAT 59.869 40.000 0.00 0.00 0.00 2.29
272 273 4.469586 TCACATCTAAGCTCCCACAATGTA 59.530 41.667 0.00 0.00 0.00 2.29
273 274 3.264193 TCACATCTAAGCTCCCACAATGT 59.736 43.478 0.00 0.00 0.00 2.71
274 275 3.624861 GTCACATCTAAGCTCCCACAATG 59.375 47.826 0.00 0.00 0.00 2.82
275 276 3.264193 TGTCACATCTAAGCTCCCACAAT 59.736 43.478 0.00 0.00 0.00 2.71
276 277 2.637382 TGTCACATCTAAGCTCCCACAA 59.363 45.455 0.00 0.00 0.00 3.33
277 278 2.256306 TGTCACATCTAAGCTCCCACA 58.744 47.619 0.00 0.00 0.00 4.17
278 279 3.462021 GATGTCACATCTAAGCTCCCAC 58.538 50.000 10.81 0.00 0.00 4.61
279 280 2.435805 GGATGTCACATCTAAGCTCCCA 59.564 50.000 17.46 0.00 0.00 4.37
280 281 2.703007 AGGATGTCACATCTAAGCTCCC 59.297 50.000 17.46 0.00 0.00 4.30
281 282 4.414337 AAGGATGTCACATCTAAGCTCC 57.586 45.455 17.46 0.18 0.00 4.70
282 283 9.547753 TTATTTAAGGATGTCACATCTAAGCTC 57.452 33.333 17.46 0.00 0.00 4.09
283 284 9.331282 GTTATTTAAGGATGTCACATCTAAGCT 57.669 33.333 17.46 3.19 0.00 3.74
284 285 9.109393 TGTTATTTAAGGATGTCACATCTAAGC 57.891 33.333 17.46 0.73 0.00 3.09
309 310 9.376075 ACAGTTTGTCTAATTCACATCTAGATG 57.624 33.333 27.63 27.63 44.15 2.90
310 311 9.950496 AACAGTTTGTCTAATTCACATCTAGAT 57.050 29.630 0.00 0.00 0.00 1.98
311 312 9.778741 AAACAGTTTGTCTAATTCACATCTAGA 57.221 29.630 0.00 0.00 0.00 2.43
312 313 9.817365 CAAACAGTTTGTCTAATTCACATCTAG 57.183 33.333 16.77 0.00 35.94 2.43
313 314 8.289618 GCAAACAGTTTGTCTAATTCACATCTA 58.710 33.333 23.96 0.00 42.56 1.98
314 315 7.013655 AGCAAACAGTTTGTCTAATTCACATCT 59.986 33.333 23.96 7.74 42.56 2.90
315 316 7.141363 AGCAAACAGTTTGTCTAATTCACATC 58.859 34.615 23.96 5.79 42.56 3.06
316 317 7.042797 AGCAAACAGTTTGTCTAATTCACAT 57.957 32.000 23.96 0.00 42.56 3.21
317 318 6.449635 AGCAAACAGTTTGTCTAATTCACA 57.550 33.333 23.96 0.00 42.56 3.58
318 319 8.850454 TTAAGCAAACAGTTTGTCTAATTCAC 57.150 30.769 23.96 7.05 42.56 3.18
319 320 9.462174 CATTAAGCAAACAGTTTGTCTAATTCA 57.538 29.630 23.96 7.00 42.56 2.57
320 321 8.915654 CCATTAAGCAAACAGTTTGTCTAATTC 58.084 33.333 23.96 8.31 42.56 2.17
321 322 8.421002 ACCATTAAGCAAACAGTTTGTCTAATT 58.579 29.630 23.96 14.43 42.56 1.40
322 323 7.951591 ACCATTAAGCAAACAGTTTGTCTAAT 58.048 30.769 23.96 21.15 42.56 1.73
323 324 7.341445 ACCATTAAGCAAACAGTTTGTCTAA 57.659 32.000 23.96 20.16 42.56 2.10
324 325 6.952773 ACCATTAAGCAAACAGTTTGTCTA 57.047 33.333 23.96 14.15 42.56 2.59
325 326 5.852282 ACCATTAAGCAAACAGTTTGTCT 57.148 34.783 23.96 18.53 42.56 3.41
326 327 5.810074 ACAACCATTAAGCAAACAGTTTGTC 59.190 36.000 23.96 16.88 42.56 3.18
327 328 5.729510 ACAACCATTAAGCAAACAGTTTGT 58.270 33.333 23.96 10.44 42.56 2.83
328 329 6.660887 AACAACCATTAAGCAAACAGTTTG 57.339 33.333 20.10 20.10 43.44 2.93
329 330 6.652900 ACAAACAACCATTAAGCAAACAGTTT 59.347 30.769 0.00 0.00 0.00 2.66
330 331 6.091986 CACAAACAACCATTAAGCAAACAGTT 59.908 34.615 0.00 0.00 0.00 3.16
331 332 5.580297 CACAAACAACCATTAAGCAAACAGT 59.420 36.000 0.00 0.00 0.00 3.55
332 333 5.809562 TCACAAACAACCATTAAGCAAACAG 59.190 36.000 0.00 0.00 0.00 3.16
333 334 5.724328 TCACAAACAACCATTAAGCAAACA 58.276 33.333 0.00 0.00 0.00 2.83
334 335 5.810074 ACTCACAAACAACCATTAAGCAAAC 59.190 36.000 0.00 0.00 0.00 2.93
335 336 5.971763 ACTCACAAACAACCATTAAGCAAA 58.028 33.333 0.00 0.00 0.00 3.68
336 337 5.590530 ACTCACAAACAACCATTAAGCAA 57.409 34.783 0.00 0.00 0.00 3.91
337 338 5.590530 AACTCACAAACAACCATTAAGCA 57.409 34.783 0.00 0.00 0.00 3.91
338 339 6.273071 AGAAACTCACAAACAACCATTAAGC 58.727 36.000 0.00 0.00 0.00 3.09
343 344 8.739972 GGAATATAGAAACTCACAAACAACCAT 58.260 33.333 0.00 0.00 0.00 3.55
344 345 7.942341 AGGAATATAGAAACTCACAAACAACCA 59.058 33.333 0.00 0.00 0.00 3.67
345 346 8.336801 AGGAATATAGAAACTCACAAACAACC 57.663 34.615 0.00 0.00 0.00 3.77
392 393 7.090953 ACAAAGTCACCGACTGATTTAAAAA 57.909 32.000 0.00 0.00 42.59 1.94
393 394 6.687081 ACAAAGTCACCGACTGATTTAAAA 57.313 33.333 0.00 0.00 42.59 1.52
394 395 6.687081 AACAAAGTCACCGACTGATTTAAA 57.313 33.333 0.00 0.00 42.59 1.52
395 396 6.687081 AAACAAAGTCACCGACTGATTTAA 57.313 33.333 0.00 0.00 42.59 1.52
396 397 6.687081 AAAACAAAGTCACCGACTGATTTA 57.313 33.333 0.00 0.00 42.59 1.40
397 398 5.576447 AAAACAAAGTCACCGACTGATTT 57.424 34.783 0.00 0.00 42.59 2.17
398 399 5.576447 AAAAACAAAGTCACCGACTGATT 57.424 34.783 0.00 0.00 42.59 2.57
426 427 0.392595 GTCACCGACTGAATTCCCCC 60.393 60.000 2.27 0.00 0.00 5.40
427 428 0.613777 AGTCACCGACTGAATTCCCC 59.386 55.000 2.27 0.00 41.76 4.81
428 429 3.492829 GGATAGTCACCGACTGAATTCCC 60.493 52.174 6.90 0.00 43.30 3.97
429 430 3.132289 TGGATAGTCACCGACTGAATTCC 59.868 47.826 6.90 8.12 43.30 3.01
430 431 4.386867 TGGATAGTCACCGACTGAATTC 57.613 45.455 6.90 0.00 43.30 2.17
482 485 7.027161 CCGATGGGTTTTTATTACTGAACTTG 58.973 38.462 0.00 0.00 0.00 3.16
488 491 4.156922 TGTGCCGATGGGTTTTTATTACTG 59.843 41.667 0.00 0.00 34.97 2.74
490 493 4.705337 TGTGCCGATGGGTTTTTATTAC 57.295 40.909 0.00 0.00 34.97 1.89
500 503 1.080569 GCTTTGTTGTGCCGATGGG 60.081 57.895 0.00 0.00 0.00 4.00
506 509 4.921847 TGCGCGCTTTGTTGTGCC 62.922 61.111 33.29 0.00 40.78 5.01
538 541 8.781196 GCAAATTCTCATAGATAGATGAAGCAA 58.219 33.333 0.00 0.00 35.44 3.91
570 573 2.494073 TCAACAAACCAAACCAGACCAC 59.506 45.455 0.00 0.00 0.00 4.16
572 575 3.517602 GTTCAACAAACCAAACCAGACC 58.482 45.455 0.00 0.00 31.20 3.85
637 640 3.510388 TTAGAAGATCAGCTCACCGTG 57.490 47.619 0.00 0.00 0.00 4.94
639 642 4.748892 TCTTTTAGAAGATCAGCTCACCG 58.251 43.478 0.00 0.00 36.99 4.94
640 643 7.440523 TTTTCTTTTAGAAGATCAGCTCACC 57.559 36.000 0.00 0.00 41.35 4.02
703 1411 4.469227 TCCCCTCTTTCTCTTCTGATTCTG 59.531 45.833 0.00 0.00 0.00 3.02
722 1430 3.821600 GGAAAGAGAGAAGTTTGTTCCCC 59.178 47.826 0.00 0.00 0.00 4.81
736 1444 1.134220 ACAACGCACTTGGGAAAGAGA 60.134 47.619 0.00 0.00 33.66 3.10
737 1445 1.264288 GACAACGCACTTGGGAAAGAG 59.736 52.381 0.00 0.00 33.66 2.85
744 1452 1.157870 ACGAAGGACAACGCACTTGG 61.158 55.000 0.00 0.00 33.66 3.61
800 1508 2.639970 CTTGGCGACATGGGTTTGA 58.360 52.632 0.00 0.00 42.32 2.69
860 1571 4.383770 CCGGACATGACAGGTAATTTAGGT 60.384 45.833 0.00 0.00 0.00 3.08
943 1661 1.429463 GAAGCTGGTTTCGTGTCGAT 58.571 50.000 0.00 0.00 35.23 3.59
987 1705 0.103208 GGTCCATGTCCTAGCTCGTG 59.897 60.000 0.00 0.00 0.00 4.35
998 1716 2.711922 GCGAGGTCGAGGTCCATGT 61.712 63.158 2.94 0.00 43.02 3.21
1063 1781 2.987547 GTCGGTCTCGGTGGTGGA 60.988 66.667 0.00 0.00 36.95 4.02
1118 1836 1.813753 GCAACGGCGAGGATGCTTA 60.814 57.895 16.62 0.00 35.02 3.09
1138 1860 3.291167 GAAAGAACGGTCGGTGCGC 62.291 63.158 0.00 0.00 0.00 6.09
1139 1861 1.219522 AAGAAAGAACGGTCGGTGCG 61.220 55.000 0.00 0.00 0.00 5.34
1177 1919 0.847670 CACGAACACGCAAGAACGTA 59.152 50.000 0.00 0.00 46.34 3.57
1204 1949 1.586422 CATCCTTGTCATACCCTGCG 58.414 55.000 0.00 0.00 0.00 5.18
1367 2112 2.957489 CACGTCGAACACACGGCA 60.957 61.111 0.00 0.00 41.73 5.69
1708 2456 3.343788 CTCCACGAGCGTCTCCACC 62.344 68.421 0.00 0.00 0.00 4.61
1774 2522 2.045242 TCCTCCTCGACCTCCACG 60.045 66.667 0.00 0.00 0.00 4.94
1798 2546 1.070445 GATGTCCTGCATCGGAGGG 59.930 63.158 1.41 0.00 43.75 4.30
1805 2553 0.897621 TCACACTCGATGTCCTGCAT 59.102 50.000 0.00 0.00 40.64 3.96
1809 2557 0.522180 GACGTCACACTCGATGTCCT 59.478 55.000 11.55 0.00 43.31 3.85
1810 2558 0.793478 CGACGTCACACTCGATGTCC 60.793 60.000 17.16 0.00 45.33 4.02
1851 2599 3.695606 TCTCCACCGGCAGCTCAC 61.696 66.667 0.00 0.00 0.00 3.51
2161 2942 2.529744 GGGTGGTGGCTCCTCAACT 61.530 63.158 7.19 0.00 37.07 3.16
2201 2997 4.011517 TTCCAAGGGCGGGTCGAC 62.012 66.667 7.13 7.13 0.00 4.20
2202 2998 4.011517 GTTCCAAGGGCGGGTCGA 62.012 66.667 0.00 0.00 0.00 4.20
2210 3006 4.426313 GGGAGGCGGTTCCAAGGG 62.426 72.222 3.38 0.00 39.09 3.95
2211 3007 3.646715 TGGGAGGCGGTTCCAAGG 61.647 66.667 3.38 0.00 39.09 3.61
2212 3008 2.359975 GTGGGAGGCGGTTCCAAG 60.360 66.667 3.38 0.00 39.09 3.61
2213 3009 4.323477 CGTGGGAGGCGGTTCCAA 62.323 66.667 3.38 0.00 39.09 3.53
2253 3049 2.288025 GGTGGCTCCTCAACCGGTA 61.288 63.158 8.00 0.00 0.00 4.02
2257 3053 2.034221 GGTGGTGGCTCCTCAACC 59.966 66.667 7.19 2.58 37.07 3.77
2298 3094 4.629523 GTTCCACGGGCGGGTCAA 62.630 66.667 0.00 0.00 0.00 3.18
2308 3104 4.096003 ATGGGAGGCGGTTCCACG 62.096 66.667 3.38 0.00 39.09 4.94
2309 3105 2.438434 CATGGGAGGCGGTTCCAC 60.438 66.667 3.38 0.00 39.09 4.02
2727 3523 3.901797 CTCCTCAACCGGTGGTGGC 62.902 68.421 23.11 0.00 35.34 5.01
2735 3531 2.358737 GTGGTGGCTCCTCAACCG 60.359 66.667 7.19 0.00 37.07 4.44
2806 3602 2.501610 GTCCATCGGTGGCTCCTC 59.498 66.667 10.80 0.00 45.63 3.71
2939 3735 4.082523 GCTCCTGCGCTGGTGGTA 62.083 66.667 29.57 12.18 0.00 3.25
3034 3845 2.602257 TCAGTGCTACCATCCGATTG 57.398 50.000 0.00 0.00 0.00 2.67
3235 4046 1.648467 GAGCCGAGCCACACCAATTC 61.648 60.000 0.00 0.00 0.00 2.17
3236 4047 1.675641 GAGCCGAGCCACACCAATT 60.676 57.895 0.00 0.00 0.00 2.32
3256 4067 2.241190 CGCGTGTTACACAGTGGCA 61.241 57.895 16.09 0.00 33.40 4.92
3270 4081 7.864686 TCTATACATACAAGTATACAACGCGT 58.135 34.615 5.58 5.58 36.23 6.01
3305 4116 6.879188 TTCCGTGACAAGAAAAATCAAAAC 57.121 33.333 0.00 0.00 0.00 2.43
3337 4149 4.314522 TCCTTGTATCATGGCAAAAGGA 57.685 40.909 12.61 12.61 40.58 3.36
3338 4150 5.404466 TTTCCTTGTATCATGGCAAAAGG 57.596 39.130 9.17 9.17 36.36 3.11
3339 4151 7.148373 CCAAATTTCCTTGTATCATGGCAAAAG 60.148 37.037 0.00 0.00 0.00 2.27
3343 4155 4.161942 CCCAAATTTCCTTGTATCATGGCA 59.838 41.667 0.00 0.00 0.00 4.92
3351 4163 5.796502 ATCCTCTCCCAAATTTCCTTGTA 57.203 39.130 0.00 0.00 0.00 2.41
3380 4192 1.829222 CGTTCAACTAGAAGCCCCCTA 59.171 52.381 0.00 0.00 36.78 3.53
3381 4193 0.613777 CGTTCAACTAGAAGCCCCCT 59.386 55.000 0.00 0.00 36.78 4.79
3388 4200 1.294138 CGCCCCCGTTCAACTAGAA 59.706 57.895 0.00 0.00 0.00 2.10
3391 4203 2.604079 TCCGCCCCCGTTCAACTA 60.604 61.111 0.00 0.00 0.00 2.24
3413 4233 2.212752 TCCCCCTCATGCCTAAATCT 57.787 50.000 0.00 0.00 0.00 2.40
3423 4243 5.937492 ATATTCTTGTTCATCCCCCTCAT 57.063 39.130 0.00 0.00 0.00 2.90
3428 4248 6.183360 TGCAATCAATATTCTTGTTCATCCCC 60.183 38.462 8.38 0.00 0.00 4.81
3429 4249 6.698766 GTGCAATCAATATTCTTGTTCATCCC 59.301 38.462 0.00 0.00 0.00 3.85
3437 4257 7.416817 TGTATTCCGTGCAATCAATATTCTTG 58.583 34.615 0.00 3.81 0.00 3.02
3450 4270 3.142174 TGTGATGTTTGTATTCCGTGCA 58.858 40.909 0.00 0.00 0.00 4.57
3479 4299 7.709182 GGGCAAACTATAAACAATAAATGGGAC 59.291 37.037 0.00 0.00 0.00 4.46
3480 4300 7.147637 GGGGCAAACTATAAACAATAAATGGGA 60.148 37.037 0.00 0.00 0.00 4.37
3481 4301 6.989759 GGGGCAAACTATAAACAATAAATGGG 59.010 38.462 0.00 0.00 0.00 4.00
3482 4302 7.791029 AGGGGCAAACTATAAACAATAAATGG 58.209 34.615 0.00 0.00 0.00 3.16
3483 4303 9.665719 AAAGGGGCAAACTATAAACAATAAATG 57.334 29.630 0.00 0.00 0.00 2.32
3484 4304 9.665719 CAAAGGGGCAAACTATAAACAATAAAT 57.334 29.630 0.00 0.00 0.00 1.40
3485 4305 8.097662 CCAAAGGGGCAAACTATAAACAATAAA 58.902 33.333 0.00 0.00 0.00 1.40
3486 4306 7.235812 ACCAAAGGGGCAAACTATAAACAATAA 59.764 33.333 0.00 0.00 42.05 1.40
3487 4307 6.726764 ACCAAAGGGGCAAACTATAAACAATA 59.273 34.615 0.00 0.00 42.05 1.90
3488 4308 5.546110 ACCAAAGGGGCAAACTATAAACAAT 59.454 36.000 0.00 0.00 42.05 2.71
3489 4309 4.902448 ACCAAAGGGGCAAACTATAAACAA 59.098 37.500 0.00 0.00 42.05 2.83
3490 4310 4.484912 ACCAAAGGGGCAAACTATAAACA 58.515 39.130 0.00 0.00 42.05 2.83
3491 4311 5.477607 AACCAAAGGGGCAAACTATAAAC 57.522 39.130 0.00 0.00 42.05 2.01
3492 4312 6.783482 ACTAAACCAAAGGGGCAAACTATAAA 59.217 34.615 0.00 0.00 42.05 1.40
3493 4313 6.209788 CACTAAACCAAAGGGGCAAACTATAA 59.790 38.462 0.00 0.00 42.05 0.98
3494 4314 5.712917 CACTAAACCAAAGGGGCAAACTATA 59.287 40.000 0.00 0.00 42.05 1.31
3495 4315 4.526650 CACTAAACCAAAGGGGCAAACTAT 59.473 41.667 0.00 0.00 42.05 2.12
3496 4316 3.892588 CACTAAACCAAAGGGGCAAACTA 59.107 43.478 0.00 0.00 42.05 2.24
3497 4317 2.698274 CACTAAACCAAAGGGGCAAACT 59.302 45.455 0.00 0.00 42.05 2.66
3498 4318 2.432874 ACACTAAACCAAAGGGGCAAAC 59.567 45.455 0.00 0.00 42.05 2.93
3499 4319 2.696187 GACACTAAACCAAAGGGGCAAA 59.304 45.455 0.00 0.00 42.05 3.68
3500 4320 2.312390 GACACTAAACCAAAGGGGCAA 58.688 47.619 0.00 0.00 42.05 4.52
3501 4321 1.215673 TGACACTAAACCAAAGGGGCA 59.784 47.619 0.00 0.00 42.05 5.36
3502 4322 1.989706 TGACACTAAACCAAAGGGGC 58.010 50.000 0.00 0.00 42.05 5.80
3503 4323 7.948034 TTATTATGACACTAAACCAAAGGGG 57.052 36.000 0.00 0.00 44.81 4.79
3534 4354 9.929722 CGTATGCAACTTACAAATATACACATT 57.070 29.630 0.00 0.00 0.00 2.71
3535 4355 9.104965 ACGTATGCAACTTACAAATATACACAT 57.895 29.630 0.00 0.00 0.00 3.21
3536 4356 8.384365 CACGTATGCAACTTACAAATATACACA 58.616 33.333 0.00 0.00 0.00 3.72
3537 4357 8.385111 ACACGTATGCAACTTACAAATATACAC 58.615 33.333 0.00 0.00 0.00 2.90
3538 4358 8.481974 ACACGTATGCAACTTACAAATATACA 57.518 30.769 0.00 0.00 0.00 2.29
3539 4359 9.839589 GTACACGTATGCAACTTACAAATATAC 57.160 33.333 0.00 0.00 0.00 1.47
3540 4360 9.806203 AGTACACGTATGCAACTTACAAATATA 57.194 29.630 0.00 0.00 0.00 0.86
3541 4361 8.712285 AGTACACGTATGCAACTTACAAATAT 57.288 30.769 0.00 0.00 0.00 1.28
3542 4362 8.537049 AAGTACACGTATGCAACTTACAAATA 57.463 30.769 0.00 0.00 34.95 1.40
3543 4363 7.429636 AAGTACACGTATGCAACTTACAAAT 57.570 32.000 0.00 0.00 34.95 2.32
3544 4364 6.847956 AAGTACACGTATGCAACTTACAAA 57.152 33.333 0.00 0.00 34.95 2.83
3545 4365 6.847956 AAAGTACACGTATGCAACTTACAA 57.152 33.333 0.00 0.00 35.40 2.41
3546 4366 6.922407 TGTAAAGTACACGTATGCAACTTACA 59.078 34.615 0.00 0.00 35.40 2.41
3547 4367 7.337150 TGTAAAGTACACGTATGCAACTTAC 57.663 36.000 0.00 0.00 35.40 2.34
3548 4368 8.436970 CAATGTAAAGTACACGTATGCAACTTA 58.563 33.333 0.00 0.00 42.23 2.24
3549 4369 7.295201 CAATGTAAAGTACACGTATGCAACTT 58.705 34.615 0.00 0.00 42.23 2.66
3550 4370 6.128391 CCAATGTAAAGTACACGTATGCAACT 60.128 38.462 0.00 0.00 42.23 3.16
3551 4371 6.019152 CCAATGTAAAGTACACGTATGCAAC 58.981 40.000 0.00 0.00 42.23 4.17
3552 4372 5.391097 GCCAATGTAAAGTACACGTATGCAA 60.391 40.000 0.00 0.00 42.23 4.08
3553 4373 4.093703 GCCAATGTAAAGTACACGTATGCA 59.906 41.667 0.00 0.00 42.23 3.96
3554 4374 4.331717 AGCCAATGTAAAGTACACGTATGC 59.668 41.667 0.00 0.00 42.23 3.14
3555 4375 7.358105 CGATAGCCAATGTAAAGTACACGTATG 60.358 40.741 0.00 0.00 42.23 2.39
3556 4376 6.639686 CGATAGCCAATGTAAAGTACACGTAT 59.360 38.462 0.00 0.00 42.23 3.06
3557 4377 5.972973 CGATAGCCAATGTAAAGTACACGTA 59.027 40.000 0.00 0.00 42.23 3.57
3558 4378 4.802039 CGATAGCCAATGTAAAGTACACGT 59.198 41.667 0.00 0.00 42.23 4.49
3559 4379 4.802039 ACGATAGCCAATGTAAAGTACACG 59.198 41.667 0.00 0.00 40.33 4.49
3560 4380 6.040878 AGACGATAGCCAATGTAAAGTACAC 58.959 40.000 0.00 0.00 40.33 2.90
3561 4381 6.096423 AGAGACGATAGCCAATGTAAAGTACA 59.904 38.462 0.00 0.00 41.44 2.90
3562 4382 6.505272 AGAGACGATAGCCAATGTAAAGTAC 58.495 40.000 0.00 0.00 42.67 2.73
3563 4383 6.710597 AGAGACGATAGCCAATGTAAAGTA 57.289 37.500 0.00 0.00 42.67 2.24
3564 4384 5.599999 AGAGACGATAGCCAATGTAAAGT 57.400 39.130 0.00 0.00 42.67 2.66
3565 4385 5.921408 GGTAGAGACGATAGCCAATGTAAAG 59.079 44.000 0.00 0.00 42.67 1.85
3566 4386 5.597182 AGGTAGAGACGATAGCCAATGTAAA 59.403 40.000 0.00 0.00 42.67 2.01
3567 4387 5.138276 AGGTAGAGACGATAGCCAATGTAA 58.862 41.667 0.00 0.00 42.67 2.41
3568 4388 4.726583 AGGTAGAGACGATAGCCAATGTA 58.273 43.478 0.00 0.00 42.67 2.29
3569 4389 3.567397 AGGTAGAGACGATAGCCAATGT 58.433 45.455 0.00 0.00 42.67 2.71
3570 4390 4.551388 GAAGGTAGAGACGATAGCCAATG 58.449 47.826 0.00 0.00 42.67 2.82
3571 4391 3.253677 CGAAGGTAGAGACGATAGCCAAT 59.746 47.826 0.00 0.00 42.67 3.16
3572 4392 2.617308 CGAAGGTAGAGACGATAGCCAA 59.383 50.000 0.00 0.00 42.67 4.52
3573 4393 2.219458 CGAAGGTAGAGACGATAGCCA 58.781 52.381 0.00 0.00 42.67 4.75
3574 4394 2.973419 CGAAGGTAGAGACGATAGCC 57.027 55.000 0.00 0.00 42.67 3.93
3594 4414 6.537355 TGAGATGAGGATGGTTGGATAAATC 58.463 40.000 0.00 0.00 0.00 2.17
3595 4415 6.520021 TGAGATGAGGATGGTTGGATAAAT 57.480 37.500 0.00 0.00 0.00 1.40
3596 4416 5.974156 TGAGATGAGGATGGTTGGATAAA 57.026 39.130 0.00 0.00 0.00 1.40
3597 4417 5.429762 ACTTGAGATGAGGATGGTTGGATAA 59.570 40.000 0.00 0.00 0.00 1.75
3598 4418 4.971282 ACTTGAGATGAGGATGGTTGGATA 59.029 41.667 0.00 0.00 0.00 2.59
3599 4419 3.784763 ACTTGAGATGAGGATGGTTGGAT 59.215 43.478 0.00 0.00 0.00 3.41
3600 4420 3.184628 ACTTGAGATGAGGATGGTTGGA 58.815 45.455 0.00 0.00 0.00 3.53
3601 4421 3.641434 ACTTGAGATGAGGATGGTTGG 57.359 47.619 0.00 0.00 0.00 3.77
3602 4422 4.330250 ACAACTTGAGATGAGGATGGTTG 58.670 43.478 0.00 0.00 38.75 3.77
3603 4423 4.647564 ACAACTTGAGATGAGGATGGTT 57.352 40.909 0.00 0.00 0.00 3.67
3604 4424 4.288105 AGAACAACTTGAGATGAGGATGGT 59.712 41.667 0.00 0.00 0.00 3.55
3605 4425 4.841422 AGAACAACTTGAGATGAGGATGG 58.159 43.478 0.00 0.00 0.00 3.51
3606 4426 6.875726 TGTTAGAACAACTTGAGATGAGGATG 59.124 38.462 0.00 0.00 35.67 3.51
3607 4427 7.009179 TGTTAGAACAACTTGAGATGAGGAT 57.991 36.000 0.00 0.00 35.67 3.24
3608 4428 6.419484 TGTTAGAACAACTTGAGATGAGGA 57.581 37.500 0.00 0.00 35.67 3.71
3609 4429 6.875726 TCATGTTAGAACAACTTGAGATGAGG 59.124 38.462 0.00 0.00 43.03 3.86
3610 4430 7.895975 TCATGTTAGAACAACTTGAGATGAG 57.104 36.000 0.00 0.00 43.03 2.90
3611 4431 8.559536 GTTTCATGTTAGAACAACTTGAGATGA 58.440 33.333 0.00 0.00 43.03 2.92
3612 4432 8.562892 AGTTTCATGTTAGAACAACTTGAGATG 58.437 33.333 0.00 0.00 43.03 2.90
3613 4433 8.682936 AGTTTCATGTTAGAACAACTTGAGAT 57.317 30.769 0.00 0.00 43.03 2.75
3614 4434 7.987458 AGAGTTTCATGTTAGAACAACTTGAGA 59.013 33.333 0.00 0.00 43.03 3.27
3615 4435 8.147642 AGAGTTTCATGTTAGAACAACTTGAG 57.852 34.615 0.00 0.00 43.03 3.02
3616 4436 8.506168 AAGAGTTTCATGTTAGAACAACTTGA 57.494 30.769 0.00 0.00 43.03 3.02
3617 4437 9.573133 AAAAGAGTTTCATGTTAGAACAACTTG 57.427 29.630 0.00 0.00 43.03 3.16
3642 4462 1.825474 TGGAACACTTTGCGGGAAAAA 59.175 42.857 0.00 0.00 0.00 1.94
3643 4463 1.475403 TGGAACACTTTGCGGGAAAA 58.525 45.000 0.00 0.00 0.00 2.29
3644 4464 1.135333 GTTGGAACACTTTGCGGGAAA 59.865 47.619 0.00 0.00 39.29 3.13
3645 4465 0.741915 GTTGGAACACTTTGCGGGAA 59.258 50.000 0.00 0.00 39.29 3.97
3646 4466 0.394488 TGTTGGAACACTTTGCGGGA 60.394 50.000 0.00 0.00 39.29 5.14
3647 4467 0.673437 ATGTTGGAACACTTTGCGGG 59.327 50.000 0.00 0.00 42.51 6.13
3648 4468 2.507339 AATGTTGGAACACTTTGCGG 57.493 45.000 0.00 0.00 42.51 5.69
3649 4469 5.040635 AGTTAAATGTTGGAACACTTTGCG 58.959 37.500 0.00 0.00 42.51 4.85
3650 4470 6.039616 TGAGTTAAATGTTGGAACACTTTGC 58.960 36.000 0.00 0.00 42.51 3.68
3651 4471 8.472683 TTTGAGTTAAATGTTGGAACACTTTG 57.527 30.769 0.00 0.00 42.51 2.77
3652 4472 9.665719 AATTTGAGTTAAATGTTGGAACACTTT 57.334 25.926 0.00 0.99 42.51 2.66
3653 4473 9.097257 CAATTTGAGTTAAATGTTGGAACACTT 57.903 29.630 0.00 0.00 42.51 3.16
3654 4474 8.257306 ACAATTTGAGTTAAATGTTGGAACACT 58.743 29.630 2.79 0.00 42.51 3.55
3655 4475 8.327429 CACAATTTGAGTTAAATGTTGGAACAC 58.673 33.333 2.79 0.00 42.51 3.32
3656 4476 8.253810 TCACAATTTGAGTTAAATGTTGGAACA 58.746 29.630 2.79 0.00 44.06 3.18
3657 4477 8.641499 TCACAATTTGAGTTAAATGTTGGAAC 57.359 30.769 2.79 0.00 38.93 3.62
3658 4478 9.092876 GTTCACAATTTGAGTTAAATGTTGGAA 57.907 29.630 2.79 0.00 38.93 3.53
3659 4479 8.253810 TGTTCACAATTTGAGTTAAATGTTGGA 58.746 29.630 2.79 0.00 38.93 3.53
3660 4480 8.417780 TGTTCACAATTTGAGTTAAATGTTGG 57.582 30.769 2.79 0.00 38.93 3.77
3683 4503 8.768955 GCGATGATCTAGTTGATTCTTAAATGT 58.231 33.333 0.00 0.00 35.14 2.71
3684 4504 8.226448 GGCGATGATCTAGTTGATTCTTAAATG 58.774 37.037 0.00 0.00 35.14 2.32
3685 4505 7.116948 CGGCGATGATCTAGTTGATTCTTAAAT 59.883 37.037 0.00 0.00 35.14 1.40
3686 4506 6.420903 CGGCGATGATCTAGTTGATTCTTAAA 59.579 38.462 0.00 0.00 35.14 1.52
3687 4507 5.920840 CGGCGATGATCTAGTTGATTCTTAA 59.079 40.000 0.00 0.00 35.14 1.85
3688 4508 5.461526 CGGCGATGATCTAGTTGATTCTTA 58.538 41.667 0.00 0.00 35.14 2.10
3689 4509 4.302455 CGGCGATGATCTAGTTGATTCTT 58.698 43.478 0.00 0.00 35.14 2.52
3694 4514 0.032130 GCCGGCGATGATCTAGTTGA 59.968 55.000 12.58 0.00 0.00 3.18
3819 4646 9.531158 AGGTCTAAGTAACTGAGTAATGTAACT 57.469 33.333 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.