AutoCloner

Multiple sequence alignment - TraesCS2D01G076200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G076200	chr2D	100.000	3208	0	0	1	3208	32556965	32560172	0.000000e+00	5925.0
1	TraesCS2D01G076200	chr2D	92.298	1636	85	28	715	2327	32597921	32599538	0.000000e+00	2285.0
2	TraesCS2D01G076200	chr2D	92.082	1465	89	15	754	2201	32521810	32520356	0.000000e+00	2037.0
3	TraesCS2D01G076200	chr2D	85.613	1265	143	19	956	2205	32595799	32594559	0.000000e+00	1291.0
4	TraesCS2D01G076200	chr2D	83.001	753	86	26	2387	3108	32520170	32519429	0.000000e+00	643.0
5	TraesCS2D01G076200	chr2D	90.517	116	8	2	2236	2348	32520362	32520247	1.990000e-32	150.0
6	TraesCS2D01G076200	chr2D	78.838	241	33	8	2349	2572	32599619	32599858	2.580000e-31	147.0
7	TraesCS2D01G076200	chr2D	73.804	397	80	18	1223	1607	321911477	321911093	5.580000e-28	135.0
8	TraesCS2D01G076200	chr2D	82.895	76	13	0	2668	2743	642259957	642259882	5.740000e-08	69.4
9	TraesCS2D01G076200	chrUn	92.298	1636	85	28	715	2327	285396139	285394522	0.000000e+00	2285.0
10	TraesCS2D01G076200	chrUn	94.745	609	11	7	1	609	91454106	91453519	0.000000e+00	928.0
11	TraesCS2D01G076200	chrUn	78.992	238	32	8	2352	2572	285394438	285394202	2.580000e-31	147.0
12	TraesCS2D01G076200	chrUn	80.952	105	12	6	3057	3159	3345973	3345875	3.430000e-10	76.8
13	TraesCS2D01G076200	chr2B	90.567	1728	101	22	645	2348	53521181	53519492	0.000000e+00	2231.0
14	TraesCS2D01G076200	chr2B	87.589	1692	111	37	616	2284	53577083	53578698	0.000000e+00	1869.0
15	TraesCS2D01G076200	chr2B	82.759	638	60	23	2558	3159	53517715	53517092	1.020000e-144	523.0
16	TraesCS2D01G076200	chr2B	89.091	220	23	1	2353	2572	53519443	53519225	4.080000e-69	272.0
17	TraesCS2D01G076200	chr2B	73.804	397	80	18	1223	1607	390114827	390114443	5.580000e-28	135.0
18	TraesCS2D01G076200	chr2B	78.571	182	24	9	2940	3108	196154845	196155024	4.380000e-19	106.0
19	TraesCS2D01G076200	chr2A	91.427	1563	97	11	649	2201	35584715	35583180	0.000000e+00	2109.0
20	TraesCS2D01G076200	chr2A	89.001	1591	107	28	616	2198	35629803	35631333	0.000000e+00	1906.0
21	TraesCS2D01G076200	chr2A	93.660	347	19	3	2396	2742	35582781	35582438	1.710000e-142	516.0
22	TraesCS2D01G076200	chr2A	83.166	398	39	16	2780	3159	35581817	35581430	3.960000e-89	339.0
23	TraesCS2D01G076200	chr2A	84.797	296	24	5	2932	3208	35632305	35632598	8.760000e-71	278.0
24	TraesCS2D01G076200	chr2A	85.590	229	23	6	2732	2953	35631719	35631944	6.920000e-57	231.0
25	TraesCS2D01G076200	chr2A	90.517	116	8	2	2236	2348	35583186	35583071	1.990000e-32	150.0
26	TraesCS2D01G076200	chr2A	80.189	106	17	3	3057	3159	473638216	473638112	3.430000e-10	76.8
27	TraesCS2D01G076200	chr1D	96.895	612	16	3	1	610	23443045	23443655	0.000000e+00	1022.0
28	TraesCS2D01G076200	chr1D	94.625	614	10	7	1	611	404278497	404279090	0.000000e+00	929.0
29	TraesCS2D01G076200	chr1D	94.262	610	14	7	1	609	295137810	295138399	0.000000e+00	913.0
30	TraesCS2D01G076200	chr1D	82.857	105	10	6	3057	3159	24774690	24774592	1.590000e-13	87.9
31	TraesCS2D01G076200	chr7D	94.935	612	10	7	1	611	376952931	376953522	0.000000e+00	939.0
32	TraesCS2D01G076200	chr7D	94.516	620	13	10	1	619	365385557	365384958	0.000000e+00	937.0
33	TraesCS2D01G076200	chr4D	94.763	611	11	7	1	611	471412811	471413400	0.000000e+00	931.0
34	TraesCS2D01G076200	chr4D	94.098	610	12	9	1	609	24262696	24263282	0.000000e+00	905.0
35	TraesCS2D01G076200	chr4D	92.520	615	12	5	1	613	455617535	455618117	0.000000e+00	850.0
36	TraesCS2D01G076200	chr4D	99.492	197	0	1	1	196	472925068	472925264	1.090000e-94	357.0
37	TraesCS2D01G076200	chr3D	94.754	610	11	7	1	609	596079758	596079169	0.000000e+00	929.0
38	TraesCS2D01G076200	chr3D	75.921	353	67	14	2755	3103	593259941	593259603	7.120000e-37	165.0
39	TraesCS2D01G076200	chr5D	94.472	615	13	7	1	614	227458782	227458188	0.000000e+00	928.0
40	TraesCS2D01G076200	chr5D	90.323	93	7	2	2860	2952	453883480	453883570	1.560000e-23	121.0
41	TraesCS2D01G076200	chr5B	81.250	128	10	13	2837	2952	554638226	554638351	1.230000e-14	91.6
42	TraesCS2D01G076200	chr3B	83.333	102	11	5	3062	3159	148066450	148066549	4.410000e-14	89.8
43	TraesCS2D01G076200	chr3A	83.333	102	10	4	3057	3151	549908246	549908347	1.590000e-13	87.9
44	TraesCS2D01G076200	chr4B	82.243	107	12	4	3060	3159	125961214	125961320	5.700000e-13	86.1
45	TraesCS2D01G076200	chr1B	82.474	97	12	4	3057	3150	562512732	562512638	2.650000e-11	80.5
46	TraesCS2D01G076200	chr6B	84.416	77	6	6	2861	2932	152299832	152299907	1.600000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G076200	chr2D	32556965	32560172	3207	False	5925.000000	5925	100.000000	1	3208	1	chr2D.!!$F1	3207
1	TraesCS2D01G076200	chr2D	32594559	32595799	1240	True	1291.000000	1291	85.613000	956	2205	1	chr2D.!!$R1	1249
2	TraesCS2D01G076200	chr2D	32597921	32599858	1937	False	1216.000000	2285	85.568000	715	2572	2	chr2D.!!$F2	1857
3	TraesCS2D01G076200	chr2D	32519429	32521810	2381	True	943.333333	2037	88.533333	754	3108	3	chr2D.!!$R4	2354
4	TraesCS2D01G076200	chrUn	285394202	285396139	1937	True	1216.000000	2285	85.645000	715	2572	2	chrUn.!!$R3	1857
5	TraesCS2D01G076200	chrUn	91453519	91454106	587	True	928.000000	928	94.745000	1	609	1	chrUn.!!$R2	608
6	TraesCS2D01G076200	chr2B	53577083	53578698	1615	False	1869.000000	1869	87.589000	616	2284	1	chr2B.!!$F1	1668
7	TraesCS2D01G076200	chr2B	53517092	53521181	4089	True	1008.666667	2231	87.472333	645	3159	3	chr2B.!!$R2	2514
8	TraesCS2D01G076200	chr2A	35629803	35632598	2795	False	805.000000	1906	86.462667	616	3208	3	chr2A.!!$F1	2592
9	TraesCS2D01G076200	chr2A	35581430	35584715	3285	True	778.500000	2109	89.692500	649	3159	4	chr2A.!!$R2	2510
10	TraesCS2D01G076200	chr1D	23443045	23443655	610	False	1022.000000	1022	96.895000	1	610	1	chr1D.!!$F1	609
11	TraesCS2D01G076200	chr1D	404278497	404279090	593	False	929.000000	929	94.625000	1	611	1	chr1D.!!$F3	610
12	TraesCS2D01G076200	chr1D	295137810	295138399	589	False	913.000000	913	94.262000	1	609	1	chr1D.!!$F2	608
13	TraesCS2D01G076200	chr7D	376952931	376953522	591	False	939.000000	939	94.935000	1	611	1	chr7D.!!$F1	610
14	TraesCS2D01G076200	chr7D	365384958	365385557	599	True	937.000000	937	94.516000	1	619	1	chr7D.!!$R1	618
15	TraesCS2D01G076200	chr4D	471412811	471413400	589	False	931.000000	931	94.763000	1	611	1	chr4D.!!$F3	610
16	TraesCS2D01G076200	chr4D	24262696	24263282	586	False	905.000000	905	94.098000	1	609	1	chr4D.!!$F1	608
17	TraesCS2D01G076200	chr4D	455617535	455618117	582	False	850.000000	850	92.520000	1	613	1	chr4D.!!$F2	612
18	TraesCS2D01G076200	chr3D	596079169	596079758	589	True	929.000000	929	94.754000	1	609	1	chr3D.!!$R2	608
19	TraesCS2D01G076200	chr5D	227458188	227458782	594	True	928.000000	928	94.472000	1	614	1	chr5D.!!$R1	613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
848	889	0.037232	CTCCGAAGAACTGTCCACCC	60.037	60.0	0.0	0.0	0.0	4.61	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2377	2610	0.51079	TTTACGACGTGCATGCACAG	59.489	50.0	40.95	34.31	46.47	3.66	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
438	468	1.272704	GGATCCAGCTCCCCTGTTTTT	60.273	52.381	6.95	0.00	40.06	1.94
508	538	1.597854	CAACGGCTGCTTCAGTCCA	60.598	57.895	0.00	0.00	31.65	4.02
614	644	3.995526	CAGATCGCTGCCCTTATGA	57.004	52.632	0.00	0.00	34.95	2.15
636	666	7.385778	TGAAAACGGGGAGAATAGTAATTTG	57.614	36.000	0.00	0.00	0.00	2.32
660	690	2.488355	CCGCGGACGTACACAGAT	59.512	61.111	24.07	0.00	37.70	2.90
765	805	3.206150	GGATTGGAATATGACACGTGCT	58.794	45.455	17.22	2.46	0.00	4.40
777	817	1.856597	ACACGTGCTTGTACTTCGTTC	59.143	47.619	17.22	0.00	32.47	3.95
785	825	2.124011	TGTACTTCGTTCACGTCCAC	57.876	50.000	0.00	0.00	40.80	4.02
808	848	2.098117	CGATTAGTAACCGACGGTCCTT	59.902	50.000	22.00	7.55	33.12	3.36
848	889	0.037232	CTCCGAAGAACTGTCCACCC	60.037	60.000	0.00	0.00	0.00	4.61
895	940	2.399448	GATCGGAATCTCCTCGAAAGC	58.601	52.381	0.00	0.00	36.49	3.51
917	962	4.822350	GCAGGAGAAAGGTTACAACTCTTT	59.178	41.667	7.74	7.74	34.42	2.52
949	1001	4.010349	AGTTCCAATTCAAACTCCGGATC	58.990	43.478	3.57	0.00	29.89	3.36
955	1007	3.433306	TTCAAACTCCGGATCCAATGT	57.567	42.857	13.41	3.57	0.00	2.71
1144	1205	1.587043	TTCTCGCCGTCTCTCTGGTG	61.587	60.000	0.00	0.00	37.09	4.17
1468	1529	2.407616	CTCTACATCGCCGACGCA	59.592	61.111	0.00	0.00	39.84	5.24
2204	2284	4.152284	GCCTAGTTGCCTAGTTACCAAT	57.848	45.455	0.00	0.00	39.29	3.16
2205	2285	5.286267	GCCTAGTTGCCTAGTTACCAATA	57.714	43.478	0.00	0.00	39.29	1.90
2208	2288	6.427242	GCCTAGTTGCCTAGTTACCAATAATC	59.573	42.308	0.00	0.00	39.29	1.75
2209	2289	6.935208	CCTAGTTGCCTAGTTACCAATAATCC	59.065	42.308	0.00	0.00	39.29	3.01
2211	2291	7.685849	AGTTGCCTAGTTACCAATAATCCTA	57.314	36.000	0.00	0.00	0.00	2.94
2212	2292	8.276453	AGTTGCCTAGTTACCAATAATCCTAT	57.724	34.615	0.00	0.00	0.00	2.57
2213	2293	9.388672	AGTTGCCTAGTTACCAATAATCCTATA	57.611	33.333	0.00	0.00	0.00	1.31
2214	2294	9.433153	GTTGCCTAGTTACCAATAATCCTATAC	57.567	37.037	0.00	0.00	0.00	1.47
2215	2295	7.833786	TGCCTAGTTACCAATAATCCTATACG	58.166	38.462	0.00	0.00	0.00	3.06
2287	2446	4.265904	TGTCATAATGTGGTCAGTCGTT	57.734	40.909	0.00	0.00	0.00	3.85
2361	2594	6.767902	AGAAACAATATTAGACGATGGCATGT	59.232	34.615	3.81	3.19	0.00	3.21
2363	2596	8.621532	AAACAATATTAGACGATGGCATGTAT	57.378	30.769	3.81	3.57	0.00	2.29
2375	2608	4.200838	TGGCATGTATATATCGTGTGGG	57.799	45.455	0.00	0.00	0.00	4.61
2377	2610	4.181578	GGCATGTATATATCGTGTGGGAC	58.818	47.826	0.00	0.00	0.00	4.46
2383	2616	0.901827	ATATCGTGTGGGACTGTGCA	59.098	50.000	0.77	0.00	0.00	4.57
2403	2818	4.212911	GCATGCACGTCGTAAAACTTAAA	58.787	39.130	14.21	0.00	0.00	1.52
2409	2824	6.019237	TGCACGTCGTAAAACTTAAATACACA	60.019	34.615	0.00	0.00	0.00	3.72
2466	2888	5.793817	TGGATCGAAATTCTCTCAGTTCAA	58.206	37.500	0.00	0.00	0.00	2.69
2500	2922	0.869730	GAACAAAGGCCGAACGCTTA	59.130	50.000	0.00	0.00	37.74	3.09
2523	2947	6.471233	AGTCTTCCATCGAATGACAATAGA	57.529	37.500	0.00	0.00	32.79	1.98
2590	4546	7.890169	AATAGCCTAATAACCACCTTATCCT	57.110	36.000	0.00	0.00	0.00	3.24
2606	4562	6.672657	ACCTTATCCTGTAGTTATGGTCAACT	59.327	38.462	0.00	0.00	41.56	3.16
2644	4601	2.061848	TCCTGATCCTTTTGACCACCA	58.938	47.619	0.00	0.00	0.00	4.17
2659	4616	4.759693	TGACCACCAGTTAGTAAAATGCAG	59.240	41.667	0.00	0.00	29.32	4.41
2680	4637	7.471721	TGCAGTTTATATGTAAGTTGCATGAC	58.528	34.615	15.82	9.24	36.71	3.06
2819	5359	4.825085	TCTTATTGAGCTTGAAACCCGTTT	59.175	37.500	0.00	0.00	35.14	3.60
2821	5362	1.314730	TGAGCTTGAAACCCGTTTCC	58.685	50.000	15.76	3.18	46.15	3.13
2823	5364	1.266989	GAGCTTGAAACCCGTTTCCTG	59.733	52.381	15.76	10.27	46.15	3.86
2876	5424	6.960992	GCTTTTGCCTTTTCTGTTTTTAGTTG	59.039	34.615	0.00	0.00	40.15	3.16
2877	5425	7.360861	GCTTTTGCCTTTTCTGTTTTTAGTTGT	60.361	33.333	0.00	0.00	40.15	3.32
2924	5479	4.202050	GGGATGTTGGATGAGTGTAAATGC	60.202	45.833	0.00	0.00	0.00	3.56
3039	5980	1.604755	TGCGGTTTCGTTGCATAGTTT	59.395	42.857	0.00	0.00	38.89	2.66
3108	6068	5.079643	ACCAATGCCACTAATTCAGTCTTT	58.920	37.500	0.00	0.00	34.26	2.52
3109	6069	5.539955	ACCAATGCCACTAATTCAGTCTTTT	59.460	36.000	0.00	0.00	34.26	2.27
3110	6070	6.095377	CCAATGCCACTAATTCAGTCTTTTC	58.905	40.000	0.00	0.00	34.26	2.29
3113	6073	6.707440	TGCCACTAATTCAGTCTTTTCAAA	57.293	33.333	0.00	0.00	34.26	2.69
3115	6075	7.370383	TGCCACTAATTCAGTCTTTTCAAATC	58.630	34.615	0.00	0.00	34.26	2.17
3117	6077	7.540055	GCCACTAATTCAGTCTTTTCAAATCAG	59.460	37.037	0.00	0.00	34.26	2.90
3191	6159	6.833933	AGAAACTTCTTATTTGTGAACCCACT	59.166	34.615	0.00	0.00	38.00	4.00
3196	6164	9.975218	ACTTCTTATTTGTGAACCCACTATTAT	57.025	29.630	0.00	0.00	43.55	1.28
3202	6170	8.766994	ATTTGTGAACCCACTATTATATGCTT	57.233	30.769	0.00	0.00	43.55	3.91

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
210	234	2.811317	CGGTCGAGGTTGCAGCTC	60.811	66.667	0.00	3.06	39.24	4.09
211	235	4.379243	CCGGTCGAGGTTGCAGCT	62.379	66.667	0.00	0.00	0.00	4.24
216	240	3.285523	TTACGGCCGGTCGAGGTTG	62.286	63.158	38.47	4.83	0.00	3.77
438	468	0.391228	TACGAACAGCCACAGCAAGA	59.609	50.000	0.00	0.00	43.56	3.02
496	526	1.596260	CGCATACATGGACTGAAGCAG	59.404	52.381	0.00	0.00	37.52	4.24
508	538	2.061773	GTTAGATCTGCGCGCATACAT	58.938	47.619	36.48	25.50	0.00	2.29
562	592	2.203280	CAACAGTTGGGCCGGTCA	60.203	61.111	9.07	1.16	0.00	4.02
611	641	7.416326	GCAAATTACTATTCTCCCCGTTTTCAT	60.416	37.037	0.00	0.00	0.00	2.57
612	642	6.127842	GCAAATTACTATTCTCCCCGTTTTCA	60.128	38.462	0.00	0.00	0.00	2.69
613	643	6.263344	GCAAATTACTATTCTCCCCGTTTTC	58.737	40.000	0.00	0.00	0.00	2.29
614	644	5.163693	CGCAAATTACTATTCTCCCCGTTTT	60.164	40.000	0.00	0.00	0.00	2.43
765	805	2.462889	GTGGACGTGAACGAAGTACAA	58.537	47.619	10.26	0.00	45.00	2.41
777	817	2.533266	GTTACTAATCGGGTGGACGTG	58.467	52.381	0.00	0.00	34.94	4.49
785	825	0.740737	ACCGTCGGTTACTAATCGGG	59.259	55.000	12.23	0.00	41.82	5.14
830	870	1.477685	GGGGTGGACAGTTCTTCGGA	61.478	60.000	0.00	0.00	0.00	4.55
862	907	0.040336	TCCGATCGAGCTGTAATCGC	60.040	55.000	18.66	0.00	40.62	4.58
873	918	1.963172	TTCGAGGAGATTCCGATCGA	58.037	50.000	18.66	0.00	42.75	3.59
874	919	2.656085	CTTTCGAGGAGATTCCGATCG	58.344	52.381	8.51	8.51	42.75	3.69
875	920	2.223829	TGCTTTCGAGGAGATTCCGATC	60.224	50.000	2.41	0.00	42.75	3.69
876	921	1.757118	TGCTTTCGAGGAGATTCCGAT	59.243	47.619	2.41	0.00	42.75	4.18
895	940	6.292150	AGAAAGAGTTGTAACCTTTCTCCTG	58.708	40.000	21.92	0.00	44.18	3.86
949	1001	4.533919	TTAAAGGGCACAATCACATTGG	57.466	40.909	0.00	0.00	44.42	3.16
955	1007	4.584874	TCGAGATTTAAAGGGCACAATCA	58.415	39.130	0.00	0.00	0.00	2.57
1468	1529	1.143813	CCCTCATGAGCCCCTTGTAT	58.856	55.000	17.76	0.00	0.00	2.29
1758	1838	1.442184	CGCGTCGTACTTGAGCAGT	60.442	57.895	0.00	0.00	39.87	4.40
2287	2446	6.978674	TTATGTCCACCAACAAATTAACCA	57.021	33.333	0.00	0.00	31.81	3.67
2334	2506	5.527214	TGCCATCGTCTAATATTGTTTCTGG	59.473	40.000	0.00	0.01	0.00	3.86
2361	2594	3.892588	TGCACAGTCCCACACGATATATA	59.107	43.478	0.00	0.00	0.00	0.86
2363	2596	2.104170	TGCACAGTCCCACACGATATA	58.896	47.619	0.00	0.00	0.00	0.86
2375	2608	1.006825	TACGACGTGCATGCACAGTC	61.007	55.000	37.64	37.64	46.47	3.51
2377	2610	0.510790	TTTACGACGTGCATGCACAG	59.489	50.000	40.95	34.31	46.47	3.66
2383	2616	7.011189	GTGTATTTAAGTTTTACGACGTGCAT	58.989	34.615	11.56	0.00	0.00	3.96
2466	2888	5.239525	GCCTTTGTTCGCCAAATAGATCTAT	59.760	40.000	9.57	9.57	42.02	1.98
2500	2922	6.462207	CCTCTATTGTCATTCGATGGAAGACT	60.462	42.308	15.51	5.21	35.19	3.24
2590	4546	9.865321	GTTTACATCTAGTTGACCATAACTACA	57.135	33.333	7.81	0.00	41.01	2.74
2680	4637	5.665916	ATAGACTGGCCCAAATTTGAAAG	57.334	39.130	19.86	12.40	0.00	2.62
2831	5372	7.637631	AAAGCAAAAACACATAAAAATGGGT	57.362	28.000	0.00	0.00	40.44	4.51
2832	5373	7.043524	GCAAAAGCAAAAACACATAAAAATGGG	60.044	33.333	0.00	0.00	0.00	4.00
2833	5374	7.043524	GGCAAAAGCAAAAACACATAAAAATGG	60.044	33.333	0.00	0.00	0.00	3.16
2884	5439	8.371699	CCAACATCCCAAAAATAACCTTAAAGA	58.628	33.333	0.00	0.00	0.00	2.52
2890	5445	6.022315	TCATCCAACATCCCAAAAATAACCT	58.978	36.000	0.00	0.00	0.00	3.50
2893	5448	6.496565	ACACTCATCCAACATCCCAAAAATAA	59.503	34.615	0.00	0.00	0.00	1.40
3011	5952	2.368685	CAACGAAACCGCACAGTTTAC	58.631	47.619	0.00	0.00	40.01	2.01
3017	5958	0.515127	CTATGCAACGAAACCGCACA	59.485	50.000	0.00	0.00	38.73	4.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.