Multiple sequence alignment - TraesCS2D01G075400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G075400 chr2D 100.000 5902 0 0 1 5902 32279221 32285122 0.000000e+00 10900.0
1 TraesCS2D01G075400 chr2D 84.750 400 47 8 2755 3145 610849787 610849393 7.170000e-104 388.0
2 TraesCS2D01G075400 chr2D 91.200 250 20 2 617 864 76165026 76164777 7.330000e-89 339.0
3 TraesCS2D01G075400 chr2D 86.017 236 13 7 5637 5859 32291464 32291236 9.890000e-58 235.0
4 TraesCS2D01G075400 chr2D 86.395 147 17 3 3491 3635 74160169 74160314 2.200000e-34 158.0
5 TraesCS2D01G075400 chr2A 96.704 4915 97 15 857 5762 34503162 34498304 0.000000e+00 8118.0
6 TraesCS2D01G075400 chr2A 94.979 239 8 1 5664 5902 34505634 34505868 7.220000e-99 372.0
7 TraesCS2D01G075400 chr2A 87.251 251 16 4 5663 5901 34480397 34480643 7.540000e-69 272.0
8 TraesCS2D01G075400 chr2A 87.967 241 16 2 389 617 34503401 34503162 7.540000e-69 272.0
9 TraesCS2D01G075400 chr2A 90.148 203 8 1 5711 5901 34497813 34497611 2.730000e-63 254.0
10 TraesCS2D01G075400 chr2A 87.143 210 11 3 5662 5859 34515585 34515380 2.140000e-54 224.0
11 TraesCS2D01G075400 chr2B 92.364 2056 125 15 1118 3145 52906792 52908843 0.000000e+00 2898.0
12 TraesCS2D01G075400 chr2B 91.379 870 59 7 4169 5025 52909790 52910656 0.000000e+00 1177.0
13 TraesCS2D01G075400 chr2B 84.699 915 64 28 3092 3951 52908830 52909723 0.000000e+00 845.0
14 TraesCS2D01G075400 chr2B 80.467 942 129 24 1359 2250 53401013 53401949 0.000000e+00 669.0
15 TraesCS2D01G075400 chr2B 87.838 370 33 6 2 368 392615965 392615605 1.970000e-114 424.0
16 TraesCS2D01G075400 chr2B 87.601 371 32 7 2 369 512352453 512352094 9.150000e-113 418.0
17 TraesCS2D01G075400 chr2B 85.185 405 42 7 2755 3145 762242181 762241781 3.310000e-107 399.0
18 TraesCS2D01G075400 chr2B 83.733 375 53 6 1587 1958 53439443 53439812 1.220000e-91 348.0
19 TraesCS2D01G075400 chr2B 90.210 143 13 1 4415 4556 53441832 53441974 1.010000e-42 185.0
20 TraesCS2D01G075400 chr2B 87.970 133 13 3 3491 3621 667127396 667127265 2.850000e-33 154.0
21 TraesCS2D01G075400 chr2B 92.308 39 3 0 2344 2382 52907934 52907972 8.260000e-04 56.5
22 TraesCS2D01G075400 chr3A 79.084 808 95 45 2755 3502 644195667 644196460 6.870000e-134 488.0
23 TraesCS2D01G075400 chr3A 79.626 535 82 23 2769 3293 738042820 738042303 5.620000e-95 359.0
24 TraesCS2D01G075400 chr3A 81.203 133 14 8 3952 4081 325284395 325284519 4.870000e-16 97.1
25 TraesCS2D01G075400 chr7A 78.342 808 101 42 2755 3502 146754136 146754929 6.970000e-124 455.0
26 TraesCS2D01G075400 chr7A 87.297 370 35 6 2 368 507137515 507137875 4.260000e-111 412.0
27 TraesCS2D01G075400 chr7A 87.297 370 35 6 2 368 548067850 548067490 4.260000e-111 412.0
28 TraesCS2D01G075400 chr6D 89.218 371 29 7 2 369 387809890 387809528 2.510000e-123 453.0
29 TraesCS2D01G075400 chr6D 89.313 262 24 4 603 861 369457390 369457650 5.700000e-85 326.0
30 TraesCS2D01G075400 chr6D 83.893 149 20 4 3490 3635 81777000 81776853 7.980000e-29 139.0
31 TraesCS2D01G075400 chr5D 86.816 402 39 7 2756 3145 531657631 531657232 2.530000e-118 436.0
32 TraesCS2D01G075400 chr5D 87.313 134 13 4 3487 3618 110798916 110798785 3.680000e-32 150.0
33 TraesCS2D01G075400 chr7D 88.251 366 33 6 7 369 112158422 112158780 4.230000e-116 429.0
34 TraesCS2D01G075400 chr7D 75.522 335 53 22 2861 3186 84598491 84598805 2.870000e-28 137.0
35 TraesCS2D01G075400 chr3B 88.108 370 32 6 2 368 357772825 357773185 4.230000e-116 429.0
36 TraesCS2D01G075400 chr3B 87.738 367 36 5 2 368 676954093 676954450 2.540000e-113 420.0
37 TraesCS2D01G075400 chr3B 84.568 162 19 6 3492 3651 171165803 171165646 7.920000e-34 156.0
38 TraesCS2D01G075400 chr3B 88.710 124 11 3 3510 3631 443760951 443760829 1.330000e-31 148.0
39 TraesCS2D01G075400 chr3B 83.505 97 8 5 3988 4081 335839281 335839372 3.790000e-12 84.2
40 TraesCS2D01G075400 chr5B 88.251 366 31 6 2 364 546555367 546555723 1.520000e-115 427.0
41 TraesCS2D01G075400 chr5B 76.371 237 36 13 5664 5894 119163935 119164157 6.250000e-20 110.0
42 TraesCS2D01G075400 chr5A 79.505 566 77 17 2761 3291 11037358 11036797 3.360000e-97 366.0
43 TraesCS2D01G075400 chr4B 92.181 243 18 1 617 858 483749457 483749215 5.660000e-90 342.0
44 TraesCS2D01G075400 chr1D 90.421 261 22 3 617 874 213435980 213435720 2.040000e-89 340.0
45 TraesCS2D01G075400 chr1D 91.429 245 19 2 617 860 254094882 254095125 9.480000e-88 335.0
46 TraesCS2D01G075400 chr1D 86.047 129 16 2 3509 3635 445363158 445363030 2.870000e-28 137.0
47 TraesCS2D01G075400 chr1D 82.517 143 20 5 3493 3632 9775098 9774958 2.890000e-23 121.0
48 TraesCS2D01G075400 chr6B 91.803 244 19 1 616 858 625898782 625899025 7.330000e-89 339.0
49 TraesCS2D01G075400 chr4D 91.803 244 19 1 616 858 427174623 427174380 7.330000e-89 339.0
50 TraesCS2D01G075400 chr4D 88.806 268 25 4 602 865 331472143 331472409 2.050000e-84 324.0
51 TraesCS2D01G075400 chr4D 79.385 325 39 15 2918 3216 379498892 379498570 2.790000e-48 204.0
52 TraesCS2D01G075400 chr7B 79.675 492 77 14 2773 3248 632912371 632912855 3.410000e-87 333.0
53 TraesCS2D01G075400 chr3D 89.961 259 20 5 617 871 386877613 386877357 4.410000e-86 329.0
54 TraesCS2D01G075400 chr3D 81.443 194 19 10 5664 5845 24660947 24660759 6.170000e-30 143.0
55 TraesCS2D01G075400 chr3D 82.500 120 19 2 3509 3627 84114496 84114378 2.910000e-18 104.0
56 TraesCS2D01G075400 chr3D 81.955 133 14 7 3952 4081 264699114 264699239 2.910000e-18 104.0
57 TraesCS2D01G075400 chr4A 83.951 162 13 3 5692 5841 467236244 467236084 6.170000e-30 143.0
58 TraesCS2D01G075400 chr1B 87.805 123 12 3 3500 3620 607128440 607128319 2.220000e-29 141.0
59 TraesCS2D01G075400 chr1B 81.169 154 23 4 3487 3635 21381933 21381781 1.040000e-22 119.0
60 TraesCS2D01G075400 chr1B 80.519 154 24 4 3487 3635 21407302 21407150 4.830000e-21 113.0
61 TraesCS2D01G075400 chr6A 86.179 123 14 3 3509 3629 36493724 36493603 4.800000e-26 130.0
62 TraesCS2D01G075400 chr6A 85.246 122 14 4 3509 3627 22296239 22296119 8.030000e-24 122.0
63 TraesCS2D01G075400 chr1A 82.877 146 22 3 3491 3635 20367608 20367751 1.730000e-25 128.0
64 TraesCS2D01G075400 chr1A 86.842 114 12 3 3520 3632 293740745 293740856 2.230000e-24 124.0
65 TraesCS2D01G075400 chr1A 84.466 103 8 8 3529 3628 43953517 43953614 1.750000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G075400 chr2D 32279221 32285122 5901 False 10900.000000 10900 100.000000 1 5902 1 chr2D.!!$F1 5901
1 TraesCS2D01G075400 chr2A 34497611 34503401 5790 True 2881.333333 8118 91.606333 389 5901 3 chr2A.!!$R2 5512
2 TraesCS2D01G075400 chr2B 52906792 52910656 3864 False 1244.125000 2898 90.187500 1118 5025 4 chr2B.!!$F2 3907
3 TraesCS2D01G075400 chr2B 53401013 53401949 936 False 669.000000 669 80.467000 1359 2250 1 chr2B.!!$F1 891
4 TraesCS2D01G075400 chr2B 53439443 53441974 2531 False 266.500000 348 86.971500 1587 4556 2 chr2B.!!$F3 2969
5 TraesCS2D01G075400 chr3A 644195667 644196460 793 False 488.000000 488 79.084000 2755 3502 1 chr3A.!!$F2 747
6 TraesCS2D01G075400 chr3A 738042303 738042820 517 True 359.000000 359 79.626000 2769 3293 1 chr3A.!!$R1 524
7 TraesCS2D01G075400 chr7A 146754136 146754929 793 False 455.000000 455 78.342000 2755 3502 1 chr7A.!!$F1 747
8 TraesCS2D01G075400 chr5A 11036797 11037358 561 True 366.000000 366 79.505000 2761 3291 1 chr5A.!!$R1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
742 755 0.031010 GGAGAGGGGTGTGGGTATCT 60.031 60.000 0.00 0.0 0.00 1.98 F
1019 1036 0.246635 ATCTCGTGGACTTTCACCGG 59.753 55.000 0.00 0.0 34.36 5.28 F
2723 4464 0.524604 AAACGCACAAACAGAACCGC 60.525 50.000 0.00 0.0 0.00 5.68 F
4051 5922 1.213430 CCAAAATACGAGGGGGCCTAA 59.787 52.381 0.84 0.0 31.76 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1590 1616 1.959085 CACCACATTGGACAGGTGC 59.041 57.895 0.00 0.0 44.25 5.01 R
2744 4486 2.032302 TCGCAAAGCACGCTAAGAAAAA 59.968 40.909 0.00 0.0 0.00 1.94 R
4123 5994 1.529744 ACTCCCTCCTTCCCAAAACA 58.470 50.000 0.00 0.0 0.00 2.83 R
5722 8149 0.389817 TTGGAGCGATCCACAAGTCG 60.390 55.000 24.58 0.0 39.90 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.043419 CGCTCCTACCGGATCTGG 58.957 66.667 19.66 19.66 39.01 3.86
36 37 1.528542 CGCTCCTACCGGATCTGGA 60.529 63.158 27.90 9.83 39.01 3.86
37 38 0.896019 CGCTCCTACCGGATCTGGAT 60.896 60.000 27.90 13.52 39.01 3.41
38 39 0.892063 GCTCCTACCGGATCTGGATC 59.108 60.000 27.90 1.60 39.01 3.36
39 40 1.169577 CTCCTACCGGATCTGGATCG 58.830 60.000 27.90 13.52 39.01 3.69
40 41 0.769247 TCCTACCGGATCTGGATCGA 59.231 55.000 27.90 14.70 38.69 3.59
41 42 1.169577 CCTACCGGATCTGGATCGAG 58.830 60.000 27.90 16.37 38.69 4.04
42 43 0.523966 CTACCGGATCTGGATCGAGC 59.476 60.000 27.90 0.00 38.69 5.03
43 44 0.894184 TACCGGATCTGGATCGAGCC 60.894 60.000 27.90 14.17 38.69 4.70
45 46 3.765051 GGATCTGGATCGAGCCGA 58.235 61.111 16.16 15.34 41.13 5.54
46 47 1.287503 GGATCTGGATCGAGCCGAC 59.712 63.158 16.16 5.99 39.18 4.79
47 48 1.081774 GATCTGGATCGAGCCGACG 60.082 63.158 16.16 6.17 39.18 5.12
48 49 3.200887 ATCTGGATCGAGCCGACGC 62.201 63.158 16.16 0.00 39.18 5.19
49 50 4.933064 CTGGATCGAGCCGACGCC 62.933 72.222 16.16 5.64 39.18 5.68
51 52 4.286320 GGATCGAGCCGACGCCAT 62.286 66.667 2.80 0.00 39.18 4.40
52 53 2.731348 GATCGAGCCGACGCCATC 60.731 66.667 0.00 0.00 39.18 3.51
53 54 3.484742 GATCGAGCCGACGCCATCA 62.485 63.158 0.00 0.00 39.18 3.07
54 55 3.774959 ATCGAGCCGACGCCATCAC 62.775 63.158 0.00 0.00 39.18 3.06
56 57 4.451150 GAGCCGACGCCATCACCA 62.451 66.667 0.00 0.00 34.57 4.17
57 58 4.760047 AGCCGACGCCATCACCAC 62.760 66.667 0.00 0.00 34.57 4.16
59 60 2.125147 CCGACGCCATCACCACAT 60.125 61.111 0.00 0.00 0.00 3.21
60 61 1.745115 CCGACGCCATCACCACATT 60.745 57.895 0.00 0.00 0.00 2.71
61 62 0.461163 CCGACGCCATCACCACATTA 60.461 55.000 0.00 0.00 0.00 1.90
62 63 0.930310 CGACGCCATCACCACATTAG 59.070 55.000 0.00 0.00 0.00 1.73
63 64 0.657840 GACGCCATCACCACATTAGC 59.342 55.000 0.00 0.00 0.00 3.09
64 65 0.748005 ACGCCATCACCACATTAGCC 60.748 55.000 0.00 0.00 0.00 3.93
65 66 1.775039 CGCCATCACCACATTAGCCG 61.775 60.000 0.00 0.00 0.00 5.52
66 67 0.463654 GCCATCACCACATTAGCCGA 60.464 55.000 0.00 0.00 0.00 5.54
67 68 1.586422 CCATCACCACATTAGCCGAG 58.414 55.000 0.00 0.00 0.00 4.63
68 69 0.940126 CATCACCACATTAGCCGAGC 59.060 55.000 0.00 0.00 0.00 5.03
69 70 0.541392 ATCACCACATTAGCCGAGCA 59.459 50.000 0.00 0.00 0.00 4.26
70 71 0.391130 TCACCACATTAGCCGAGCAC 60.391 55.000 0.00 0.00 0.00 4.40
71 72 1.078426 ACCACATTAGCCGAGCACC 60.078 57.895 0.00 0.00 0.00 5.01
72 73 1.078497 CCACATTAGCCGAGCACCA 60.078 57.895 0.00 0.00 0.00 4.17
73 74 1.369091 CCACATTAGCCGAGCACCAC 61.369 60.000 0.00 0.00 0.00 4.16
74 75 1.078426 ACATTAGCCGAGCACCACC 60.078 57.895 0.00 0.00 0.00 4.61
75 76 2.173669 CATTAGCCGAGCACCACCG 61.174 63.158 0.00 0.00 0.00 4.94
76 77 2.355986 ATTAGCCGAGCACCACCGA 61.356 57.895 0.00 0.00 0.00 4.69
77 78 1.895020 ATTAGCCGAGCACCACCGAA 61.895 55.000 0.00 0.00 0.00 4.30
78 79 2.501223 TTAGCCGAGCACCACCGAAG 62.501 60.000 0.00 0.00 0.00 3.79
80 81 4.680237 CCGAGCACCACCGAAGCA 62.680 66.667 0.00 0.00 0.00 3.91
81 82 3.414700 CGAGCACCACCGAAGCAC 61.415 66.667 0.00 0.00 0.00 4.40
82 83 2.280797 GAGCACCACCGAAGCACA 60.281 61.111 0.00 0.00 0.00 4.57
83 84 1.891919 GAGCACCACCGAAGCACAA 60.892 57.895 0.00 0.00 0.00 3.33
84 85 2.117941 GAGCACCACCGAAGCACAAC 62.118 60.000 0.00 0.00 0.00 3.32
85 86 3.030652 CACCACCGAAGCACAACC 58.969 61.111 0.00 0.00 0.00 3.77
86 87 1.821759 CACCACCGAAGCACAACCA 60.822 57.895 0.00 0.00 0.00 3.67
87 88 1.077357 ACCACCGAAGCACAACCAA 60.077 52.632 0.00 0.00 0.00 3.67
88 89 0.467290 ACCACCGAAGCACAACCAAT 60.467 50.000 0.00 0.00 0.00 3.16
89 90 0.240945 CCACCGAAGCACAACCAATC 59.759 55.000 0.00 0.00 0.00 2.67
90 91 0.950836 CACCGAAGCACAACCAATCA 59.049 50.000 0.00 0.00 0.00 2.57
91 92 0.951558 ACCGAAGCACAACCAATCAC 59.048 50.000 0.00 0.00 0.00 3.06
92 93 0.110238 CCGAAGCACAACCAATCACG 60.110 55.000 0.00 0.00 0.00 4.35
93 94 0.725784 CGAAGCACAACCAATCACGC 60.726 55.000 0.00 0.00 0.00 5.34
94 95 0.387239 GAAGCACAACCAATCACGCC 60.387 55.000 0.00 0.00 0.00 5.68
95 96 1.106351 AAGCACAACCAATCACGCCA 61.106 50.000 0.00 0.00 0.00 5.69
96 97 1.371635 GCACAACCAATCACGCCAC 60.372 57.895 0.00 0.00 0.00 5.01
97 98 1.285641 CACAACCAATCACGCCACC 59.714 57.895 0.00 0.00 0.00 4.61
98 99 1.152860 ACAACCAATCACGCCACCA 60.153 52.632 0.00 0.00 0.00 4.17
99 100 1.172180 ACAACCAATCACGCCACCAG 61.172 55.000 0.00 0.00 0.00 4.00
100 101 2.268076 AACCAATCACGCCACCAGC 61.268 57.895 0.00 0.00 38.52 4.85
101 102 2.672651 CCAATCACGCCACCAGCA 60.673 61.111 0.00 0.00 44.04 4.41
102 103 2.562912 CAATCACGCCACCAGCAC 59.437 61.111 0.00 0.00 44.04 4.40
103 104 3.049674 AATCACGCCACCAGCACG 61.050 61.111 0.00 0.00 44.04 5.34
129 130 3.274586 CCATCACCTGCGCCGATG 61.275 66.667 4.18 11.75 36.99 3.84
130 131 2.202919 CATCACCTGCGCCGATGA 60.203 61.111 16.66 9.18 39.09 2.92
131 132 2.107750 ATCACCTGCGCCGATGAG 59.892 61.111 4.18 0.00 0.00 2.90
132 133 3.451556 ATCACCTGCGCCGATGAGG 62.452 63.158 4.18 7.13 44.97 3.86
164 165 4.162690 GCCCCGCGAGAACTCCAT 62.163 66.667 8.23 0.00 0.00 3.41
165 166 2.202932 CCCCGCGAGAACTCCATG 60.203 66.667 8.23 0.00 0.00 3.66
166 167 2.721167 CCCCGCGAGAACTCCATGA 61.721 63.158 8.23 0.00 0.00 3.07
167 168 1.519455 CCCGCGAGAACTCCATGAC 60.519 63.158 8.23 0.00 0.00 3.06
168 169 1.519455 CCGCGAGAACTCCATGACC 60.519 63.158 8.23 0.00 0.00 4.02
169 170 1.215382 CGCGAGAACTCCATGACCA 59.785 57.895 0.00 0.00 0.00 4.02
170 171 0.803768 CGCGAGAACTCCATGACCAG 60.804 60.000 0.00 0.00 0.00 4.00
171 172 0.532573 GCGAGAACTCCATGACCAGA 59.467 55.000 0.00 0.00 0.00 3.86
172 173 1.137872 GCGAGAACTCCATGACCAGAT 59.862 52.381 0.00 0.00 0.00 2.90
173 174 2.801342 GCGAGAACTCCATGACCAGATC 60.801 54.545 0.00 0.00 0.00 2.75
174 175 2.223923 CGAGAACTCCATGACCAGATCC 60.224 54.545 0.00 0.00 0.00 3.36
175 176 2.768527 GAGAACTCCATGACCAGATCCA 59.231 50.000 0.00 0.00 0.00 3.41
176 177 2.770802 AGAACTCCATGACCAGATCCAG 59.229 50.000 0.00 0.00 0.00 3.86
177 178 1.504912 ACTCCATGACCAGATCCAGG 58.495 55.000 0.00 0.40 0.00 4.45
178 179 1.274069 ACTCCATGACCAGATCCAGGT 60.274 52.381 7.14 7.14 43.46 4.00
183 184 3.732938 ACCAGATCCAGGTCTGCC 58.267 61.111 2.19 0.00 43.36 4.85
184 185 2.362369 ACCAGATCCAGGTCTGCCG 61.362 63.158 2.19 0.00 43.36 5.69
185 186 2.503061 CAGATCCAGGTCTGCCGG 59.497 66.667 0.00 0.00 39.19 6.13
186 187 3.474570 AGATCCAGGTCTGCCGGC 61.475 66.667 22.73 22.73 40.50 6.13
187 188 4.554036 GATCCAGGTCTGCCGGCC 62.554 72.222 26.77 8.57 40.50 6.13
208 209 4.101448 GTCAGCCCTCCCGCATGT 62.101 66.667 0.00 0.00 0.00 3.21
209 210 4.100084 TCAGCCCTCCCGCATGTG 62.100 66.667 0.00 0.00 0.00 3.21
220 221 3.561429 GCATGTGGCGAACGAAGA 58.439 55.556 0.00 0.00 0.00 2.87
221 222 2.089854 GCATGTGGCGAACGAAGAT 58.910 52.632 0.00 0.00 0.00 2.40
222 223 0.247814 GCATGTGGCGAACGAAGATG 60.248 55.000 0.00 1.42 0.00 2.90
223 224 0.247814 CATGTGGCGAACGAAGATGC 60.248 55.000 0.00 0.00 0.00 3.91
226 227 3.202706 GGCGAACGAAGATGCCCC 61.203 66.667 0.00 0.00 41.70 5.80
227 228 3.564027 GCGAACGAAGATGCCCCG 61.564 66.667 0.00 0.00 0.00 5.73
228 229 3.564027 CGAACGAAGATGCCCCGC 61.564 66.667 0.00 0.00 0.00 6.13
229 230 3.202706 GAACGAAGATGCCCCGCC 61.203 66.667 0.00 0.00 0.00 6.13
295 296 4.598894 CGGCGGCAGGAGGATGAG 62.599 72.222 10.53 0.00 0.00 2.90
296 297 4.247380 GGCGGCAGGAGGATGAGG 62.247 72.222 3.07 0.00 0.00 3.86
297 298 3.157252 GCGGCAGGAGGATGAGGA 61.157 66.667 0.00 0.00 0.00 3.71
298 299 3.136750 CGGCAGGAGGATGAGGAG 58.863 66.667 0.00 0.00 0.00 3.69
299 300 1.456518 CGGCAGGAGGATGAGGAGA 60.457 63.158 0.00 0.00 0.00 3.71
300 301 1.462731 CGGCAGGAGGATGAGGAGAG 61.463 65.000 0.00 0.00 0.00 3.20
301 302 1.120795 GGCAGGAGGATGAGGAGAGG 61.121 65.000 0.00 0.00 0.00 3.69
302 303 0.105760 GCAGGAGGATGAGGAGAGGA 60.106 60.000 0.00 0.00 0.00 3.71
303 304 1.999648 CAGGAGGATGAGGAGAGGAG 58.000 60.000 0.00 0.00 0.00 3.69
304 305 1.498576 CAGGAGGATGAGGAGAGGAGA 59.501 57.143 0.00 0.00 0.00 3.71
305 306 1.782752 AGGAGGATGAGGAGAGGAGAG 59.217 57.143 0.00 0.00 0.00 3.20
306 307 1.203050 GGAGGATGAGGAGAGGAGAGG 60.203 61.905 0.00 0.00 0.00 3.69
307 308 1.499007 GAGGATGAGGAGAGGAGAGGT 59.501 57.143 0.00 0.00 0.00 3.85
308 309 1.217689 AGGATGAGGAGAGGAGAGGTG 59.782 57.143 0.00 0.00 0.00 4.00
309 310 1.703411 GATGAGGAGAGGAGAGGTGG 58.297 60.000 0.00 0.00 0.00 4.61
310 311 1.014804 ATGAGGAGAGGAGAGGTGGT 58.985 55.000 0.00 0.00 0.00 4.16
311 312 0.040351 TGAGGAGAGGAGAGGTGGTG 59.960 60.000 0.00 0.00 0.00 4.17
312 313 0.333312 GAGGAGAGGAGAGGTGGTGA 59.667 60.000 0.00 0.00 0.00 4.02
313 314 0.334676 AGGAGAGGAGAGGTGGTGAG 59.665 60.000 0.00 0.00 0.00 3.51
314 315 0.686112 GGAGAGGAGAGGTGGTGAGG 60.686 65.000 0.00 0.00 0.00 3.86
315 316 1.305718 AGAGGAGAGGTGGTGAGGC 60.306 63.158 0.00 0.00 0.00 4.70
316 317 2.681778 AGGAGAGGTGGTGAGGCG 60.682 66.667 0.00 0.00 0.00 5.52
317 318 3.775654 GGAGAGGTGGTGAGGCGG 61.776 72.222 0.00 0.00 0.00 6.13
318 319 4.459089 GAGAGGTGGTGAGGCGGC 62.459 72.222 0.00 0.00 0.00 6.53
334 335 4.525949 GCCGACGGCTAGGGTTCC 62.526 72.222 31.30 0.00 46.69 3.62
335 336 2.758737 CCGACGGCTAGGGTTCCT 60.759 66.667 0.00 0.00 37.71 3.36
336 337 2.783288 CCGACGGCTAGGGTTCCTC 61.783 68.421 0.00 0.00 34.61 3.71
337 338 2.783288 CGACGGCTAGGGTTCCTCC 61.783 68.421 0.00 0.00 34.61 4.30
368 369 3.535962 GGAGCGCCAGAGGAGGAG 61.536 72.222 2.29 0.00 0.00 3.69
369 370 2.757917 GAGCGCCAGAGGAGGAGT 60.758 66.667 2.29 0.00 0.00 3.85
370 371 2.757917 AGCGCCAGAGGAGGAGTC 60.758 66.667 2.29 0.00 0.00 3.36
371 372 2.757917 GCGCCAGAGGAGGAGTCT 60.758 66.667 0.00 0.00 0.00 3.24
372 373 2.355193 GCGCCAGAGGAGGAGTCTT 61.355 63.158 0.00 0.00 0.00 3.01
373 374 1.893919 GCGCCAGAGGAGGAGTCTTT 61.894 60.000 0.00 0.00 0.00 2.52
374 375 0.610687 CGCCAGAGGAGGAGTCTTTT 59.389 55.000 0.00 0.00 0.00 2.27
375 376 1.002544 CGCCAGAGGAGGAGTCTTTTT 59.997 52.381 0.00 0.00 0.00 1.94
376 377 2.705730 GCCAGAGGAGGAGTCTTTTTC 58.294 52.381 0.00 0.00 0.00 2.29
377 378 2.933056 GCCAGAGGAGGAGTCTTTTTCG 60.933 54.545 0.00 0.00 0.00 3.46
378 379 2.300437 CCAGAGGAGGAGTCTTTTTCGT 59.700 50.000 0.00 0.00 0.00 3.85
379 380 3.580731 CAGAGGAGGAGTCTTTTTCGTC 58.419 50.000 0.00 0.00 0.00 4.20
380 381 2.563620 AGAGGAGGAGTCTTTTTCGTCC 59.436 50.000 5.99 5.99 45.49 4.79
381 382 2.299297 GAGGAGGAGTCTTTTTCGTCCA 59.701 50.000 14.24 0.00 46.81 4.02
382 383 2.037381 AGGAGGAGTCTTTTTCGTCCAC 59.963 50.000 14.24 0.00 46.81 4.02
383 384 2.059541 GAGGAGTCTTTTTCGTCCACG 58.940 52.381 0.00 0.00 41.45 4.94
384 385 5.409890 GGAGGAGTCTTTTTCGTCCACGA 62.410 52.174 0.00 0.00 44.85 4.35
401 402 2.600470 AACCCTTGGCCGGCTTTC 60.600 61.111 28.56 10.74 0.00 2.62
421 422 2.674754 GAGGTCGCATCCCCCAAA 59.325 61.111 0.00 0.00 0.00 3.28
431 432 1.800229 ATCCCCCAAACCCACACTCC 61.800 60.000 0.00 0.00 0.00 3.85
471 472 2.960129 GTATCGGCGGTGGCTTCG 60.960 66.667 7.21 0.00 39.81 3.79
540 553 1.918293 TTCCAGTGAGGGCATCGGT 60.918 57.895 0.00 0.00 38.24 4.69
549 562 2.731571 GGGCATCGGTGGAGTAGCA 61.732 63.158 0.00 0.00 0.00 3.49
554 567 0.757188 ATCGGTGGAGTAGCAGAGGG 60.757 60.000 0.00 0.00 0.00 4.30
562 575 1.222113 GTAGCAGAGGGGTTGAGGC 59.778 63.158 0.00 0.00 0.00 4.70
570 583 4.096003 GGGTTGAGGCGGCTGCTA 62.096 66.667 19.63 2.09 42.25 3.49
598 611 1.575447 GCCCTCCCTGGAGTTGGATT 61.575 60.000 12.09 0.00 40.44 3.01
612 625 6.148811 TGGAGTTGGATTCGTGTCTTTTAATC 59.851 38.462 0.00 0.00 0.00 1.75
616 629 5.722263 TGGATTCGTGTCTTTTAATCGGTA 58.278 37.500 0.00 0.00 30.67 4.02
617 630 5.577945 TGGATTCGTGTCTTTTAATCGGTAC 59.422 40.000 0.00 0.00 30.67 3.34
618 631 5.809051 GGATTCGTGTCTTTTAATCGGTACT 59.191 40.000 0.00 0.00 30.67 2.73
619 632 6.974622 GGATTCGTGTCTTTTAATCGGTACTA 59.025 38.462 0.00 0.00 30.67 1.82
620 633 7.167136 GGATTCGTGTCTTTTAATCGGTACTAG 59.833 40.741 0.00 0.00 30.67 2.57
621 634 5.335127 TCGTGTCTTTTAATCGGTACTAGC 58.665 41.667 0.00 0.00 0.00 3.42
622 635 5.097529 CGTGTCTTTTAATCGGTACTAGCA 58.902 41.667 0.00 0.00 0.00 3.49
623 636 5.574055 CGTGTCTTTTAATCGGTACTAGCAA 59.426 40.000 0.00 0.00 0.00 3.91
624 637 6.089820 CGTGTCTTTTAATCGGTACTAGCAAA 59.910 38.462 0.00 0.00 0.00 3.68
625 638 7.359431 CGTGTCTTTTAATCGGTACTAGCAAAA 60.359 37.037 0.00 0.00 0.00 2.44
626 639 8.448615 GTGTCTTTTAATCGGTACTAGCAAAAT 58.551 33.333 0.00 0.00 0.00 1.82
627 640 8.447833 TGTCTTTTAATCGGTACTAGCAAAATG 58.552 33.333 0.00 0.00 0.00 2.32
628 641 8.448615 GTCTTTTAATCGGTACTAGCAAAATGT 58.551 33.333 0.00 0.00 0.00 2.71
629 642 8.662141 TCTTTTAATCGGTACTAGCAAAATGTC 58.338 33.333 0.00 0.00 0.00 3.06
630 643 6.913873 TTAATCGGTACTAGCAAAATGTCC 57.086 37.500 0.00 0.00 0.00 4.02
631 644 3.965379 TCGGTACTAGCAAAATGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
632 645 4.481368 TCGGTACTAGCAAAATGTCCAT 57.519 40.909 0.00 0.00 0.00 3.41
633 646 4.188462 TCGGTACTAGCAAAATGTCCATG 58.812 43.478 0.00 0.00 0.00 3.66
634 647 3.242739 CGGTACTAGCAAAATGTCCATGC 60.243 47.826 0.00 0.00 40.34 4.06
635 648 3.242739 GGTACTAGCAAAATGTCCATGCG 60.243 47.826 0.00 0.00 44.60 4.73
636 649 2.436417 ACTAGCAAAATGTCCATGCGT 58.564 42.857 0.00 0.00 44.60 5.24
637 650 2.819608 ACTAGCAAAATGTCCATGCGTT 59.180 40.909 0.00 0.00 44.60 4.84
638 651 2.068837 AGCAAAATGTCCATGCGTTG 57.931 45.000 0.00 0.00 44.60 4.10
639 652 0.439600 GCAAAATGTCCATGCGTTGC 59.560 50.000 7.43 7.43 35.13 4.17
640 653 1.780806 CAAAATGTCCATGCGTTGCA 58.219 45.000 0.00 0.00 44.86 4.08
641 654 1.456544 CAAAATGTCCATGCGTTGCAC 59.543 47.619 0.00 0.00 43.04 4.57
642 655 0.387112 AAATGTCCATGCGTTGCACG 60.387 50.000 0.00 4.61 43.04 5.34
643 656 2.198906 AATGTCCATGCGTTGCACGG 62.199 55.000 0.00 0.00 43.82 4.94
646 659 2.126888 CCATGCGTTGCACGGAAC 60.127 61.111 0.00 0.00 45.44 3.62
647 660 2.636462 CATGCGTTGCACGGAACA 59.364 55.556 6.93 0.00 46.78 3.18
648 661 1.209898 CATGCGTTGCACGGAACAT 59.790 52.632 6.93 2.04 46.78 2.71
649 662 0.794229 CATGCGTTGCACGGAACATC 60.794 55.000 6.93 0.00 46.78 3.06
650 663 1.233950 ATGCGTTGCACGGAACATCA 61.234 50.000 6.93 0.00 46.78 3.07
651 664 1.281353 GCGTTGCACGGAACATCAA 59.719 52.632 10.02 0.00 42.82 2.57
652 665 0.725784 GCGTTGCACGGAACATCAAG 60.726 55.000 10.02 0.00 42.82 3.02
653 666 0.865111 CGTTGCACGGAACATCAAGA 59.135 50.000 2.31 0.00 38.08 3.02
654 667 1.464608 CGTTGCACGGAACATCAAGAT 59.535 47.619 2.31 0.00 38.08 2.40
655 668 2.725759 CGTTGCACGGAACATCAAGATG 60.726 50.000 8.45 8.45 40.19 2.90
656 669 0.804364 TGCACGGAACATCAAGATGC 59.196 50.000 9.85 0.00 42.39 3.91
657 670 0.804364 GCACGGAACATCAAGATGCA 59.196 50.000 9.85 0.00 42.39 3.96
658 671 1.402968 GCACGGAACATCAAGATGCAT 59.597 47.619 9.85 0.00 42.39 3.96
659 672 2.159338 GCACGGAACATCAAGATGCATT 60.159 45.455 9.85 0.00 42.39 3.56
660 673 3.674138 GCACGGAACATCAAGATGCATTT 60.674 43.478 9.85 0.00 42.39 2.32
661 674 3.855379 CACGGAACATCAAGATGCATTTG 59.145 43.478 9.85 7.88 42.39 2.32
662 675 3.507233 ACGGAACATCAAGATGCATTTGT 59.493 39.130 9.85 0.00 42.39 2.83
663 676 4.699735 ACGGAACATCAAGATGCATTTGTA 59.300 37.500 9.85 0.00 42.39 2.41
664 677 5.357878 ACGGAACATCAAGATGCATTTGTAT 59.642 36.000 9.85 1.80 42.39 2.29
665 678 5.684184 CGGAACATCAAGATGCATTTGTATG 59.316 40.000 9.85 13.57 42.39 2.39
666 679 6.458615 CGGAACATCAAGATGCATTTGTATGA 60.459 38.462 22.17 15.31 42.39 2.15
667 680 6.916387 GGAACATCAAGATGCATTTGTATGAG 59.084 38.462 22.17 12.56 42.39 2.90
668 681 7.400599 AACATCAAGATGCATTTGTATGAGT 57.599 32.000 22.17 12.92 42.39 3.41
669 682 8.510243 AACATCAAGATGCATTTGTATGAGTA 57.490 30.769 22.17 8.59 42.39 2.59
670 683 8.151141 ACATCAAGATGCATTTGTATGAGTAG 57.849 34.615 22.17 12.72 42.39 2.57
671 684 7.772292 ACATCAAGATGCATTTGTATGAGTAGT 59.228 33.333 22.17 13.08 42.39 2.73
672 685 8.618677 CATCAAGATGCATTTGTATGAGTAGTT 58.381 33.333 0.00 0.00 33.37 2.24
673 686 8.565896 TCAAGATGCATTTGTATGAGTAGTTT 57.434 30.769 0.00 0.00 33.37 2.66
674 687 9.665719 TCAAGATGCATTTGTATGAGTAGTTTA 57.334 29.630 0.00 0.00 33.37 2.01
680 693 9.448438 TGCATTTGTATGAGTAGTTTATCTTGT 57.552 29.630 0.00 0.00 33.37 3.16
681 694 9.708222 GCATTTGTATGAGTAGTTTATCTTGTG 57.292 33.333 0.00 0.00 33.37 3.33
683 696 8.786826 TTTGTATGAGTAGTTTATCTTGTGGG 57.213 34.615 0.00 0.00 0.00 4.61
684 697 7.727578 TGTATGAGTAGTTTATCTTGTGGGA 57.272 36.000 0.00 0.00 0.00 4.37
685 698 7.782049 TGTATGAGTAGTTTATCTTGTGGGAG 58.218 38.462 0.00 0.00 0.00 4.30
686 699 7.618117 TGTATGAGTAGTTTATCTTGTGGGAGA 59.382 37.037 0.00 0.00 0.00 3.71
687 700 6.928348 TGAGTAGTTTATCTTGTGGGAGAA 57.072 37.500 0.00 0.00 0.00 2.87
688 701 7.311092 TGAGTAGTTTATCTTGTGGGAGAAA 57.689 36.000 0.00 0.00 0.00 2.52
689 702 7.741785 TGAGTAGTTTATCTTGTGGGAGAAAA 58.258 34.615 0.00 0.00 29.99 2.29
690 703 7.878127 TGAGTAGTTTATCTTGTGGGAGAAAAG 59.122 37.037 0.00 0.00 29.99 2.27
691 704 7.168905 AGTAGTTTATCTTGTGGGAGAAAAGG 58.831 38.462 0.00 0.00 29.99 3.11
692 705 6.200878 AGTTTATCTTGTGGGAGAAAAGGA 57.799 37.500 0.00 0.00 29.99 3.36
693 706 6.794534 AGTTTATCTTGTGGGAGAAAAGGAT 58.205 36.000 0.00 0.00 29.99 3.24
694 707 6.660949 AGTTTATCTTGTGGGAGAAAAGGATG 59.339 38.462 0.00 0.00 29.99 3.51
695 708 4.934797 ATCTTGTGGGAGAAAAGGATGA 57.065 40.909 0.00 0.00 0.00 2.92
696 709 4.722526 TCTTGTGGGAGAAAAGGATGAA 57.277 40.909 0.00 0.00 0.00 2.57
697 710 5.261040 TCTTGTGGGAGAAAAGGATGAAT 57.739 39.130 0.00 0.00 0.00 2.57
698 711 5.012239 TCTTGTGGGAGAAAAGGATGAATG 58.988 41.667 0.00 0.00 0.00 2.67
699 712 4.656100 TGTGGGAGAAAAGGATGAATGA 57.344 40.909 0.00 0.00 0.00 2.57
700 713 4.592942 TGTGGGAGAAAAGGATGAATGAG 58.407 43.478 0.00 0.00 0.00 2.90
701 714 3.950395 GTGGGAGAAAAGGATGAATGAGG 59.050 47.826 0.00 0.00 0.00 3.86
702 715 3.053395 TGGGAGAAAAGGATGAATGAGGG 60.053 47.826 0.00 0.00 0.00 4.30
703 716 3.203040 GGGAGAAAAGGATGAATGAGGGA 59.797 47.826 0.00 0.00 0.00 4.20
704 717 4.325344 GGGAGAAAAGGATGAATGAGGGAA 60.325 45.833 0.00 0.00 0.00 3.97
705 718 4.886489 GGAGAAAAGGATGAATGAGGGAAG 59.114 45.833 0.00 0.00 0.00 3.46
706 719 4.864726 AGAAAAGGATGAATGAGGGAAGG 58.135 43.478 0.00 0.00 0.00 3.46
707 720 2.744352 AAGGATGAATGAGGGAAGGC 57.256 50.000 0.00 0.00 0.00 4.35
708 721 0.849417 AGGATGAATGAGGGAAGGCC 59.151 55.000 0.00 0.00 0.00 5.19
709 722 0.849417 GGATGAATGAGGGAAGGCCT 59.151 55.000 0.00 0.00 0.00 5.19
710 723 1.216427 GGATGAATGAGGGAAGGCCTT 59.784 52.381 20.65 20.65 0.00 4.35
711 724 2.443255 GGATGAATGAGGGAAGGCCTTA 59.557 50.000 20.54 1.80 0.00 2.69
712 725 3.075134 GGATGAATGAGGGAAGGCCTTAT 59.925 47.826 20.54 7.60 0.00 1.73
713 726 4.448347 GGATGAATGAGGGAAGGCCTTATT 60.448 45.833 20.54 14.22 0.00 1.40
714 727 4.608170 TGAATGAGGGAAGGCCTTATTT 57.392 40.909 20.54 6.38 0.00 1.40
715 728 4.280819 TGAATGAGGGAAGGCCTTATTTG 58.719 43.478 20.54 0.00 0.00 2.32
716 729 2.143876 TGAGGGAAGGCCTTATTTGC 57.856 50.000 20.54 5.12 0.00 3.68
717 730 1.357420 TGAGGGAAGGCCTTATTTGCA 59.643 47.619 20.54 10.57 0.00 4.08
718 731 2.225242 TGAGGGAAGGCCTTATTTGCAA 60.225 45.455 20.54 0.00 0.00 4.08
719 732 2.831526 GAGGGAAGGCCTTATTTGCAAA 59.168 45.455 20.54 15.44 0.00 3.68
720 733 3.452264 GAGGGAAGGCCTTATTTGCAAAT 59.548 43.478 26.72 26.72 0.00 2.32
721 734 3.198417 AGGGAAGGCCTTATTTGCAAATG 59.802 43.478 30.43 17.22 0.00 2.32
722 735 3.055167 GGGAAGGCCTTATTTGCAAATGT 60.055 43.478 30.43 12.33 0.00 2.71
723 736 3.934579 GGAAGGCCTTATTTGCAAATGTG 59.065 43.478 30.43 21.90 0.00 3.21
724 737 3.615224 AGGCCTTATTTGCAAATGTGG 57.385 42.857 30.43 28.46 0.00 4.17
725 738 3.172339 AGGCCTTATTTGCAAATGTGGA 58.828 40.909 31.67 15.77 0.00 4.02
726 739 3.196254 AGGCCTTATTTGCAAATGTGGAG 59.804 43.478 31.67 23.26 0.00 3.86
727 740 3.195396 GGCCTTATTTGCAAATGTGGAGA 59.805 43.478 31.67 14.88 0.00 3.71
728 741 4.427312 GCCTTATTTGCAAATGTGGAGAG 58.573 43.478 31.67 20.39 0.00 3.20
729 742 4.678840 GCCTTATTTGCAAATGTGGAGAGG 60.679 45.833 31.67 25.73 0.00 3.69
730 743 4.142093 CCTTATTTGCAAATGTGGAGAGGG 60.142 45.833 30.43 17.11 0.00 4.30
731 744 1.631405 TTTGCAAATGTGGAGAGGGG 58.369 50.000 8.05 0.00 0.00 4.79
732 745 0.482446 TTGCAAATGTGGAGAGGGGT 59.518 50.000 0.00 0.00 0.00 4.95
733 746 0.251297 TGCAAATGTGGAGAGGGGTG 60.251 55.000 0.00 0.00 0.00 4.61
734 747 0.251341 GCAAATGTGGAGAGGGGTGT 60.251 55.000 0.00 0.00 0.00 4.16
735 748 1.538047 CAAATGTGGAGAGGGGTGTG 58.462 55.000 0.00 0.00 0.00 3.82
736 749 0.405585 AAATGTGGAGAGGGGTGTGG 59.594 55.000 0.00 0.00 0.00 4.17
737 750 1.500783 AATGTGGAGAGGGGTGTGGG 61.501 60.000 0.00 0.00 0.00 4.61
738 751 2.529389 GTGGAGAGGGGTGTGGGT 60.529 66.667 0.00 0.00 0.00 4.51
739 752 1.229400 GTGGAGAGGGGTGTGGGTA 60.229 63.158 0.00 0.00 0.00 3.69
740 753 0.620700 GTGGAGAGGGGTGTGGGTAT 60.621 60.000 0.00 0.00 0.00 2.73
741 754 0.326238 TGGAGAGGGGTGTGGGTATC 60.326 60.000 0.00 0.00 0.00 2.24
742 755 0.031010 GGAGAGGGGTGTGGGTATCT 60.031 60.000 0.00 0.00 0.00 1.98
743 756 1.625508 GGAGAGGGGTGTGGGTATCTT 60.626 57.143 0.00 0.00 0.00 2.40
744 757 2.197465 GAGAGGGGTGTGGGTATCTTT 58.803 52.381 0.00 0.00 0.00 2.52
745 758 2.576648 GAGAGGGGTGTGGGTATCTTTT 59.423 50.000 0.00 0.00 0.00 2.27
746 759 2.993863 AGAGGGGTGTGGGTATCTTTTT 59.006 45.455 0.00 0.00 0.00 1.94
747 760 3.089284 GAGGGGTGTGGGTATCTTTTTG 58.911 50.000 0.00 0.00 0.00 2.44
748 761 1.548719 GGGGTGTGGGTATCTTTTTGC 59.451 52.381 0.00 0.00 0.00 3.68
749 762 2.243810 GGGTGTGGGTATCTTTTTGCA 58.756 47.619 0.00 0.00 0.00 4.08
750 763 2.630580 GGGTGTGGGTATCTTTTTGCAA 59.369 45.455 0.00 0.00 0.00 4.08
751 764 3.070302 GGGTGTGGGTATCTTTTTGCAAA 59.930 43.478 8.05 8.05 0.00 3.68
752 765 4.443598 GGGTGTGGGTATCTTTTTGCAAAA 60.444 41.667 20.46 20.46 0.00 2.44
753 766 5.304778 GGTGTGGGTATCTTTTTGCAAAAT 58.695 37.500 24.39 12.94 0.00 1.82
754 767 5.762711 GGTGTGGGTATCTTTTTGCAAAATT 59.237 36.000 24.39 14.72 0.00 1.82
755 768 6.931840 GGTGTGGGTATCTTTTTGCAAAATTA 59.068 34.615 24.39 15.75 0.00 1.40
756 769 7.606073 GGTGTGGGTATCTTTTTGCAAAATTAT 59.394 33.333 24.39 20.70 0.00 1.28
757 770 8.655970 GTGTGGGTATCTTTTTGCAAAATTATC 58.344 33.333 24.39 15.77 0.00 1.75
758 771 8.370940 TGTGGGTATCTTTTTGCAAAATTATCA 58.629 29.630 24.39 13.45 0.00 2.15
759 772 9.382275 GTGGGTATCTTTTTGCAAAATTATCAT 57.618 29.630 24.39 13.84 0.00 2.45
780 793 8.774546 ATCATAGTTTCTTCCTATCTGTCAGA 57.225 34.615 4.68 4.68 0.00 3.27
781 794 8.774546 TCATAGTTTCTTCCTATCTGTCAGAT 57.225 34.615 19.12 19.12 38.70 2.90
782 795 9.868160 TCATAGTTTCTTCCTATCTGTCAGATA 57.132 33.333 19.30 19.30 36.20 1.98
789 802 9.434275 TTCTTCCTATCTGTCAGATATAAACCA 57.566 33.333 20.44 1.61 36.67 3.67
790 803 9.083422 TCTTCCTATCTGTCAGATATAAACCAG 57.917 37.037 20.44 10.39 36.67 4.00
791 804 9.083422 CTTCCTATCTGTCAGATATAAACCAGA 57.917 37.037 20.44 8.30 36.67 3.86
792 805 8.410673 TCCTATCTGTCAGATATAAACCAGAC 57.589 38.462 20.44 0.00 36.67 3.51
793 806 7.175119 TCCTATCTGTCAGATATAAACCAGACG 59.825 40.741 20.44 7.09 36.67 4.18
794 807 5.515797 TCTGTCAGATATAAACCAGACGG 57.484 43.478 0.00 0.00 38.77 4.79
795 808 4.051922 CTGTCAGATATAAACCAGACGGC 58.948 47.826 0.00 0.00 34.57 5.68
796 809 3.181469 TGTCAGATATAAACCAGACGGCC 60.181 47.826 0.00 0.00 34.57 6.13
797 810 3.069729 GTCAGATATAAACCAGACGGCCT 59.930 47.826 0.00 0.00 34.57 5.19
798 811 4.280174 GTCAGATATAAACCAGACGGCCTA 59.720 45.833 0.00 0.00 34.57 3.93
799 812 5.047235 GTCAGATATAAACCAGACGGCCTAT 60.047 44.000 0.00 0.00 34.57 2.57
800 813 6.152323 GTCAGATATAAACCAGACGGCCTATA 59.848 42.308 0.00 0.00 34.57 1.31
801 814 6.152323 TCAGATATAAACCAGACGGCCTATAC 59.848 42.308 0.00 0.00 34.57 1.47
802 815 6.153000 CAGATATAAACCAGACGGCCTATACT 59.847 42.308 0.00 0.00 34.57 2.12
803 816 2.981859 AAACCAGACGGCCTATACTG 57.018 50.000 0.00 4.82 34.57 2.74
804 817 2.154567 AACCAGACGGCCTATACTGA 57.845 50.000 0.00 0.00 34.57 3.41
805 818 2.154567 ACCAGACGGCCTATACTGAA 57.845 50.000 0.00 0.00 34.57 3.02
806 819 2.032620 ACCAGACGGCCTATACTGAAG 58.967 52.381 0.00 0.00 34.57 3.02
807 820 1.341531 CCAGACGGCCTATACTGAAGG 59.658 57.143 0.00 0.00 37.17 3.46
808 821 2.307768 CAGACGGCCTATACTGAAGGA 58.692 52.381 0.00 0.00 36.08 3.36
809 822 2.894126 CAGACGGCCTATACTGAAGGAT 59.106 50.000 0.00 0.00 36.08 3.24
810 823 2.894126 AGACGGCCTATACTGAAGGATG 59.106 50.000 0.00 0.00 36.08 3.51
811 824 2.891580 GACGGCCTATACTGAAGGATGA 59.108 50.000 0.00 0.00 36.08 2.92
812 825 2.628657 ACGGCCTATACTGAAGGATGAC 59.371 50.000 0.00 0.00 36.08 3.06
813 826 2.628178 CGGCCTATACTGAAGGATGACA 59.372 50.000 0.00 0.00 36.08 3.58
814 827 3.305676 CGGCCTATACTGAAGGATGACAG 60.306 52.174 0.00 0.00 36.08 3.51
815 828 3.898123 GGCCTATACTGAAGGATGACAGA 59.102 47.826 0.00 0.00 36.08 3.41
816 829 4.262249 GGCCTATACTGAAGGATGACAGAC 60.262 50.000 0.00 0.00 36.08 3.51
817 830 4.342378 GCCTATACTGAAGGATGACAGACA 59.658 45.833 0.00 0.00 36.08 3.41
818 831 5.737635 GCCTATACTGAAGGATGACAGACAC 60.738 48.000 0.00 0.00 36.08 3.67
819 832 5.360999 CCTATACTGAAGGATGACAGACACA 59.639 44.000 0.00 0.00 36.08 3.72
820 833 3.393089 ACTGAAGGATGACAGACACAC 57.607 47.619 0.00 0.00 37.54 3.82
821 834 2.037772 ACTGAAGGATGACAGACACACC 59.962 50.000 0.00 0.00 37.54 4.16
822 835 2.037641 CTGAAGGATGACAGACACACCA 59.962 50.000 0.00 0.00 36.38 4.17
823 836 2.639347 TGAAGGATGACAGACACACCAT 59.361 45.455 0.00 0.00 33.16 3.55
824 837 3.265791 GAAGGATGACAGACACACCATC 58.734 50.000 0.00 0.00 35.81 3.51
825 838 2.259917 AGGATGACAGACACACCATCA 58.740 47.619 0.00 0.00 37.67 3.07
826 839 2.842496 AGGATGACAGACACACCATCAT 59.158 45.455 0.00 0.00 37.67 2.45
827 840 3.118482 AGGATGACAGACACACCATCATC 60.118 47.826 0.00 4.33 43.20 2.92
828 841 2.368655 TGACAGACACACCATCATCG 57.631 50.000 0.00 0.00 0.00 3.84
829 842 1.618343 TGACAGACACACCATCATCGT 59.382 47.619 0.00 0.00 0.00 3.73
830 843 2.263077 GACAGACACACCATCATCGTC 58.737 52.381 0.00 0.00 0.00 4.20
831 844 1.618343 ACAGACACACCATCATCGTCA 59.382 47.619 0.00 0.00 0.00 4.35
832 845 2.037121 ACAGACACACCATCATCGTCAA 59.963 45.455 0.00 0.00 0.00 3.18
833 846 2.413112 CAGACACACCATCATCGTCAAC 59.587 50.000 0.00 0.00 0.00 3.18
834 847 2.300152 AGACACACCATCATCGTCAACT 59.700 45.455 0.00 0.00 0.00 3.16
835 848 2.413112 GACACACCATCATCGTCAACTG 59.587 50.000 0.00 0.00 0.00 3.16
836 849 2.037121 ACACACCATCATCGTCAACTGA 59.963 45.455 0.00 0.00 0.00 3.41
837 850 2.669924 CACACCATCATCGTCAACTGAG 59.330 50.000 0.00 0.00 0.00 3.35
838 851 2.300152 ACACCATCATCGTCAACTGAGT 59.700 45.455 0.00 0.00 0.00 3.41
839 852 3.244215 ACACCATCATCGTCAACTGAGTT 60.244 43.478 0.00 0.00 0.00 3.01
840 853 3.748048 CACCATCATCGTCAACTGAGTTT 59.252 43.478 0.00 0.00 0.00 2.66
841 854 4.214119 CACCATCATCGTCAACTGAGTTTT 59.786 41.667 0.00 0.00 0.00 2.43
842 855 4.821805 ACCATCATCGTCAACTGAGTTTTT 59.178 37.500 0.00 0.00 0.00 1.94
878 891 7.508636 AGAGATGAGCTATCACTTCCAAGAATA 59.491 37.037 0.00 0.00 38.57 1.75
982 999 4.907879 ATAGCAGTCATAAAAAGGCAGC 57.092 40.909 0.00 0.00 0.00 5.25
996 1013 2.646121 GCAGCCAGCCTTTGTTAGT 58.354 52.632 0.00 0.00 37.23 2.24
997 1014 0.961753 GCAGCCAGCCTTTGTTAGTT 59.038 50.000 0.00 0.00 37.23 2.24
1002 1019 2.096013 GCCAGCCTTTGTTAGTTCGATC 59.904 50.000 0.00 0.00 0.00 3.69
1005 1022 3.304559 CAGCCTTTGTTAGTTCGATCTCG 59.695 47.826 0.00 0.00 41.45 4.04
1010 1027 3.482722 TGTTAGTTCGATCTCGTGGAC 57.517 47.619 0.00 0.00 40.80 4.02
1019 1036 0.246635 ATCTCGTGGACTTTCACCGG 59.753 55.000 0.00 0.00 34.36 5.28
1032 1049 2.691409 TCACCGGTTCATCAAGATCC 57.309 50.000 2.97 0.00 33.51 3.36
1033 1050 1.905894 TCACCGGTTCATCAAGATCCA 59.094 47.619 2.97 0.00 36.12 3.41
1037 1054 2.095853 CCGGTTCATCAAGATCCAAACG 59.904 50.000 0.00 3.00 36.12 3.60
1046 1063 2.736682 GATCCAAACGGCGTCCACG 61.737 63.158 15.17 1.61 43.27 4.94
1070 1087 3.999663 CGATCCAAGGCAGAATTAGATCC 59.000 47.826 0.00 0.00 0.00 3.36
1114 1133 2.523168 AACCTTTGGGGCCAACGG 60.523 61.111 4.39 7.73 46.68 4.44
1272 1294 2.836793 GCCGCTCGACCTAGACCTC 61.837 68.421 0.00 0.00 0.00 3.85
1412 1434 2.449137 AGCTGGCTGCAAATCCTATT 57.551 45.000 18.84 0.00 45.94 1.73
1548 1574 1.187567 ATTGCTGTTGCCTTGACCCC 61.188 55.000 0.00 0.00 38.71 4.95
2723 4464 0.524604 AAACGCACAAACAGAACCGC 60.525 50.000 0.00 0.00 0.00 5.68
3498 5342 1.297689 GCTGCTCAGACATGGACCA 59.702 57.895 0.00 0.00 0.00 4.02
3890 5755 2.094130 GCGCTAGTTCTAACTGGAACCT 60.094 50.000 10.07 0.00 44.56 3.50
4040 5911 4.460505 GTCAAAGTTCGACCCAAAATACG 58.539 43.478 0.00 0.00 0.00 3.06
4051 5922 1.213430 CCAAAATACGAGGGGGCCTAA 59.787 52.381 0.84 0.00 31.76 2.69
4176 6047 5.468746 AGTGCTTTAGTGCGAACAGAAAATA 59.531 36.000 0.00 0.00 35.36 1.40
4290 6166 6.106673 TCTAAGGCTTTACAGCTGTAATGTC 58.893 40.000 33.47 33.47 46.44 3.06
4498 6375 1.470890 ACGGATAAACATGCGTTTGGG 59.529 47.619 0.00 0.00 46.09 4.12
4528 6405 5.516996 CAACCAGCAGCTGATACAATTATG 58.483 41.667 24.90 5.22 32.44 1.90
4772 6653 2.355132 AGCGACATACCTACTGTTCGAG 59.645 50.000 0.48 0.00 0.00 4.04
4872 6757 6.758149 ACTAGTTAATTGCACGTATGTTTCG 58.242 36.000 0.00 0.00 0.00 3.46
5041 6926 0.895530 ACAGTACATCCGGGTGTCTG 59.104 55.000 29.91 29.91 35.39 3.51
5079 6964 9.788960 GATAGATTCACTCGTTATATGCATGTA 57.211 33.333 10.16 3.81 0.00 2.29
5107 6992 1.013596 TAGTTGCTGCACACACACAC 58.986 50.000 0.00 0.00 0.00 3.82
5108 6993 0.959867 AGTTGCTGCACACACACACA 60.960 50.000 0.00 0.00 0.00 3.72
5148 7033 2.517402 TGCCAAAACCGACGGCTT 60.517 55.556 15.39 4.94 46.39 4.35
5149 7034 2.070654 CTGCCAAAACCGACGGCTTT 62.071 55.000 15.39 12.12 46.39 3.51
5184 7069 9.442047 AATTTGTTTGGTTTTATCTGTGACAAA 57.558 25.926 0.00 0.00 38.38 2.83
5185 7070 8.472683 TTTGTTTGGTTTTATCTGTGACAAAG 57.527 30.769 0.00 0.00 32.61 2.77
5186 7071 6.039616 TGTTTGGTTTTATCTGTGACAAAGC 58.960 36.000 0.00 0.00 0.00 3.51
5187 7072 6.127479 TGTTTGGTTTTATCTGTGACAAAGCT 60.127 34.615 0.00 0.00 0.00 3.74
5188 7073 5.689383 TGGTTTTATCTGTGACAAAGCTC 57.311 39.130 0.00 0.00 0.00 4.09
5189 7074 5.129634 TGGTTTTATCTGTGACAAAGCTCA 58.870 37.500 0.00 0.00 0.00 4.26
5190 7075 5.592282 TGGTTTTATCTGTGACAAAGCTCAA 59.408 36.000 0.00 0.00 0.00 3.02
5191 7076 6.145535 GGTTTTATCTGTGACAAAGCTCAAG 58.854 40.000 0.00 0.00 0.00 3.02
5192 7077 6.017109 GGTTTTATCTGTGACAAAGCTCAAGA 60.017 38.462 0.00 0.00 0.00 3.02
5219 7104 8.044908 AGCTGCATGTATATATGATGTGATTGA 58.955 33.333 13.18 0.00 0.00 2.57
5454 7339 2.158957 TGCTGTAAGGATCGGACATTCC 60.159 50.000 0.00 0.00 0.00 3.01
5493 7378 8.839947 AATAAACCACGTTATTATAAAACCGC 57.160 30.769 0.00 0.00 33.00 5.68
5527 7412 3.619038 CGCCTTGACTTCTGGTTTATCTC 59.381 47.826 0.00 0.00 0.00 2.75
5601 7486 3.132646 TCAACATTGCAAAAGCAAGAGGT 59.867 39.130 1.71 4.49 32.97 3.85
5606 7491 5.534654 ACATTGCAAAAGCAAGAGGTACTTA 59.465 36.000 1.71 0.00 41.55 2.24
5661 7546 6.756221 ACTTGAATACCCATACGTCCTATTC 58.244 40.000 0.00 0.00 0.00 1.75
5685 7570 2.067766 GTAAATTACACGCACGGTCCA 58.932 47.619 0.00 0.00 0.00 4.02
5686 7571 1.153353 AAATTACACGCACGGTCCAG 58.847 50.000 0.00 0.00 0.00 3.86
5687 7572 0.672401 AATTACACGCACGGTCCAGG 60.672 55.000 0.00 0.00 0.00 4.45
5688 7573 3.869473 TTACACGCACGGTCCAGGC 62.869 63.158 0.00 0.00 0.00 4.85
5708 7593 1.192146 AGGAACTTGTCGGCCTGCTA 61.192 55.000 0.00 0.00 27.25 3.49
5709 7594 0.107654 GGAACTTGTCGGCCTGCTAT 60.108 55.000 0.00 0.00 0.00 2.97
5722 8149 1.940613 CCTGCTATAAAACAGTCCCGC 59.059 52.381 0.00 0.00 31.76 6.13
5748 8175 1.794222 GGATCGCTCCAAAACGGTG 59.206 57.895 0.00 0.00 41.64 4.94
5765 8192 2.287915 CGGTGCTCATACTTGCCATTAC 59.712 50.000 0.00 0.00 0.00 1.89
5824 8263 4.794439 TGCCACGTCATCCTCGCG 62.794 66.667 0.00 0.00 0.00 5.87
5862 8301 1.261619 CGCTTAAATCAGATCGTGGCC 59.738 52.381 0.00 0.00 0.00 5.36
5901 8340 0.331616 CCCCTCCAACCCGAAAATCT 59.668 55.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.169577 CTCGATCCAGATCCGGTAGG 58.830 60.000 0.00 0.00 34.40 3.18
23 24 0.523966 GCTCGATCCAGATCCGGTAG 59.476 60.000 0.00 0.00 34.40 3.18
24 25 0.894184 GGCTCGATCCAGATCCGGTA 60.894 60.000 0.00 0.00 34.40 4.02
25 26 2.203771 GGCTCGATCCAGATCCGGT 61.204 63.158 0.00 0.00 34.40 5.28
26 27 2.653702 GGCTCGATCCAGATCCGG 59.346 66.667 0.00 0.00 34.40 5.14
27 28 2.256764 CGGCTCGATCCAGATCCG 59.743 66.667 6.06 0.00 42.31 4.18
28 29 1.287503 GTCGGCTCGATCCAGATCC 59.712 63.158 6.06 0.00 38.42 3.36
29 30 1.081774 CGTCGGCTCGATCCAGATC 60.082 63.158 6.06 0.00 38.42 2.75
30 31 3.034878 CGTCGGCTCGATCCAGAT 58.965 61.111 6.06 0.00 38.42 2.90
31 32 3.889044 GCGTCGGCTCGATCCAGA 61.889 66.667 6.06 1.13 38.42 3.86
32 33 4.933064 GGCGTCGGCTCGATCCAG 62.933 72.222 12.17 0.00 38.42 3.86
34 35 4.286320 ATGGCGTCGGCTCGATCC 62.286 66.667 20.29 0.00 38.42 3.36
35 36 2.731348 GATGGCGTCGGCTCGATC 60.731 66.667 20.29 10.75 38.42 3.69
36 37 3.527427 TGATGGCGTCGGCTCGAT 61.527 61.111 20.29 5.03 38.42 3.59
37 38 4.492160 GTGATGGCGTCGGCTCGA 62.492 66.667 20.29 0.00 39.81 4.04
39 40 4.451150 TGGTGATGGCGTCGGCTC 62.451 66.667 20.29 14.39 39.81 4.70
40 41 4.760047 GTGGTGATGGCGTCGGCT 62.760 66.667 20.29 5.42 39.81 5.52
42 43 0.461163 TAATGTGGTGATGGCGTCGG 60.461 55.000 1.67 0.00 0.00 4.79
43 44 0.930310 CTAATGTGGTGATGGCGTCG 59.070 55.000 1.67 0.00 0.00 5.12
44 45 0.657840 GCTAATGTGGTGATGGCGTC 59.342 55.000 0.00 0.00 0.00 5.19
45 46 0.748005 GGCTAATGTGGTGATGGCGT 60.748 55.000 0.00 0.00 0.00 5.68
46 47 1.775039 CGGCTAATGTGGTGATGGCG 61.775 60.000 0.00 0.00 37.17 5.69
47 48 0.463654 TCGGCTAATGTGGTGATGGC 60.464 55.000 0.00 0.00 0.00 4.40
48 49 1.586422 CTCGGCTAATGTGGTGATGG 58.414 55.000 0.00 0.00 0.00 3.51
49 50 0.940126 GCTCGGCTAATGTGGTGATG 59.060 55.000 0.00 0.00 0.00 3.07
50 51 0.541392 TGCTCGGCTAATGTGGTGAT 59.459 50.000 0.00 0.00 0.00 3.06
51 52 0.391130 GTGCTCGGCTAATGTGGTGA 60.391 55.000 0.00 0.00 0.00 4.02
52 53 1.369091 GGTGCTCGGCTAATGTGGTG 61.369 60.000 0.00 0.00 0.00 4.17
53 54 1.078426 GGTGCTCGGCTAATGTGGT 60.078 57.895 0.00 0.00 0.00 4.16
54 55 1.078497 TGGTGCTCGGCTAATGTGG 60.078 57.895 0.00 0.00 0.00 4.17
55 56 1.369091 GGTGGTGCTCGGCTAATGTG 61.369 60.000 0.00 0.00 0.00 3.21
56 57 1.078426 GGTGGTGCTCGGCTAATGT 60.078 57.895 0.00 0.00 0.00 2.71
57 58 2.173669 CGGTGGTGCTCGGCTAATG 61.174 63.158 0.00 0.00 0.00 1.90
58 59 1.895020 TTCGGTGGTGCTCGGCTAAT 61.895 55.000 0.00 0.00 0.00 1.73
59 60 2.501223 CTTCGGTGGTGCTCGGCTAA 62.501 60.000 0.00 0.00 0.00 3.09
60 61 2.992689 TTCGGTGGTGCTCGGCTA 60.993 61.111 0.00 0.00 0.00 3.93
61 62 4.379243 CTTCGGTGGTGCTCGGCT 62.379 66.667 0.00 0.00 0.00 5.52
63 64 4.680237 TGCTTCGGTGGTGCTCGG 62.680 66.667 0.00 0.00 0.00 4.63
64 65 3.414700 GTGCTTCGGTGGTGCTCG 61.415 66.667 0.00 0.00 0.00 5.03
65 66 1.891919 TTGTGCTTCGGTGGTGCTC 60.892 57.895 0.00 0.00 0.00 4.26
66 67 2.186826 GTTGTGCTTCGGTGGTGCT 61.187 57.895 0.00 0.00 0.00 4.40
67 68 2.331451 GTTGTGCTTCGGTGGTGC 59.669 61.111 0.00 0.00 0.00 5.01
68 69 1.380403 TTGGTTGTGCTTCGGTGGTG 61.380 55.000 0.00 0.00 0.00 4.17
69 70 0.467290 ATTGGTTGTGCTTCGGTGGT 60.467 50.000 0.00 0.00 0.00 4.16
70 71 0.240945 GATTGGTTGTGCTTCGGTGG 59.759 55.000 0.00 0.00 0.00 4.61
71 72 0.950836 TGATTGGTTGTGCTTCGGTG 59.049 50.000 0.00 0.00 0.00 4.94
72 73 0.951558 GTGATTGGTTGTGCTTCGGT 59.048 50.000 0.00 0.00 0.00 4.69
73 74 0.110238 CGTGATTGGTTGTGCTTCGG 60.110 55.000 0.00 0.00 0.00 4.30
74 75 0.725784 GCGTGATTGGTTGTGCTTCG 60.726 55.000 0.00 0.00 0.00 3.79
75 76 0.387239 GGCGTGATTGGTTGTGCTTC 60.387 55.000 0.00 0.00 0.00 3.86
76 77 1.106351 TGGCGTGATTGGTTGTGCTT 61.106 50.000 0.00 0.00 0.00 3.91
77 78 1.528076 TGGCGTGATTGGTTGTGCT 60.528 52.632 0.00 0.00 0.00 4.40
78 79 1.371635 GTGGCGTGATTGGTTGTGC 60.372 57.895 0.00 0.00 0.00 4.57
79 80 1.285641 GGTGGCGTGATTGGTTGTG 59.714 57.895 0.00 0.00 0.00 3.33
80 81 1.152860 TGGTGGCGTGATTGGTTGT 60.153 52.632 0.00 0.00 0.00 3.32
81 82 1.580942 CTGGTGGCGTGATTGGTTG 59.419 57.895 0.00 0.00 0.00 3.77
82 83 2.268076 GCTGGTGGCGTGATTGGTT 61.268 57.895 0.00 0.00 0.00 3.67
83 84 2.672996 GCTGGTGGCGTGATTGGT 60.673 61.111 0.00 0.00 0.00 3.67
84 85 2.672651 TGCTGGTGGCGTGATTGG 60.673 61.111 0.00 0.00 45.43 3.16
85 86 2.562912 GTGCTGGTGGCGTGATTG 59.437 61.111 0.00 0.00 45.43 2.67
86 87 3.049674 CGTGCTGGTGGCGTGATT 61.050 61.111 0.00 0.00 45.43 2.57
112 113 3.274586 CATCGGCGCAGGTGATGG 61.275 66.667 16.27 1.48 36.66 3.51
113 114 2.202919 TCATCGGCGCAGGTGATG 60.203 61.111 19.85 19.35 40.61 3.07
114 115 2.107750 CTCATCGGCGCAGGTGAT 59.892 61.111 23.63 10.63 0.00 3.06
115 116 4.147449 CCTCATCGGCGCAGGTGA 62.147 66.667 22.14 22.14 0.00 4.02
147 148 4.162690 ATGGAGTTCTCGCGGGGC 62.163 66.667 5.94 0.00 0.00 5.80
148 149 2.202932 CATGGAGTTCTCGCGGGG 60.203 66.667 5.94 0.00 0.00 5.73
149 150 1.519455 GTCATGGAGTTCTCGCGGG 60.519 63.158 6.13 1.01 0.00 6.13
150 151 1.519455 GGTCATGGAGTTCTCGCGG 60.519 63.158 6.13 0.00 0.00 6.46
151 152 0.803768 CTGGTCATGGAGTTCTCGCG 60.804 60.000 0.00 0.00 0.00 5.87
152 153 0.532573 TCTGGTCATGGAGTTCTCGC 59.467 55.000 0.00 0.00 0.00 5.03
153 154 2.223923 GGATCTGGTCATGGAGTTCTCG 60.224 54.545 0.00 0.00 0.00 4.04
154 155 2.768527 TGGATCTGGTCATGGAGTTCTC 59.231 50.000 0.00 0.00 0.00 2.87
155 156 2.770802 CTGGATCTGGTCATGGAGTTCT 59.229 50.000 0.00 0.00 0.00 3.01
156 157 2.158842 CCTGGATCTGGTCATGGAGTTC 60.159 54.545 0.00 0.00 0.00 3.01
157 158 1.842562 CCTGGATCTGGTCATGGAGTT 59.157 52.381 0.00 0.00 0.00 3.01
158 159 1.274069 ACCTGGATCTGGTCATGGAGT 60.274 52.381 0.00 0.00 29.71 3.85
159 160 1.415659 GACCTGGATCTGGTCATGGAG 59.584 57.143 23.82 0.00 46.90 3.86
160 161 1.500474 GACCTGGATCTGGTCATGGA 58.500 55.000 23.82 0.00 46.90 3.41
166 167 2.362369 CGGCAGACCTGGATCTGGT 61.362 63.158 20.40 10.01 45.35 4.00
167 168 2.503061 CGGCAGACCTGGATCTGG 59.497 66.667 20.40 0.00 45.35 3.86
169 170 3.474570 GCCGGCAGACCTGGATCT 61.475 66.667 24.80 0.00 33.09 2.75
170 171 4.554036 GGCCGGCAGACCTGGATC 62.554 72.222 30.85 1.84 33.09 3.36
191 192 4.101448 ACATGCGGGAGGGCTGAC 62.101 66.667 0.00 0.00 0.00 3.51
192 193 4.100084 CACATGCGGGAGGGCTGA 62.100 66.667 0.00 0.00 0.00 4.26
203 204 0.247814 CATCTTCGTTCGCCACATGC 60.248 55.000 0.00 0.00 0.00 4.06
204 205 0.247814 GCATCTTCGTTCGCCACATG 60.248 55.000 0.00 0.00 0.00 3.21
205 206 1.369091 GGCATCTTCGTTCGCCACAT 61.369 55.000 0.00 0.00 44.25 3.21
206 207 2.032634 GGCATCTTCGTTCGCCACA 61.033 57.895 0.00 0.00 44.25 4.17
207 208 2.750888 GGGCATCTTCGTTCGCCAC 61.751 63.158 0.00 0.00 46.75 5.01
208 209 2.435938 GGGCATCTTCGTTCGCCA 60.436 61.111 0.00 0.00 46.75 5.69
209 210 3.202706 GGGGCATCTTCGTTCGCC 61.203 66.667 0.00 0.00 44.10 5.54
210 211 3.564027 CGGGGCATCTTCGTTCGC 61.564 66.667 0.00 0.00 0.00 4.70
211 212 3.564027 GCGGGGCATCTTCGTTCG 61.564 66.667 0.00 0.00 0.00 3.95
212 213 3.202706 GGCGGGGCATCTTCGTTC 61.203 66.667 0.00 0.00 0.00 3.95
278 279 4.598894 CTCATCCTCCTGCCGCCG 62.599 72.222 0.00 0.00 0.00 6.46
279 280 4.247380 CCTCATCCTCCTGCCGCC 62.247 72.222 0.00 0.00 0.00 6.13
280 281 3.157252 TCCTCATCCTCCTGCCGC 61.157 66.667 0.00 0.00 0.00 6.53
281 282 1.456518 TCTCCTCATCCTCCTGCCG 60.457 63.158 0.00 0.00 0.00 5.69
282 283 1.120795 CCTCTCCTCATCCTCCTGCC 61.121 65.000 0.00 0.00 0.00 4.85
283 284 0.105760 TCCTCTCCTCATCCTCCTGC 60.106 60.000 0.00 0.00 0.00 4.85
284 285 1.498576 TCTCCTCTCCTCATCCTCCTG 59.501 57.143 0.00 0.00 0.00 3.86
285 286 1.782752 CTCTCCTCTCCTCATCCTCCT 59.217 57.143 0.00 0.00 0.00 3.69
286 287 1.203050 CCTCTCCTCTCCTCATCCTCC 60.203 61.905 0.00 0.00 0.00 4.30
287 288 1.499007 ACCTCTCCTCTCCTCATCCTC 59.501 57.143 0.00 0.00 0.00 3.71
288 289 1.217689 CACCTCTCCTCTCCTCATCCT 59.782 57.143 0.00 0.00 0.00 3.24
289 290 1.703411 CACCTCTCCTCTCCTCATCC 58.297 60.000 0.00 0.00 0.00 3.51
290 291 1.063266 ACCACCTCTCCTCTCCTCATC 60.063 57.143 0.00 0.00 0.00 2.92
291 292 1.014804 ACCACCTCTCCTCTCCTCAT 58.985 55.000 0.00 0.00 0.00 2.90
292 293 0.040351 CACCACCTCTCCTCTCCTCA 59.960 60.000 0.00 0.00 0.00 3.86
293 294 0.333312 TCACCACCTCTCCTCTCCTC 59.667 60.000 0.00 0.00 0.00 3.71
294 295 0.334676 CTCACCACCTCTCCTCTCCT 59.665 60.000 0.00 0.00 0.00 3.69
295 296 0.686112 CCTCACCACCTCTCCTCTCC 60.686 65.000 0.00 0.00 0.00 3.71
296 297 1.326951 GCCTCACCACCTCTCCTCTC 61.327 65.000 0.00 0.00 0.00 3.20
297 298 1.305718 GCCTCACCACCTCTCCTCT 60.306 63.158 0.00 0.00 0.00 3.69
298 299 2.716017 CGCCTCACCACCTCTCCTC 61.716 68.421 0.00 0.00 0.00 3.71
299 300 2.681778 CGCCTCACCACCTCTCCT 60.682 66.667 0.00 0.00 0.00 3.69
300 301 3.775654 CCGCCTCACCACCTCTCC 61.776 72.222 0.00 0.00 0.00 3.71
301 302 4.459089 GCCGCCTCACCACCTCTC 62.459 72.222 0.00 0.00 0.00 3.20
318 319 2.758737 AGGAACCCTAGCCGTCGG 60.759 66.667 6.99 6.99 28.47 4.79
319 320 2.783288 GGAGGAACCCTAGCCGTCG 61.783 68.421 0.00 0.00 31.76 5.12
320 321 3.218227 GGAGGAACCCTAGCCGTC 58.782 66.667 0.00 0.00 31.76 4.79
351 352 3.535962 CTCCTCCTCTGGCGCTCC 61.536 72.222 7.64 0.00 0.00 4.70
352 353 2.757917 ACTCCTCCTCTGGCGCTC 60.758 66.667 7.64 0.00 0.00 5.03
353 354 2.757917 GACTCCTCCTCTGGCGCT 60.758 66.667 7.64 0.00 0.00 5.92
354 355 1.893919 AAAGACTCCTCCTCTGGCGC 61.894 60.000 0.00 0.00 0.00 6.53
355 356 0.610687 AAAAGACTCCTCCTCTGGCG 59.389 55.000 0.00 0.00 0.00 5.69
356 357 2.705730 GAAAAAGACTCCTCCTCTGGC 58.294 52.381 0.00 0.00 0.00 4.85
357 358 2.300437 ACGAAAAAGACTCCTCCTCTGG 59.700 50.000 0.00 0.00 0.00 3.86
358 359 3.580731 GACGAAAAAGACTCCTCCTCTG 58.419 50.000 0.00 0.00 0.00 3.35
359 360 2.563620 GGACGAAAAAGACTCCTCCTCT 59.436 50.000 0.00 0.00 0.00 3.69
360 361 2.299297 TGGACGAAAAAGACTCCTCCTC 59.701 50.000 0.00 0.00 0.00 3.71
361 362 2.037381 GTGGACGAAAAAGACTCCTCCT 59.963 50.000 0.00 0.00 0.00 3.69
362 363 2.414806 GTGGACGAAAAAGACTCCTCC 58.585 52.381 0.00 0.00 0.00 4.30
363 364 2.059541 CGTGGACGAAAAAGACTCCTC 58.940 52.381 0.00 0.00 43.02 3.71
364 365 1.684983 TCGTGGACGAAAAAGACTCCT 59.315 47.619 0.00 0.00 46.30 3.69
365 366 2.144482 TCGTGGACGAAAAAGACTCC 57.856 50.000 0.00 0.00 46.30 3.85
375 376 2.738480 CCAAGGGTTCGTGGACGA 59.262 61.111 0.00 0.00 43.82 4.20
376 377 3.047877 GCCAAGGGTTCGTGGACG 61.048 66.667 2.69 0.00 43.82 4.79
377 378 2.671963 GGCCAAGGGTTCGTGGAC 60.672 66.667 0.00 0.00 43.82 4.02
378 379 4.323477 CGGCCAAGGGTTCGTGGA 62.323 66.667 2.24 0.00 43.82 4.02
385 386 3.569200 GAGAAAGCCGGCCAAGGGT 62.569 63.158 26.15 0.00 45.04 4.34
386 387 2.751837 GAGAAAGCCGGCCAAGGG 60.752 66.667 26.15 0.00 0.00 3.95
387 388 3.127533 CGAGAAAGCCGGCCAAGG 61.128 66.667 26.15 3.84 0.00 3.61
398 399 1.515954 GGGATGCGACCTCGAGAAA 59.484 57.895 15.71 0.00 43.02 2.52
401 402 3.917760 GGGGGATGCGACCTCGAG 61.918 72.222 5.13 5.13 43.02 4.04
431 432 4.550447 CGTCTCCGTGTAGATCTAAAGACG 60.550 50.000 23.44 23.44 45.70 4.18
471 472 2.436824 GGCTTCGGCTTCAGGTCC 60.437 66.667 0.00 0.00 41.44 4.46
501 514 4.292178 CAGATCCTCCGCCTCCGC 62.292 72.222 0.00 0.00 0.00 5.54
531 544 2.109181 GCTACTCCACCGATGCCC 59.891 66.667 0.00 0.00 0.00 5.36
532 545 1.227380 CTGCTACTCCACCGATGCC 60.227 63.158 0.00 0.00 0.00 4.40
540 553 0.116342 TCAACCCCTCTGCTACTCCA 59.884 55.000 0.00 0.00 0.00 3.86
554 567 2.820037 GTAGCAGCCGCCTCAACC 60.820 66.667 0.00 0.00 39.83 3.77
562 575 2.963854 CATCCGCAGTAGCAGCCG 60.964 66.667 0.00 0.00 42.27 5.52
598 611 5.106197 TGCTAGTACCGATTAAAAGACACGA 60.106 40.000 0.00 0.00 0.00 4.35
612 625 3.242739 GCATGGACATTTTGCTAGTACCG 60.243 47.826 0.00 0.00 33.61 4.02
616 629 2.436417 ACGCATGGACATTTTGCTAGT 58.564 42.857 0.00 0.00 34.23 2.57
617 630 3.173599 CAACGCATGGACATTTTGCTAG 58.826 45.455 0.00 0.00 34.23 3.42
618 631 2.670789 GCAACGCATGGACATTTTGCTA 60.671 45.455 12.42 0.00 37.08 3.49
619 632 1.936203 GCAACGCATGGACATTTTGCT 60.936 47.619 12.42 0.00 37.08 3.91
620 633 0.439600 GCAACGCATGGACATTTTGC 59.560 50.000 0.00 7.07 33.23 3.68
621 634 1.780806 TGCAACGCATGGACATTTTG 58.219 45.000 0.00 0.00 31.71 2.44
635 648 2.855180 CATCTTGATGTTCCGTGCAAC 58.145 47.619 0.00 0.00 0.00 4.17
636 649 1.199789 GCATCTTGATGTTCCGTGCAA 59.800 47.619 11.61 0.00 0.00 4.08
637 650 0.804364 GCATCTTGATGTTCCGTGCA 59.196 50.000 11.61 0.00 0.00 4.57
638 651 0.804364 TGCATCTTGATGTTCCGTGC 59.196 50.000 11.61 0.00 0.00 5.34
639 652 3.770263 AATGCATCTTGATGTTCCGTG 57.230 42.857 0.00 0.00 0.00 4.94
640 653 3.507233 ACAAATGCATCTTGATGTTCCGT 59.493 39.130 20.96 2.07 0.00 4.69
641 654 4.100707 ACAAATGCATCTTGATGTTCCG 57.899 40.909 20.96 1.56 0.00 4.30
642 655 6.798482 TCATACAAATGCATCTTGATGTTCC 58.202 36.000 20.96 0.00 32.76 3.62
643 656 7.478322 ACTCATACAAATGCATCTTGATGTTC 58.522 34.615 20.96 0.00 32.76 3.18
644 657 7.400599 ACTCATACAAATGCATCTTGATGTT 57.599 32.000 20.96 1.04 32.76 2.71
645 658 7.772292 ACTACTCATACAAATGCATCTTGATGT 59.228 33.333 20.96 14.21 32.76 3.06
646 659 8.151141 ACTACTCATACAAATGCATCTTGATG 57.849 34.615 20.96 18.39 32.76 3.07
647 660 8.743085 AACTACTCATACAAATGCATCTTGAT 57.257 30.769 20.96 11.48 32.76 2.57
648 661 8.565896 AAACTACTCATACAAATGCATCTTGA 57.434 30.769 20.96 10.81 32.76 3.02
654 667 9.448438 ACAAGATAAACTACTCATACAAATGCA 57.552 29.630 0.00 0.00 32.76 3.96
655 668 9.708222 CACAAGATAAACTACTCATACAAATGC 57.292 33.333 0.00 0.00 32.76 3.56
657 670 9.396022 CCCACAAGATAAACTACTCATACAAAT 57.604 33.333 0.00 0.00 0.00 2.32
658 671 8.598916 TCCCACAAGATAAACTACTCATACAAA 58.401 33.333 0.00 0.00 0.00 2.83
659 672 8.141298 TCCCACAAGATAAACTACTCATACAA 57.859 34.615 0.00 0.00 0.00 2.41
660 673 7.618117 TCTCCCACAAGATAAACTACTCATACA 59.382 37.037 0.00 0.00 0.00 2.29
661 674 8.008513 TCTCCCACAAGATAAACTACTCATAC 57.991 38.462 0.00 0.00 0.00 2.39
662 675 8.603898 TTCTCCCACAAGATAAACTACTCATA 57.396 34.615 0.00 0.00 0.00 2.15
663 676 7.496346 TTCTCCCACAAGATAAACTACTCAT 57.504 36.000 0.00 0.00 0.00 2.90
664 677 6.928348 TTCTCCCACAAGATAAACTACTCA 57.072 37.500 0.00 0.00 0.00 3.41
665 678 7.334671 CCTTTTCTCCCACAAGATAAACTACTC 59.665 40.741 0.00 0.00 0.00 2.59
666 679 7.017254 TCCTTTTCTCCCACAAGATAAACTACT 59.983 37.037 0.00 0.00 0.00 2.57
667 680 7.166167 TCCTTTTCTCCCACAAGATAAACTAC 58.834 38.462 0.00 0.00 0.00 2.73
668 681 7.324388 TCCTTTTCTCCCACAAGATAAACTA 57.676 36.000 0.00 0.00 0.00 2.24
669 682 6.200878 TCCTTTTCTCCCACAAGATAAACT 57.799 37.500 0.00 0.00 0.00 2.66
670 683 6.659242 TCATCCTTTTCTCCCACAAGATAAAC 59.341 38.462 0.00 0.00 0.00 2.01
671 684 6.789268 TCATCCTTTTCTCCCACAAGATAAA 58.211 36.000 0.00 0.00 0.00 1.40
672 685 6.387192 TCATCCTTTTCTCCCACAAGATAA 57.613 37.500 0.00 0.00 0.00 1.75
673 686 6.387192 TTCATCCTTTTCTCCCACAAGATA 57.613 37.500 0.00 0.00 0.00 1.98
674 687 4.934797 TCATCCTTTTCTCCCACAAGAT 57.065 40.909 0.00 0.00 0.00 2.40
675 688 4.722526 TTCATCCTTTTCTCCCACAAGA 57.277 40.909 0.00 0.00 0.00 3.02
676 689 5.012239 TCATTCATCCTTTTCTCCCACAAG 58.988 41.667 0.00 0.00 0.00 3.16
677 690 4.996793 TCATTCATCCTTTTCTCCCACAA 58.003 39.130 0.00 0.00 0.00 3.33
678 691 4.568380 CCTCATTCATCCTTTTCTCCCACA 60.568 45.833 0.00 0.00 0.00 4.17
679 692 3.950395 CCTCATTCATCCTTTTCTCCCAC 59.050 47.826 0.00 0.00 0.00 4.61
680 693 3.053395 CCCTCATTCATCCTTTTCTCCCA 60.053 47.826 0.00 0.00 0.00 4.37
681 694 3.203040 TCCCTCATTCATCCTTTTCTCCC 59.797 47.826 0.00 0.00 0.00 4.30
682 695 4.510167 TCCCTCATTCATCCTTTTCTCC 57.490 45.455 0.00 0.00 0.00 3.71
683 696 4.886489 CCTTCCCTCATTCATCCTTTTCTC 59.114 45.833 0.00 0.00 0.00 2.87
684 697 4.864726 CCTTCCCTCATTCATCCTTTTCT 58.135 43.478 0.00 0.00 0.00 2.52
685 698 3.382865 GCCTTCCCTCATTCATCCTTTTC 59.617 47.826 0.00 0.00 0.00 2.29
686 699 3.369175 GCCTTCCCTCATTCATCCTTTT 58.631 45.455 0.00 0.00 0.00 2.27
687 700 2.358615 GGCCTTCCCTCATTCATCCTTT 60.359 50.000 0.00 0.00 0.00 3.11
688 701 1.216427 GGCCTTCCCTCATTCATCCTT 59.784 52.381 0.00 0.00 0.00 3.36
689 702 0.849417 GGCCTTCCCTCATTCATCCT 59.151 55.000 0.00 0.00 0.00 3.24
690 703 0.849417 AGGCCTTCCCTCATTCATCC 59.151 55.000 0.00 0.00 41.21 3.51
691 704 2.744352 AAGGCCTTCCCTCATTCATC 57.256 50.000 13.78 0.00 45.62 2.92
692 705 4.821532 AATAAGGCCTTCCCTCATTCAT 57.178 40.909 24.49 3.14 45.62 2.57
693 706 4.280819 CAAATAAGGCCTTCCCTCATTCA 58.719 43.478 24.49 0.18 45.62 2.57
694 707 3.068732 GCAAATAAGGCCTTCCCTCATTC 59.931 47.826 24.49 1.16 45.62 2.67
695 708 3.033909 GCAAATAAGGCCTTCCCTCATT 58.966 45.455 24.49 13.11 45.62 2.57
696 709 2.024080 TGCAAATAAGGCCTTCCCTCAT 60.024 45.455 24.49 6.57 45.62 2.90
697 710 1.357420 TGCAAATAAGGCCTTCCCTCA 59.643 47.619 24.49 11.98 45.62 3.86
698 711 2.143876 TGCAAATAAGGCCTTCCCTC 57.856 50.000 24.49 9.38 45.62 4.30
700 713 3.055167 ACATTTGCAAATAAGGCCTTCCC 60.055 43.478 24.49 7.52 0.00 3.97
701 714 3.934579 CACATTTGCAAATAAGGCCTTCC 59.065 43.478 24.49 7.15 0.00 3.46
702 715 3.934579 CCACATTTGCAAATAAGGCCTTC 59.065 43.478 24.49 7.84 0.00 3.46
703 716 3.582208 TCCACATTTGCAAATAAGGCCTT 59.418 39.130 23.69 24.18 0.00 4.35
704 717 3.172339 TCCACATTTGCAAATAAGGCCT 58.828 40.909 23.69 0.00 0.00 5.19
705 718 3.195396 TCTCCACATTTGCAAATAAGGCC 59.805 43.478 23.69 0.00 0.00 5.19
706 719 4.427312 CTCTCCACATTTGCAAATAAGGC 58.573 43.478 23.69 0.00 0.00 4.35
707 720 4.142093 CCCTCTCCACATTTGCAAATAAGG 60.142 45.833 23.69 24.65 0.00 2.69
708 721 4.142093 CCCCTCTCCACATTTGCAAATAAG 60.142 45.833 23.69 17.76 0.00 1.73
709 722 3.768757 CCCCTCTCCACATTTGCAAATAA 59.231 43.478 23.69 9.41 0.00 1.40
710 723 3.245586 ACCCCTCTCCACATTTGCAAATA 60.246 43.478 23.69 8.18 0.00 1.40
711 724 2.181975 CCCCTCTCCACATTTGCAAAT 58.818 47.619 18.99 18.99 0.00 2.32
712 725 1.133199 ACCCCTCTCCACATTTGCAAA 60.133 47.619 15.44 15.44 0.00 3.68
713 726 0.482446 ACCCCTCTCCACATTTGCAA 59.518 50.000 0.00 0.00 0.00 4.08
714 727 0.251297 CACCCCTCTCCACATTTGCA 60.251 55.000 0.00 0.00 0.00 4.08
715 728 0.251341 ACACCCCTCTCCACATTTGC 60.251 55.000 0.00 0.00 0.00 3.68
716 729 1.538047 CACACCCCTCTCCACATTTG 58.462 55.000 0.00 0.00 0.00 2.32
717 730 0.405585 CCACACCCCTCTCCACATTT 59.594 55.000 0.00 0.00 0.00 2.32
718 731 1.500783 CCCACACCCCTCTCCACATT 61.501 60.000 0.00 0.00 0.00 2.71
719 732 1.925455 CCCACACCCCTCTCCACAT 60.925 63.158 0.00 0.00 0.00 3.21
720 733 2.038545 TACCCACACCCCTCTCCACA 62.039 60.000 0.00 0.00 0.00 4.17
721 734 0.620700 ATACCCACACCCCTCTCCAC 60.621 60.000 0.00 0.00 0.00 4.02
722 735 0.326238 GATACCCACACCCCTCTCCA 60.326 60.000 0.00 0.00 0.00 3.86
723 736 0.031010 AGATACCCACACCCCTCTCC 60.031 60.000 0.00 0.00 0.00 3.71
724 737 1.880941 AAGATACCCACACCCCTCTC 58.119 55.000 0.00 0.00 0.00 3.20
725 738 2.361085 AAAGATACCCACACCCCTCT 57.639 50.000 0.00 0.00 0.00 3.69
726 739 3.089284 CAAAAAGATACCCACACCCCTC 58.911 50.000 0.00 0.00 0.00 4.30
727 740 2.821625 GCAAAAAGATACCCACACCCCT 60.822 50.000 0.00 0.00 0.00 4.79
728 741 1.548719 GCAAAAAGATACCCACACCCC 59.451 52.381 0.00 0.00 0.00 4.95
729 742 2.243810 TGCAAAAAGATACCCACACCC 58.756 47.619 0.00 0.00 0.00 4.61
730 743 4.329462 TTTGCAAAAAGATACCCACACC 57.671 40.909 10.02 0.00 0.00 4.16
731 744 6.859420 AATTTTGCAAAAAGATACCCACAC 57.141 33.333 27.10 0.00 0.00 3.82
732 745 8.370940 TGATAATTTTGCAAAAAGATACCCACA 58.629 29.630 27.10 13.68 0.00 4.17
733 746 8.770438 TGATAATTTTGCAAAAAGATACCCAC 57.230 30.769 27.10 11.67 0.00 4.61
754 767 9.868160 TCTGACAGATAGGAAGAAACTATGATA 57.132 33.333 0.00 0.00 31.58 2.15
755 768 8.774546 TCTGACAGATAGGAAGAAACTATGAT 57.225 34.615 0.00 0.00 31.58 2.45
756 769 8.774546 ATCTGACAGATAGGAAGAAACTATGA 57.225 34.615 16.51 0.00 32.12 2.15
763 776 9.434275 TGGTTTATATCTGACAGATAGGAAGAA 57.566 33.333 25.32 14.33 40.23 2.52
764 777 9.083422 CTGGTTTATATCTGACAGATAGGAAGA 57.917 37.037 25.32 8.28 40.23 2.87
765 778 9.083422 TCTGGTTTATATCTGACAGATAGGAAG 57.917 37.037 25.32 17.10 40.23 3.46
766 779 8.861086 GTCTGGTTTATATCTGACAGATAGGAA 58.139 37.037 25.32 19.45 40.23 3.36
767 780 7.175119 CGTCTGGTTTATATCTGACAGATAGGA 59.825 40.741 25.32 15.59 40.23 2.94
768 781 7.309177 CGTCTGGTTTATATCTGACAGATAGG 58.691 42.308 25.32 7.58 40.23 2.57
769 782 7.309177 CCGTCTGGTTTATATCTGACAGATAG 58.691 42.308 25.32 14.64 40.23 2.08
770 783 6.294564 GCCGTCTGGTTTATATCTGACAGATA 60.295 42.308 23.99 23.99 38.37 1.98
771 784 5.509840 GCCGTCTGGTTTATATCTGACAGAT 60.510 44.000 21.31 21.31 37.32 2.90
772 785 4.202121 GCCGTCTGGTTTATATCTGACAGA 60.202 45.833 7.80 7.80 37.67 3.41
773 786 4.051922 GCCGTCTGGTTTATATCTGACAG 58.948 47.826 0.00 0.00 37.67 3.51
774 787 3.181469 GGCCGTCTGGTTTATATCTGACA 60.181 47.826 0.00 0.00 37.67 3.58
775 788 3.069729 AGGCCGTCTGGTTTATATCTGAC 59.930 47.826 0.00 0.00 37.67 3.51
776 789 3.305720 AGGCCGTCTGGTTTATATCTGA 58.694 45.455 0.00 0.00 37.67 3.27
777 790 3.753294 AGGCCGTCTGGTTTATATCTG 57.247 47.619 0.00 0.00 37.67 2.90
778 791 6.153000 CAGTATAGGCCGTCTGGTTTATATCT 59.847 42.308 0.00 0.00 37.67 1.98
779 792 6.152323 TCAGTATAGGCCGTCTGGTTTATATC 59.848 42.308 15.44 0.58 37.67 1.63
780 793 6.014647 TCAGTATAGGCCGTCTGGTTTATAT 58.985 40.000 15.44 0.76 37.67 0.86
781 794 5.387788 TCAGTATAGGCCGTCTGGTTTATA 58.612 41.667 15.44 1.16 37.67 0.98
782 795 4.220724 TCAGTATAGGCCGTCTGGTTTAT 58.779 43.478 15.44 1.98 37.67 1.40
783 796 3.634504 TCAGTATAGGCCGTCTGGTTTA 58.365 45.455 15.44 0.00 37.67 2.01
784 797 2.463752 TCAGTATAGGCCGTCTGGTTT 58.536 47.619 15.44 0.00 37.67 3.27
785 798 2.154567 TCAGTATAGGCCGTCTGGTT 57.845 50.000 15.44 0.00 37.67 3.67
786 799 2.032620 CTTCAGTATAGGCCGTCTGGT 58.967 52.381 15.44 0.00 37.67 4.00
787 800 1.341531 CCTTCAGTATAGGCCGTCTGG 59.658 57.143 15.44 0.00 38.77 3.86
788 801 2.307768 TCCTTCAGTATAGGCCGTCTG 58.692 52.381 0.00 5.15 32.59 3.51
789 802 2.750141 TCCTTCAGTATAGGCCGTCT 57.250 50.000 0.00 0.00 32.59 4.18
790 803 2.891580 TCATCCTTCAGTATAGGCCGTC 59.108 50.000 0.00 0.00 32.59 4.79
791 804 2.628657 GTCATCCTTCAGTATAGGCCGT 59.371 50.000 0.00 0.00 32.59 5.68
792 805 2.628178 TGTCATCCTTCAGTATAGGCCG 59.372 50.000 0.00 0.00 32.59 6.13
793 806 3.898123 TCTGTCATCCTTCAGTATAGGCC 59.102 47.826 0.00 0.00 33.89 5.19
794 807 4.342378 TGTCTGTCATCCTTCAGTATAGGC 59.658 45.833 0.00 0.00 33.89 3.93
795 808 5.360999 TGTGTCTGTCATCCTTCAGTATAGG 59.639 44.000 0.00 0.00 33.89 2.57
796 809 6.269315 GTGTGTCTGTCATCCTTCAGTATAG 58.731 44.000 0.00 0.00 33.89 1.31
797 810 5.127194 GGTGTGTCTGTCATCCTTCAGTATA 59.873 44.000 0.00 0.00 33.89 1.47
798 811 4.081420 GGTGTGTCTGTCATCCTTCAGTAT 60.081 45.833 0.00 0.00 33.89 2.12
799 812 3.258372 GGTGTGTCTGTCATCCTTCAGTA 59.742 47.826 0.00 0.00 33.89 2.74
800 813 2.037772 GGTGTGTCTGTCATCCTTCAGT 59.962 50.000 0.00 0.00 33.89 3.41
801 814 2.037641 TGGTGTGTCTGTCATCCTTCAG 59.962 50.000 0.00 0.00 0.00 3.02
802 815 2.046292 TGGTGTGTCTGTCATCCTTCA 58.954 47.619 0.00 0.00 0.00 3.02
803 816 2.839486 TGGTGTGTCTGTCATCCTTC 57.161 50.000 0.00 0.00 0.00 3.46
804 817 2.639347 TGATGGTGTGTCTGTCATCCTT 59.361 45.455 0.00 0.00 36.21 3.36
805 818 2.259917 TGATGGTGTGTCTGTCATCCT 58.740 47.619 0.00 0.00 36.21 3.24
806 819 2.768253 TGATGGTGTGTCTGTCATCC 57.232 50.000 0.00 0.00 36.21 3.51
807 820 2.862536 CGATGATGGTGTGTCTGTCATC 59.137 50.000 0.00 0.00 40.92 2.92
808 821 2.234661 ACGATGATGGTGTGTCTGTCAT 59.765 45.455 0.00 0.00 32.59 3.06
809 822 1.618343 ACGATGATGGTGTGTCTGTCA 59.382 47.619 0.00 0.00 0.00 3.58
810 823 2.263077 GACGATGATGGTGTGTCTGTC 58.737 52.381 0.00 0.00 0.00 3.51
811 824 1.618343 TGACGATGATGGTGTGTCTGT 59.382 47.619 0.00 0.00 0.00 3.41
812 825 2.368655 TGACGATGATGGTGTGTCTG 57.631 50.000 0.00 0.00 0.00 3.51
813 826 2.300152 AGTTGACGATGATGGTGTGTCT 59.700 45.455 0.00 0.00 0.00 3.41
814 827 2.413112 CAGTTGACGATGATGGTGTGTC 59.587 50.000 0.00 0.00 0.00 3.67
815 828 2.037121 TCAGTTGACGATGATGGTGTGT 59.963 45.455 0.00 0.00 0.00 3.72
816 829 2.669924 CTCAGTTGACGATGATGGTGTG 59.330 50.000 0.00 0.00 0.00 3.82
817 830 2.300152 ACTCAGTTGACGATGATGGTGT 59.700 45.455 0.00 0.00 0.00 4.16
818 831 2.964740 ACTCAGTTGACGATGATGGTG 58.035 47.619 0.00 0.00 0.00 4.17
819 832 3.685139 AACTCAGTTGACGATGATGGT 57.315 42.857 0.00 0.00 0.00 3.55
820 833 5.362556 AAAAACTCAGTTGACGATGATGG 57.637 39.130 0.00 0.00 0.00 3.51
839 852 8.974292 ATAGCTCATCTCTACCCCTATAAAAA 57.026 34.615 0.00 0.00 0.00 1.94
840 853 8.177456 TGATAGCTCATCTCTACCCCTATAAAA 58.823 37.037 0.00 0.00 34.46 1.52
841 854 7.616150 GTGATAGCTCATCTCTACCCCTATAAA 59.384 40.741 0.00 0.00 34.46 1.40
842 855 7.036498 AGTGATAGCTCATCTCTACCCCTATAA 60.036 40.741 0.00 0.00 36.06 0.98
843 856 6.448714 AGTGATAGCTCATCTCTACCCCTATA 59.551 42.308 0.00 0.00 36.06 1.31
844 857 5.255207 AGTGATAGCTCATCTCTACCCCTAT 59.745 44.000 0.00 0.00 36.06 2.57
845 858 4.604050 AGTGATAGCTCATCTCTACCCCTA 59.396 45.833 0.00 0.00 36.06 3.53
846 859 3.401002 AGTGATAGCTCATCTCTACCCCT 59.599 47.826 0.00 0.00 36.06 4.79
847 860 3.773560 AGTGATAGCTCATCTCTACCCC 58.226 50.000 0.00 0.00 36.06 4.95
848 861 4.219725 GGAAGTGATAGCTCATCTCTACCC 59.780 50.000 0.00 1.30 36.66 3.69
849 862 4.830046 TGGAAGTGATAGCTCATCTCTACC 59.170 45.833 0.00 0.00 36.66 3.18
850 863 6.264292 TCTTGGAAGTGATAGCTCATCTCTAC 59.736 42.308 0.00 0.00 36.66 2.59
851 864 6.368805 TCTTGGAAGTGATAGCTCATCTCTA 58.631 40.000 0.00 0.00 36.66 2.43
852 865 5.207354 TCTTGGAAGTGATAGCTCATCTCT 58.793 41.667 0.00 0.00 38.78 3.10
853 866 5.528043 TCTTGGAAGTGATAGCTCATCTC 57.472 43.478 0.00 0.00 34.46 2.75
854 867 5.946942 TTCTTGGAAGTGATAGCTCATCT 57.053 39.130 0.00 0.00 34.46 2.90
855 868 8.845413 ATTATTCTTGGAAGTGATAGCTCATC 57.155 34.615 0.00 0.00 32.98 2.92
878 891 1.340248 CTCCGTCCACCGCTACATATT 59.660 52.381 0.00 0.00 34.38 1.28
982 999 3.600388 AGATCGAACTAACAAAGGCTGG 58.400 45.455 0.00 0.00 0.00 4.85
994 1011 2.557056 TGAAAGTCCACGAGATCGAACT 59.443 45.455 9.58 0.00 43.02 3.01
995 1012 2.662156 GTGAAAGTCCACGAGATCGAAC 59.338 50.000 9.58 4.42 43.02 3.95
996 1013 2.352421 GGTGAAAGTCCACGAGATCGAA 60.352 50.000 9.58 0.00 43.02 3.71
997 1014 1.201647 GGTGAAAGTCCACGAGATCGA 59.798 52.381 9.58 0.00 43.02 3.59
1002 1019 0.249741 AACCGGTGAAAGTCCACGAG 60.250 55.000 8.52 0.00 37.91 4.18
1005 1022 1.804748 GATGAACCGGTGAAAGTCCAC 59.195 52.381 8.52 0.00 36.37 4.02
1010 1027 3.375299 GGATCTTGATGAACCGGTGAAAG 59.625 47.826 8.52 8.22 0.00 2.62
1019 1036 2.476185 CGCCGTTTGGATCTTGATGAAC 60.476 50.000 0.00 0.00 37.49 3.18
1046 1063 4.060038 TCTAATTCTGCCTTGGATCGTC 57.940 45.455 0.00 0.00 0.00 4.20
1070 1087 1.530655 AGGCAGGGGGAACAAAACG 60.531 57.895 0.00 0.00 0.00 3.60
1114 1133 1.153005 CCTCCTCTGCCTCCATTGC 60.153 63.158 0.00 0.00 0.00 3.56
1116 1135 1.083706 ACCCTCCTCTGCCTCCATT 59.916 57.895 0.00 0.00 0.00 3.16
1272 1294 1.970917 GATTCCTGTTGCTGCCGTCG 61.971 60.000 0.00 0.00 0.00 5.12
1308 1330 2.223433 GGAAAGGATGCGCAAGATTGAG 60.223 50.000 17.11 0.00 43.02 3.02
1412 1434 2.809174 CGTCGATGCGCTGGTTGA 60.809 61.111 9.73 1.10 0.00 3.18
1548 1574 2.039084 AGGCAGAGTTACTCCAAGTTGG 59.961 50.000 16.36 16.36 39.43 3.77
1590 1616 1.959085 CACCACATTGGACAGGTGC 59.041 57.895 0.00 0.00 44.25 5.01
2004 3728 6.829849 TGATGGATACTGACATCTGCATAAA 58.170 36.000 0.00 0.00 42.96 1.40
2744 4486 2.032302 TCGCAAAGCACGCTAAGAAAAA 59.968 40.909 0.00 0.00 0.00 1.94
3553 5397 7.147742 CCCAAAAGTTGCAATATATTACCCACT 60.148 37.037 0.59 0.00 0.00 4.00
4040 5911 3.181436 GGGTTTATTAGTTAGGCCCCCTC 60.181 52.174 0.00 0.00 34.61 4.30
4051 5922 3.390819 ACCTCCATCCGGGTTTATTAGT 58.609 45.455 0.00 0.00 38.11 2.24
4123 5994 1.529744 ACTCCCTCCTTCCCAAAACA 58.470 50.000 0.00 0.00 0.00 2.83
4176 6047 3.888930 CAGTGGAACAACCCTTGTAACAT 59.111 43.478 0.00 0.00 44.59 2.71
4290 6166 3.370672 GCTAAAATTTTGGAACGGCATGG 59.629 43.478 17.51 0.00 0.00 3.66
4498 6375 4.353437 GCTGCTGGTTGCCACTGC 62.353 66.667 0.00 0.00 42.00 4.40
4528 6405 2.010145 TGAGATGCTCGTTTAGGCAC 57.990 50.000 0.00 0.00 41.39 5.01
4603 6480 2.425143 TTGCTCCAGCCATAAGGAAG 57.575 50.000 0.00 0.00 41.18 3.46
5041 6926 6.799441 CGAGTGAATCTATCTATGCACAGTAC 59.201 42.308 0.00 0.00 37.81 2.73
5107 6992 1.376424 AGGTCAAGTCCGCAGCATG 60.376 57.895 0.00 0.00 40.87 4.06
5108 6993 1.376424 CAGGTCAAGTCCGCAGCAT 60.376 57.895 0.00 0.00 0.00 3.79
5165 7050 5.592282 TGAGCTTTGTCACAGATAAAACCAA 59.408 36.000 0.00 0.00 0.00 3.67
5169 7054 7.566760 TTCTTGAGCTTTGTCACAGATAAAA 57.433 32.000 0.00 0.00 0.00 1.52
5186 7071 8.604890 CATCATATATACATGCAGCTTCTTGAG 58.395 37.037 6.26 0.00 0.00 3.02
5187 7072 8.098912 ACATCATATATACATGCAGCTTCTTGA 58.901 33.333 6.26 0.00 0.00 3.02
5188 7073 8.175716 CACATCATATATACATGCAGCTTCTTG 58.824 37.037 0.00 0.00 0.00 3.02
5189 7074 8.098912 TCACATCATATATACATGCAGCTTCTT 58.901 33.333 0.00 0.00 0.00 2.52
5190 7075 7.618137 TCACATCATATATACATGCAGCTTCT 58.382 34.615 0.00 0.00 0.00 2.85
5191 7076 7.838771 TCACATCATATATACATGCAGCTTC 57.161 36.000 0.00 0.00 0.00 3.86
5192 7077 8.674607 CAATCACATCATATATACATGCAGCTT 58.325 33.333 0.00 0.00 0.00 3.74
5454 7339 8.348983 ACGTGGTTTATTCATCGATTAACTAG 57.651 34.615 0.00 0.00 0.00 2.57
5493 7378 2.912025 AAGGCGGTTGGGCACAAG 60.912 61.111 0.00 0.00 45.36 3.16
5527 7412 1.464608 CATTACGGTGAGCCAACAGTG 59.535 52.381 2.99 0.00 30.82 3.66
5606 7491 9.829507 TGAAAAAGTGATGTGAATAACCATTTT 57.170 25.926 0.00 0.00 0.00 1.82
5634 7519 6.549433 AGGACGTATGGGTATTCAAGTTAA 57.451 37.500 0.00 0.00 0.00 2.01
5661 7546 1.322338 CCGTGCGTGTAATTTACTCCG 59.678 52.381 7.99 10.35 0.00 4.63
5685 7570 2.032681 GCCGACAAGTTCCTGCCT 59.967 61.111 0.00 0.00 0.00 4.75
5686 7571 3.056328 GGCCGACAAGTTCCTGCC 61.056 66.667 0.00 0.00 32.89 4.85
5687 7572 2.032681 AGGCCGACAAGTTCCTGC 59.967 61.111 0.00 0.00 0.00 4.85
5688 7573 2.328099 GCAGGCCGACAAGTTCCTG 61.328 63.158 0.00 3.67 46.63 3.86
5689 7574 1.192146 TAGCAGGCCGACAAGTTCCT 61.192 55.000 0.00 0.00 0.00 3.36
5696 7581 2.027561 ACTGTTTTATAGCAGGCCGACA 60.028 45.455 0.00 0.00 37.07 4.35
5722 8149 0.389817 TTGGAGCGATCCACAAGTCG 60.390 55.000 24.58 0.00 39.90 4.18
5748 8175 2.213499 AGCGTAATGGCAAGTATGAGC 58.787 47.619 0.00 0.00 34.64 4.26
5765 8192 1.989864 TGCTGAAACGTATGTGTAGCG 59.010 47.619 11.52 0.00 34.01 4.26
5862 8301 2.544267 GGAAATTTGACTATCCCGAGCG 59.456 50.000 0.00 0.00 0.00 5.03
5871 8310 3.245479 GGGTTGGAGGGGAAATTTGACTA 60.245 47.826 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.