Multiple sequence alignment - TraesCS2D01G076000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G076000 chr2D 100.000 3130 0 0 1 3130 32522489 32519360 0.000000e+00 5781.0
1 TraesCS2D01G076000 chr2D 92.082 1465 89 15 680 2134 32557718 32559165 0.000000e+00 2037.0
2 TraesCS2D01G076000 chr2D 91.695 1457 91 15 686 2132 32597959 32599395 0.000000e+00 1993.0
3 TraesCS2D01G076000 chr2D 85.919 1257 141 21 871 2121 32595804 32594578 0.000000e+00 1308.0
4 TraesCS2D01G076000 chr2D 82.872 759 88 26 2314 3061 32559345 32560072 0.000000e+00 643.0
5 TraesCS2D01G076000 chr2D 80.796 427 39 20 2124 2513 32599437 32599857 8.490000e-76 294.0
6 TraesCS2D01G076000 chr2D 90.517 116 8 2 2128 2243 32559200 32559312 1.940000e-32 150.0
7 TraesCS2D01G076000 chr2D 87.500 80 6 3 2630 2708 642259928 642259852 4.300000e-14 89.8
8 TraesCS2D01G076000 chr2D 97.727 44 1 0 128 171 32522111 32522068 3.350000e-10 76.8
9 TraesCS2D01G076000 chr2D 97.727 44 1 0 379 422 32522362 32522319 3.350000e-10 76.8
10 TraesCS2D01G076000 chr2D 85.938 64 3 5 3068 3129 32519479 32519420 2.610000e-06 63.9
11 TraesCS2D01G076000 chr2A 91.341 1640 97 20 690 2319 35584598 35582994 0.000000e+00 2200.0
12 TraesCS2D01G076000 chr2A 88.263 1721 122 36 743 2436 35629973 35631640 0.000000e+00 1986.0
13 TraesCS2D01G076000 chr2A 93.731 335 11 7 2738 3066 35581814 35581484 7.800000e-136 494.0
14 TraesCS2D01G076000 chr2A 87.597 387 25 8 2329 2704 35582781 35582407 8.020000e-116 427.0
15 TraesCS2D01G076000 chr2A 86.532 297 21 14 2623 2907 35631655 35631944 3.030000e-80 309.0
16 TraesCS2D01G076000 chr2A 90.625 64 5 1 2835 2897 204932132 204932195 2.000000e-12 84.2
17 TraesCS2D01G076000 chrUn 91.695 1457 91 15 686 2132 285396101 285394665 0.000000e+00 1993.0
18 TraesCS2D01G076000 chrUn 80.796 427 39 20 2124 2513 285394623 285394203 8.490000e-76 294.0
19 TraesCS2D01G076000 chr2B 89.952 1453 93 24 690 2132 53521060 53519651 0.000000e+00 1825.0
20 TraesCS2D01G076000 chr2B 89.900 1406 91 21 733 2132 53577242 53578602 0.000000e+00 1762.0
21 TraesCS2D01G076000 chr2B 89.447 597 36 10 2500 3078 53517715 53517128 0.000000e+00 728.0
22 TraesCS2D01G076000 chr2B 89.924 526 36 7 172 682 620216238 620215715 0.000000e+00 662.0
23 TraesCS2D01G076000 chr2B 83.879 397 35 14 2128 2513 53519604 53519226 4.970000e-93 351.0
24 TraesCS2D01G076000 chr2B 75.879 398 70 20 1147 1531 390114827 390114443 2.480000e-41 180.0
25 TraesCS2D01G076000 chr2B 80.556 180 25 4 2878 3056 245304635 245304465 2.530000e-26 130.0
26 TraesCS2D01G076000 chr2B 92.857 70 4 1 2251 2319 53578741 53578810 1.990000e-17 100.0
27 TraesCS2D01G076000 chr3B 89.734 526 38 7 172 682 48880298 48879774 0.000000e+00 658.0
28 TraesCS2D01G076000 chr3B 82.737 475 79 3 1643 2114 465069303 465069777 1.340000e-113 420.0
29 TraesCS2D01G076000 chr4A 86.943 314 34 7 172 484 535260963 535260656 2.310000e-91 346.0
30 TraesCS2D01G076000 chr4B 86.943 314 28 8 172 484 90707813 90708114 1.080000e-89 340.0
31 TraesCS2D01G076000 chr4B 84.524 84 4 8 2807 2884 17478902 17478982 1.200000e-09 75.0
32 TraesCS2D01G076000 chr6D 83.125 160 20 6 2900 3054 289021347 289021504 4.210000e-29 139.0
33 TraesCS2D01G076000 chr6D 95.385 65 2 1 1 64 463191707 463191771 5.520000e-18 102.0
34 TraesCS2D01G076000 chr4D 90.217 92 6 3 2814 2903 9339906 9339996 1.970000e-22 117.0
35 TraesCS2D01G076000 chr1D 93.421 76 2 3 1 74 482558639 482558565 3.300000e-20 110.0
36 TraesCS2D01G076000 chr1D 84.722 72 7 2 3010 3077 50285325 50285254 5.600000e-08 69.4
37 TraesCS2D01G076000 chr1D 89.286 56 5 1 3007 3061 349470227 349470172 5.600000e-08 69.4
38 TraesCS2D01G076000 chr5D 94.030 67 4 0 1 67 33697596 33697530 5.520000e-18 102.0
39 TraesCS2D01G076000 chr7B 88.235 85 7 3 2814 2895 615676347 615676263 7.140000e-17 99.0
40 TraesCS2D01G076000 chr3D 93.750 64 4 0 1 64 126970299 126970362 2.570000e-16 97.1
41 TraesCS2D01G076000 chr3D 93.750 48 3 0 3007 3054 554127138 554127185 4.330000e-09 73.1
42 TraesCS2D01G076000 chr7A 92.727 55 4 0 3007 3061 48298129 48298075 2.590000e-11 80.5
43 TraesCS2D01G076000 chr7A 86.364 66 6 3 3008 3071 139607547 139607611 5.600000e-08 69.4
44 TraesCS2D01G076000 chr3A 89.831 59 2 4 2830 2888 728351536 728351482 4.330000e-09 73.1
45 TraesCS2D01G076000 chr7D 92.157 51 3 1 3007 3056 184580552 184580602 1.560000e-08 71.3
46 TraesCS2D01G076000 chr5B 88.333 60 6 1 2847 2906 562360783 562360725 1.560000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G076000 chr2D 32519360 32522489 3129 True 1499.625000 5781 95.348000 1 3130 4 chr2D.!!$R3 3129
1 TraesCS2D01G076000 chr2D 32594578 32595804 1226 True 1308.000000 1308 85.919000 871 2121 1 chr2D.!!$R1 1250
2 TraesCS2D01G076000 chr2D 32597959 32599857 1898 False 1143.500000 1993 86.245500 686 2513 2 chr2D.!!$F2 1827
3 TraesCS2D01G076000 chr2D 32557718 32560072 2354 False 943.333333 2037 88.490333 680 3061 3 chr2D.!!$F1 2381
4 TraesCS2D01G076000 chr2A 35629973 35631944 1971 False 1147.500000 1986 87.397500 743 2907 2 chr2A.!!$F2 2164
5 TraesCS2D01G076000 chr2A 35581484 35584598 3114 True 1040.333333 2200 90.889667 690 3066 3 chr2A.!!$R1 2376
6 TraesCS2D01G076000 chrUn 285394203 285396101 1898 True 1143.500000 1993 86.245500 686 2513 2 chrUn.!!$R1 1827
7 TraesCS2D01G076000 chr2B 53517128 53521060 3932 True 968.000000 1825 87.759333 690 3078 3 chr2B.!!$R4 2388
8 TraesCS2D01G076000 chr2B 53577242 53578810 1568 False 931.000000 1762 91.378500 733 2319 2 chr2B.!!$F1 1586
9 TraesCS2D01G076000 chr2B 620215715 620216238 523 True 662.000000 662 89.924000 172 682 1 chr2B.!!$R3 510
10 TraesCS2D01G076000 chr3B 48879774 48880298 524 True 658.000000 658 89.734000 172 682 1 chr3B.!!$R1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
681 682 0.030369 CCCGCGTTCGCTTCTAGTAT 59.970 55.000 14.92 0.0 0.00 2.12 F
696 697 0.034059 AGTATGATACGCTGCCTGCC 59.966 55.000 0.00 0.0 38.78 4.85 F
1259 1284 1.371558 GCTGGACGACCTTCACCTT 59.628 57.895 5.33 0.0 37.04 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 1527 0.725117 GAAGTAAACATCGCCGGTGG 59.275 55.000 16.49 1.91 0.0 4.61 R
1919 1954 1.302192 GTTCAGCGCCACCCAGTAA 60.302 57.895 2.29 0.00 0.0 2.24 R
2749 5369 1.947456 ACGGGTTTCAAGCTCAAGAAC 59.053 47.619 0.00 0.00 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 5.757850 AAAAACCACAAAAACACTTTGCA 57.242 30.435 0.00 0.00 32.93 4.08
50 51 5.757850 AAAACCACAAAAACACTTTGCAA 57.242 30.435 0.00 0.00 32.93 4.08
51 52 5.757850 AAACCACAAAAACACTTTGCAAA 57.242 30.435 12.14 12.14 32.93 3.68
52 53 4.740741 ACCACAAAAACACTTTGCAAAC 57.259 36.364 8.05 0.00 32.93 2.93
53 54 4.130118 ACCACAAAAACACTTTGCAAACA 58.870 34.783 8.05 0.00 32.93 2.83
54 55 4.576463 ACCACAAAAACACTTTGCAAACAA 59.424 33.333 8.05 0.00 32.93 2.83
55 56 5.066505 ACCACAAAAACACTTTGCAAACAAA 59.933 32.000 8.05 0.00 43.45 2.83
56 57 5.397828 CCACAAAAACACTTTGCAAACAAAC 59.602 36.000 8.05 0.00 40.84 2.93
57 58 5.113233 CACAAAAACACTTTGCAAACAAACG 59.887 36.000 8.05 0.37 40.84 3.60
58 59 3.447752 AAACACTTTGCAAACAAACGC 57.552 38.095 8.05 0.00 40.84 4.84
59 60 2.071688 ACACTTTGCAAACAAACGCA 57.928 40.000 8.05 0.00 40.84 5.24
60 61 1.724082 ACACTTTGCAAACAAACGCAC 59.276 42.857 8.05 0.00 40.84 5.34
61 62 1.060409 CACTTTGCAAACAAACGCACC 59.940 47.619 8.05 0.00 40.84 5.01
62 63 0.649993 CTTTGCAAACAAACGCACCC 59.350 50.000 8.05 0.00 40.84 4.61
63 64 0.247736 TTTGCAAACAAACGCACCCT 59.752 45.000 8.05 0.00 40.84 4.34
64 65 1.103803 TTGCAAACAAACGCACCCTA 58.896 45.000 0.00 0.00 38.00 3.53
65 66 1.103803 TGCAAACAAACGCACCCTAA 58.896 45.000 0.00 0.00 31.95 2.69
66 67 1.476891 TGCAAACAAACGCACCCTAAA 59.523 42.857 0.00 0.00 31.95 1.85
67 68 2.101582 TGCAAACAAACGCACCCTAAAT 59.898 40.909 0.00 0.00 31.95 1.40
68 69 3.127589 GCAAACAAACGCACCCTAAATT 58.872 40.909 0.00 0.00 0.00 1.82
69 70 3.059935 GCAAACAAACGCACCCTAAATTG 60.060 43.478 0.00 0.00 0.00 2.32
70 71 4.116238 CAAACAAACGCACCCTAAATTGT 58.884 39.130 0.00 0.00 32.78 2.71
71 72 4.394439 AACAAACGCACCCTAAATTGTT 57.606 36.364 0.00 0.00 36.48 2.83
72 73 3.712187 ACAAACGCACCCTAAATTGTTG 58.288 40.909 0.00 0.00 0.00 3.33
73 74 3.131400 ACAAACGCACCCTAAATTGTTGT 59.869 39.130 0.00 0.00 0.00 3.32
74 75 4.116238 CAAACGCACCCTAAATTGTTGTT 58.884 39.130 0.00 0.00 0.00 2.83
75 76 3.363341 ACGCACCCTAAATTGTTGTTG 57.637 42.857 0.00 0.00 0.00 3.33
76 77 2.952978 ACGCACCCTAAATTGTTGTTGA 59.047 40.909 0.00 0.00 0.00 3.18
77 78 3.572255 ACGCACCCTAAATTGTTGTTGAT 59.428 39.130 0.00 0.00 0.00 2.57
78 79 3.919804 CGCACCCTAAATTGTTGTTGATG 59.080 43.478 0.00 0.00 0.00 3.07
79 80 4.558496 CGCACCCTAAATTGTTGTTGATGT 60.558 41.667 0.00 0.00 0.00 3.06
80 81 5.296748 GCACCCTAAATTGTTGTTGATGTT 58.703 37.500 0.00 0.00 0.00 2.71
81 82 6.451393 GCACCCTAAATTGTTGTTGATGTTA 58.549 36.000 0.00 0.00 0.00 2.41
82 83 6.364976 GCACCCTAAATTGTTGTTGATGTTAC 59.635 38.462 0.00 0.00 0.00 2.50
83 84 7.657336 CACCCTAAATTGTTGTTGATGTTACT 58.343 34.615 0.00 0.00 0.00 2.24
84 85 8.788806 CACCCTAAATTGTTGTTGATGTTACTA 58.211 33.333 0.00 0.00 0.00 1.82
85 86 9.528489 ACCCTAAATTGTTGTTGATGTTACTAT 57.472 29.630 0.00 0.00 0.00 2.12
94 95 9.952030 TGTTGTTGATGTTACTATAATCTTGGA 57.048 29.630 0.00 0.00 0.00 3.53
99 100 8.662781 TGATGTTACTATAATCTTGGAAGTGC 57.337 34.615 0.00 0.00 0.00 4.40
100 101 8.264347 TGATGTTACTATAATCTTGGAAGTGCA 58.736 33.333 0.00 0.00 0.00 4.57
101 102 9.277783 GATGTTACTATAATCTTGGAAGTGCAT 57.722 33.333 0.00 0.00 0.00 3.96
103 104 9.764363 TGTTACTATAATCTTGGAAGTGCATAG 57.236 33.333 0.00 0.00 0.00 2.23
104 105 9.765795 GTTACTATAATCTTGGAAGTGCATAGT 57.234 33.333 0.00 0.00 33.34 2.12
105 106 9.764363 TTACTATAATCTTGGAAGTGCATAGTG 57.236 33.333 0.00 0.00 32.26 2.74
106 107 6.708054 ACTATAATCTTGGAAGTGCATAGTGC 59.292 38.462 0.00 0.00 45.29 4.40
107 108 3.641434 ATCTTGGAAGTGCATAGTGCT 57.359 42.857 3.41 0.00 45.31 4.40
108 109 4.760530 ATCTTGGAAGTGCATAGTGCTA 57.239 40.909 3.41 0.00 45.31 3.49
109 110 4.551702 TCTTGGAAGTGCATAGTGCTAA 57.448 40.909 3.41 0.00 45.31 3.09
110 111 5.102953 TCTTGGAAGTGCATAGTGCTAAT 57.897 39.130 3.41 0.00 45.31 1.73
111 112 5.500234 TCTTGGAAGTGCATAGTGCTAATT 58.500 37.500 3.41 0.00 45.31 1.40
112 113 6.649155 TCTTGGAAGTGCATAGTGCTAATTA 58.351 36.000 3.41 0.00 45.31 1.40
113 114 7.282585 TCTTGGAAGTGCATAGTGCTAATTAT 58.717 34.615 3.41 0.00 45.31 1.28
114 115 7.775093 TCTTGGAAGTGCATAGTGCTAATTATT 59.225 33.333 3.41 0.00 45.31 1.40
115 116 8.972458 TTGGAAGTGCATAGTGCTAATTATTA 57.028 30.769 3.41 0.00 45.31 0.98
116 117 8.378172 TGGAAGTGCATAGTGCTAATTATTAC 57.622 34.615 3.41 0.00 45.31 1.89
117 118 7.990314 TGGAAGTGCATAGTGCTAATTATTACA 59.010 33.333 3.41 0.00 45.31 2.41
118 119 8.836413 GGAAGTGCATAGTGCTAATTATTACAA 58.164 33.333 3.41 0.00 45.31 2.41
121 122 9.559732 AGTGCATAGTGCTAATTATTACAATGA 57.440 29.630 3.41 0.00 45.31 2.57
128 129 9.243105 AGTGCTAATTATTACAATGAAAGGTGT 57.757 29.630 0.00 0.00 0.00 4.16
129 130 9.855021 GTGCTAATTATTACAATGAAAGGTGTT 57.145 29.630 0.00 0.00 0.00 3.32
153 154 4.789012 TTTTTGCCATCTGCCTAAGAAG 57.211 40.909 0.00 0.00 38.79 2.85
154 155 3.719268 TTTGCCATCTGCCTAAGAAGA 57.281 42.857 0.00 0.00 38.79 2.87
155 156 2.996249 TGCCATCTGCCTAAGAAGAG 57.004 50.000 0.00 0.00 38.79 2.85
156 157 2.470990 TGCCATCTGCCTAAGAAGAGA 58.529 47.619 0.00 0.00 38.79 3.10
157 158 2.840038 TGCCATCTGCCTAAGAAGAGAA 59.160 45.455 0.00 0.00 38.79 2.87
158 159 3.457380 TGCCATCTGCCTAAGAAGAGAAT 59.543 43.478 0.00 0.00 38.79 2.40
159 160 3.814283 GCCATCTGCCTAAGAAGAGAATG 59.186 47.826 0.00 0.00 38.79 2.67
160 161 4.685575 GCCATCTGCCTAAGAAGAGAATGT 60.686 45.833 0.00 0.00 38.79 2.71
161 162 5.055812 CCATCTGCCTAAGAAGAGAATGTC 58.944 45.833 0.00 0.00 38.79 3.06
162 163 4.744795 TCTGCCTAAGAAGAGAATGTCC 57.255 45.455 0.00 0.00 29.54 4.02
163 164 4.096681 TCTGCCTAAGAAGAGAATGTCCA 58.903 43.478 0.00 0.00 29.54 4.02
164 165 4.081420 TCTGCCTAAGAAGAGAATGTCCAC 60.081 45.833 0.00 0.00 29.54 4.02
165 166 3.840666 TGCCTAAGAAGAGAATGTCCACT 59.159 43.478 0.00 0.00 0.00 4.00
166 167 4.287067 TGCCTAAGAAGAGAATGTCCACTT 59.713 41.667 0.00 0.00 0.00 3.16
167 168 5.483937 TGCCTAAGAAGAGAATGTCCACTTA 59.516 40.000 0.00 0.00 0.00 2.24
168 169 6.045955 GCCTAAGAAGAGAATGTCCACTTAG 58.954 44.000 0.00 0.00 39.09 2.18
169 170 6.127310 GCCTAAGAAGAGAATGTCCACTTAGA 60.127 42.308 16.42 0.00 40.33 2.10
170 171 7.418483 GCCTAAGAAGAGAATGTCCACTTAGAT 60.418 40.741 16.42 0.00 40.33 1.98
227 228 3.284617 GGTTGTTACCAAGGTTGTCTGT 58.715 45.455 0.00 0.00 44.36 3.41
240 241 7.390440 CCAAGGTTGTCTGTATCTTAATCAACA 59.610 37.037 0.00 0.00 36.46 3.33
269 270 5.449999 CCTGTCCAAAAGGTGTTGTTTCTAC 60.450 44.000 0.00 0.00 0.00 2.59
272 273 4.942483 TCCAAAAGGTGTTGTTTCTACGAA 59.058 37.500 0.00 0.00 0.00 3.85
273 274 5.065474 TCCAAAAGGTGTTGTTTCTACGAAG 59.935 40.000 0.00 0.00 0.00 3.79
274 275 5.065474 CCAAAAGGTGTTGTTTCTACGAAGA 59.935 40.000 0.00 0.00 0.00 2.87
275 276 5.986004 AAAGGTGTTGTTTCTACGAAGAG 57.014 39.130 0.00 0.00 31.96 2.85
276 277 3.391049 AGGTGTTGTTTCTACGAAGAGC 58.609 45.455 0.00 0.00 31.96 4.09
278 279 2.155155 GTGTTGTTTCTACGAAGAGCGG 59.845 50.000 0.00 0.00 46.49 5.52
279 280 2.223876 TGTTGTTTCTACGAAGAGCGGT 60.224 45.455 0.00 0.00 46.49 5.68
280 281 2.060326 TGTTTCTACGAAGAGCGGTG 57.940 50.000 0.00 0.00 46.49 4.94
281 282 1.610038 TGTTTCTACGAAGAGCGGTGA 59.390 47.619 0.00 0.00 46.49 4.02
282 283 1.984297 GTTTCTACGAAGAGCGGTGAC 59.016 52.381 0.00 0.00 46.49 3.67
283 284 1.241165 TTCTACGAAGAGCGGTGACA 58.759 50.000 0.00 0.00 46.49 3.58
284 285 1.241165 TCTACGAAGAGCGGTGACAA 58.759 50.000 0.00 0.00 46.49 3.18
285 286 1.610038 TCTACGAAGAGCGGTGACAAA 59.390 47.619 0.00 0.00 46.49 2.83
286 287 2.230508 TCTACGAAGAGCGGTGACAAAT 59.769 45.455 0.00 0.00 46.49 2.32
287 288 1.148310 ACGAAGAGCGGTGACAAATG 58.852 50.000 0.00 0.00 46.49 2.32
288 289 0.443869 CGAAGAGCGGTGACAAATGG 59.556 55.000 0.00 0.00 36.03 3.16
289 290 1.808411 GAAGAGCGGTGACAAATGGA 58.192 50.000 0.00 0.00 0.00 3.41
290 291 2.359900 GAAGAGCGGTGACAAATGGAT 58.640 47.619 0.00 0.00 0.00 3.41
291 292 2.496899 AGAGCGGTGACAAATGGATT 57.503 45.000 0.00 0.00 0.00 3.01
292 293 2.086869 AGAGCGGTGACAAATGGATTG 58.913 47.619 0.00 0.00 44.95 2.67
293 294 0.527565 AGCGGTGACAAATGGATTGC 59.472 50.000 0.00 0.00 43.13 3.56
294 295 0.798009 GCGGTGACAAATGGATTGCG 60.798 55.000 0.00 0.00 43.13 4.85
295 296 0.798009 CGGTGACAAATGGATTGCGC 60.798 55.000 0.00 0.00 43.13 6.09
296 297 0.527565 GGTGACAAATGGATTGCGCT 59.472 50.000 9.73 0.00 43.13 5.92
297 298 1.067635 GGTGACAAATGGATTGCGCTT 60.068 47.619 9.73 0.00 43.13 4.68
298 299 2.253603 GTGACAAATGGATTGCGCTTC 58.746 47.619 9.73 5.59 43.13 3.86
299 300 2.095059 GTGACAAATGGATTGCGCTTCT 60.095 45.455 9.73 0.00 43.13 2.85
300 301 2.557924 TGACAAATGGATTGCGCTTCTT 59.442 40.909 9.73 0.00 43.13 2.52
301 302 3.005684 TGACAAATGGATTGCGCTTCTTT 59.994 39.130 9.73 0.95 43.13 2.52
302 303 3.989817 GACAAATGGATTGCGCTTCTTTT 59.010 39.130 9.73 7.57 43.13 2.27
303 304 4.379652 ACAAATGGATTGCGCTTCTTTTT 58.620 34.783 9.73 7.25 43.13 1.94
304 305 5.537188 ACAAATGGATTGCGCTTCTTTTTA 58.463 33.333 9.73 0.00 43.13 1.52
305 306 5.634859 ACAAATGGATTGCGCTTCTTTTTAG 59.365 36.000 9.73 7.56 43.13 1.85
306 307 5.643379 AATGGATTGCGCTTCTTTTTAGA 57.357 34.783 9.73 0.00 0.00 2.10
307 308 5.841957 ATGGATTGCGCTTCTTTTTAGAT 57.158 34.783 9.73 0.00 0.00 1.98
308 309 6.942532 ATGGATTGCGCTTCTTTTTAGATA 57.057 33.333 9.73 0.00 0.00 1.98
309 310 6.751514 TGGATTGCGCTTCTTTTTAGATAA 57.248 33.333 9.73 0.00 0.00 1.75
310 311 7.151999 TGGATTGCGCTTCTTTTTAGATAAA 57.848 32.000 9.73 0.00 0.00 1.40
311 312 7.598278 TGGATTGCGCTTCTTTTTAGATAAAA 58.402 30.769 9.73 0.00 33.71 1.52
312 313 7.754924 TGGATTGCGCTTCTTTTTAGATAAAAG 59.245 33.333 9.73 0.00 36.62 2.27
313 314 7.220875 GGATTGCGCTTCTTTTTAGATAAAAGG 59.779 37.037 9.73 1.83 37.72 3.11
314 315 5.949735 TGCGCTTCTTTTTAGATAAAAGGG 58.050 37.500 9.73 0.00 37.72 3.95
315 316 5.475564 TGCGCTTCTTTTTAGATAAAAGGGT 59.524 36.000 9.73 0.00 37.72 4.34
316 317 6.655848 TGCGCTTCTTTTTAGATAAAAGGGTA 59.344 34.615 9.73 0.00 37.72 3.69
317 318 7.338449 TGCGCTTCTTTTTAGATAAAAGGGTAT 59.662 33.333 9.73 0.00 37.72 2.73
318 319 8.833493 GCGCTTCTTTTTAGATAAAAGGGTATA 58.167 33.333 0.00 0.00 37.72 1.47
369 370 3.685836 TCATACGTGACTCATGGTACG 57.314 47.619 0.00 1.78 41.86 3.67
370 371 3.272581 TCATACGTGACTCATGGTACGA 58.727 45.455 15.19 0.00 39.61 3.43
371 372 3.881089 TCATACGTGACTCATGGTACGAT 59.119 43.478 15.19 0.00 39.61 3.73
372 373 4.337274 TCATACGTGACTCATGGTACGATT 59.663 41.667 15.19 3.71 39.61 3.34
373 374 3.587797 ACGTGACTCATGGTACGATTT 57.412 42.857 15.19 0.00 39.61 2.17
374 375 4.707030 ACGTGACTCATGGTACGATTTA 57.293 40.909 15.19 0.00 39.61 1.40
375 376 5.258456 ACGTGACTCATGGTACGATTTAT 57.742 39.130 15.19 0.00 39.61 1.40
376 377 6.381481 ACGTGACTCATGGTACGATTTATA 57.619 37.500 15.19 0.00 39.61 0.98
377 378 6.798482 ACGTGACTCATGGTACGATTTATAA 58.202 36.000 15.19 0.00 39.61 0.98
378 379 6.916387 ACGTGACTCATGGTACGATTTATAAG 59.084 38.462 15.19 0.00 39.61 1.73
379 380 6.916387 CGTGACTCATGGTACGATTTATAAGT 59.084 38.462 0.00 0.00 38.72 2.24
380 381 7.434307 CGTGACTCATGGTACGATTTATAAGTT 59.566 37.037 0.00 0.00 38.72 2.66
381 382 9.095065 GTGACTCATGGTACGATTTATAAGTTT 57.905 33.333 0.00 0.00 0.00 2.66
397 398 8.940768 TTATAAGTTTATTTTTGCCATCTGCC 57.059 30.769 0.00 0.00 40.16 4.85
398 399 5.488262 AAGTTTATTTTTGCCATCTGCCT 57.512 34.783 0.00 0.00 40.16 4.75
399 400 6.603940 AAGTTTATTTTTGCCATCTGCCTA 57.396 33.333 0.00 0.00 40.16 3.93
400 401 6.603940 AGTTTATTTTTGCCATCTGCCTAA 57.396 33.333 0.00 0.00 40.16 2.69
401 402 6.633856 AGTTTATTTTTGCCATCTGCCTAAG 58.366 36.000 0.00 0.00 40.16 2.18
402 403 6.437162 AGTTTATTTTTGCCATCTGCCTAAGA 59.563 34.615 0.00 0.00 40.16 2.10
403 404 6.849085 TTATTTTTGCCATCTGCCTAAGAA 57.151 33.333 0.00 0.00 38.79 2.52
404 405 4.789012 TTTTTGCCATCTGCCTAAGAAG 57.211 40.909 0.00 0.00 38.79 2.85
405 406 3.719268 TTTGCCATCTGCCTAAGAAGA 57.281 42.857 0.00 0.00 38.79 2.87
406 407 2.996249 TGCCATCTGCCTAAGAAGAG 57.004 50.000 0.00 0.00 38.79 2.85
407 408 2.470990 TGCCATCTGCCTAAGAAGAGA 58.529 47.619 0.00 0.00 38.79 3.10
408 409 2.840038 TGCCATCTGCCTAAGAAGAGAA 59.160 45.455 0.00 0.00 38.79 2.87
409 410 3.457380 TGCCATCTGCCTAAGAAGAGAAT 59.543 43.478 0.00 0.00 38.79 2.40
410 411 3.814283 GCCATCTGCCTAAGAAGAGAATG 59.186 47.826 0.00 0.00 38.79 2.67
411 412 4.685575 GCCATCTGCCTAAGAAGAGAATGT 60.686 45.833 0.00 0.00 38.79 2.71
412 413 5.055812 CCATCTGCCTAAGAAGAGAATGTC 58.944 45.833 0.00 0.00 38.79 3.06
413 414 4.744795 TCTGCCTAAGAAGAGAATGTCC 57.255 45.455 0.00 0.00 29.54 4.02
414 415 4.096681 TCTGCCTAAGAAGAGAATGTCCA 58.903 43.478 0.00 0.00 29.54 4.02
415 416 4.081420 TCTGCCTAAGAAGAGAATGTCCAC 60.081 45.833 0.00 0.00 29.54 4.02
416 417 3.840666 TGCCTAAGAAGAGAATGTCCACT 59.159 43.478 0.00 0.00 0.00 4.00
417 418 4.287067 TGCCTAAGAAGAGAATGTCCACTT 59.713 41.667 0.00 0.00 0.00 3.16
418 419 5.483937 TGCCTAAGAAGAGAATGTCCACTTA 59.516 40.000 0.00 0.00 0.00 2.24
419 420 6.045955 GCCTAAGAAGAGAATGTCCACTTAG 58.954 44.000 0.00 0.00 39.09 2.18
420 421 6.127310 GCCTAAGAAGAGAATGTCCACTTAGA 60.127 42.308 16.42 0.00 40.33 2.10
421 422 7.418483 GCCTAAGAAGAGAATGTCCACTTAGAT 60.418 40.741 16.42 0.00 40.33 1.98
422 423 7.925483 CCTAAGAAGAGAATGTCCACTTAGATG 59.075 40.741 16.42 4.34 40.33 2.90
423 424 6.865834 AGAAGAGAATGTCCACTTAGATGT 57.134 37.500 0.00 0.00 0.00 3.06
424 425 7.251321 AGAAGAGAATGTCCACTTAGATGTT 57.749 36.000 0.00 0.00 0.00 2.71
425 426 8.367660 AGAAGAGAATGTCCACTTAGATGTTA 57.632 34.615 0.00 0.00 0.00 2.41
426 427 8.474025 AGAAGAGAATGTCCACTTAGATGTTAG 58.526 37.037 0.00 0.00 0.00 2.34
427 428 7.726033 AGAGAATGTCCACTTAGATGTTAGT 57.274 36.000 0.00 0.00 0.00 2.24
428 429 8.824756 AGAGAATGTCCACTTAGATGTTAGTA 57.175 34.615 0.00 0.00 0.00 1.82
429 430 9.427821 AGAGAATGTCCACTTAGATGTTAGTAT 57.572 33.333 0.00 0.00 0.00 2.12
430 431 9.469807 GAGAATGTCCACTTAGATGTTAGTATG 57.530 37.037 0.00 0.00 0.00 2.39
431 432 8.982723 AGAATGTCCACTTAGATGTTAGTATGT 58.017 33.333 0.00 0.00 0.00 2.29
432 433 9.601217 GAATGTCCACTTAGATGTTAGTATGTT 57.399 33.333 0.00 0.00 0.00 2.71
435 436 8.692710 TGTCCACTTAGATGTTAGTATGTTAGG 58.307 37.037 0.00 0.00 0.00 2.69
436 437 8.910944 GTCCACTTAGATGTTAGTATGTTAGGA 58.089 37.037 0.00 0.00 0.00 2.94
437 438 9.656323 TCCACTTAGATGTTAGTATGTTAGGAT 57.344 33.333 0.00 0.00 0.00 3.24
438 439 9.698309 CCACTTAGATGTTAGTATGTTAGGATG 57.302 37.037 0.00 0.00 0.00 3.51
439 440 9.197694 CACTTAGATGTTAGTATGTTAGGATGC 57.802 37.037 0.00 0.00 0.00 3.91
440 441 8.924303 ACTTAGATGTTAGTATGTTAGGATGCA 58.076 33.333 0.00 0.00 0.00 3.96
441 442 9.935241 CTTAGATGTTAGTATGTTAGGATGCAT 57.065 33.333 0.00 0.00 0.00 3.96
442 443 9.929180 TTAGATGTTAGTATGTTAGGATGCATC 57.071 33.333 18.81 18.81 0.00 3.91
443 444 8.200024 AGATGTTAGTATGTTAGGATGCATCT 57.800 34.615 25.28 14.04 35.81 2.90
444 445 8.310382 AGATGTTAGTATGTTAGGATGCATCTC 58.690 37.037 25.28 15.54 35.79 2.75
445 446 7.603180 TGTTAGTATGTTAGGATGCATCTCT 57.397 36.000 25.28 21.12 0.00 3.10
446 447 7.436933 TGTTAGTATGTTAGGATGCATCTCTG 58.563 38.462 25.28 0.00 0.00 3.35
460 461 3.515630 CATCTCTGCACGTATCTGTTGT 58.484 45.455 0.00 0.00 0.00 3.32
461 462 3.217599 TCTCTGCACGTATCTGTTGTC 57.782 47.619 0.00 0.00 0.00 3.18
462 463 2.820197 TCTCTGCACGTATCTGTTGTCT 59.180 45.455 0.00 0.00 0.00 3.41
463 464 2.919859 CTCTGCACGTATCTGTTGTCTG 59.080 50.000 0.00 0.00 0.00 3.51
464 465 2.296190 TCTGCACGTATCTGTTGTCTGT 59.704 45.455 0.00 0.00 0.00 3.41
465 466 3.059884 CTGCACGTATCTGTTGTCTGTT 58.940 45.455 0.00 0.00 0.00 3.16
466 467 2.799978 TGCACGTATCTGTTGTCTGTTG 59.200 45.455 0.00 0.00 0.00 3.33
467 468 3.057019 GCACGTATCTGTTGTCTGTTGA 58.943 45.455 0.00 0.00 0.00 3.18
468 469 3.121944 GCACGTATCTGTTGTCTGTTGAG 59.878 47.826 0.00 0.00 0.00 3.02
469 470 3.675225 CACGTATCTGTTGTCTGTTGAGG 59.325 47.826 0.00 0.00 0.00 3.86
470 471 3.572682 ACGTATCTGTTGTCTGTTGAGGA 59.427 43.478 0.00 0.00 0.00 3.71
471 472 4.038763 ACGTATCTGTTGTCTGTTGAGGAA 59.961 41.667 0.00 0.00 0.00 3.36
472 473 5.171476 CGTATCTGTTGTCTGTTGAGGAAT 58.829 41.667 0.00 0.00 0.00 3.01
473 474 5.062683 CGTATCTGTTGTCTGTTGAGGAATG 59.937 44.000 0.00 0.00 0.00 2.67
474 475 4.687901 TCTGTTGTCTGTTGAGGAATGA 57.312 40.909 0.00 0.00 0.00 2.57
475 476 4.380531 TCTGTTGTCTGTTGAGGAATGAC 58.619 43.478 0.00 0.00 0.00 3.06
476 477 3.476552 TGTTGTCTGTTGAGGAATGACC 58.523 45.455 0.00 0.00 39.35 4.02
477 478 2.455674 TGTCTGTTGAGGAATGACCG 57.544 50.000 0.00 0.00 44.74 4.79
478 479 1.967779 TGTCTGTTGAGGAATGACCGA 59.032 47.619 0.00 0.00 44.74 4.69
479 480 2.029020 TGTCTGTTGAGGAATGACCGAG 60.029 50.000 0.00 0.00 44.74 4.63
480 481 1.550524 TCTGTTGAGGAATGACCGAGG 59.449 52.381 0.00 0.00 44.74 4.63
481 482 1.550524 CTGTTGAGGAATGACCGAGGA 59.449 52.381 0.00 0.00 44.74 3.71
482 483 1.550524 TGTTGAGGAATGACCGAGGAG 59.449 52.381 0.00 0.00 44.74 3.69
483 484 1.550976 GTTGAGGAATGACCGAGGAGT 59.449 52.381 0.00 0.00 44.74 3.85
484 485 1.475403 TGAGGAATGACCGAGGAGTC 58.525 55.000 0.00 0.00 44.74 3.36
485 486 1.006043 TGAGGAATGACCGAGGAGTCT 59.994 52.381 0.00 0.00 44.74 3.24
486 487 1.407258 GAGGAATGACCGAGGAGTCTG 59.593 57.143 0.00 0.00 44.74 3.51
487 488 1.187087 GGAATGACCGAGGAGTCTGT 58.813 55.000 0.00 0.00 37.66 3.41
488 489 1.134965 GGAATGACCGAGGAGTCTGTG 60.135 57.143 0.00 0.00 37.66 3.66
489 490 1.546476 GAATGACCGAGGAGTCTGTGT 59.454 52.381 0.00 0.00 37.66 3.72
490 491 1.178276 ATGACCGAGGAGTCTGTGTC 58.822 55.000 0.00 0.00 37.66 3.67
491 492 0.179001 TGACCGAGGAGTCTGTGTCA 60.179 55.000 0.00 0.00 37.66 3.58
492 493 0.523966 GACCGAGGAGTCTGTGTCAG 59.476 60.000 0.00 0.00 33.79 3.51
493 494 0.110678 ACCGAGGAGTCTGTGTCAGA 59.889 55.000 0.00 0.00 38.25 3.27
494 495 0.808125 CCGAGGAGTCTGTGTCAGAG 59.192 60.000 0.00 0.00 41.46 3.35
495 496 0.170116 CGAGGAGTCTGTGTCAGAGC 59.830 60.000 0.00 0.00 41.46 4.09
496 497 1.252175 GAGGAGTCTGTGTCAGAGCA 58.748 55.000 0.00 0.00 41.46 4.26
497 498 1.615883 GAGGAGTCTGTGTCAGAGCAA 59.384 52.381 0.00 0.00 41.46 3.91
498 499 2.036475 GAGGAGTCTGTGTCAGAGCAAA 59.964 50.000 0.00 0.00 41.46 3.68
499 500 2.139118 GGAGTCTGTGTCAGAGCAAAC 58.861 52.381 0.00 0.00 41.46 2.93
500 501 2.483714 GGAGTCTGTGTCAGAGCAAACA 60.484 50.000 0.00 0.00 41.46 2.83
501 502 3.198068 GAGTCTGTGTCAGAGCAAACAA 58.802 45.455 0.00 0.00 41.46 2.83
502 503 3.609853 AGTCTGTGTCAGAGCAAACAAA 58.390 40.909 0.00 0.00 41.46 2.83
503 504 3.624861 AGTCTGTGTCAGAGCAAACAAAG 59.375 43.478 0.00 0.00 41.46 2.77
504 505 2.355756 TCTGTGTCAGAGCAAACAAAGC 59.644 45.455 0.00 0.00 35.39 3.51
505 506 2.357009 CTGTGTCAGAGCAAACAAAGCT 59.643 45.455 0.00 0.00 46.82 3.74
506 507 2.754552 TGTGTCAGAGCAAACAAAGCTT 59.245 40.909 0.00 0.00 43.58 3.74
507 508 3.111098 GTGTCAGAGCAAACAAAGCTTG 58.889 45.455 0.00 0.00 43.58 4.01
516 517 5.717038 GCAAACAAAGCTTGCTTTAAGAA 57.283 34.783 18.52 0.00 44.66 2.52
517 518 6.105657 GCAAACAAAGCTTGCTTTAAGAAA 57.894 33.333 18.52 0.00 44.66 2.52
518 519 6.541969 GCAAACAAAGCTTGCTTTAAGAAAA 58.458 32.000 18.52 0.00 44.66 2.29
519 520 7.188834 GCAAACAAAGCTTGCTTTAAGAAAAT 58.811 30.769 18.52 1.45 44.66 1.82
520 521 7.164662 GCAAACAAAGCTTGCTTTAAGAAAATG 59.835 33.333 18.52 8.62 44.66 2.32
521 522 6.849588 ACAAAGCTTGCTTTAAGAAAATGG 57.150 33.333 18.52 7.32 38.76 3.16
522 523 5.759763 ACAAAGCTTGCTTTAAGAAAATGGG 59.240 36.000 18.52 6.71 38.76 4.00
523 524 5.551305 AAGCTTGCTTTAAGAAAATGGGT 57.449 34.783 0.00 0.00 38.76 4.51
524 525 4.886579 AGCTTGCTTTAAGAAAATGGGTG 58.113 39.130 0.00 0.00 38.76 4.61
525 526 3.996363 GCTTGCTTTAAGAAAATGGGTGG 59.004 43.478 0.00 0.00 38.76 4.61
526 527 4.568956 CTTGCTTTAAGAAAATGGGTGGG 58.431 43.478 0.00 0.00 38.76 4.61
527 528 3.850752 TGCTTTAAGAAAATGGGTGGGA 58.149 40.909 0.00 0.00 0.00 4.37
528 529 4.424842 TGCTTTAAGAAAATGGGTGGGAT 58.575 39.130 0.00 0.00 0.00 3.85
529 530 4.222588 TGCTTTAAGAAAATGGGTGGGATG 59.777 41.667 0.00 0.00 0.00 3.51
530 531 4.222810 GCTTTAAGAAAATGGGTGGGATGT 59.777 41.667 0.00 0.00 0.00 3.06
531 532 5.723295 CTTTAAGAAAATGGGTGGGATGTG 58.277 41.667 0.00 0.00 0.00 3.21
532 533 1.560505 AGAAAATGGGTGGGATGTGC 58.439 50.000 0.00 0.00 0.00 4.57
533 534 1.077663 AGAAAATGGGTGGGATGTGCT 59.922 47.619 0.00 0.00 0.00 4.40
534 535 1.478105 GAAAATGGGTGGGATGTGCTC 59.522 52.381 0.00 0.00 0.00 4.26
535 536 0.706433 AAATGGGTGGGATGTGCTCT 59.294 50.000 0.00 0.00 0.00 4.09
536 537 0.257039 AATGGGTGGGATGTGCTCTC 59.743 55.000 0.00 0.00 0.00 3.20
537 538 1.639635 ATGGGTGGGATGTGCTCTCC 61.640 60.000 0.00 0.00 0.00 3.71
538 539 2.300967 GGGTGGGATGTGCTCTCCA 61.301 63.158 6.60 0.00 34.24 3.86
539 540 1.639635 GGGTGGGATGTGCTCTCCAT 61.640 60.000 6.60 0.00 34.24 3.41
540 541 0.179034 GGTGGGATGTGCTCTCCATC 60.179 60.000 6.60 0.00 38.37 3.51
547 548 4.255833 GATGTGCTCTCCATCCTTCTAG 57.744 50.000 0.00 0.00 34.02 2.43
548 549 3.388552 TGTGCTCTCCATCCTTCTAGA 57.611 47.619 0.00 0.00 0.00 2.43
549 550 3.713003 TGTGCTCTCCATCCTTCTAGAA 58.287 45.455 4.81 4.81 0.00 2.10
550 551 3.703556 TGTGCTCTCCATCCTTCTAGAAG 59.296 47.826 23.31 23.31 38.14 2.85
551 552 3.704061 GTGCTCTCCATCCTTCTAGAAGT 59.296 47.826 26.83 10.32 36.72 3.01
552 553 4.161377 GTGCTCTCCATCCTTCTAGAAGTT 59.839 45.833 26.83 13.96 36.72 2.66
553 554 4.780021 TGCTCTCCATCCTTCTAGAAGTTT 59.220 41.667 26.83 13.64 36.72 2.66
554 555 5.249393 TGCTCTCCATCCTTCTAGAAGTTTT 59.751 40.000 26.83 11.40 36.72 2.43
555 556 5.815222 GCTCTCCATCCTTCTAGAAGTTTTC 59.185 44.000 26.83 6.37 36.72 2.29
556 557 6.575254 GCTCTCCATCCTTCTAGAAGTTTTCA 60.575 42.308 26.83 10.17 36.72 2.69
557 558 7.316393 TCTCCATCCTTCTAGAAGTTTTCAA 57.684 36.000 26.83 10.10 36.72 2.69
558 559 7.390027 TCTCCATCCTTCTAGAAGTTTTCAAG 58.610 38.462 26.83 17.32 36.72 3.02
559 560 7.235606 TCTCCATCCTTCTAGAAGTTTTCAAGA 59.764 37.037 26.83 18.88 36.72 3.02
560 561 7.745717 TCCATCCTTCTAGAAGTTTTCAAGAA 58.254 34.615 26.83 4.84 36.72 2.52
561 562 7.880195 TCCATCCTTCTAGAAGTTTTCAAGAAG 59.120 37.037 26.83 13.80 36.72 2.85
569 570 9.930693 TCTAGAAGTTTTCAAGAAGGAATAGTC 57.069 33.333 0.00 0.00 0.00 2.59
570 571 9.712305 CTAGAAGTTTTCAAGAAGGAATAGTCA 57.288 33.333 0.00 0.00 0.00 3.41
571 572 8.980481 AGAAGTTTTCAAGAAGGAATAGTCAA 57.020 30.769 0.00 0.00 0.00 3.18
572 573 9.408648 AGAAGTTTTCAAGAAGGAATAGTCAAA 57.591 29.630 0.00 0.00 0.00 2.69
575 576 9.579932 AGTTTTCAAGAAGGAATAGTCAAATCT 57.420 29.630 0.00 0.00 0.00 2.40
592 593 9.182214 AGTCAAATCTAAATGTTATCATGTGCT 57.818 29.630 0.00 0.00 34.19 4.40
602 603 8.737168 AATGTTATCATGTGCTATAGTGTTGT 57.263 30.769 0.84 0.00 34.19 3.32
603 604 8.737168 ATGTTATCATGTGCTATAGTGTTGTT 57.263 30.769 0.84 0.00 32.51 2.83
604 605 9.830975 ATGTTATCATGTGCTATAGTGTTGTTA 57.169 29.630 0.84 0.00 32.51 2.41
605 606 9.830975 TGTTATCATGTGCTATAGTGTTGTTAT 57.169 29.630 0.84 0.00 0.00 1.89
619 620 9.695155 ATAGTGTTGTTATAGCCAAATAAAGGT 57.305 29.630 0.00 0.00 0.00 3.50
620 621 8.417273 AGTGTTGTTATAGCCAAATAAAGGTT 57.583 30.769 0.00 0.00 0.00 3.50
621 622 8.520351 AGTGTTGTTATAGCCAAATAAAGGTTC 58.480 33.333 0.00 0.00 0.00 3.62
622 623 7.483691 GTGTTGTTATAGCCAAATAAAGGTTCG 59.516 37.037 0.00 0.00 0.00 3.95
623 624 7.175293 TGTTGTTATAGCCAAATAAAGGTTCGT 59.825 33.333 0.00 0.00 0.00 3.85
624 625 7.690952 TGTTATAGCCAAATAAAGGTTCGTT 57.309 32.000 0.00 0.00 0.00 3.85
625 626 8.113173 TGTTATAGCCAAATAAAGGTTCGTTT 57.887 30.769 0.00 0.00 0.00 3.60
626 627 8.024285 TGTTATAGCCAAATAAAGGTTCGTTTG 58.976 33.333 1.53 0.00 0.00 2.93
627 628 6.827586 ATAGCCAAATAAAGGTTCGTTTGA 57.172 33.333 0.00 0.00 34.38 2.69
628 629 5.121221 AGCCAAATAAAGGTTCGTTTGAG 57.879 39.130 0.00 0.00 34.38 3.02
629 630 4.825085 AGCCAAATAAAGGTTCGTTTGAGA 59.175 37.500 0.00 0.00 34.38 3.27
630 631 5.300792 AGCCAAATAAAGGTTCGTTTGAGAA 59.699 36.000 0.00 0.00 34.38 2.87
631 632 6.015434 AGCCAAATAAAGGTTCGTTTGAGAAT 60.015 34.615 0.00 0.00 34.38 2.40
632 633 6.645003 GCCAAATAAAGGTTCGTTTGAGAATT 59.355 34.615 0.00 0.00 34.38 2.17
633 634 7.170828 GCCAAATAAAGGTTCGTTTGAGAATTT 59.829 33.333 0.00 0.00 34.38 1.82
634 635 9.040939 CCAAATAAAGGTTCGTTTGAGAATTTT 57.959 29.630 0.00 0.00 34.38 1.82
637 638 6.902224 AAAGGTTCGTTTGAGAATTTTTGG 57.098 33.333 0.00 0.00 32.25 3.28
638 639 5.845391 AGGTTCGTTTGAGAATTTTTGGA 57.155 34.783 0.00 0.00 32.25 3.53
639 640 6.405278 AGGTTCGTTTGAGAATTTTTGGAT 57.595 33.333 0.00 0.00 32.25 3.41
640 641 7.519032 AGGTTCGTTTGAGAATTTTTGGATA 57.481 32.000 0.00 0.00 32.25 2.59
641 642 8.122472 AGGTTCGTTTGAGAATTTTTGGATAT 57.878 30.769 0.00 0.00 32.25 1.63
642 643 9.238368 AGGTTCGTTTGAGAATTTTTGGATATA 57.762 29.630 0.00 0.00 32.25 0.86
652 653 8.871686 AGAATTTTTGGATATATTCAAACGGC 57.128 30.769 17.24 8.56 33.29 5.68
653 654 7.647715 AGAATTTTTGGATATATTCAAACGGCG 59.352 33.333 17.24 4.80 33.29 6.46
654 655 3.889196 TTGGATATATTCAAACGGCGC 57.111 42.857 6.90 0.00 0.00 6.53
655 656 1.795872 TGGATATATTCAAACGGCGCG 59.204 47.619 6.90 0.00 0.00 6.86
656 657 1.127951 GGATATATTCAAACGGCGCGG 59.872 52.381 14.03 14.03 0.00 6.46
657 658 0.515564 ATATATTCAAACGGCGCGGC 59.484 50.000 24.49 24.49 0.00 6.53
658 659 0.810426 TATATTCAAACGGCGCGGCA 60.810 50.000 32.60 12.39 0.00 5.69
659 660 1.649390 ATATTCAAACGGCGCGGCAA 61.649 50.000 32.60 18.77 0.00 4.52
660 661 1.853114 TATTCAAACGGCGCGGCAAA 61.853 50.000 32.60 17.13 0.00 3.68
661 662 3.702946 TATTCAAACGGCGCGGCAAAG 62.703 52.381 32.60 18.62 0.00 2.77
675 676 3.723348 AAAGCCCGCGTTCGCTTC 61.723 61.111 20.92 4.27 44.40 3.86
676 677 4.681978 AAGCCCGCGTTCGCTTCT 62.682 61.111 16.67 6.32 41.42 2.85
677 678 2.775032 AAAGCCCGCGTTCGCTTCTA 62.775 55.000 20.92 0.00 44.40 2.10
678 679 3.255379 GCCCGCGTTCGCTTCTAG 61.255 66.667 14.92 0.00 0.00 2.43
679 680 2.181021 CCCGCGTTCGCTTCTAGT 59.819 61.111 14.92 0.00 0.00 2.57
680 681 1.430632 CCCGCGTTCGCTTCTAGTA 59.569 57.895 14.92 0.00 0.00 1.82
681 682 0.030369 CCCGCGTTCGCTTCTAGTAT 59.970 55.000 14.92 0.00 0.00 2.12
682 683 1.121240 CCGCGTTCGCTTCTAGTATG 58.879 55.000 14.92 0.00 0.00 2.39
683 684 1.268386 CCGCGTTCGCTTCTAGTATGA 60.268 52.381 14.92 0.00 0.00 2.15
684 685 2.604855 CCGCGTTCGCTTCTAGTATGAT 60.605 50.000 14.92 0.00 0.00 2.45
685 686 3.364664 CCGCGTTCGCTTCTAGTATGATA 60.365 47.826 14.92 0.00 0.00 2.15
686 687 3.598668 CGCGTTCGCTTCTAGTATGATAC 59.401 47.826 14.92 0.00 0.00 2.24
687 688 3.598668 GCGTTCGCTTCTAGTATGATACG 59.401 47.826 9.99 0.00 0.00 3.06
688 689 3.598668 CGTTCGCTTCTAGTATGATACGC 59.401 47.826 0.00 0.00 0.00 4.42
696 697 0.034059 AGTATGATACGCTGCCTGCC 59.966 55.000 0.00 0.00 38.78 4.85
714 715 1.405121 GCCCTTCGTTTACGTCCATCT 60.405 52.381 0.00 0.00 40.80 2.90
771 773 1.887198 CACCACCTCGTAGAACTGTCT 59.113 52.381 0.00 0.00 37.95 3.41
818 828 2.834549 AGCTCCGAATCTCCTCAAAAGA 59.165 45.455 0.00 0.00 0.00 2.52
840 850 6.526526 AGAAGGAGAAAGGTTACAACTCTTC 58.473 40.000 0.00 0.00 0.00 2.87
969 994 4.700365 GCCGCAGCGTTTGTTCCC 62.700 66.667 15.05 0.00 0.00 3.97
1255 1280 2.599281 TCGGCTGGACGACCTTCA 60.599 61.111 5.33 0.00 38.06 3.02
1259 1284 1.371558 GCTGGACGACCTTCACCTT 59.628 57.895 5.33 0.00 37.04 3.50
1560 1589 4.581824 ACATATCCACGAAGGTACGTACAT 59.418 41.667 26.02 17.76 44.76 2.29
1561 1590 5.068198 ACATATCCACGAAGGTACGTACATT 59.932 40.000 24.17 24.17 44.76 2.71
1562 1591 6.262944 ACATATCCACGAAGGTACGTACATTA 59.737 38.462 24.00 9.97 44.76 1.90
1563 1592 5.779529 ATCCACGAAGGTACGTACATTAT 57.220 39.130 24.00 13.48 44.76 1.28
1565 1594 6.060028 TCCACGAAGGTACGTACATTATAC 57.940 41.667 24.00 12.00 44.76 1.47
1567 1596 5.682862 CCACGAAGGTACGTACATTATACAC 59.317 44.000 24.00 11.33 44.76 2.90
1572 1601 6.630444 AGGTACGTACATTATACACTGAGG 57.370 41.667 26.02 0.00 0.00 3.86
2455 2976 4.505922 GCTTCGTCTTCCATCTAATGACAG 59.494 45.833 0.00 0.00 0.00 3.51
2478 3002 1.267533 GTGGGATAAACGCAAAACCGT 59.732 47.619 0.00 0.00 42.81 4.83
2503 3028 2.087462 AAAAACCGCTCCAGCAAGGC 62.087 55.000 0.00 0.00 42.21 4.35
2513 3038 3.548770 CTCCAGCAAGGCATCAAATAGA 58.451 45.455 0.00 0.00 37.29 1.98
2521 4570 8.623903 CAGCAAGGCATCAAATAGACTAATAAA 58.376 33.333 0.00 0.00 0.00 1.40
2585 4635 7.027874 AGTTATCCTAATCCTTTTGACCACA 57.972 36.000 0.00 0.00 0.00 4.17
2642 4701 4.010349 GGTTGGGTCAGTCTATTTTCTGG 58.990 47.826 0.00 0.00 33.13 3.86
2644 4703 2.912956 TGGGTCAGTCTATTTTCTGGCT 59.087 45.455 0.00 0.00 36.65 4.75
2726 4975 5.276820 GCTTTTGGGTTGAATTTTCGACTTG 60.277 40.000 9.87 0.00 40.64 3.16
2749 5369 3.627577 CCCTTGTTTCGGGTCTATCAATG 59.372 47.826 0.00 0.00 36.91 2.82
3062 5705 2.655090 TGCCACCAATTCAGTCTTCA 57.345 45.000 0.00 0.00 0.00 3.02
3068 5711 5.682212 GCCACCAATTCAGTCTTCAAAACTT 60.682 40.000 0.00 0.00 0.00 2.66
3078 5721 9.573133 TTCAGTCTTCAAAACTTCATTTTCTTC 57.427 29.630 0.00 0.00 38.50 2.87
3079 5722 8.960591 TCAGTCTTCAAAACTTCATTTTCTTCT 58.039 29.630 0.00 0.00 38.50 2.85
3080 5723 9.578439 CAGTCTTCAAAACTTCATTTTCTTCTT 57.422 29.630 0.00 0.00 38.50 2.52
3081 5724 9.794685 AGTCTTCAAAACTTCATTTTCTTCTTC 57.205 29.630 0.00 0.00 38.50 2.87
3082 5725 9.794685 GTCTTCAAAACTTCATTTTCTTCTTCT 57.205 29.630 0.00 0.00 38.50 2.85
3084 5727 9.793252 CTTCAAAACTTCATTTTCTTCTTCTCA 57.207 29.630 0.00 0.00 38.50 3.27
3088 5731 9.591792 AAAACTTCATTTTCTTCTTCTCAAAGG 57.408 29.630 0.00 0.00 35.49 3.11
3089 5732 7.282332 ACTTCATTTTCTTCTTCTCAAAGGG 57.718 36.000 0.00 0.00 33.03 3.95
3090 5733 6.836007 ACTTCATTTTCTTCTTCTCAAAGGGT 59.164 34.615 0.00 0.00 33.03 4.34
3091 5734 7.998964 ACTTCATTTTCTTCTTCTCAAAGGGTA 59.001 33.333 0.00 0.00 33.03 3.69
3092 5735 8.760980 TTCATTTTCTTCTTCTCAAAGGGTAA 57.239 30.769 0.00 0.00 33.03 2.85
3093 5736 8.940397 TCATTTTCTTCTTCTCAAAGGGTAAT 57.060 30.769 0.00 0.00 33.03 1.89
3096 5739 8.631480 TTTTCTTCTTCTCAAAGGGTAATACC 57.369 34.615 0.00 0.00 37.60 2.73
3097 5740 6.945636 TCTTCTTCTCAAAGGGTAATACCA 57.054 37.500 12.03 0.00 41.02 3.25
3098 5741 7.324388 TCTTCTTCTCAAAGGGTAATACCAA 57.676 36.000 12.03 0.00 41.02 3.67
3099 5742 7.928873 TCTTCTTCTCAAAGGGTAATACCAAT 58.071 34.615 12.03 0.00 41.02 3.16
3100 5743 7.829211 TCTTCTTCTCAAAGGGTAATACCAATG 59.171 37.037 12.03 6.87 41.02 2.82
3101 5744 5.885912 TCTTCTCAAAGGGTAATACCAATGC 59.114 40.000 12.03 0.00 41.02 3.56
3102 5745 4.532834 TCTCAAAGGGTAATACCAATGCC 58.467 43.478 12.03 0.00 41.02 4.40
3103 5746 4.229582 TCTCAAAGGGTAATACCAATGCCT 59.770 41.667 12.03 0.00 41.02 4.75
3104 5747 4.941713 TCAAAGGGTAATACCAATGCCTT 58.058 39.130 12.03 2.13 41.02 4.35
3105 5748 4.953579 TCAAAGGGTAATACCAATGCCTTC 59.046 41.667 12.03 0.00 41.02 3.46
3106 5749 4.601406 AAGGGTAATACCAATGCCTTCA 57.399 40.909 12.03 0.00 41.02 3.02
3107 5750 4.601406 AGGGTAATACCAATGCCTTCAA 57.399 40.909 12.03 0.00 41.02 2.69
3108 5751 5.142806 AGGGTAATACCAATGCCTTCAAT 57.857 39.130 12.03 0.00 41.02 2.57
3109 5752 5.140454 AGGGTAATACCAATGCCTTCAATC 58.860 41.667 12.03 0.00 41.02 2.67
3110 5753 4.892934 GGGTAATACCAATGCCTTCAATCA 59.107 41.667 12.03 0.00 41.02 2.57
3111 5754 5.539955 GGGTAATACCAATGCCTTCAATCAT 59.460 40.000 12.03 0.00 41.02 2.45
3112 5755 6.041979 GGGTAATACCAATGCCTTCAATCATT 59.958 38.462 12.03 0.00 41.02 2.57
3113 5756 7.147976 GGTAATACCAATGCCTTCAATCATTC 58.852 38.462 4.24 0.00 38.42 2.67
3114 5757 5.796424 ATACCAATGCCTTCAATCATTCC 57.204 39.130 0.00 0.00 31.15 3.01
3115 5758 3.716431 ACCAATGCCTTCAATCATTCCT 58.284 40.909 0.00 0.00 31.15 3.36
3116 5759 4.098894 ACCAATGCCTTCAATCATTCCTT 58.901 39.130 0.00 0.00 31.15 3.36
3117 5760 4.161001 ACCAATGCCTTCAATCATTCCTTC 59.839 41.667 0.00 0.00 31.15 3.46
3118 5761 4.404715 CCAATGCCTTCAATCATTCCTTCT 59.595 41.667 0.00 0.00 31.15 2.85
3119 5762 5.105064 CCAATGCCTTCAATCATTCCTTCTT 60.105 40.000 0.00 0.00 31.15 2.52
3120 5763 6.097270 CCAATGCCTTCAATCATTCCTTCTTA 59.903 38.462 0.00 0.00 31.15 2.10
3121 5764 7.364056 CCAATGCCTTCAATCATTCCTTCTTAA 60.364 37.037 0.00 0.00 31.15 1.85
3122 5765 7.722949 ATGCCTTCAATCATTCCTTCTTAAA 57.277 32.000 0.00 0.00 0.00 1.52
3123 5766 7.537596 TGCCTTCAATCATTCCTTCTTAAAA 57.462 32.000 0.00 0.00 0.00 1.52
3124 5767 7.961351 TGCCTTCAATCATTCCTTCTTAAAAA 58.039 30.769 0.00 0.00 0.00 1.94
3125 5768 7.872483 TGCCTTCAATCATTCCTTCTTAAAAAC 59.128 33.333 0.00 0.00 0.00 2.43
3126 5769 8.090831 GCCTTCAATCATTCCTTCTTAAAAACT 58.909 33.333 0.00 0.00 0.00 2.66
3127 5770 9.987272 CCTTCAATCATTCCTTCTTAAAAACTT 57.013 29.630 0.00 0.00 0.00 2.66
3129 5772 9.981114 TTCAATCATTCCTTCTTAAAAACTTCC 57.019 29.630 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.985653 TGGAAATACCATGGTTTCTGAAAA 57.014 33.333 25.38 1.68 44.64 2.29
27 28 5.757850 TGCAAAGTGTTTTTGTGGTTTTT 57.242 30.435 0.00 0.00 0.00 1.94
28 29 5.757850 TTGCAAAGTGTTTTTGTGGTTTT 57.242 30.435 0.00 0.00 0.00 2.43
29 30 5.066505 TGTTTGCAAAGTGTTTTTGTGGTTT 59.933 32.000 13.26 0.00 0.00 3.27
30 31 4.576463 TGTTTGCAAAGTGTTTTTGTGGTT 59.424 33.333 13.26 0.00 0.00 3.67
31 32 4.130118 TGTTTGCAAAGTGTTTTTGTGGT 58.870 34.783 13.26 0.00 0.00 4.16
32 33 4.739046 TGTTTGCAAAGTGTTTTTGTGG 57.261 36.364 13.26 0.00 0.00 4.17
33 34 5.113233 CGTTTGTTTGCAAAGTGTTTTTGTG 59.887 36.000 13.26 0.00 44.27 3.33
34 35 5.201181 CGTTTGTTTGCAAAGTGTTTTTGT 58.799 33.333 13.26 0.00 44.27 2.83
35 36 4.086384 GCGTTTGTTTGCAAAGTGTTTTTG 59.914 37.500 13.26 0.00 44.27 2.44
36 37 4.215201 GCGTTTGTTTGCAAAGTGTTTTT 58.785 34.783 13.26 0.00 44.27 1.94
37 38 3.248602 TGCGTTTGTTTGCAAAGTGTTTT 59.751 34.783 13.26 0.00 44.27 2.43
38 39 2.802816 TGCGTTTGTTTGCAAAGTGTTT 59.197 36.364 13.26 0.00 44.27 2.83
39 40 2.156697 GTGCGTTTGTTTGCAAAGTGTT 59.843 40.909 13.26 0.00 44.27 3.32
40 41 1.724082 GTGCGTTTGTTTGCAAAGTGT 59.276 42.857 13.26 0.00 44.27 3.55
41 42 1.060409 GGTGCGTTTGTTTGCAAAGTG 59.940 47.619 13.26 2.05 44.27 3.16
42 43 1.355005 GGTGCGTTTGTTTGCAAAGT 58.645 45.000 13.26 0.00 44.27 2.66
43 44 0.649993 GGGTGCGTTTGTTTGCAAAG 59.350 50.000 13.26 1.16 44.27 2.77
44 45 0.247736 AGGGTGCGTTTGTTTGCAAA 59.752 45.000 8.05 8.05 43.75 3.68
45 46 1.103803 TAGGGTGCGTTTGTTTGCAA 58.896 45.000 0.00 0.00 43.75 4.08
46 47 1.103803 TTAGGGTGCGTTTGTTTGCA 58.896 45.000 0.00 0.00 39.13 4.08
47 48 2.211353 TTTAGGGTGCGTTTGTTTGC 57.789 45.000 0.00 0.00 0.00 3.68
48 49 4.116238 ACAATTTAGGGTGCGTTTGTTTG 58.884 39.130 0.00 0.00 0.00 2.93
49 50 4.394439 ACAATTTAGGGTGCGTTTGTTT 57.606 36.364 0.00 0.00 0.00 2.83
50 51 4.116238 CAACAATTTAGGGTGCGTTTGTT 58.884 39.130 0.00 0.00 37.68 2.83
51 52 3.131400 ACAACAATTTAGGGTGCGTTTGT 59.869 39.130 0.00 0.00 0.00 2.83
52 53 3.712187 ACAACAATTTAGGGTGCGTTTG 58.288 40.909 0.00 0.00 0.00 2.93
53 54 4.116238 CAACAACAATTTAGGGTGCGTTT 58.884 39.130 0.00 0.00 0.00 3.60
54 55 3.381908 TCAACAACAATTTAGGGTGCGTT 59.618 39.130 0.00 0.00 0.00 4.84
55 56 2.952978 TCAACAACAATTTAGGGTGCGT 59.047 40.909 0.00 0.00 0.00 5.24
56 57 3.634568 TCAACAACAATTTAGGGTGCG 57.365 42.857 0.00 0.00 0.00 5.34
57 58 4.881920 ACATCAACAACAATTTAGGGTGC 58.118 39.130 0.00 0.00 0.00 5.01
58 59 7.657336 AGTAACATCAACAACAATTTAGGGTG 58.343 34.615 0.00 0.00 0.00 4.61
59 60 7.833285 AGTAACATCAACAACAATTTAGGGT 57.167 32.000 0.00 0.00 0.00 4.34
68 69 9.952030 TCCAAGATTATAGTAACATCAACAACA 57.048 29.630 0.00 0.00 0.00 3.33
73 74 9.109393 GCACTTCCAAGATTATAGTAACATCAA 57.891 33.333 0.00 0.00 0.00 2.57
74 75 8.264347 TGCACTTCCAAGATTATAGTAACATCA 58.736 33.333 0.00 0.00 0.00 3.07
75 76 8.662781 TGCACTTCCAAGATTATAGTAACATC 57.337 34.615 0.00 0.00 0.00 3.06
77 78 9.764363 CTATGCACTTCCAAGATTATAGTAACA 57.236 33.333 0.00 0.00 0.00 2.41
78 79 9.765795 ACTATGCACTTCCAAGATTATAGTAAC 57.234 33.333 0.00 0.00 32.61 2.50
79 80 9.764363 CACTATGCACTTCCAAGATTATAGTAA 57.236 33.333 0.00 0.00 32.84 2.24
80 81 7.872993 GCACTATGCACTTCCAAGATTATAGTA 59.127 37.037 0.00 0.00 44.26 1.82
81 82 6.708054 GCACTATGCACTTCCAAGATTATAGT 59.292 38.462 0.00 0.00 44.26 2.12
82 83 7.126726 GCACTATGCACTTCCAAGATTATAG 57.873 40.000 0.00 0.00 44.26 1.31
102 103 9.243105 ACACCTTTCATTGTAATAATTAGCACT 57.757 29.630 0.00 0.00 0.00 4.40
103 104 9.855021 AACACCTTTCATTGTAATAATTAGCAC 57.145 29.630 0.00 0.00 0.00 4.40
137 138 3.550437 TTCTCTTCTTAGGCAGATGGC 57.450 47.619 0.00 0.00 43.74 4.40
138 139 5.033589 ACATTCTCTTCTTAGGCAGATGG 57.966 43.478 0.00 0.00 0.00 3.51
139 140 5.055812 GGACATTCTCTTCTTAGGCAGATG 58.944 45.833 0.00 0.00 0.00 2.90
140 141 4.718774 TGGACATTCTCTTCTTAGGCAGAT 59.281 41.667 0.00 0.00 0.00 2.90
141 142 4.081420 GTGGACATTCTCTTCTTAGGCAGA 60.081 45.833 0.00 0.00 0.00 4.26
142 143 4.081198 AGTGGACATTCTCTTCTTAGGCAG 60.081 45.833 0.00 0.00 0.00 4.85
143 144 3.840666 AGTGGACATTCTCTTCTTAGGCA 59.159 43.478 0.00 0.00 0.00 4.75
144 145 4.479786 AGTGGACATTCTCTTCTTAGGC 57.520 45.455 0.00 0.00 0.00 3.93
145 146 7.411486 TCTAAGTGGACATTCTCTTCTTAGG 57.589 40.000 0.00 0.00 35.42 2.69
148 149 9.829507 CATTATCTAAGTGGACATTCTCTTCTT 57.170 33.333 0.00 0.00 0.00 2.52
149 150 8.428063 CCATTATCTAAGTGGACATTCTCTTCT 58.572 37.037 0.00 0.00 34.94 2.85
150 151 8.424918 TCCATTATCTAAGTGGACATTCTCTTC 58.575 37.037 0.00 0.00 37.12 2.87
151 152 8.324191 TCCATTATCTAAGTGGACATTCTCTT 57.676 34.615 0.00 0.00 37.12 2.85
152 153 7.016072 CCTCCATTATCTAAGTGGACATTCTCT 59.984 40.741 0.00 0.00 37.12 3.10
153 154 7.158021 CCTCCATTATCTAAGTGGACATTCTC 58.842 42.308 0.00 0.00 37.12 2.87
154 155 6.617371 ACCTCCATTATCTAAGTGGACATTCT 59.383 38.462 0.00 0.00 37.12 2.40
155 156 6.831976 ACCTCCATTATCTAAGTGGACATTC 58.168 40.000 0.00 0.00 37.12 2.67
156 157 6.831664 ACCTCCATTATCTAAGTGGACATT 57.168 37.500 0.00 0.00 37.12 2.71
157 158 7.931015 TTACCTCCATTATCTAAGTGGACAT 57.069 36.000 0.00 0.00 37.12 3.06
158 159 7.689313 GCATTACCTCCATTATCTAAGTGGACA 60.689 40.741 0.00 0.00 37.12 4.02
159 160 6.651225 GCATTACCTCCATTATCTAAGTGGAC 59.349 42.308 0.00 0.00 37.12 4.02
160 161 6.558775 AGCATTACCTCCATTATCTAAGTGGA 59.441 38.462 0.00 0.00 39.61 4.02
161 162 6.773638 AGCATTACCTCCATTATCTAAGTGG 58.226 40.000 0.00 0.00 0.00 4.00
162 163 9.950496 AATAGCATTACCTCCATTATCTAAGTG 57.050 33.333 0.00 0.00 0.00 3.16
217 218 9.823647 CTATGTTGATTAAGATACAGACAACCT 57.176 33.333 0.00 0.00 36.40 3.50
227 228 8.547481 TGGACAGGACTATGTTGATTAAGATA 57.453 34.615 0.00 0.00 32.25 1.98
240 241 4.141251 ACAACACCTTTTGGACAGGACTAT 60.141 41.667 0.00 0.00 44.07 2.12
269 270 0.443869 CCATTTGTCACCGCTCTTCG 59.556 55.000 0.00 0.00 38.08 3.79
272 273 2.086869 CAATCCATTTGTCACCGCTCT 58.913 47.619 0.00 0.00 0.00 4.09
273 274 1.468054 GCAATCCATTTGTCACCGCTC 60.468 52.381 0.00 0.00 37.65 5.03
274 275 0.527565 GCAATCCATTTGTCACCGCT 59.472 50.000 0.00 0.00 37.65 5.52
275 276 0.798009 CGCAATCCATTTGTCACCGC 60.798 55.000 0.00 0.00 37.65 5.68
276 277 0.798009 GCGCAATCCATTTGTCACCG 60.798 55.000 0.30 0.00 37.65 4.94
277 278 0.527565 AGCGCAATCCATTTGTCACC 59.472 50.000 11.47 0.00 37.65 4.02
278 279 2.095059 AGAAGCGCAATCCATTTGTCAC 60.095 45.455 11.47 0.00 37.65 3.67
279 280 2.161855 AGAAGCGCAATCCATTTGTCA 58.838 42.857 11.47 0.00 37.65 3.58
280 281 2.927553 AGAAGCGCAATCCATTTGTC 57.072 45.000 11.47 0.00 37.65 3.18
281 282 3.665745 AAAGAAGCGCAATCCATTTGT 57.334 38.095 11.47 0.00 37.65 2.83
282 283 4.996062 AAAAAGAAGCGCAATCCATTTG 57.004 36.364 11.47 0.00 38.43 2.32
283 284 6.024552 TCTAAAAAGAAGCGCAATCCATTT 57.975 33.333 11.47 13.25 0.00 2.32
284 285 5.643379 TCTAAAAAGAAGCGCAATCCATT 57.357 34.783 11.47 3.18 0.00 3.16
285 286 5.841957 ATCTAAAAAGAAGCGCAATCCAT 57.158 34.783 11.47 0.00 0.00 3.41
286 287 6.751514 TTATCTAAAAAGAAGCGCAATCCA 57.248 33.333 11.47 0.00 0.00 3.41
287 288 7.220875 CCTTTTATCTAAAAAGAAGCGCAATCC 59.779 37.037 11.47 0.00 39.04 3.01
288 289 7.220875 CCCTTTTATCTAAAAAGAAGCGCAATC 59.779 37.037 11.47 7.77 39.04 2.67
289 290 7.035612 CCCTTTTATCTAAAAAGAAGCGCAAT 58.964 34.615 11.47 0.00 39.04 3.56
290 291 6.015772 ACCCTTTTATCTAAAAAGAAGCGCAA 60.016 34.615 11.47 0.00 39.04 4.85
291 292 5.475564 ACCCTTTTATCTAAAAAGAAGCGCA 59.524 36.000 11.47 0.00 39.04 6.09
292 293 5.950883 ACCCTTTTATCTAAAAAGAAGCGC 58.049 37.500 0.00 0.00 39.04 5.92
349 350 3.272581 TCGTACCATGAGTCACGTATGA 58.727 45.455 15.43 15.43 35.91 2.15
350 351 3.685836 TCGTACCATGAGTCACGTATG 57.314 47.619 12.34 12.34 35.91 2.39
351 352 4.913335 AATCGTACCATGAGTCACGTAT 57.087 40.909 0.00 0.00 35.91 3.06
352 353 4.707030 AAATCGTACCATGAGTCACGTA 57.293 40.909 0.00 0.00 35.91 3.57
353 354 3.587797 AAATCGTACCATGAGTCACGT 57.412 42.857 0.00 0.00 35.91 4.49
354 355 6.916387 ACTTATAAATCGTACCATGAGTCACG 59.084 38.462 0.00 0.00 35.78 4.35
355 356 8.644318 AACTTATAAATCGTACCATGAGTCAC 57.356 34.615 0.00 0.00 0.00 3.67
388 389 3.550437 TTCTCTTCTTAGGCAGATGGC 57.450 47.619 0.00 0.00 43.74 4.40
389 390 5.033589 ACATTCTCTTCTTAGGCAGATGG 57.966 43.478 0.00 0.00 0.00 3.51
390 391 5.055812 GGACATTCTCTTCTTAGGCAGATG 58.944 45.833 0.00 0.00 0.00 2.90
391 392 4.718774 TGGACATTCTCTTCTTAGGCAGAT 59.281 41.667 0.00 0.00 0.00 2.90
392 393 4.081420 GTGGACATTCTCTTCTTAGGCAGA 60.081 45.833 0.00 0.00 0.00 4.26
393 394 4.081198 AGTGGACATTCTCTTCTTAGGCAG 60.081 45.833 0.00 0.00 0.00 4.85
394 395 3.840666 AGTGGACATTCTCTTCTTAGGCA 59.159 43.478 0.00 0.00 0.00 4.75
395 396 4.479786 AGTGGACATTCTCTTCTTAGGC 57.520 45.455 0.00 0.00 0.00 3.93
396 397 7.411486 TCTAAGTGGACATTCTCTTCTTAGG 57.589 40.000 0.00 0.00 35.42 2.69
397 398 8.474025 ACATCTAAGTGGACATTCTCTTCTTAG 58.526 37.037 0.00 0.00 35.68 2.18
398 399 8.367660 ACATCTAAGTGGACATTCTCTTCTTA 57.632 34.615 0.00 0.00 0.00 2.10
399 400 7.251321 ACATCTAAGTGGACATTCTCTTCTT 57.749 36.000 0.00 0.00 0.00 2.52
400 401 6.865834 ACATCTAAGTGGACATTCTCTTCT 57.134 37.500 0.00 0.00 0.00 2.85
401 402 8.254508 ACTAACATCTAAGTGGACATTCTCTTC 58.745 37.037 0.00 0.00 0.00 2.87
402 403 8.140112 ACTAACATCTAAGTGGACATTCTCTT 57.860 34.615 0.00 0.00 0.00 2.85
403 404 7.726033 ACTAACATCTAAGTGGACATTCTCT 57.274 36.000 0.00 0.00 0.00 3.10
404 405 9.469807 CATACTAACATCTAAGTGGACATTCTC 57.530 37.037 0.00 0.00 0.00 2.87
405 406 8.982723 ACATACTAACATCTAAGTGGACATTCT 58.017 33.333 0.00 0.00 0.00 2.40
406 407 9.601217 AACATACTAACATCTAAGTGGACATTC 57.399 33.333 0.00 0.00 0.00 2.67
409 410 8.692710 CCTAACATACTAACATCTAAGTGGACA 58.307 37.037 0.00 0.00 0.00 4.02
410 411 8.910944 TCCTAACATACTAACATCTAAGTGGAC 58.089 37.037 0.00 0.00 0.00 4.02
411 412 9.656323 ATCCTAACATACTAACATCTAAGTGGA 57.344 33.333 0.00 0.00 0.00 4.02
412 413 9.698309 CATCCTAACATACTAACATCTAAGTGG 57.302 37.037 0.00 0.00 0.00 4.00
413 414 9.197694 GCATCCTAACATACTAACATCTAAGTG 57.802 37.037 0.00 0.00 0.00 3.16
414 415 8.924303 TGCATCCTAACATACTAACATCTAAGT 58.076 33.333 0.00 0.00 0.00 2.24
415 416 9.935241 ATGCATCCTAACATACTAACATCTAAG 57.065 33.333 0.00 0.00 0.00 2.18
416 417 9.929180 GATGCATCCTAACATACTAACATCTAA 57.071 33.333 16.23 0.00 0.00 2.10
417 418 9.314133 AGATGCATCCTAACATACTAACATCTA 57.686 33.333 23.06 0.00 38.88 1.98
418 419 8.200024 AGATGCATCCTAACATACTAACATCT 57.800 34.615 23.06 0.00 36.58 2.90
419 420 8.310382 AGAGATGCATCCTAACATACTAACATC 58.690 37.037 23.06 8.05 0.00 3.06
420 421 8.093307 CAGAGATGCATCCTAACATACTAACAT 58.907 37.037 23.06 0.00 0.00 2.71
421 422 7.436933 CAGAGATGCATCCTAACATACTAACA 58.563 38.462 23.06 0.00 0.00 2.41
422 423 6.367422 GCAGAGATGCATCCTAACATACTAAC 59.633 42.308 23.06 0.00 34.41 2.34
423 424 6.041979 TGCAGAGATGCATCCTAACATACTAA 59.958 38.462 23.06 0.00 40.23 2.24
424 425 5.539955 TGCAGAGATGCATCCTAACATACTA 59.460 40.000 23.06 0.00 40.23 1.82
425 426 4.346127 TGCAGAGATGCATCCTAACATACT 59.654 41.667 23.06 0.65 40.23 2.12
426 427 4.635223 TGCAGAGATGCATCCTAACATAC 58.365 43.478 23.06 5.75 40.23 2.39
427 428 4.961438 TGCAGAGATGCATCCTAACATA 57.039 40.909 23.06 1.58 40.23 2.29
428 429 3.851458 TGCAGAGATGCATCCTAACAT 57.149 42.857 23.06 3.07 40.23 2.71
437 438 1.478105 ACAGATACGTGCAGAGATGCA 59.522 47.619 0.00 0.00 43.22 3.96
438 439 2.215907 ACAGATACGTGCAGAGATGC 57.784 50.000 0.00 0.00 0.00 3.91
439 440 3.515630 ACAACAGATACGTGCAGAGATG 58.484 45.455 0.00 0.00 0.00 2.90
440 441 3.445450 AGACAACAGATACGTGCAGAGAT 59.555 43.478 0.00 0.00 0.00 2.75
441 442 2.820197 AGACAACAGATACGTGCAGAGA 59.180 45.455 0.00 0.00 0.00 3.10
442 443 2.919859 CAGACAACAGATACGTGCAGAG 59.080 50.000 0.00 0.00 0.00 3.35
443 444 2.296190 ACAGACAACAGATACGTGCAGA 59.704 45.455 0.00 0.00 0.00 4.26
444 445 2.677199 ACAGACAACAGATACGTGCAG 58.323 47.619 0.00 0.00 0.00 4.41
445 446 2.799978 CAACAGACAACAGATACGTGCA 59.200 45.455 0.00 0.00 0.00 4.57
446 447 3.057019 TCAACAGACAACAGATACGTGC 58.943 45.455 0.00 0.00 0.00 5.34
447 448 3.675225 CCTCAACAGACAACAGATACGTG 59.325 47.826 0.00 0.00 0.00 4.49
448 449 3.572682 TCCTCAACAGACAACAGATACGT 59.427 43.478 0.00 0.00 0.00 3.57
449 450 4.174411 TCCTCAACAGACAACAGATACG 57.826 45.455 0.00 0.00 0.00 3.06
450 451 6.091441 GTCATTCCTCAACAGACAACAGATAC 59.909 42.308 0.00 0.00 0.00 2.24
451 452 6.166279 GTCATTCCTCAACAGACAACAGATA 58.834 40.000 0.00 0.00 0.00 1.98
452 453 4.999950 GTCATTCCTCAACAGACAACAGAT 59.000 41.667 0.00 0.00 0.00 2.90
453 454 4.380531 GTCATTCCTCAACAGACAACAGA 58.619 43.478 0.00 0.00 0.00 3.41
454 455 3.499918 GGTCATTCCTCAACAGACAACAG 59.500 47.826 0.00 0.00 0.00 3.16
455 456 3.476552 GGTCATTCCTCAACAGACAACA 58.523 45.455 0.00 0.00 0.00 3.33
456 457 2.480419 CGGTCATTCCTCAACAGACAAC 59.520 50.000 0.00 0.00 0.00 3.32
457 458 2.367241 TCGGTCATTCCTCAACAGACAA 59.633 45.455 0.00 0.00 0.00 3.18
458 459 1.967779 TCGGTCATTCCTCAACAGACA 59.032 47.619 0.00 0.00 0.00 3.41
459 460 2.611518 CTCGGTCATTCCTCAACAGAC 58.388 52.381 0.00 0.00 0.00 3.51
460 461 1.550524 CCTCGGTCATTCCTCAACAGA 59.449 52.381 0.00 0.00 0.00 3.41
461 462 1.550524 TCCTCGGTCATTCCTCAACAG 59.449 52.381 0.00 0.00 0.00 3.16
462 463 1.550524 CTCCTCGGTCATTCCTCAACA 59.449 52.381 0.00 0.00 0.00 3.33
463 464 1.550976 ACTCCTCGGTCATTCCTCAAC 59.449 52.381 0.00 0.00 0.00 3.18
464 465 1.825474 GACTCCTCGGTCATTCCTCAA 59.175 52.381 0.00 0.00 36.35 3.02
465 466 1.006043 AGACTCCTCGGTCATTCCTCA 59.994 52.381 0.00 0.00 38.57 3.86
466 467 1.407258 CAGACTCCTCGGTCATTCCTC 59.593 57.143 0.00 0.00 38.57 3.71
467 468 1.272760 ACAGACTCCTCGGTCATTCCT 60.273 52.381 0.00 0.00 38.57 3.36
468 469 1.134965 CACAGACTCCTCGGTCATTCC 60.135 57.143 0.00 0.00 38.57 3.01
469 470 1.546476 ACACAGACTCCTCGGTCATTC 59.454 52.381 0.00 0.00 38.57 2.67
470 471 1.546476 GACACAGACTCCTCGGTCATT 59.454 52.381 0.00 0.00 38.57 2.57
471 472 1.178276 GACACAGACTCCTCGGTCAT 58.822 55.000 0.00 0.00 38.57 3.06
472 473 0.179001 TGACACAGACTCCTCGGTCA 60.179 55.000 0.00 0.00 38.57 4.02
473 474 0.523966 CTGACACAGACTCCTCGGTC 59.476 60.000 0.00 0.00 32.44 4.79
474 475 0.110678 TCTGACACAGACTCCTCGGT 59.889 55.000 0.00 0.00 35.39 4.69
475 476 0.808125 CTCTGACACAGACTCCTCGG 59.192 60.000 0.00 0.00 35.39 4.63
476 477 0.170116 GCTCTGACACAGACTCCTCG 59.830 60.000 0.00 0.00 35.39 4.63
477 478 1.252175 TGCTCTGACACAGACTCCTC 58.748 55.000 0.00 0.00 35.39 3.71
478 479 1.709578 TTGCTCTGACACAGACTCCT 58.290 50.000 0.00 0.00 35.39 3.69
479 480 2.139118 GTTTGCTCTGACACAGACTCC 58.861 52.381 0.00 0.00 35.39 3.85
480 481 2.826428 TGTTTGCTCTGACACAGACTC 58.174 47.619 0.00 0.00 35.39 3.36
481 482 2.988010 TGTTTGCTCTGACACAGACT 57.012 45.000 0.00 0.00 35.39 3.24
482 483 3.790123 GCTTTGTTTGCTCTGACACAGAC 60.790 47.826 0.00 0.00 35.39 3.51
483 484 2.355756 GCTTTGTTTGCTCTGACACAGA 59.644 45.455 0.00 0.00 38.25 3.41
484 485 2.357009 AGCTTTGTTTGCTCTGACACAG 59.643 45.455 0.00 0.00 35.67 3.66
485 486 2.368439 AGCTTTGTTTGCTCTGACACA 58.632 42.857 0.00 0.00 35.67 3.72
486 487 3.111098 CAAGCTTTGTTTGCTCTGACAC 58.889 45.455 0.00 0.00 40.22 3.67
487 488 2.480073 GCAAGCTTTGTTTGCTCTGACA 60.480 45.455 10.94 0.00 44.24 3.58
488 489 2.122564 GCAAGCTTTGTTTGCTCTGAC 58.877 47.619 10.94 0.00 44.24 3.51
489 490 2.497107 GCAAGCTTTGTTTGCTCTGA 57.503 45.000 10.94 0.00 44.24 3.27
495 496 7.641020 CCATTTTCTTAAAGCAAGCTTTGTTTG 59.359 33.333 25.64 14.30 44.84 2.93
496 497 7.201723 CCCATTTTCTTAAAGCAAGCTTTGTTT 60.202 33.333 25.64 1.90 44.84 2.83
497 498 6.260714 CCCATTTTCTTAAAGCAAGCTTTGTT 59.739 34.615 25.64 6.52 44.84 2.83
498 499 5.759763 CCCATTTTCTTAAAGCAAGCTTTGT 59.240 36.000 25.64 7.20 44.84 2.83
499 500 5.759763 ACCCATTTTCTTAAAGCAAGCTTTG 59.240 36.000 25.64 12.94 44.84 2.77
500 501 5.759763 CACCCATTTTCTTAAAGCAAGCTTT 59.240 36.000 21.98 21.98 46.56 3.51
501 502 5.299949 CACCCATTTTCTTAAAGCAAGCTT 58.700 37.500 0.59 0.59 37.98 3.74
502 503 4.262592 CCACCCATTTTCTTAAAGCAAGCT 60.263 41.667 0.00 0.00 33.94 3.74
503 504 3.996363 CCACCCATTTTCTTAAAGCAAGC 59.004 43.478 0.00 0.00 33.94 4.01
504 505 4.283212 TCCCACCCATTTTCTTAAAGCAAG 59.717 41.667 0.00 0.00 35.38 4.01
505 506 4.227197 TCCCACCCATTTTCTTAAAGCAA 58.773 39.130 0.00 0.00 0.00 3.91
506 507 3.850752 TCCCACCCATTTTCTTAAAGCA 58.149 40.909 0.00 0.00 0.00 3.91
507 508 4.222810 ACATCCCACCCATTTTCTTAAAGC 59.777 41.667 0.00 0.00 0.00 3.51
508 509 5.723295 CACATCCCACCCATTTTCTTAAAG 58.277 41.667 0.00 0.00 0.00 1.85
509 510 4.020662 GCACATCCCACCCATTTTCTTAAA 60.021 41.667 0.00 0.00 0.00 1.52
510 511 3.513515 GCACATCCCACCCATTTTCTTAA 59.486 43.478 0.00 0.00 0.00 1.85
511 512 3.096092 GCACATCCCACCCATTTTCTTA 58.904 45.455 0.00 0.00 0.00 2.10
512 513 1.901833 GCACATCCCACCCATTTTCTT 59.098 47.619 0.00 0.00 0.00 2.52
513 514 1.077663 AGCACATCCCACCCATTTTCT 59.922 47.619 0.00 0.00 0.00 2.52
514 515 1.478105 GAGCACATCCCACCCATTTTC 59.522 52.381 0.00 0.00 0.00 2.29
515 516 1.077663 AGAGCACATCCCACCCATTTT 59.922 47.619 0.00 0.00 0.00 1.82
516 517 0.706433 AGAGCACATCCCACCCATTT 59.294 50.000 0.00 0.00 0.00 2.32
517 518 0.257039 GAGAGCACATCCCACCCATT 59.743 55.000 0.00 0.00 0.00 3.16
518 519 1.639635 GGAGAGCACATCCCACCCAT 61.640 60.000 0.00 0.00 0.00 4.00
519 520 2.300967 GGAGAGCACATCCCACCCA 61.301 63.158 0.00 0.00 0.00 4.51
520 521 1.639635 ATGGAGAGCACATCCCACCC 61.640 60.000 0.00 0.00 35.86 4.61
521 522 0.179034 GATGGAGAGCACATCCCACC 60.179 60.000 0.00 0.00 38.98 4.61
522 523 3.393472 GATGGAGAGCACATCCCAC 57.607 57.895 0.00 0.00 38.98 4.61
526 527 3.894427 TCTAGAAGGATGGAGAGCACATC 59.106 47.826 0.00 0.00 43.04 3.06
527 528 3.921104 TCTAGAAGGATGGAGAGCACAT 58.079 45.455 0.00 0.00 0.00 3.21
528 529 3.388552 TCTAGAAGGATGGAGAGCACA 57.611 47.619 0.00 0.00 0.00 4.57
529 530 3.704061 ACTTCTAGAAGGATGGAGAGCAC 59.296 47.826 30.98 0.00 42.53 4.40
530 531 3.987745 ACTTCTAGAAGGATGGAGAGCA 58.012 45.455 30.98 0.00 42.53 4.26
531 532 5.351948 AAACTTCTAGAAGGATGGAGAGC 57.648 43.478 30.98 0.00 42.53 4.09
532 533 6.940739 TGAAAACTTCTAGAAGGATGGAGAG 58.059 40.000 30.98 8.82 42.53 3.20
533 534 6.935240 TGAAAACTTCTAGAAGGATGGAGA 57.065 37.500 30.98 10.19 42.53 3.71
534 535 7.390027 TCTTGAAAACTTCTAGAAGGATGGAG 58.610 38.462 30.98 21.08 42.53 3.86
535 536 7.316393 TCTTGAAAACTTCTAGAAGGATGGA 57.684 36.000 30.98 17.79 42.53 3.41
536 537 7.986085 TTCTTGAAAACTTCTAGAAGGATGG 57.014 36.000 30.98 16.21 43.26 3.51
543 544 9.930693 GACTATTCCTTCTTGAAAACTTCTAGA 57.069 33.333 0.00 0.00 39.24 2.43
544 545 9.712305 TGACTATTCCTTCTTGAAAACTTCTAG 57.288 33.333 0.00 0.00 34.47 2.43
546 547 8.980481 TTGACTATTCCTTCTTGAAAACTTCT 57.020 30.769 0.00 0.00 0.00 2.85
549 550 9.579932 AGATTTGACTATTCCTTCTTGAAAACT 57.420 29.630 0.00 0.00 0.00 2.66
566 567 9.182214 AGCACATGATAACATTTAGATTTGACT 57.818 29.630 0.00 0.00 34.15 3.41
576 577 9.177608 ACAACACTATAGCACATGATAACATTT 57.822 29.630 0.00 0.00 34.15 2.32
577 578 8.737168 ACAACACTATAGCACATGATAACATT 57.263 30.769 0.00 0.00 34.15 2.71
578 579 8.737168 AACAACACTATAGCACATGATAACAT 57.263 30.769 0.00 0.00 37.19 2.71
579 580 9.830975 ATAACAACACTATAGCACATGATAACA 57.169 29.630 0.00 0.00 0.00 2.41
593 594 9.695155 ACCTTTATTTGGCTATAACAACACTAT 57.305 29.630 0.00 0.00 0.00 2.12
594 595 9.523168 AACCTTTATTTGGCTATAACAACACTA 57.477 29.630 0.00 0.00 0.00 2.74
595 596 8.417273 AACCTTTATTTGGCTATAACAACACT 57.583 30.769 0.00 0.00 0.00 3.55
596 597 7.483691 CGAACCTTTATTTGGCTATAACAACAC 59.516 37.037 0.00 0.00 0.00 3.32
597 598 7.175293 ACGAACCTTTATTTGGCTATAACAACA 59.825 33.333 0.00 0.00 0.00 3.33
598 599 7.532571 ACGAACCTTTATTTGGCTATAACAAC 58.467 34.615 0.00 0.00 0.00 3.32
599 600 7.690952 ACGAACCTTTATTTGGCTATAACAA 57.309 32.000 0.00 0.00 0.00 2.83
600 601 7.690952 AACGAACCTTTATTTGGCTATAACA 57.309 32.000 0.00 0.00 0.00 2.41
601 602 8.238631 TCAAACGAACCTTTATTTGGCTATAAC 58.761 33.333 0.00 0.00 33.72 1.89
602 603 8.338072 TCAAACGAACCTTTATTTGGCTATAA 57.662 30.769 0.00 0.00 33.72 0.98
603 604 7.825270 TCTCAAACGAACCTTTATTTGGCTATA 59.175 33.333 0.00 0.00 33.72 1.31
604 605 6.657541 TCTCAAACGAACCTTTATTTGGCTAT 59.342 34.615 0.00 0.00 33.72 2.97
605 606 5.998981 TCTCAAACGAACCTTTATTTGGCTA 59.001 36.000 0.00 0.00 33.72 3.93
606 607 4.825085 TCTCAAACGAACCTTTATTTGGCT 59.175 37.500 0.00 0.00 33.72 4.75
607 608 5.116069 TCTCAAACGAACCTTTATTTGGC 57.884 39.130 0.00 0.00 33.72 4.52
608 609 8.587952 AAATTCTCAAACGAACCTTTATTTGG 57.412 30.769 0.00 0.00 33.72 3.28
611 612 9.040939 CCAAAAATTCTCAAACGAACCTTTATT 57.959 29.630 0.00 0.00 0.00 1.40
612 613 8.417884 TCCAAAAATTCTCAAACGAACCTTTAT 58.582 29.630 0.00 0.00 0.00 1.40
613 614 7.773149 TCCAAAAATTCTCAAACGAACCTTTA 58.227 30.769 0.00 0.00 0.00 1.85
614 615 6.635755 TCCAAAAATTCTCAAACGAACCTTT 58.364 32.000 0.00 0.00 0.00 3.11
615 616 6.215495 TCCAAAAATTCTCAAACGAACCTT 57.785 33.333 0.00 0.00 0.00 3.50
616 617 5.845391 TCCAAAAATTCTCAAACGAACCT 57.155 34.783 0.00 0.00 0.00 3.50
626 627 8.968242 GCCGTTTGAATATATCCAAAAATTCTC 58.032 33.333 0.00 0.00 34.52 2.87
627 628 7.647715 CGCCGTTTGAATATATCCAAAAATTCT 59.352 33.333 0.00 0.00 34.52 2.40
628 629 7.566868 GCGCCGTTTGAATATATCCAAAAATTC 60.567 37.037 0.00 0.00 34.52 2.17
629 630 6.200097 GCGCCGTTTGAATATATCCAAAAATT 59.800 34.615 0.00 0.00 34.52 1.82
630 631 5.689961 GCGCCGTTTGAATATATCCAAAAAT 59.310 36.000 0.00 0.00 34.52 1.82
631 632 5.038033 GCGCCGTTTGAATATATCCAAAAA 58.962 37.500 0.00 0.00 34.52 1.94
632 633 4.602995 GCGCCGTTTGAATATATCCAAAA 58.397 39.130 0.00 0.00 34.52 2.44
633 634 3.303461 CGCGCCGTTTGAATATATCCAAA 60.303 43.478 0.00 0.00 0.00 3.28
634 635 2.222213 CGCGCCGTTTGAATATATCCAA 59.778 45.455 0.00 0.00 0.00 3.53
635 636 1.795872 CGCGCCGTTTGAATATATCCA 59.204 47.619 0.00 0.00 0.00 3.41
636 637 1.127951 CCGCGCCGTTTGAATATATCC 59.872 52.381 0.00 0.00 0.00 2.59
637 638 1.463528 GCCGCGCCGTTTGAATATATC 60.464 52.381 0.00 0.00 0.00 1.63
638 639 0.515564 GCCGCGCCGTTTGAATATAT 59.484 50.000 0.00 0.00 0.00 0.86
639 640 0.810426 TGCCGCGCCGTTTGAATATA 60.810 50.000 0.00 0.00 0.00 0.86
640 641 1.649390 TTGCCGCGCCGTTTGAATAT 61.649 50.000 0.00 0.00 0.00 1.28
641 642 1.853114 TTTGCCGCGCCGTTTGAATA 61.853 50.000 0.00 0.00 0.00 1.75
642 643 3.200887 TTTGCCGCGCCGTTTGAAT 62.201 52.632 0.00 0.00 0.00 2.57
643 644 3.815569 CTTTGCCGCGCCGTTTGAA 62.816 57.895 0.00 0.00 0.00 2.69
644 645 4.320928 CTTTGCCGCGCCGTTTGA 62.321 61.111 0.00 0.00 0.00 2.69
657 658 4.025401 AAGCGAACGCGGGCTTTG 62.025 61.111 22.84 9.19 46.71 2.77
665 666 3.598668 CGTATCATACTAGAAGCGAACGC 59.401 47.826 11.31 11.31 42.33 4.84
666 667 3.598668 GCGTATCATACTAGAAGCGAACG 59.401 47.826 0.00 0.96 0.00 3.95
667 668 4.613448 CAGCGTATCATACTAGAAGCGAAC 59.387 45.833 0.00 0.00 0.00 3.95
668 669 4.784329 CAGCGTATCATACTAGAAGCGAA 58.216 43.478 0.00 0.00 0.00 4.70
669 670 3.365064 GCAGCGTATCATACTAGAAGCGA 60.365 47.826 0.00 0.00 0.00 4.93
670 671 2.911723 GCAGCGTATCATACTAGAAGCG 59.088 50.000 0.00 0.00 0.00 4.68
671 672 3.057174 AGGCAGCGTATCATACTAGAAGC 60.057 47.826 0.00 0.00 0.00 3.86
672 673 4.480541 CAGGCAGCGTATCATACTAGAAG 58.519 47.826 0.00 0.00 0.00 2.85
673 674 3.305403 GCAGGCAGCGTATCATACTAGAA 60.305 47.826 0.00 0.00 0.00 2.10
674 675 2.229062 GCAGGCAGCGTATCATACTAGA 59.771 50.000 0.00 0.00 0.00 2.43
675 676 2.600731 GCAGGCAGCGTATCATACTAG 58.399 52.381 0.00 0.00 0.00 2.57
676 677 2.724977 GCAGGCAGCGTATCATACTA 57.275 50.000 0.00 0.00 0.00 1.82
677 678 3.595691 GCAGGCAGCGTATCATACT 57.404 52.632 0.00 0.00 0.00 2.12
687 688 1.674322 TAAACGAAGGGCAGGCAGC 60.674 57.895 0.00 0.00 44.65 5.25
688 689 1.635663 CGTAAACGAAGGGCAGGCAG 61.636 60.000 0.00 0.00 43.02 4.85
696 697 3.226346 TCAGATGGACGTAAACGAAGG 57.774 47.619 9.86 0.00 43.02 3.46
714 715 2.824936 TGGAACCGTCGGTTACTAATCA 59.175 45.455 33.68 19.58 46.95 2.57
732 733 0.320374 GACACGTGTCAGGGATTGGA 59.680 55.000 37.16 0.00 44.18 3.53
818 828 5.369993 AGGAAGAGTTGTAACCTTTCTCCTT 59.630 40.000 0.00 0.00 0.00 3.36
992 1017 4.504596 GGCGCCCCATGACCATGA 62.505 66.667 18.11 0.00 41.20 3.07
1035 1060 1.372838 CGAGAAGAGCGAGCAGGAGA 61.373 60.000 0.00 0.00 0.00 3.71
1255 1280 0.038526 CTGTAGTTCGCGTGGAAGGT 60.039 55.000 5.77 0.00 34.69 3.50
1259 1284 0.242825 CTTCCTGTAGTTCGCGTGGA 59.757 55.000 5.77 1.08 0.00 4.02
1502 1527 0.725117 GAAGTAAACATCGCCGGTGG 59.275 55.000 16.49 1.91 0.00 4.61
1560 1589 9.521841 CTATCTGGATTAGTCCTCAGTGTATAA 57.478 37.037 5.79 0.00 45.32 0.98
1561 1590 7.612244 GCTATCTGGATTAGTCCTCAGTGTATA 59.388 40.741 5.79 0.00 45.32 1.47
1562 1591 6.435904 GCTATCTGGATTAGTCCTCAGTGTAT 59.564 42.308 5.79 0.00 45.32 2.29
1563 1592 5.770663 GCTATCTGGATTAGTCCTCAGTGTA 59.229 44.000 5.79 0.00 45.32 2.90
1565 1594 4.832266 AGCTATCTGGATTAGTCCTCAGTG 59.168 45.833 5.79 0.00 45.32 3.66
1567 1596 5.774690 AGAAGCTATCTGGATTAGTCCTCAG 59.225 44.000 5.79 0.00 45.32 3.35
1624 1659 6.176975 TGCACGGATCAGTAGTTTTAATTG 57.823 37.500 0.00 0.00 0.00 2.32
1919 1954 1.302192 GTTCAGCGCCACCCAGTAA 60.302 57.895 2.29 0.00 0.00 2.24
2260 2574 3.823304 ACCCAAGATTGAGAACAAAGAGC 59.177 43.478 0.00 0.00 39.54 4.09
2455 2976 2.324860 GTTTTGCGTTTATCCCACTGC 58.675 47.619 0.00 0.00 0.00 4.40
2478 3002 2.224426 TGCTGGAGCGGTTTTTCTTCTA 60.224 45.455 0.00 0.00 45.83 2.10
2521 4570 5.422970 TGACCATAACTACGGAATAAGGTGT 59.577 40.000 0.00 0.00 0.00 4.16
2530 4579 3.433343 TCTGGTTGACCATAACTACGGA 58.567 45.455 2.85 0.00 46.46 4.69
2571 4621 8.472007 TTTTACTAACATGTGGTCAAAAGGAT 57.528 30.769 0.00 0.00 0.00 3.24
2642 4701 7.223387 ACAAATCTTGACAAAAGAATCAACAGC 59.777 33.333 0.00 0.00 31.62 4.40
2644 4703 7.010367 GCACAAATCTTGACAAAAGAATCAACA 59.990 33.333 0.00 0.00 31.62 3.33
2699 4758 3.247411 CGAAAATTCAACCCAAAAGCCAC 59.753 43.478 0.00 0.00 0.00 5.01
2749 5369 1.947456 ACGGGTTTCAAGCTCAAGAAC 59.053 47.619 0.00 0.00 0.00 3.01
2955 5594 8.816144 ACCAAATTGCACTTTTTATAATATGCG 58.184 29.630 0.00 0.00 35.83 4.73
3017 5659 7.324388 TGGTATTACCCTTTGAGAAGAAGAA 57.676 36.000 10.37 0.00 37.50 2.52
3019 5661 7.415653 GCATTGGTATTACCCTTTGAGAAGAAG 60.416 40.741 10.37 0.00 37.50 2.85
3062 5705 9.591792 CCTTTGAGAAGAAGAAAATGAAGTTTT 57.408 29.630 0.00 0.00 37.62 2.43
3068 5711 8.940397 ATTACCCTTTGAGAAGAAGAAAATGA 57.060 30.769 0.00 0.00 34.71 2.57
3075 5718 7.415653 GCATTGGTATTACCCTTTGAGAAGAAG 60.416 40.741 10.37 0.00 37.50 2.85
3078 5721 5.067805 GGCATTGGTATTACCCTTTGAGAAG 59.932 44.000 10.37 0.00 37.50 2.85
3079 5722 4.953579 GGCATTGGTATTACCCTTTGAGAA 59.046 41.667 10.37 0.00 37.50 2.87
3080 5723 4.229582 AGGCATTGGTATTACCCTTTGAGA 59.770 41.667 10.37 0.00 37.50 3.27
3081 5724 4.536765 AGGCATTGGTATTACCCTTTGAG 58.463 43.478 10.37 0.00 37.50 3.02
3082 5725 4.601406 AGGCATTGGTATTACCCTTTGA 57.399 40.909 10.37 0.00 37.50 2.69
3083 5726 4.709397 TGAAGGCATTGGTATTACCCTTTG 59.291 41.667 10.37 6.44 37.50 2.77
3084 5727 4.941713 TGAAGGCATTGGTATTACCCTTT 58.058 39.130 10.37 0.00 37.50 3.11
3085 5728 4.601406 TGAAGGCATTGGTATTACCCTT 57.399 40.909 10.37 5.81 37.50 3.95
3086 5729 4.601406 TTGAAGGCATTGGTATTACCCT 57.399 40.909 10.37 0.00 37.50 4.34
3087 5730 4.892934 TGATTGAAGGCATTGGTATTACCC 59.107 41.667 10.37 0.00 37.50 3.69
3088 5731 6.655078 ATGATTGAAGGCATTGGTATTACC 57.345 37.500 5.87 5.87 39.22 2.85
3089 5732 7.014615 AGGAATGATTGAAGGCATTGGTATTAC 59.985 37.037 0.00 0.00 35.05 1.89
3090 5733 7.068702 AGGAATGATTGAAGGCATTGGTATTA 58.931 34.615 0.00 0.00 35.05 0.98
3091 5734 5.901276 AGGAATGATTGAAGGCATTGGTATT 59.099 36.000 0.00 0.00 35.05 1.89
3092 5735 5.461327 AGGAATGATTGAAGGCATTGGTAT 58.539 37.500 0.00 0.00 35.05 2.73
3093 5736 4.870636 AGGAATGATTGAAGGCATTGGTA 58.129 39.130 0.00 0.00 35.05 3.25
3094 5737 3.716431 AGGAATGATTGAAGGCATTGGT 58.284 40.909 0.00 0.00 35.05 3.67
3095 5738 4.404715 AGAAGGAATGATTGAAGGCATTGG 59.595 41.667 0.00 0.00 35.05 3.16
3096 5739 5.593679 AGAAGGAATGATTGAAGGCATTG 57.406 39.130 0.00 0.00 35.05 2.82
3097 5740 7.722949 TTAAGAAGGAATGATTGAAGGCATT 57.277 32.000 0.00 0.00 37.43 3.56
3098 5741 7.722949 TTTAAGAAGGAATGATTGAAGGCAT 57.277 32.000 0.00 0.00 0.00 4.40
3099 5742 7.537596 TTTTAAGAAGGAATGATTGAAGGCA 57.462 32.000 0.00 0.00 0.00 4.75
3100 5743 8.090831 AGTTTTTAAGAAGGAATGATTGAAGGC 58.909 33.333 0.00 0.00 0.00 4.35
3101 5744 9.987272 AAGTTTTTAAGAAGGAATGATTGAAGG 57.013 29.630 0.00 0.00 0.00 3.46
3103 5746 9.981114 GGAAGTTTTTAAGAAGGAATGATTGAA 57.019 29.630 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.