Multiple sequence alignment - TraesCS2D01G074700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G074700 chr2D 100.000 4320 0 0 605 4924 31951410 31947091 0.000000e+00 7978.0
1 TraesCS2D01G074700 chr2D 94.521 803 43 1 3117 3918 31887539 31886737 0.000000e+00 1238.0
2 TraesCS2D01G074700 chr2D 94.147 803 45 2 3117 3918 32029103 32028302 0.000000e+00 1221.0
3 TraesCS2D01G074700 chr2D 87.815 993 55 33 2146 3117 31888633 31887686 0.000000e+00 1103.0
4 TraesCS2D01G074700 chr2D 95.414 567 23 3 2556 3121 32029810 32029246 0.000000e+00 900.0
5 TraesCS2D01G074700 chr2D 88.152 709 55 12 858 1551 31889897 31889203 0.000000e+00 817.0
6 TraesCS2D01G074700 chr2D 86.169 723 50 21 807 1486 32031654 32030939 0.000000e+00 736.0
7 TraesCS2D01G074700 chr2D 91.061 358 19 4 2169 2524 32030228 32029882 5.770000e-129 472.0
8 TraesCS2D01G074700 chr2D 87.879 396 37 5 1564 1948 32030787 32030392 5.810000e-124 455.0
9 TraesCS2D01G074700 chr2D 100.000 221 0 0 1 221 31952014 31951794 4.590000e-110 409.0
10 TraesCS2D01G074700 chr2D 86.280 328 19 8 1564 1877 31889143 31888828 2.840000e-87 333.0
11 TraesCS2D01G074700 chr2D 95.570 158 7 0 2149 2306 32030390 32030233 2.270000e-63 254.0
12 TraesCS2D01G074700 chr2D 89.796 196 10 3 1930 2115 31888827 31888632 4.920000e-60 243.0
13 TraesCS2D01G074700 chr2D 94.017 117 4 3 3918 4034 31926466 31926353 1.820000e-39 174.0
14 TraesCS2D01G074700 chr2D 74.852 338 48 26 4089 4401 122860330 122860005 8.660000e-23 119.0
15 TraesCS2D01G074700 chr2D 98.361 61 1 0 4028 4088 31913242 31913182 1.870000e-19 108.0
16 TraesCS2D01G074700 chr2D 87.879 66 6 1 4094 4159 651642618 651642681 5.290000e-10 76.8
17 TraesCS2D01G074700 chr2B 89.523 1613 91 45 1557 3121 52600634 52599052 0.000000e+00 1971.0
18 TraesCS2D01G074700 chr2B 91.288 1297 47 24 1551 2813 52348766 52350030 0.000000e+00 1709.0
19 TraesCS2D01G074700 chr2B 98.628 802 11 0 3117 3918 52350662 52351463 0.000000e+00 1421.0
20 TraesCS2D01G074700 chr2B 94.271 803 40 2 3117 3918 52598909 52598112 0.000000e+00 1223.0
21 TraesCS2D01G074700 chr2B 86.978 814 69 19 759 1551 52347920 52348717 0.000000e+00 881.0
22 TraesCS2D01G074700 chr2B 88.331 617 50 13 850 1456 52601401 52600797 0.000000e+00 721.0
23 TraesCS2D01G074700 chr2B 96.845 317 9 1 2805 3121 52350204 52350519 3.380000e-146 529.0
24 TraesCS2D01G074700 chr2A 88.128 1592 102 37 1563 3117 34092616 34091075 0.000000e+00 1812.0
25 TraesCS2D01G074700 chr2A 94.271 803 45 1 3117 3918 34090928 34090126 0.000000e+00 1227.0
26 TraesCS2D01G074700 chr2A 85.960 755 65 18 768 1486 34093516 34092767 0.000000e+00 769.0
27 TraesCS2D01G074700 chr2A 93.567 171 7 1 3918 4088 134574495 134574329 8.180000e-63 252.0
28 TraesCS2D01G074700 chr2A 92.941 170 8 3 3919 4088 134589384 134589219 1.370000e-60 244.0
29 TraesCS2D01G074700 chr2A 80.967 331 34 17 2146 2470 34092384 34092077 8.240000e-58 235.0
30 TraesCS2D01G074700 chr2A 80.220 91 15 2 4094 4183 765760871 765760783 1.140000e-06 65.8
31 TraesCS2D01G074700 chr4D 84.080 848 69 27 4083 4921 56703700 56702910 0.000000e+00 758.0
32 TraesCS2D01G074700 chr6A 83.137 765 81 26 4171 4923 2872971 2873699 0.000000e+00 654.0
33 TraesCS2D01G074700 chr6A 97.849 93 2 0 3918 4010 12628707 12628615 1.420000e-35 161.0
34 TraesCS2D01G074700 chr6A 81.967 122 18 2 81 198 254962701 254962580 3.140000e-17 100.0
35 TraesCS2D01G074700 chr6A 96.296 54 2 0 4035 4088 12628264 12628211 6.790000e-14 89.8
36 TraesCS2D01G074700 chr4A 95.322 171 6 2 3918 4088 417152468 417152636 2.260000e-68 270.0
37 TraesCS2D01G074700 chr4A 94.828 174 6 2 3915 4088 417147802 417147972 8.120000e-68 268.0
38 TraesCS2D01G074700 chr4A 81.227 277 45 6 1087 1361 629436324 629436053 2.980000e-52 217.0
39 TraesCS2D01G074700 chr4A 82.743 226 34 4 1136 1360 629424342 629424121 3.890000e-46 196.0
40 TraesCS2D01G074700 chr4A 84.746 177 20 6 7 178 478073997 478074171 2.360000e-38 171.0
41 TraesCS2D01G074700 chr4A 83.636 165 20 6 39 198 596709954 596710116 1.100000e-31 148.0
42 TraesCS2D01G074700 chr4A 85.246 122 10 5 59 173 592430364 592430244 8.660000e-23 119.0
43 TraesCS2D01G074700 chr4A 85.246 122 9 6 59 173 592707345 592707226 3.110000e-22 117.0
44 TraesCS2D01G074700 chr4A 85.246 122 9 6 59 173 592996804 592996685 3.110000e-22 117.0
45 TraesCS2D01G074700 chr4A 82.667 75 9 4 762 835 698879186 698879115 4.110000e-06 63.9
46 TraesCS2D01G074700 chr3B 81.341 343 43 11 4088 4422 820706941 820706612 4.890000e-65 259.0
47 TraesCS2D01G074700 chr5D 86.512 215 19 7 4315 4526 537399813 537400020 1.380000e-55 228.0
48 TraesCS2D01G074700 chr5D 80.216 278 43 8 1087 1361 539075085 539075353 1.080000e-46 198.0
49 TraesCS2D01G074700 chr5D 83.920 199 30 2 1 198 47308356 47308159 6.510000e-44 189.0
50 TraesCS2D01G074700 chr5D 85.606 132 19 0 2573 2704 286928993 286928862 6.650000e-29 139.0
51 TraesCS2D01G074700 chr5D 85.915 71 8 1 4086 4156 496947111 496947179 1.900000e-09 75.0
52 TraesCS2D01G074700 chr5A 83.556 225 28 4 1136 1360 379021834 379021619 8.360000e-48 202.0
53 TraesCS2D01G074700 chr5A 82.482 137 20 4 2573 2707 379020369 379020235 3.110000e-22 117.0
54 TraesCS2D01G074700 chr5B 91.367 139 7 4 4318 4455 677875061 677874927 8.420000e-43 185.0
55 TraesCS2D01G074700 chr5B 85.075 134 16 4 2573 2704 325934833 325934702 3.090000e-27 134.0
56 TraesCS2D01G074700 chr6D 84.242 165 19 6 39 198 159231532 159231370 2.370000e-33 154.0
57 TraesCS2D01G074700 chr6D 80.978 184 28 6 4089 4271 36290399 36290222 6.650000e-29 139.0
58 TraesCS2D01G074700 chr1B 84.242 165 19 6 39 198 31365780 31365618 2.370000e-33 154.0
59 TraesCS2D01G074700 chr1B 94.118 51 2 1 4083 4132 584796473 584796423 5.290000e-10 76.8
60 TraesCS2D01G074700 chr7A 85.161 155 16 6 39 188 105216855 105217007 8.540000e-33 152.0
61 TraesCS2D01G074700 chrUn 83.030 165 21 6 39 198 134113675 134113837 5.140000e-30 143.0
62 TraesCS2D01G074700 chr7D 83.871 93 13 1 4079 4171 134492977 134492887 2.440000e-13 87.9
63 TraesCS2D01G074700 chr3D 89.552 67 5 1 4093 4159 275561481 275561545 3.160000e-12 84.2
64 TraesCS2D01G074700 chr6B 81.481 81 9 6 759 836 20020059 20020136 1.480000e-05 62.1
65 TraesCS2D01G074700 chr6B 81.250 80 10 5 759 836 20080644 20080720 5.320000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G074700 chr2D 31947091 31952014 4923 True 4193.50 7978 100.000000 1 4924 2 chr2D.!!$R5 4923
1 TraesCS2D01G074700 chr2D 31886737 31889897 3160 True 746.80 1238 89.312800 858 3918 5 chr2D.!!$R4 3060
2 TraesCS2D01G074700 chr2D 32028302 32031654 3352 True 673.00 1221 91.706667 807 3918 6 chr2D.!!$R6 3111
3 TraesCS2D01G074700 chr2B 52598112 52601401 3289 True 1305.00 1971 90.708333 850 3918 3 chr2B.!!$R1 3068
4 TraesCS2D01G074700 chr2B 52347920 52351463 3543 False 1135.00 1709 93.434750 759 3918 4 chr2B.!!$F1 3159
5 TraesCS2D01G074700 chr2A 34090126 34093516 3390 True 1010.75 1812 87.331500 768 3918 4 chr2A.!!$R4 3150
6 TraesCS2D01G074700 chr4D 56702910 56703700 790 True 758.00 758 84.080000 4083 4921 1 chr4D.!!$R1 838
7 TraesCS2D01G074700 chr6A 2872971 2873699 728 False 654.00 654 83.137000 4171 4923 1 chr6A.!!$F1 752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 218 0.035458 CGGGTCTGTCTTCTTGGCTT 59.965 55.0 0.00 0.00 0.00 4.35 F
995 1031 0.319555 CGAGCAGTTTTCGGTCTGGA 60.320 55.0 0.00 0.00 34.56 3.86 F
1451 1514 0.519961 GAACCCGTTTGATCCCAACG 59.480 55.0 16.59 16.59 30.88 4.10 F
2143 2340 0.673333 TGCAATCAAGCGACCATCGT 60.673 50.0 0.00 0.00 42.81 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1042 1078 0.028770 GTCGCGAGATGTGAGAGGAG 59.971 60.000 10.24 0.0 45.19 3.69 R
2143 2340 1.484038 AGAGTTTTGTTTGGCTGCCA 58.516 45.000 19.30 19.3 0.00 4.92 R
3019 3610 2.301346 CCTGAAGGTCAAGCAACAACT 58.699 47.619 0.00 0.0 0.00 3.16 R
4053 4940 0.171231 GGAAAACAAGATCGGGCTGC 59.829 55.000 0.00 0.0 0.00 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.806203 TGAATAGCATGATTTAATTCAGGTTTG 57.194 29.630 12.12 4.72 32.99 2.93
32 33 9.252962 GAATAGCATGATTTAATTCAGGTTTGG 57.747 33.333 12.12 0.00 30.34 3.28
33 34 6.855763 AGCATGATTTAATTCAGGTTTGGA 57.144 33.333 12.12 0.00 30.34 3.53
34 35 6.870769 AGCATGATTTAATTCAGGTTTGGAG 58.129 36.000 12.12 0.00 30.34 3.86
35 36 6.664816 AGCATGATTTAATTCAGGTTTGGAGA 59.335 34.615 12.12 0.00 30.34 3.71
36 37 7.178983 AGCATGATTTAATTCAGGTTTGGAGAA 59.821 33.333 12.12 0.00 30.34 2.87
37 38 7.983484 GCATGATTTAATTCAGGTTTGGAGAAT 59.017 33.333 12.12 0.00 33.68 2.40
38 39 9.880157 CATGATTTAATTCAGGTTTGGAGAATT 57.120 29.630 6.26 0.00 42.65 2.17
81 82 6.855836 CATTGTCTAAAATGCCATACTGTGT 58.144 36.000 0.00 0.00 31.19 3.72
82 83 7.984391 CATTGTCTAAAATGCCATACTGTGTA 58.016 34.615 0.00 0.00 31.19 2.90
83 84 7.609760 TTGTCTAAAATGCCATACTGTGTAG 57.390 36.000 0.00 0.00 0.00 2.74
84 85 6.707290 TGTCTAAAATGCCATACTGTGTAGT 58.293 36.000 0.00 0.00 40.99 2.73
85 86 7.165485 TGTCTAAAATGCCATACTGTGTAGTT 58.835 34.615 0.00 0.00 38.36 2.24
86 87 7.333423 TGTCTAAAATGCCATACTGTGTAGTTC 59.667 37.037 0.00 0.00 38.36 3.01
87 88 5.545658 AAAATGCCATACTGTGTAGTTCG 57.454 39.130 0.00 0.00 38.36 3.95
88 89 4.465632 AATGCCATACTGTGTAGTTCGA 57.534 40.909 0.00 0.00 38.36 3.71
89 90 3.226346 TGCCATACTGTGTAGTTCGAC 57.774 47.619 0.00 0.00 38.36 4.20
90 91 2.559231 TGCCATACTGTGTAGTTCGACA 59.441 45.455 0.00 0.00 38.36 4.35
91 92 3.179830 GCCATACTGTGTAGTTCGACAG 58.820 50.000 0.00 0.00 44.38 3.51
92 93 3.119602 GCCATACTGTGTAGTTCGACAGA 60.120 47.826 6.68 0.00 41.90 3.41
93 94 4.617530 GCCATACTGTGTAGTTCGACAGAA 60.618 45.833 6.68 0.00 41.90 3.02
102 103 3.474007 TTCGACAGAACAGAGCGAC 57.526 52.632 0.00 0.00 0.00 5.19
103 104 0.666374 TTCGACAGAACAGAGCGACA 59.334 50.000 0.00 0.00 0.00 4.35
104 105 0.666374 TCGACAGAACAGAGCGACAA 59.334 50.000 0.00 0.00 0.00 3.18
105 106 1.066454 TCGACAGAACAGAGCGACAAA 59.934 47.619 0.00 0.00 0.00 2.83
106 107 1.858458 CGACAGAACAGAGCGACAAAA 59.142 47.619 0.00 0.00 0.00 2.44
107 108 2.347661 CGACAGAACAGAGCGACAAAAC 60.348 50.000 0.00 0.00 0.00 2.43
108 109 2.607635 GACAGAACAGAGCGACAAAACA 59.392 45.455 0.00 0.00 0.00 2.83
109 110 3.206150 ACAGAACAGAGCGACAAAACAT 58.794 40.909 0.00 0.00 0.00 2.71
110 111 4.377021 ACAGAACAGAGCGACAAAACATA 58.623 39.130 0.00 0.00 0.00 2.29
111 112 4.449068 ACAGAACAGAGCGACAAAACATAG 59.551 41.667 0.00 0.00 0.00 2.23
112 113 4.449068 CAGAACAGAGCGACAAAACATAGT 59.551 41.667 0.00 0.00 0.00 2.12
113 114 5.050091 CAGAACAGAGCGACAAAACATAGTT 60.050 40.000 0.00 0.00 0.00 2.24
114 115 4.992381 ACAGAGCGACAAAACATAGTTC 57.008 40.909 0.00 0.00 0.00 3.01
115 116 3.746492 ACAGAGCGACAAAACATAGTTCC 59.254 43.478 0.00 0.00 0.00 3.62
116 117 2.993899 AGAGCGACAAAACATAGTTCCG 59.006 45.455 0.00 0.00 0.00 4.30
117 118 2.735134 GAGCGACAAAACATAGTTCCGT 59.265 45.455 0.00 0.00 0.00 4.69
118 119 3.916761 AGCGACAAAACATAGTTCCGTA 58.083 40.909 0.00 0.00 0.00 4.02
119 120 4.309099 AGCGACAAAACATAGTTCCGTAA 58.691 39.130 0.00 0.00 0.00 3.18
120 121 4.387862 AGCGACAAAACATAGTTCCGTAAG 59.612 41.667 0.00 0.00 0.00 2.34
121 122 4.151157 GCGACAAAACATAGTTCCGTAAGT 59.849 41.667 0.00 0.00 0.00 2.24
122 123 5.345741 GCGACAAAACATAGTTCCGTAAGTA 59.654 40.000 0.00 0.00 0.00 2.24
123 124 6.128849 GCGACAAAACATAGTTCCGTAAGTAA 60.129 38.462 0.00 0.00 0.00 2.24
124 125 7.412237 GCGACAAAACATAGTTCCGTAAGTAAT 60.412 37.037 0.00 0.00 0.00 1.89
125 126 8.437742 CGACAAAACATAGTTCCGTAAGTAATT 58.562 33.333 0.00 0.00 0.00 1.40
156 157 8.985315 ATGTTATTTGATGTACATGTCATCCT 57.015 30.769 23.66 15.76 40.38 3.24
157 158 8.806429 TGTTATTTGATGTACATGTCATCCTT 57.194 30.769 23.66 15.64 40.38 3.36
158 159 9.898152 TGTTATTTGATGTACATGTCATCCTTA 57.102 29.630 23.66 14.89 40.38 2.69
160 161 6.925610 TTTGATGTACATGTCATCCTTAGC 57.074 37.500 23.66 0.00 40.38 3.09
161 162 5.876651 TGATGTACATGTCATCCTTAGCT 57.123 39.130 23.66 0.00 40.38 3.32
162 163 5.847304 TGATGTACATGTCATCCTTAGCTC 58.153 41.667 23.66 0.00 40.38 4.09
163 164 5.600069 TGATGTACATGTCATCCTTAGCTCT 59.400 40.000 23.66 0.00 40.38 4.09
164 165 5.521906 TGTACATGTCATCCTTAGCTCTC 57.478 43.478 0.00 0.00 0.00 3.20
165 166 4.342378 TGTACATGTCATCCTTAGCTCTCC 59.658 45.833 0.00 0.00 0.00 3.71
166 167 3.378512 ACATGTCATCCTTAGCTCTCCA 58.621 45.455 0.00 0.00 0.00 3.86
167 168 3.133721 ACATGTCATCCTTAGCTCTCCAC 59.866 47.826 0.00 0.00 0.00 4.02
168 169 1.751351 TGTCATCCTTAGCTCTCCACG 59.249 52.381 0.00 0.00 0.00 4.94
169 170 1.067821 GTCATCCTTAGCTCTCCACGG 59.932 57.143 0.00 0.00 0.00 4.94
170 171 1.115467 CATCCTTAGCTCTCCACGGT 58.885 55.000 0.00 0.00 0.00 4.83
171 172 1.482593 CATCCTTAGCTCTCCACGGTT 59.517 52.381 0.00 0.00 0.00 4.44
172 173 1.640917 TCCTTAGCTCTCCACGGTTT 58.359 50.000 0.00 0.00 0.00 3.27
173 174 1.275291 TCCTTAGCTCTCCACGGTTTG 59.725 52.381 0.00 0.00 0.00 2.93
174 175 1.079503 CTTAGCTCTCCACGGTTTGC 58.920 55.000 0.00 0.00 0.00 3.68
175 176 0.685097 TTAGCTCTCCACGGTTTGCT 59.315 50.000 0.00 0.00 34.92 3.91
176 177 0.685097 TAGCTCTCCACGGTTTGCTT 59.315 50.000 0.00 0.00 32.72 3.91
177 178 0.179018 AGCTCTCCACGGTTTGCTTT 60.179 50.000 0.00 0.00 0.00 3.51
178 179 0.040067 GCTCTCCACGGTTTGCTTTG 60.040 55.000 0.00 0.00 0.00 2.77
179 180 1.308998 CTCTCCACGGTTTGCTTTGT 58.691 50.000 0.00 0.00 0.00 2.83
180 181 1.676006 CTCTCCACGGTTTGCTTTGTT 59.324 47.619 0.00 0.00 0.00 2.83
181 182 1.403679 TCTCCACGGTTTGCTTTGTTG 59.596 47.619 0.00 0.00 0.00 3.33
182 183 1.403679 CTCCACGGTTTGCTTTGTTGA 59.596 47.619 0.00 0.00 0.00 3.18
183 184 1.133407 TCCACGGTTTGCTTTGTTGAC 59.867 47.619 0.00 0.00 0.00 3.18
184 185 1.555477 CACGGTTTGCTTTGTTGACC 58.445 50.000 0.00 0.00 0.00 4.02
185 186 1.134175 CACGGTTTGCTTTGTTGACCT 59.866 47.619 0.00 0.00 0.00 3.85
186 187 1.134175 ACGGTTTGCTTTGTTGACCTG 59.866 47.619 0.00 0.00 0.00 4.00
187 188 1.134175 CGGTTTGCTTTGTTGACCTGT 59.866 47.619 0.00 0.00 0.00 4.00
188 189 2.794631 CGGTTTGCTTTGTTGACCTGTC 60.795 50.000 0.00 0.00 0.00 3.51
189 190 2.481276 GGTTTGCTTTGTTGACCTGTCC 60.481 50.000 0.00 0.00 0.00 4.02
190 191 1.398692 TTGCTTTGTTGACCTGTCCC 58.601 50.000 0.00 0.00 0.00 4.46
191 192 0.467290 TGCTTTGTTGACCTGTCCCC 60.467 55.000 0.00 0.00 0.00 4.81
192 193 0.467290 GCTTTGTTGACCTGTCCCCA 60.467 55.000 0.00 0.00 0.00 4.96
193 194 1.823250 GCTTTGTTGACCTGTCCCCAT 60.823 52.381 0.00 0.00 0.00 4.00
194 195 1.888512 CTTTGTTGACCTGTCCCCATG 59.111 52.381 0.00 0.00 0.00 3.66
195 196 0.112218 TTGTTGACCTGTCCCCATGG 59.888 55.000 4.14 4.14 0.00 3.66
196 197 1.000896 GTTGACCTGTCCCCATGGG 60.001 63.158 25.30 25.30 46.11 4.00
197 198 1.465188 TTGACCTGTCCCCATGGGT 60.465 57.895 29.33 9.78 44.74 4.51
198 199 1.497309 TTGACCTGTCCCCATGGGTC 61.497 60.000 29.33 20.94 44.74 4.46
199 200 3.009115 ACCTGTCCCCATGGGTCG 61.009 66.667 29.33 15.27 44.74 4.79
200 201 3.797353 CCTGTCCCCATGGGTCGG 61.797 72.222 29.33 23.56 44.74 4.79
201 202 3.797353 CTGTCCCCATGGGTCGGG 61.797 72.222 29.33 14.12 44.74 5.14
202 203 4.667935 TGTCCCCATGGGTCGGGT 62.668 66.667 29.33 0.00 44.74 5.28
203 204 3.793888 GTCCCCATGGGTCGGGTC 61.794 72.222 29.33 8.08 44.74 4.46
204 205 4.019513 TCCCCATGGGTCGGGTCT 62.020 66.667 29.33 0.00 44.74 3.85
205 206 3.797353 CCCCATGGGTCGGGTCTG 61.797 72.222 29.33 7.54 42.77 3.51
206 207 3.009115 CCCATGGGTCGGGTCTGT 61.009 66.667 23.93 0.00 39.05 3.41
207 208 2.584608 CCATGGGTCGGGTCTGTC 59.415 66.667 2.85 0.00 0.00 3.51
208 209 1.990060 CCATGGGTCGGGTCTGTCT 60.990 63.158 2.85 0.00 0.00 3.41
209 210 1.553690 CCATGGGTCGGGTCTGTCTT 61.554 60.000 2.85 0.00 0.00 3.01
210 211 0.108138 CATGGGTCGGGTCTGTCTTC 60.108 60.000 0.00 0.00 0.00 2.87
211 212 0.252284 ATGGGTCGGGTCTGTCTTCT 60.252 55.000 0.00 0.00 0.00 2.85
212 213 0.471211 TGGGTCGGGTCTGTCTTCTT 60.471 55.000 0.00 0.00 0.00 2.52
213 214 0.037232 GGGTCGGGTCTGTCTTCTTG 60.037 60.000 0.00 0.00 0.00 3.02
214 215 0.037232 GGTCGGGTCTGTCTTCTTGG 60.037 60.000 0.00 0.00 0.00 3.61
215 216 0.670854 GTCGGGTCTGTCTTCTTGGC 60.671 60.000 0.00 0.00 0.00 4.52
216 217 0.832135 TCGGGTCTGTCTTCTTGGCT 60.832 55.000 0.00 0.00 0.00 4.75
217 218 0.035458 CGGGTCTGTCTTCTTGGCTT 59.965 55.000 0.00 0.00 0.00 4.35
218 219 1.528129 GGGTCTGTCTTCTTGGCTTG 58.472 55.000 0.00 0.00 0.00 4.01
219 220 1.202818 GGGTCTGTCTTCTTGGCTTGT 60.203 52.381 0.00 0.00 0.00 3.16
220 221 1.876156 GGTCTGTCTTCTTGGCTTGTG 59.124 52.381 0.00 0.00 0.00 3.33
624 625 2.520069 GAGGAGTTCAGACTGTCCAGA 58.480 52.381 11.93 0.10 35.88 3.86
625 626 2.230266 GAGGAGTTCAGACTGTCCAGAC 59.770 54.545 11.93 0.83 35.88 3.51
626 627 1.068194 GGAGTTCAGACTGTCCAGACG 60.068 57.143 3.76 0.00 35.88 4.18
627 628 0.962489 AGTTCAGACTGTCCAGACGG 59.038 55.000 3.76 5.06 43.20 4.79
637 638 3.888934 CTGTCCAGACGGTTGAATTTTG 58.111 45.455 0.00 0.00 33.13 2.44
638 639 3.546724 TGTCCAGACGGTTGAATTTTGA 58.453 40.909 0.00 0.00 0.00 2.69
639 640 3.563808 TGTCCAGACGGTTGAATTTTGAG 59.436 43.478 0.00 0.00 0.00 3.02
640 641 3.058224 GTCCAGACGGTTGAATTTTGAGG 60.058 47.826 0.00 0.00 0.00 3.86
641 642 3.146066 CCAGACGGTTGAATTTTGAGGA 58.854 45.455 0.00 0.00 0.00 3.71
642 643 3.189287 CCAGACGGTTGAATTTTGAGGAG 59.811 47.826 0.00 0.00 0.00 3.69
643 644 3.815401 CAGACGGTTGAATTTTGAGGAGT 59.185 43.478 0.00 0.00 0.00 3.85
644 645 3.815401 AGACGGTTGAATTTTGAGGAGTG 59.185 43.478 0.00 0.00 0.00 3.51
645 646 3.551846 ACGGTTGAATTTTGAGGAGTGT 58.448 40.909 0.00 0.00 0.00 3.55
646 647 4.710324 ACGGTTGAATTTTGAGGAGTGTA 58.290 39.130 0.00 0.00 0.00 2.90
647 648 4.514066 ACGGTTGAATTTTGAGGAGTGTAC 59.486 41.667 0.00 0.00 0.00 2.90
648 649 4.513692 CGGTTGAATTTTGAGGAGTGTACA 59.486 41.667 0.00 0.00 0.00 2.90
649 650 5.008217 CGGTTGAATTTTGAGGAGTGTACAA 59.992 40.000 0.00 0.00 0.00 2.41
650 651 6.459024 CGGTTGAATTTTGAGGAGTGTACAAA 60.459 38.462 0.00 0.00 0.00 2.83
651 652 7.433680 GGTTGAATTTTGAGGAGTGTACAAAT 58.566 34.615 0.00 0.00 34.33 2.32
652 653 8.573035 GGTTGAATTTTGAGGAGTGTACAAATA 58.427 33.333 0.00 0.00 34.33 1.40
653 654 9.394477 GTTGAATTTTGAGGAGTGTACAAATAC 57.606 33.333 0.00 0.00 34.33 1.89
654 655 8.684386 TGAATTTTGAGGAGTGTACAAATACA 57.316 30.769 0.00 0.00 39.06 2.29
666 667 6.078202 TGTACAAATACACCCAAACACATG 57.922 37.500 0.00 0.00 36.34 3.21
667 668 5.828328 TGTACAAATACACCCAAACACATGA 59.172 36.000 0.00 0.00 36.34 3.07
668 669 5.452078 ACAAATACACCCAAACACATGAG 57.548 39.130 0.00 0.00 0.00 2.90
669 670 5.136828 ACAAATACACCCAAACACATGAGA 58.863 37.500 0.00 0.00 0.00 3.27
670 671 5.241506 ACAAATACACCCAAACACATGAGAG 59.758 40.000 0.00 0.00 0.00 3.20
671 672 4.908601 ATACACCCAAACACATGAGAGA 57.091 40.909 0.00 0.00 0.00 3.10
672 673 3.131709 ACACCCAAACACATGAGAGAG 57.868 47.619 0.00 0.00 0.00 3.20
673 674 2.705658 ACACCCAAACACATGAGAGAGA 59.294 45.455 0.00 0.00 0.00 3.10
674 675 3.136443 ACACCCAAACACATGAGAGAGAA 59.864 43.478 0.00 0.00 0.00 2.87
675 676 4.136796 CACCCAAACACATGAGAGAGAAA 58.863 43.478 0.00 0.00 0.00 2.52
676 677 4.763793 CACCCAAACACATGAGAGAGAAAT 59.236 41.667 0.00 0.00 0.00 2.17
677 678 5.939883 CACCCAAACACATGAGAGAGAAATA 59.060 40.000 0.00 0.00 0.00 1.40
678 679 6.430925 CACCCAAACACATGAGAGAGAAATAA 59.569 38.462 0.00 0.00 0.00 1.40
679 680 7.004086 ACCCAAACACATGAGAGAGAAATAAA 58.996 34.615 0.00 0.00 0.00 1.40
680 681 7.040409 ACCCAAACACATGAGAGAGAAATAAAC 60.040 37.037 0.00 0.00 0.00 2.01
681 682 7.175641 CCCAAACACATGAGAGAGAAATAAACT 59.824 37.037 0.00 0.00 0.00 2.66
682 683 8.571336 CCAAACACATGAGAGAGAAATAAACTT 58.429 33.333 0.00 0.00 0.00 2.66
698 699 9.756461 GAAATAAACTTAATCTTGAAGTCGACC 57.244 33.333 13.01 0.00 36.10 4.79
699 700 9.503399 AAATAAACTTAATCTTGAAGTCGACCT 57.497 29.630 13.01 0.00 36.10 3.85
700 701 9.503399 AATAAACTTAATCTTGAAGTCGACCTT 57.497 29.630 13.01 5.94 36.10 3.50
702 703 8.535690 AAACTTAATCTTGAAGTCGACCTTAG 57.464 34.615 13.01 5.13 36.10 2.18
703 704 7.229581 ACTTAATCTTGAAGTCGACCTTAGT 57.770 36.000 13.01 1.62 31.36 2.24
704 705 7.314393 ACTTAATCTTGAAGTCGACCTTAGTC 58.686 38.462 13.01 3.03 31.36 2.59
705 706 5.723672 AATCTTGAAGTCGACCTTAGTCA 57.276 39.130 13.01 5.71 43.73 3.41
706 707 5.923733 ATCTTGAAGTCGACCTTAGTCAT 57.076 39.130 13.01 0.00 43.73 3.06
707 708 5.723672 TCTTGAAGTCGACCTTAGTCATT 57.276 39.130 13.01 0.00 43.73 2.57
708 709 6.097915 TCTTGAAGTCGACCTTAGTCATTT 57.902 37.500 13.01 0.00 43.73 2.32
709 710 5.926542 TCTTGAAGTCGACCTTAGTCATTTG 59.073 40.000 13.01 3.24 43.73 2.32
710 711 5.209818 TGAAGTCGACCTTAGTCATTTGT 57.790 39.130 13.01 0.00 43.73 2.83
711 712 5.227908 TGAAGTCGACCTTAGTCATTTGTC 58.772 41.667 13.01 0.00 43.73 3.18
712 713 5.010719 TGAAGTCGACCTTAGTCATTTGTCT 59.989 40.000 13.01 0.00 43.73 3.41
713 714 5.061920 AGTCGACCTTAGTCATTTGTCTC 57.938 43.478 13.01 0.00 43.73 3.36
714 715 4.523173 AGTCGACCTTAGTCATTTGTCTCA 59.477 41.667 13.01 0.00 43.73 3.27
715 716 5.186021 AGTCGACCTTAGTCATTTGTCTCAT 59.814 40.000 13.01 0.00 43.73 2.90
716 717 5.869888 GTCGACCTTAGTCATTTGTCTCATT 59.130 40.000 3.51 0.00 43.73 2.57
717 718 6.035112 GTCGACCTTAGTCATTTGTCTCATTC 59.965 42.308 3.51 0.00 43.73 2.67
718 719 5.869344 CGACCTTAGTCATTTGTCTCATTCA 59.131 40.000 0.00 0.00 43.73 2.57
719 720 6.536582 CGACCTTAGTCATTTGTCTCATTCAT 59.463 38.462 0.00 0.00 43.73 2.57
720 721 7.065085 CGACCTTAGTCATTTGTCTCATTCATT 59.935 37.037 0.00 0.00 43.73 2.57
721 722 9.383519 GACCTTAGTCATTTGTCTCATTCATTA 57.616 33.333 0.00 0.00 42.99 1.90
722 723 9.911788 ACCTTAGTCATTTGTCTCATTCATTAT 57.088 29.630 0.00 0.00 0.00 1.28
724 725 9.661187 CTTAGTCATTTGTCTCATTCATTATGC 57.339 33.333 0.00 0.00 34.06 3.14
725 726 7.634671 AGTCATTTGTCTCATTCATTATGCA 57.365 32.000 0.00 0.00 34.06 3.96
726 727 8.234136 AGTCATTTGTCTCATTCATTATGCAT 57.766 30.769 3.79 3.79 34.06 3.96
727 728 8.692710 AGTCATTTGTCTCATTCATTATGCATT 58.307 29.630 3.54 0.00 34.06 3.56
728 729 9.955208 GTCATTTGTCTCATTCATTATGCATTA 57.045 29.630 3.54 0.00 34.06 1.90
733 734 9.511272 TTGTCTCATTCATTATGCATTATAGCT 57.489 29.630 3.54 0.00 34.06 3.32
734 735 9.511272 TGTCTCATTCATTATGCATTATAGCTT 57.489 29.630 3.54 0.00 34.06 3.74
735 736 9.770503 GTCTCATTCATTATGCATTATAGCTTG 57.229 33.333 3.54 0.00 34.06 4.01
736 737 9.511272 TCTCATTCATTATGCATTATAGCTTGT 57.489 29.630 3.54 0.00 34.06 3.16
744 745 9.630098 ATTATGCATTATAGCTTGTACAAATGC 57.370 29.630 24.13 24.13 45.81 3.56
746 747 6.738352 GCATTATAGCTTGTACAAATGCAC 57.262 37.500 25.20 9.04 45.25 4.57
747 748 5.396362 GCATTATAGCTTGTACAAATGCACG 59.604 40.000 25.20 9.89 45.25 5.34
748 749 5.478233 TTATAGCTTGTACAAATGCACGG 57.522 39.130 18.72 3.96 0.00 4.94
749 750 0.881118 AGCTTGTACAAATGCACGGG 59.119 50.000 18.72 3.31 0.00 5.28
750 751 0.732538 GCTTGTACAAATGCACGGGC 60.733 55.000 0.34 0.34 41.68 6.13
751 752 0.454285 CTTGTACAAATGCACGGGCG 60.454 55.000 10.03 0.00 45.35 6.13
752 753 1.167155 TTGTACAAATGCACGGGCGT 61.167 50.000 4.58 0.00 45.35 5.68
757 758 3.884900 AATGCACGGGCGTTCTAC 58.115 55.556 12.34 0.00 46.01 2.59
785 786 7.807907 AGTTTTTATTATGTTTGAGGTGCTTCG 59.192 33.333 0.00 0.00 0.00 3.79
791 792 3.128349 TGTTTGAGGTGCTTCGTACTTC 58.872 45.455 0.00 0.00 0.00 3.01
797 798 3.093057 AGGTGCTTCGTACTTCTGAGAT 58.907 45.455 0.00 0.00 0.00 2.75
798 799 3.119316 AGGTGCTTCGTACTTCTGAGATG 60.119 47.826 0.00 0.00 0.00 2.90
799 800 3.182967 GTGCTTCGTACTTCTGAGATGG 58.817 50.000 0.29 0.00 0.00 3.51
805 807 6.092807 GCTTCGTACTTCTGAGATGGATTTTT 59.907 38.462 0.29 0.00 0.00 1.94
862 869 9.370126 CTAAAACAAATAGAAGAACACTTCACG 57.630 33.333 11.59 0.00 41.48 4.35
873 880 5.519722 AGAACACTTCACGGCAATAAAAAG 58.480 37.500 0.00 0.00 0.00 2.27
882 889 1.202143 GGCAATAAAAAGTCGGCGAGG 60.202 52.381 11.20 0.00 0.00 4.63
899 906 1.866925 GGCAAATCGCGCCTATACC 59.133 57.895 0.00 0.00 46.56 2.73
971 1007 4.342862 AGTCAATAGTCTTGTGTGCAGT 57.657 40.909 0.00 0.00 0.00 4.40
973 1009 2.807967 TCAATAGTCTTGTGTGCAGTGC 59.192 45.455 8.58 8.58 0.00 4.40
992 1028 1.714794 CATCGAGCAGTTTTCGGTCT 58.285 50.000 0.00 0.00 38.54 3.85
993 1029 1.391485 CATCGAGCAGTTTTCGGTCTG 59.609 52.381 0.00 0.00 38.54 3.51
995 1031 0.319555 CGAGCAGTTTTCGGTCTGGA 60.320 55.000 0.00 0.00 34.56 3.86
1042 1078 1.079057 GTCGCCTTGTTCCTCCTCC 60.079 63.158 0.00 0.00 0.00 4.30
1071 1107 4.271816 CTCGCGACCCCCTCATCG 62.272 72.222 3.71 0.00 41.32 3.84
1368 1407 1.067212 CTGCAGGTCCGTAGTCATACC 59.933 57.143 5.57 0.00 0.00 2.73
1451 1514 0.519961 GAACCCGTTTGATCCCAACG 59.480 55.000 16.59 16.59 30.88 4.10
1461 1524 5.064707 CGTTTGATCCCAACGTAATTCAGAT 59.935 40.000 15.70 0.00 30.88 2.90
1471 1534 5.803020 ACGTAATTCAGATTGCTTCTTCC 57.197 39.130 0.00 0.00 29.93 3.46
1553 1644 9.701098 AATTGTGAATGATAATGCATGGTTATC 57.299 29.630 0.00 5.77 38.46 1.75
1554 1645 8.467963 TTGTGAATGATAATGCATGGTTATCT 57.532 30.769 15.90 1.64 38.66 1.98
1555 1646 9.571816 TTGTGAATGATAATGCATGGTTATCTA 57.428 29.630 15.90 6.62 38.66 1.98
1663 1815 4.092091 CAGGTTGCTCACGAATCTTAGTTC 59.908 45.833 0.00 0.00 0.00 3.01
1672 1824 7.868415 GCTCACGAATCTTAGTTCCTGTTATAT 59.132 37.037 0.00 0.00 0.00 0.86
1686 1838 9.685828 GTTCCTGTTATATGTCTACATCTCTTC 57.314 37.037 0.00 0.00 37.76 2.87
1707 1859 2.675844 CCTTCGAATTCGCACCAATGTA 59.324 45.455 22.90 0.00 39.60 2.29
1713 1865 3.848272 ATTCGCACCAATGTAGGTTTG 57.152 42.857 0.00 0.00 40.77 2.93
1721 1873 5.337491 GCACCAATGTAGGTTTGATTCCATT 60.337 40.000 0.00 0.00 40.77 3.16
1809 1962 4.497300 CCAACCAAAACTATTGCCATCAG 58.503 43.478 0.00 0.00 0.00 2.90
1916 2097 5.071519 ACAAAGTGGATAGATCAGCAGCTAT 59.928 40.000 0.00 0.00 0.00 2.97
2080 2277 7.839680 AAAACAGAATTCAATCAACTAGGGT 57.160 32.000 8.44 0.00 0.00 4.34
2134 2331 1.415374 CAAGTGTGCTGCAATCAAGC 58.585 50.000 2.77 0.00 0.00 4.01
2143 2340 0.673333 TGCAATCAAGCGACCATCGT 60.673 50.000 0.00 0.00 42.81 3.73
2272 2469 3.531538 GGACACAAAGCGGATAGATCAA 58.468 45.455 0.00 0.00 0.00 2.57
2306 2503 7.845617 TGAGACGAAACGGAAAATATTTTTG 57.154 32.000 14.45 12.33 0.00 2.44
2307 2504 6.858993 TGAGACGAAACGGAAAATATTTTTGG 59.141 34.615 14.45 11.53 0.00 3.28
2311 2508 8.013236 ACGAAACGGAAAATATTTTTGGATTG 57.987 30.769 14.45 9.63 0.00 2.67
2463 2802 7.025963 CAGAATTCAATCAACAAGAACCTAGC 58.974 38.462 8.44 0.00 0.00 3.42
2481 2820 6.926313 ACCTAGCTTGTATCCGAGAATAATC 58.074 40.000 0.00 0.00 0.00 1.75
2482 2821 6.722129 ACCTAGCTTGTATCCGAGAATAATCT 59.278 38.462 0.00 0.00 39.10 2.40
2483 2822 7.889073 ACCTAGCTTGTATCCGAGAATAATCTA 59.111 37.037 0.00 0.00 35.54 1.98
2484 2823 8.402472 CCTAGCTTGTATCCGAGAATAATCTAG 58.598 40.741 0.00 0.00 35.54 2.43
2485 2824 7.768807 AGCTTGTATCCGAGAATAATCTAGT 57.231 36.000 0.00 0.00 35.54 2.57
2486 2825 8.184304 AGCTTGTATCCGAGAATAATCTAGTT 57.816 34.615 0.00 0.00 35.54 2.24
2771 3178 9.104965 CGTGGTAAAATTCAGAGGATTATTACA 57.895 33.333 0.00 0.00 0.00 2.41
3019 3610 9.337396 AGTGAGAAAACAGTTTAATATGTGTCA 57.663 29.630 0.00 0.00 0.00 3.58
3509 4395 6.644347 TCCTATCTCAAGTTTCCAGTCAATC 58.356 40.000 0.00 0.00 0.00 2.67
3893 4780 2.092968 TCCTATTGGAGCTGCGTTTCAT 60.093 45.455 0.00 0.00 37.46 2.57
3918 4805 1.610624 CGGTTGCCATTGAGTACCTGT 60.611 52.381 0.00 0.00 0.00 4.00
3919 4806 1.812571 GGTTGCCATTGAGTACCTGTG 59.187 52.381 0.00 0.00 0.00 3.66
3920 4807 2.504367 GTTGCCATTGAGTACCTGTGT 58.496 47.619 0.00 0.00 0.00 3.72
3921 4808 2.884639 GTTGCCATTGAGTACCTGTGTT 59.115 45.455 0.00 0.00 0.00 3.32
3922 4809 4.069304 GTTGCCATTGAGTACCTGTGTTA 58.931 43.478 0.00 0.00 0.00 2.41
3923 4810 3.937814 TGCCATTGAGTACCTGTGTTAG 58.062 45.455 0.00 0.00 0.00 2.34
3924 4811 3.580895 TGCCATTGAGTACCTGTGTTAGA 59.419 43.478 0.00 0.00 0.00 2.10
3925 4812 4.184629 GCCATTGAGTACCTGTGTTAGAG 58.815 47.826 0.00 0.00 0.00 2.43
3926 4813 4.081642 GCCATTGAGTACCTGTGTTAGAGA 60.082 45.833 0.00 0.00 0.00 3.10
3927 4814 5.568825 GCCATTGAGTACCTGTGTTAGAGAA 60.569 44.000 0.00 0.00 0.00 2.87
3928 4815 6.644347 CCATTGAGTACCTGTGTTAGAGAAT 58.356 40.000 0.00 0.00 0.00 2.40
3929 4816 6.758886 CCATTGAGTACCTGTGTTAGAGAATC 59.241 42.308 0.00 0.00 0.00 2.52
3930 4817 5.916661 TGAGTACCTGTGTTAGAGAATCC 57.083 43.478 0.00 0.00 33.66 3.01
3931 4818 5.580998 TGAGTACCTGTGTTAGAGAATCCT 58.419 41.667 0.00 0.00 33.66 3.24
3932 4819 6.728411 TGAGTACCTGTGTTAGAGAATCCTA 58.272 40.000 0.00 0.00 33.66 2.94
3933 4820 7.355101 TGAGTACCTGTGTTAGAGAATCCTAT 58.645 38.462 0.00 0.00 33.66 2.57
3934 4821 8.500238 TGAGTACCTGTGTTAGAGAATCCTATA 58.500 37.037 0.00 0.00 33.66 1.31
3935 4822 8.927675 AGTACCTGTGTTAGAGAATCCTATAG 57.072 38.462 0.00 0.00 33.66 1.31
3936 4823 8.725256 AGTACCTGTGTTAGAGAATCCTATAGA 58.275 37.037 0.00 0.00 33.66 1.98
3937 4824 9.523168 GTACCTGTGTTAGAGAATCCTATAGAT 57.477 37.037 0.00 0.00 36.48 1.98
3939 4826 8.865090 ACCTGTGTTAGAGAATCCTATAGATTG 58.135 37.037 0.00 0.00 45.52 2.67
3940 4827 8.865090 CCTGTGTTAGAGAATCCTATAGATTGT 58.135 37.037 0.00 0.00 45.52 2.71
3946 4833 7.931578 AGAGAATCCTATAGATTGTAGTCCG 57.068 40.000 0.00 0.00 45.52 4.79
3947 4834 7.463431 AGAGAATCCTATAGATTGTAGTCCGT 58.537 38.462 0.00 0.00 45.52 4.69
3948 4835 8.604184 AGAGAATCCTATAGATTGTAGTCCGTA 58.396 37.037 0.00 0.00 45.52 4.02
3949 4836 9.398538 GAGAATCCTATAGATTGTAGTCCGTAT 57.601 37.037 0.00 0.00 45.52 3.06
3950 4837 9.398538 AGAATCCTATAGATTGTAGTCCGTATC 57.601 37.037 0.00 0.00 45.52 2.24
3951 4838 9.175312 GAATCCTATAGATTGTAGTCCGTATCA 57.825 37.037 0.00 0.00 45.52 2.15
3952 4839 9.529823 AATCCTATAGATTGTAGTCCGTATCAA 57.470 33.333 0.00 0.00 43.81 2.57
3953 4840 8.929260 TCCTATAGATTGTAGTCCGTATCAAA 57.071 34.615 0.00 0.00 0.00 2.69
3954 4841 9.529823 TCCTATAGATTGTAGTCCGTATCAAAT 57.470 33.333 0.00 0.00 0.00 2.32
3961 4848 9.477484 GATTGTAGTCCGTATCAAATACAATCT 57.523 33.333 19.98 0.57 46.80 2.40
3962 4849 8.642908 TTGTAGTCCGTATCAAATACAATCTG 57.357 34.615 0.00 0.00 35.48 2.90
3963 4850 7.778083 TGTAGTCCGTATCAAATACAATCTGT 58.222 34.615 0.00 0.00 35.48 3.41
3964 4851 8.905850 TGTAGTCCGTATCAAATACAATCTGTA 58.094 33.333 0.00 0.00 37.24 2.74
3965 4852 9.395707 GTAGTCCGTATCAAATACAATCTGTAG 57.604 37.037 0.00 0.00 36.14 2.74
3966 4853 7.434492 AGTCCGTATCAAATACAATCTGTAGG 58.566 38.462 0.00 0.00 36.14 3.18
3967 4854 7.069578 AGTCCGTATCAAATACAATCTGTAGGT 59.930 37.037 0.00 0.00 36.14 3.08
3968 4855 7.709613 GTCCGTATCAAATACAATCTGTAGGTT 59.290 37.037 0.00 0.00 36.14 3.50
3969 4856 8.916062 TCCGTATCAAATACAATCTGTAGGTTA 58.084 33.333 0.00 0.00 36.14 2.85
3970 4857 9.193133 CCGTATCAAATACAATCTGTAGGTTAG 57.807 37.037 0.00 0.00 36.14 2.34
3971 4858 9.961265 CGTATCAAATACAATCTGTAGGTTAGA 57.039 33.333 0.00 0.00 36.14 2.10
3979 4866 9.823647 ATACAATCTGTAGGTTAGATCAACTTG 57.176 33.333 0.00 0.28 36.14 3.16
3980 4867 7.680730 ACAATCTGTAGGTTAGATCAACTTGT 58.319 34.615 0.00 0.82 37.30 3.16
3981 4868 8.812972 ACAATCTGTAGGTTAGATCAACTTGTA 58.187 33.333 0.00 0.00 37.30 2.41
3982 4869 9.088512 CAATCTGTAGGTTAGATCAACTTGTAC 57.911 37.037 0.00 0.00 37.30 2.90
3983 4870 8.596781 ATCTGTAGGTTAGATCAACTTGTACT 57.403 34.615 0.00 0.00 37.30 2.73
3984 4871 8.053026 TCTGTAGGTTAGATCAACTTGTACTC 57.947 38.462 0.00 0.00 37.30 2.59
3985 4872 7.122353 TCTGTAGGTTAGATCAACTTGTACTCC 59.878 40.741 0.00 0.00 37.30 3.85
3986 4873 6.722590 TGTAGGTTAGATCAACTTGTACTCCA 59.277 38.462 0.00 0.00 37.30 3.86
3987 4874 6.038997 AGGTTAGATCAACTTGTACTCCAC 57.961 41.667 0.00 0.00 37.30 4.02
3988 4875 4.863131 GGTTAGATCAACTTGTACTCCACG 59.137 45.833 0.00 0.00 37.30 4.94
3989 4876 5.467705 GTTAGATCAACTTGTACTCCACGT 58.532 41.667 0.00 0.00 34.06 4.49
3990 4877 4.602340 AGATCAACTTGTACTCCACGTT 57.398 40.909 0.00 0.00 36.07 3.99
3991 4878 4.957296 AGATCAACTTGTACTCCACGTTT 58.043 39.130 0.00 0.00 33.62 3.60
3992 4879 4.750098 AGATCAACTTGTACTCCACGTTTG 59.250 41.667 0.00 0.00 33.62 2.93
3993 4880 3.864243 TCAACTTGTACTCCACGTTTGT 58.136 40.909 0.00 0.00 33.62 2.83
3994 4881 5.008619 TCAACTTGTACTCCACGTTTGTA 57.991 39.130 0.00 0.00 33.62 2.41
3995 4882 5.417811 TCAACTTGTACTCCACGTTTGTAA 58.582 37.500 0.00 0.00 33.62 2.41
3996 4883 6.050432 TCAACTTGTACTCCACGTTTGTAAT 58.950 36.000 0.00 0.00 33.62 1.89
3997 4884 5.917541 ACTTGTACTCCACGTTTGTAATG 57.082 39.130 0.00 0.00 0.00 1.90
3998 4885 5.362263 ACTTGTACTCCACGTTTGTAATGT 58.638 37.500 0.00 0.00 0.00 2.71
3999 4886 5.464389 ACTTGTACTCCACGTTTGTAATGTC 59.536 40.000 0.00 0.00 0.00 3.06
4000 4887 4.309099 TGTACTCCACGTTTGTAATGTCC 58.691 43.478 0.00 0.00 0.00 4.02
4001 4888 3.764237 ACTCCACGTTTGTAATGTCCT 57.236 42.857 0.00 0.00 0.00 3.85
4002 4889 4.081322 ACTCCACGTTTGTAATGTCCTT 57.919 40.909 0.00 0.00 0.00 3.36
4003 4890 3.813166 ACTCCACGTTTGTAATGTCCTTG 59.187 43.478 0.00 0.00 0.00 3.61
4004 4891 2.550606 TCCACGTTTGTAATGTCCTTGC 59.449 45.455 0.00 0.00 0.00 4.01
4005 4892 2.552315 CCACGTTTGTAATGTCCTTGCT 59.448 45.455 0.00 0.00 0.00 3.91
4006 4893 3.554524 CACGTTTGTAATGTCCTTGCTG 58.445 45.455 0.00 0.00 0.00 4.41
4007 4894 3.003275 CACGTTTGTAATGTCCTTGCTGT 59.997 43.478 0.00 0.00 0.00 4.40
4008 4895 3.003275 ACGTTTGTAATGTCCTTGCTGTG 59.997 43.478 0.00 0.00 0.00 3.66
4009 4896 3.003275 CGTTTGTAATGTCCTTGCTGTGT 59.997 43.478 0.00 0.00 0.00 3.72
4010 4897 4.212425 CGTTTGTAATGTCCTTGCTGTGTA 59.788 41.667 0.00 0.00 0.00 2.90
4011 4898 5.106712 CGTTTGTAATGTCCTTGCTGTGTAT 60.107 40.000 0.00 0.00 0.00 2.29
4012 4899 6.091577 CGTTTGTAATGTCCTTGCTGTGTATA 59.908 38.462 0.00 0.00 0.00 1.47
4013 4900 7.201609 CGTTTGTAATGTCCTTGCTGTGTATAT 60.202 37.037 0.00 0.00 0.00 0.86
4014 4901 9.104965 GTTTGTAATGTCCTTGCTGTGTATATA 57.895 33.333 0.00 0.00 0.00 0.86
4015 4902 9.845740 TTTGTAATGTCCTTGCTGTGTATATAT 57.154 29.630 0.00 0.00 0.00 0.86
4044 4931 3.485947 TGCAATGTAAACGATTGAGGC 57.514 42.857 0.00 0.00 33.36 4.70
4045 4932 2.159585 TGCAATGTAAACGATTGAGGCG 60.160 45.455 0.00 0.00 33.36 5.52
4046 4933 2.095213 GCAATGTAAACGATTGAGGCGA 59.905 45.455 0.00 0.00 33.36 5.54
4047 4934 3.785505 GCAATGTAAACGATTGAGGCGAG 60.786 47.826 0.00 0.00 33.36 5.03
4048 4935 1.355971 TGTAAACGATTGAGGCGAGC 58.644 50.000 0.00 0.00 0.00 5.03
4049 4936 1.337354 TGTAAACGATTGAGGCGAGCA 60.337 47.619 0.00 0.00 0.00 4.26
4050 4937 1.730064 GTAAACGATTGAGGCGAGCAA 59.270 47.619 0.00 0.00 0.00 3.91
4051 4938 1.453155 AAACGATTGAGGCGAGCAAT 58.547 45.000 0.00 3.55 38.58 3.56
4052 4939 1.453155 AACGATTGAGGCGAGCAATT 58.547 45.000 0.00 0.00 36.19 2.32
4053 4940 0.729116 ACGATTGAGGCGAGCAATTG 59.271 50.000 0.00 0.00 41.04 2.32
4054 4941 0.590732 CGATTGAGGCGAGCAATTGC 60.591 55.000 23.05 23.05 36.19 3.56
4055 4942 0.452987 GATTGAGGCGAGCAATTGCA 59.547 50.000 30.89 9.21 45.16 4.08
4056 4943 0.454600 ATTGAGGCGAGCAATTGCAG 59.545 50.000 30.89 23.86 45.16 4.41
4057 4944 2.101770 GAGGCGAGCAATTGCAGC 59.898 61.111 30.46 30.46 45.16 5.25
4060 4947 4.842091 GCGAGCAATTGCAGCCCG 62.842 66.667 30.89 25.41 45.16 6.13
4061 4948 3.126879 CGAGCAATTGCAGCCCGA 61.127 61.111 30.89 0.00 45.16 5.14
4062 4949 2.475466 CGAGCAATTGCAGCCCGAT 61.475 57.895 30.89 9.54 45.16 4.18
4063 4950 1.358046 GAGCAATTGCAGCCCGATC 59.642 57.895 30.89 14.68 45.16 3.69
4064 4951 1.077212 AGCAATTGCAGCCCGATCT 60.077 52.632 30.89 5.18 45.16 2.75
4065 4952 0.682209 AGCAATTGCAGCCCGATCTT 60.682 50.000 30.89 4.40 45.16 2.40
4066 4953 0.526954 GCAATTGCAGCCCGATCTTG 60.527 55.000 25.36 0.00 41.59 3.02
4067 4954 0.813184 CAATTGCAGCCCGATCTTGT 59.187 50.000 0.00 0.00 0.00 3.16
4068 4955 1.203052 CAATTGCAGCCCGATCTTGTT 59.797 47.619 0.00 0.00 0.00 2.83
4069 4956 1.549203 ATTGCAGCCCGATCTTGTTT 58.451 45.000 0.00 0.00 0.00 2.83
4070 4957 1.327303 TTGCAGCCCGATCTTGTTTT 58.673 45.000 0.00 0.00 0.00 2.43
4071 4958 0.881118 TGCAGCCCGATCTTGTTTTC 59.119 50.000 0.00 0.00 0.00 2.29
4072 4959 0.171231 GCAGCCCGATCTTGTTTTCC 59.829 55.000 0.00 0.00 0.00 3.13
4073 4960 1.826385 CAGCCCGATCTTGTTTTCCT 58.174 50.000 0.00 0.00 0.00 3.36
4074 4961 2.939640 GCAGCCCGATCTTGTTTTCCTA 60.940 50.000 0.00 0.00 0.00 2.94
4075 4962 2.678336 CAGCCCGATCTTGTTTTCCTAC 59.322 50.000 0.00 0.00 0.00 3.18
4076 4963 2.014857 GCCCGATCTTGTTTTCCTACC 58.985 52.381 0.00 0.00 0.00 3.18
4077 4964 2.355818 GCCCGATCTTGTTTTCCTACCT 60.356 50.000 0.00 0.00 0.00 3.08
4078 4965 3.118519 GCCCGATCTTGTTTTCCTACCTA 60.119 47.826 0.00 0.00 0.00 3.08
4079 4966 4.624604 GCCCGATCTTGTTTTCCTACCTAA 60.625 45.833 0.00 0.00 0.00 2.69
4080 4967 5.681639 CCCGATCTTGTTTTCCTACCTAAT 58.318 41.667 0.00 0.00 0.00 1.73
4081 4968 5.758784 CCCGATCTTGTTTTCCTACCTAATC 59.241 44.000 0.00 0.00 0.00 1.75
4082 4969 6.408206 CCCGATCTTGTTTTCCTACCTAATCT 60.408 42.308 0.00 0.00 0.00 2.40
4083 4970 7.201974 CCCGATCTTGTTTTCCTACCTAATCTA 60.202 40.741 0.00 0.00 0.00 1.98
4084 4971 8.202137 CCGATCTTGTTTTCCTACCTAATCTAA 58.798 37.037 0.00 0.00 0.00 2.10
4085 4972 9.765795 CGATCTTGTTTTCCTACCTAATCTAAT 57.234 33.333 0.00 0.00 0.00 1.73
4152 5039 8.957466 TCACATATCTAAATCTAGTACCATCCG 58.043 37.037 0.00 0.00 0.00 4.18
4164 5051 2.175878 ACCATCCGATCTATTGCTGC 57.824 50.000 0.00 0.00 0.00 5.25
4165 5052 1.696336 ACCATCCGATCTATTGCTGCT 59.304 47.619 0.00 0.00 0.00 4.24
4166 5053 2.105477 ACCATCCGATCTATTGCTGCTT 59.895 45.455 0.00 0.00 0.00 3.91
4167 5054 2.483106 CCATCCGATCTATTGCTGCTTG 59.517 50.000 0.00 0.00 0.00 4.01
4168 5055 2.988010 TCCGATCTATTGCTGCTTGT 57.012 45.000 0.00 0.00 0.00 3.16
4169 5056 3.266510 TCCGATCTATTGCTGCTTGTT 57.733 42.857 0.00 0.00 0.00 2.83
4198 5086 2.578495 CAAGCTTGATTTGTGTCGCTC 58.422 47.619 22.31 0.00 0.00 5.03
4206 5094 0.730265 TTTGTGTCGCTCGTTGCTTT 59.270 45.000 2.29 0.00 40.11 3.51
4209 5097 1.959226 TGTCGCTCGTTGCTTTCCC 60.959 57.895 2.29 0.00 40.11 3.97
4219 5107 0.321298 TTGCTTTCCCTGTCGTAGCC 60.321 55.000 0.00 0.00 0.00 3.93
4223 5111 0.037975 TTTCCCTGTCGTAGCCGTTC 60.038 55.000 0.00 0.00 35.01 3.95
4232 5120 2.407696 GTCGTAGCCGTTCTGTTTTCTC 59.592 50.000 0.00 0.00 35.01 2.87
4240 5128 0.320421 TTCTGTTTTCTCCGGCCTCG 60.320 55.000 0.00 0.00 0.00 4.63
4250 5138 2.125713 CGGCCTCGTATGTGTGCA 60.126 61.111 0.00 0.00 0.00 4.57
4253 5141 1.448540 GCCTCGTATGTGTGCAGCT 60.449 57.895 0.00 0.00 0.00 4.24
4255 5143 1.442769 CCTCGTATGTGTGCAGCTTT 58.557 50.000 0.00 0.00 0.00 3.51
4293 5182 0.880278 CCGTTGTCCCTGTGTCTGTG 60.880 60.000 0.00 0.00 0.00 3.66
4399 5298 5.592282 TCGCTTCATCTCTATCTTCTCACTT 59.408 40.000 0.00 0.00 0.00 3.16
4401 5300 6.459435 CGCTTCATCTCTATCTTCTCACTTCA 60.459 42.308 0.00 0.00 0.00 3.02
4408 5307 8.261492 TCTCTATCTTCTCACTTCAATTTTGC 57.739 34.615 0.00 0.00 0.00 3.68
4433 5332 2.299582 CTCATTGATTTGGTGTTGGCCA 59.700 45.455 0.00 0.00 36.62 5.36
4455 5354 3.117851 AGCTCTACCCATAAAAGAAGGGC 60.118 47.826 0.00 0.00 46.88 5.19
4609 5508 6.537453 ACTTGCTAAGTCACATCTAGATGT 57.463 37.500 28.95 28.95 42.57 3.06
4641 5540 5.863965 TCATGTCTACATTTCTCACCACAA 58.136 37.500 0.00 0.00 33.61 3.33
4683 5582 8.843885 TTTCATGCAAAATTTATGATTGTCCA 57.156 26.923 3.55 0.00 31.54 4.02
4688 5587 5.638657 GCAAAATTTATGATTGTCCACTGCA 59.361 36.000 0.00 0.00 0.00 4.41
4692 5591 2.760634 ATGATTGTCCACTGCACGTA 57.239 45.000 0.00 0.00 0.00 3.57
4714 5613 7.066043 ACGTAACTTCCTTTTGATGTTTGTGTA 59.934 33.333 0.00 0.00 40.62 2.90
4715 5614 7.911205 CGTAACTTCCTTTTGATGTTTGTGTAA 59.089 33.333 0.00 0.00 40.62 2.41
4731 5630 0.882927 GTAAGCGTGTGGCCTGTTGA 60.883 55.000 3.32 0.00 45.17 3.18
4770 5670 3.131400 TGTGGGGTAGTCTTTTTGTTTGC 59.869 43.478 0.00 0.00 0.00 3.68
4771 5671 3.131400 GTGGGGTAGTCTTTTTGTTTGCA 59.869 43.478 0.00 0.00 0.00 4.08
4784 5684 2.855770 TTTGCACCTGGGCCTGGAT 61.856 57.895 33.41 16.17 0.00 3.41
4787 5687 2.765969 CACCTGGGCCTGGATTGT 59.234 61.111 33.41 10.42 0.00 2.71
4803 5708 3.763897 GGATTGTGCTGGTCCTTTATGTT 59.236 43.478 0.00 0.00 0.00 2.71
4813 5718 3.187842 GGTCCTTTATGTTTGTGTCCGTC 59.812 47.826 0.00 0.00 0.00 4.79
4893 5798 4.684484 TCGCCACTCTCTATACTCACTA 57.316 45.455 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.252962 CCAAACCTGAATTAAATCATGCTATTC 57.747 33.333 0.00 0.00 0.00 1.75
7 8 8.980596 TCCAAACCTGAATTAAATCATGCTATT 58.019 29.630 0.00 0.00 0.00 1.73
8 9 8.537728 TCCAAACCTGAATTAAATCATGCTAT 57.462 30.769 0.00 0.00 0.00 2.97
9 10 7.833682 TCTCCAAACCTGAATTAAATCATGCTA 59.166 33.333 0.00 0.00 0.00 3.49
10 11 6.664816 TCTCCAAACCTGAATTAAATCATGCT 59.335 34.615 0.00 0.00 0.00 3.79
11 12 6.866480 TCTCCAAACCTGAATTAAATCATGC 58.134 36.000 0.00 0.00 0.00 4.06
12 13 9.880157 AATTCTCCAAACCTGAATTAAATCATG 57.120 29.630 0.00 0.00 38.26 3.07
57 58 6.855836 ACACAGTATGGCATTTTAGACAATG 58.144 36.000 4.78 0.00 43.62 2.82
58 59 7.829211 ACTACACAGTATGGCATTTTAGACAAT 59.171 33.333 4.78 0.00 43.62 2.71
59 60 7.165485 ACTACACAGTATGGCATTTTAGACAA 58.835 34.615 4.78 0.00 43.62 3.18
60 61 6.707290 ACTACACAGTATGGCATTTTAGACA 58.293 36.000 4.78 0.00 43.62 3.41
61 62 7.464178 CGAACTACACAGTATGGCATTTTAGAC 60.464 40.741 4.78 0.00 43.62 2.59
62 63 6.533723 CGAACTACACAGTATGGCATTTTAGA 59.466 38.462 4.78 0.00 43.62 2.10
63 64 6.533723 TCGAACTACACAGTATGGCATTTTAG 59.466 38.462 4.78 0.00 43.62 1.85
64 65 6.311935 GTCGAACTACACAGTATGGCATTTTA 59.688 38.462 4.78 0.00 43.62 1.52
65 66 5.121768 GTCGAACTACACAGTATGGCATTTT 59.878 40.000 4.78 0.00 43.62 1.82
66 67 4.630069 GTCGAACTACACAGTATGGCATTT 59.370 41.667 4.78 0.00 43.62 2.32
67 68 4.181578 GTCGAACTACACAGTATGGCATT 58.818 43.478 4.78 0.00 43.62 3.56
68 69 3.194755 TGTCGAACTACACAGTATGGCAT 59.805 43.478 4.88 4.88 43.62 4.40
69 70 2.559231 TGTCGAACTACACAGTATGGCA 59.441 45.455 0.00 0.00 43.62 4.92
70 71 3.119602 TCTGTCGAACTACACAGTATGGC 60.120 47.826 0.00 0.00 43.62 4.40
71 72 4.696899 TCTGTCGAACTACACAGTATGG 57.303 45.455 0.00 0.00 43.62 2.74
72 73 5.994235 GTTCTGTCGAACTACACAGTATG 57.006 43.478 0.00 0.00 44.80 2.39
84 85 0.666374 TGTCGCTCTGTTCTGTCGAA 59.334 50.000 0.00 0.00 0.00 3.71
85 86 0.666374 TTGTCGCTCTGTTCTGTCGA 59.334 50.000 0.00 0.00 0.00 4.20
86 87 1.487482 TTTGTCGCTCTGTTCTGTCG 58.513 50.000 0.00 0.00 0.00 4.35
87 88 2.607635 TGTTTTGTCGCTCTGTTCTGTC 59.392 45.455 0.00 0.00 0.00 3.51
88 89 2.627945 TGTTTTGTCGCTCTGTTCTGT 58.372 42.857 0.00 0.00 0.00 3.41
89 90 3.885484 ATGTTTTGTCGCTCTGTTCTG 57.115 42.857 0.00 0.00 0.00 3.02
90 91 4.632153 ACTATGTTTTGTCGCTCTGTTCT 58.368 39.130 0.00 0.00 0.00 3.01
91 92 4.992381 ACTATGTTTTGTCGCTCTGTTC 57.008 40.909 0.00 0.00 0.00 3.18
92 93 4.213482 GGAACTATGTTTTGTCGCTCTGTT 59.787 41.667 0.00 0.00 0.00 3.16
93 94 3.746492 GGAACTATGTTTTGTCGCTCTGT 59.254 43.478 0.00 0.00 0.00 3.41
94 95 3.181530 CGGAACTATGTTTTGTCGCTCTG 60.182 47.826 0.00 0.00 0.00 3.35
95 96 2.993899 CGGAACTATGTTTTGTCGCTCT 59.006 45.455 0.00 0.00 0.00 4.09
96 97 2.735134 ACGGAACTATGTTTTGTCGCTC 59.265 45.455 0.00 0.00 0.00 5.03
97 98 2.762745 ACGGAACTATGTTTTGTCGCT 58.237 42.857 0.00 0.00 0.00 4.93
98 99 4.151157 ACTTACGGAACTATGTTTTGTCGC 59.849 41.667 0.00 0.00 0.00 5.19
99 100 5.834239 ACTTACGGAACTATGTTTTGTCG 57.166 39.130 0.00 0.00 0.00 4.35
130 131 9.412460 AGGATGACATGTACATCAAATAACATT 57.588 29.630 25.87 8.57 43.84 2.71
131 132 8.985315 AGGATGACATGTACATCAAATAACAT 57.015 30.769 25.87 12.04 43.84 2.71
132 133 8.806429 AAGGATGACATGTACATCAAATAACA 57.194 30.769 25.87 8.58 43.84 2.41
134 135 9.056005 GCTAAGGATGACATGTACATCAAATAA 57.944 33.333 25.87 13.55 43.84 1.40
135 136 8.432013 AGCTAAGGATGACATGTACATCAAATA 58.568 33.333 25.87 18.20 43.84 1.40
136 137 7.285566 AGCTAAGGATGACATGTACATCAAAT 58.714 34.615 25.87 18.11 43.84 2.32
137 138 6.653020 AGCTAAGGATGACATGTACATCAAA 58.347 36.000 25.87 15.94 43.84 2.69
138 139 6.098838 AGAGCTAAGGATGACATGTACATCAA 59.901 38.462 25.87 16.16 43.84 2.57
139 140 5.600069 AGAGCTAAGGATGACATGTACATCA 59.400 40.000 25.87 3.20 43.84 3.07
140 141 6.095432 AGAGCTAAGGATGACATGTACATC 57.905 41.667 20.83 20.83 42.07 3.06
141 142 5.011533 GGAGAGCTAAGGATGACATGTACAT 59.988 44.000 1.41 1.41 0.00 2.29
142 143 4.342378 GGAGAGCTAAGGATGACATGTACA 59.658 45.833 0.00 0.00 0.00 2.90
143 144 4.342378 TGGAGAGCTAAGGATGACATGTAC 59.658 45.833 0.00 0.00 0.00 2.90
144 145 4.342378 GTGGAGAGCTAAGGATGACATGTA 59.658 45.833 0.00 0.00 0.00 2.29
145 146 3.133721 GTGGAGAGCTAAGGATGACATGT 59.866 47.826 0.00 0.00 0.00 3.21
146 147 3.726607 GTGGAGAGCTAAGGATGACATG 58.273 50.000 0.00 0.00 0.00 3.21
147 148 2.363680 CGTGGAGAGCTAAGGATGACAT 59.636 50.000 0.00 0.00 0.00 3.06
148 149 1.751351 CGTGGAGAGCTAAGGATGACA 59.249 52.381 0.00 0.00 0.00 3.58
149 150 1.067821 CCGTGGAGAGCTAAGGATGAC 59.932 57.143 0.00 0.00 0.00 3.06
150 151 1.342076 ACCGTGGAGAGCTAAGGATGA 60.342 52.381 0.00 0.00 0.00 2.92
151 152 1.115467 ACCGTGGAGAGCTAAGGATG 58.885 55.000 0.00 0.00 0.00 3.51
152 153 1.867363 AACCGTGGAGAGCTAAGGAT 58.133 50.000 0.00 0.00 0.00 3.24
153 154 1.275291 CAAACCGTGGAGAGCTAAGGA 59.725 52.381 0.00 0.00 0.00 3.36
154 155 1.726853 CAAACCGTGGAGAGCTAAGG 58.273 55.000 0.00 0.00 0.00 2.69
155 156 1.079503 GCAAACCGTGGAGAGCTAAG 58.920 55.000 0.00 0.00 0.00 2.18
156 157 0.685097 AGCAAACCGTGGAGAGCTAA 59.315 50.000 0.00 0.00 0.00 3.09
157 158 0.685097 AAGCAAACCGTGGAGAGCTA 59.315 50.000 0.00 0.00 0.00 3.32
158 159 0.179018 AAAGCAAACCGTGGAGAGCT 60.179 50.000 0.00 0.00 0.00 4.09
159 160 0.040067 CAAAGCAAACCGTGGAGAGC 60.040 55.000 0.00 0.00 0.00 4.09
160 161 1.308998 ACAAAGCAAACCGTGGAGAG 58.691 50.000 0.00 0.00 0.00 3.20
161 162 1.403679 CAACAAAGCAAACCGTGGAGA 59.596 47.619 0.00 0.00 0.00 3.71
162 163 1.403679 TCAACAAAGCAAACCGTGGAG 59.596 47.619 0.00 0.00 0.00 3.86
163 164 1.133407 GTCAACAAAGCAAACCGTGGA 59.867 47.619 0.00 0.00 0.00 4.02
164 165 1.555477 GTCAACAAAGCAAACCGTGG 58.445 50.000 0.00 0.00 0.00 4.94
165 166 1.134175 AGGTCAACAAAGCAAACCGTG 59.866 47.619 0.00 0.00 35.12 4.94
166 167 1.134175 CAGGTCAACAAAGCAAACCGT 59.866 47.619 0.00 0.00 35.12 4.83
167 168 1.134175 ACAGGTCAACAAAGCAAACCG 59.866 47.619 0.00 0.00 35.12 4.44
168 169 2.481276 GGACAGGTCAACAAAGCAAACC 60.481 50.000 1.41 0.00 0.00 3.27
169 170 2.481276 GGGACAGGTCAACAAAGCAAAC 60.481 50.000 1.41 0.00 0.00 2.93
170 171 1.754226 GGGACAGGTCAACAAAGCAAA 59.246 47.619 1.41 0.00 0.00 3.68
171 172 1.398692 GGGACAGGTCAACAAAGCAA 58.601 50.000 1.41 0.00 0.00 3.91
172 173 0.467290 GGGGACAGGTCAACAAAGCA 60.467 55.000 1.41 0.00 0.00 3.91
173 174 0.467290 TGGGGACAGGTCAACAAAGC 60.467 55.000 1.41 0.00 35.01 3.51
174 175 3.819245 TGGGGACAGGTCAACAAAG 57.181 52.632 1.41 0.00 35.01 2.77
190 191 1.553690 AAGACAGACCCGACCCATGG 61.554 60.000 4.14 4.14 0.00 3.66
191 192 0.108138 GAAGACAGACCCGACCCATG 60.108 60.000 0.00 0.00 0.00 3.66
192 193 0.252284 AGAAGACAGACCCGACCCAT 60.252 55.000 0.00 0.00 0.00 4.00
193 194 0.471211 AAGAAGACAGACCCGACCCA 60.471 55.000 0.00 0.00 0.00 4.51
194 195 0.037232 CAAGAAGACAGACCCGACCC 60.037 60.000 0.00 0.00 0.00 4.46
195 196 0.037232 CCAAGAAGACAGACCCGACC 60.037 60.000 0.00 0.00 0.00 4.79
196 197 0.670854 GCCAAGAAGACAGACCCGAC 60.671 60.000 0.00 0.00 0.00 4.79
197 198 0.832135 AGCCAAGAAGACAGACCCGA 60.832 55.000 0.00 0.00 0.00 5.14
198 199 0.035458 AAGCCAAGAAGACAGACCCG 59.965 55.000 0.00 0.00 0.00 5.28
199 200 1.202818 ACAAGCCAAGAAGACAGACCC 60.203 52.381 0.00 0.00 0.00 4.46
200 201 1.876156 CACAAGCCAAGAAGACAGACC 59.124 52.381 0.00 0.00 0.00 3.85
604 605 2.230266 GTCTGGACAGTCTGAACTCCTC 59.770 54.545 6.91 0.00 31.71 3.71
605 606 2.243810 GTCTGGACAGTCTGAACTCCT 58.756 52.381 6.91 0.00 31.71 3.69
606 607 1.068194 CGTCTGGACAGTCTGAACTCC 60.068 57.143 6.91 3.89 31.71 3.85
607 608 1.068194 CCGTCTGGACAGTCTGAACTC 60.068 57.143 6.91 0.00 37.49 3.01
608 609 0.962489 CCGTCTGGACAGTCTGAACT 59.038 55.000 6.91 0.00 37.49 3.01
609 610 0.674534 ACCGTCTGGACAGTCTGAAC 59.325 55.000 6.91 0.00 39.21 3.18
610 611 1.068588 CAACCGTCTGGACAGTCTGAA 59.931 52.381 6.91 0.00 39.21 3.02
611 612 0.673985 CAACCGTCTGGACAGTCTGA 59.326 55.000 6.91 0.00 39.21 3.27
612 613 0.673985 TCAACCGTCTGGACAGTCTG 59.326 55.000 0.00 0.00 39.21 3.51
613 614 1.410004 TTCAACCGTCTGGACAGTCT 58.590 50.000 0.00 0.00 39.21 3.24
614 615 2.457366 ATTCAACCGTCTGGACAGTC 57.543 50.000 0.00 0.00 39.21 3.51
615 616 2.930826 AATTCAACCGTCTGGACAGT 57.069 45.000 0.00 0.00 39.21 3.55
616 617 3.563808 TCAAAATTCAACCGTCTGGACAG 59.436 43.478 1.63 0.00 39.21 3.51
617 618 3.546724 TCAAAATTCAACCGTCTGGACA 58.453 40.909 1.63 0.00 39.21 4.02
618 619 3.058224 CCTCAAAATTCAACCGTCTGGAC 60.058 47.826 0.00 0.00 39.21 4.02
619 620 3.146066 CCTCAAAATTCAACCGTCTGGA 58.854 45.455 0.00 0.00 39.21 3.86
620 621 3.146066 TCCTCAAAATTCAACCGTCTGG 58.854 45.455 0.00 0.00 42.84 3.86
621 622 3.815401 ACTCCTCAAAATTCAACCGTCTG 59.185 43.478 0.00 0.00 0.00 3.51
622 623 3.815401 CACTCCTCAAAATTCAACCGTCT 59.185 43.478 0.00 0.00 0.00 4.18
623 624 3.564225 ACACTCCTCAAAATTCAACCGTC 59.436 43.478 0.00 0.00 0.00 4.79
624 625 3.551846 ACACTCCTCAAAATTCAACCGT 58.448 40.909 0.00 0.00 0.00 4.83
625 626 4.513692 TGTACACTCCTCAAAATTCAACCG 59.486 41.667 0.00 0.00 0.00 4.44
626 627 6.385649 TTGTACACTCCTCAAAATTCAACC 57.614 37.500 0.00 0.00 0.00 3.77
627 628 9.394477 GTATTTGTACACTCCTCAAAATTCAAC 57.606 33.333 0.00 0.00 35.28 3.18
628 629 9.126151 TGTATTTGTACACTCCTCAAAATTCAA 57.874 29.630 0.00 0.00 35.28 2.69
629 630 8.564574 GTGTATTTGTACACTCCTCAAAATTCA 58.435 33.333 10.57 0.00 44.99 2.57
630 631 8.021396 GGTGTATTTGTACACTCCTCAAAATTC 58.979 37.037 15.75 0.00 46.92 2.17
631 632 7.039993 GGGTGTATTTGTACACTCCTCAAAATT 60.040 37.037 15.75 0.00 46.92 1.82
632 633 6.433093 GGGTGTATTTGTACACTCCTCAAAAT 59.567 38.462 15.75 0.00 46.92 1.82
633 634 5.766174 GGGTGTATTTGTACACTCCTCAAAA 59.234 40.000 15.75 0.00 46.92 2.44
634 635 5.310451 GGGTGTATTTGTACACTCCTCAAA 58.690 41.667 15.75 0.00 46.92 2.69
635 636 4.901868 GGGTGTATTTGTACACTCCTCAA 58.098 43.478 15.75 0.00 46.92 3.02
636 637 4.546829 GGGTGTATTTGTACACTCCTCA 57.453 45.455 15.75 0.00 46.92 3.86
641 642 5.194432 TGTGTTTGGGTGTATTTGTACACT 58.806 37.500 15.75 0.00 46.92 3.55
643 644 5.828328 TCATGTGTTTGGGTGTATTTGTACA 59.172 36.000 0.00 0.00 0.00 2.90
644 645 6.205853 TCTCATGTGTTTGGGTGTATTTGTAC 59.794 38.462 0.00 0.00 0.00 2.90
645 646 6.299922 TCTCATGTGTTTGGGTGTATTTGTA 58.700 36.000 0.00 0.00 0.00 2.41
646 647 5.136828 TCTCATGTGTTTGGGTGTATTTGT 58.863 37.500 0.00 0.00 0.00 2.83
647 648 5.473162 TCTCTCATGTGTTTGGGTGTATTTG 59.527 40.000 0.00 0.00 0.00 2.32
648 649 5.630121 TCTCTCATGTGTTTGGGTGTATTT 58.370 37.500 0.00 0.00 0.00 1.40
649 650 5.013079 TCTCTCTCATGTGTTTGGGTGTATT 59.987 40.000 0.00 0.00 0.00 1.89
650 651 4.532126 TCTCTCTCATGTGTTTGGGTGTAT 59.468 41.667 0.00 0.00 0.00 2.29
651 652 3.901222 TCTCTCTCATGTGTTTGGGTGTA 59.099 43.478 0.00 0.00 0.00 2.90
652 653 2.705658 TCTCTCTCATGTGTTTGGGTGT 59.294 45.455 0.00 0.00 0.00 4.16
653 654 3.407424 TCTCTCTCATGTGTTTGGGTG 57.593 47.619 0.00 0.00 0.00 4.61
654 655 4.437682 TTTCTCTCTCATGTGTTTGGGT 57.562 40.909 0.00 0.00 0.00 4.51
655 656 7.175641 AGTTTATTTCTCTCTCATGTGTTTGGG 59.824 37.037 0.00 0.00 0.00 4.12
656 657 8.103948 AGTTTATTTCTCTCTCATGTGTTTGG 57.896 34.615 0.00 0.00 0.00 3.28
672 673 9.756461 GGTCGACTTCAAGATTAAGTTTATTTC 57.244 33.333 16.46 0.00 37.31 2.17
673 674 9.503399 AGGTCGACTTCAAGATTAAGTTTATTT 57.497 29.630 16.46 0.00 37.31 1.40
674 675 9.503399 AAGGTCGACTTCAAGATTAAGTTTATT 57.497 29.630 16.46 0.00 37.31 1.40
676 677 9.635520 CTAAGGTCGACTTCAAGATTAAGTTTA 57.364 33.333 16.46 0.00 40.64 2.01
677 678 8.148999 ACTAAGGTCGACTTCAAGATTAAGTTT 58.851 33.333 16.46 0.00 40.64 2.66
678 679 7.668492 ACTAAGGTCGACTTCAAGATTAAGTT 58.332 34.615 16.46 0.00 40.64 2.66
679 680 7.039923 TGACTAAGGTCGACTTCAAGATTAAGT 60.040 37.037 16.46 5.59 44.83 2.24
680 681 7.313646 TGACTAAGGTCGACTTCAAGATTAAG 58.686 38.462 16.46 2.71 44.83 1.85
681 682 7.223260 TGACTAAGGTCGACTTCAAGATTAA 57.777 36.000 16.46 0.00 44.83 1.40
682 683 6.829229 TGACTAAGGTCGACTTCAAGATTA 57.171 37.500 16.46 0.00 44.83 1.75
683 684 5.723672 TGACTAAGGTCGACTTCAAGATT 57.276 39.130 16.46 0.00 44.83 2.40
684 685 5.923733 ATGACTAAGGTCGACTTCAAGAT 57.076 39.130 16.46 0.00 44.83 2.40
685 686 5.723672 AATGACTAAGGTCGACTTCAAGA 57.276 39.130 16.46 0.00 44.83 3.02
686 687 5.696724 ACAAATGACTAAGGTCGACTTCAAG 59.303 40.000 16.46 11.50 44.83 3.02
687 688 5.607477 ACAAATGACTAAGGTCGACTTCAA 58.393 37.500 16.46 0.00 44.83 2.69
688 689 5.010719 AGACAAATGACTAAGGTCGACTTCA 59.989 40.000 16.46 10.54 44.83 3.02
689 690 5.471257 AGACAAATGACTAAGGTCGACTTC 58.529 41.667 16.46 0.00 44.83 3.01
690 691 5.010719 TGAGACAAATGACTAAGGTCGACTT 59.989 40.000 16.46 4.52 44.83 3.01
691 692 4.523173 TGAGACAAATGACTAAGGTCGACT 59.477 41.667 16.46 0.00 44.83 4.18
692 693 4.806330 TGAGACAAATGACTAAGGTCGAC 58.194 43.478 7.13 7.13 44.83 4.20
693 694 5.661056 ATGAGACAAATGACTAAGGTCGA 57.339 39.130 0.00 0.00 44.83 4.20
694 695 5.869344 TGAATGAGACAAATGACTAAGGTCG 59.131 40.000 0.00 0.00 44.83 4.79
695 696 7.856145 ATGAATGAGACAAATGACTAAGGTC 57.144 36.000 0.00 0.00 42.42 3.85
696 697 9.911788 ATAATGAATGAGACAAATGACTAAGGT 57.088 29.630 0.00 0.00 0.00 3.50
698 699 9.661187 GCATAATGAATGAGACAAATGACTAAG 57.339 33.333 0.00 0.00 37.86 2.18
699 700 9.176460 TGCATAATGAATGAGACAAATGACTAA 57.824 29.630 0.00 0.00 37.86 2.24
700 701 8.735692 TGCATAATGAATGAGACAAATGACTA 57.264 30.769 0.00 0.00 37.86 2.59
701 702 7.634671 TGCATAATGAATGAGACAAATGACT 57.365 32.000 0.00 0.00 37.86 3.41
702 703 8.867112 AATGCATAATGAATGAGACAAATGAC 57.133 30.769 0.00 0.00 37.86 3.06
707 708 9.511272 AGCTATAATGCATAATGAATGAGACAA 57.489 29.630 0.00 0.00 37.86 3.18
708 709 9.511272 AAGCTATAATGCATAATGAATGAGACA 57.489 29.630 0.00 0.00 37.86 3.41
709 710 9.770503 CAAGCTATAATGCATAATGAATGAGAC 57.229 33.333 0.00 0.00 37.86 3.36
710 711 9.511272 ACAAGCTATAATGCATAATGAATGAGA 57.489 29.630 0.00 0.00 37.86 3.27
718 719 9.630098 GCATTTGTACAAGCTATAATGCATAAT 57.370 29.630 25.20 5.21 44.29 1.28
723 724 5.396362 CGTGCATTTGTACAAGCTATAATGC 59.604 40.000 24.13 24.13 44.82 3.56
724 725 5.909054 CCGTGCATTTGTACAAGCTATAATG 59.091 40.000 17.64 13.89 0.00 1.90
725 726 5.008613 CCCGTGCATTTGTACAAGCTATAAT 59.991 40.000 17.64 2.51 0.00 1.28
726 727 4.334203 CCCGTGCATTTGTACAAGCTATAA 59.666 41.667 17.64 0.23 0.00 0.98
727 728 3.874543 CCCGTGCATTTGTACAAGCTATA 59.125 43.478 17.64 0.91 0.00 1.31
728 729 2.682856 CCCGTGCATTTGTACAAGCTAT 59.317 45.455 17.64 3.82 0.00 2.97
729 730 2.080693 CCCGTGCATTTGTACAAGCTA 58.919 47.619 17.64 1.60 0.00 3.32
730 731 0.881118 CCCGTGCATTTGTACAAGCT 59.119 50.000 17.64 4.54 0.00 3.74
731 732 0.732538 GCCCGTGCATTTGTACAAGC 60.733 55.000 8.56 10.40 37.47 4.01
732 733 0.454285 CGCCCGTGCATTTGTACAAG 60.454 55.000 8.56 0.00 37.32 3.16
733 734 1.167155 ACGCCCGTGCATTTGTACAA 61.167 50.000 3.59 3.59 37.32 2.41
734 735 1.167155 AACGCCCGTGCATTTGTACA 61.167 50.000 0.00 0.00 37.32 2.90
735 736 0.453782 GAACGCCCGTGCATTTGTAC 60.454 55.000 0.00 0.00 37.32 2.90
736 737 0.604243 AGAACGCCCGTGCATTTGTA 60.604 50.000 1.17 0.00 37.32 2.41
737 738 0.604243 TAGAACGCCCGTGCATTTGT 60.604 50.000 1.17 0.00 37.32 2.83
738 739 0.179200 GTAGAACGCCCGTGCATTTG 60.179 55.000 1.17 0.00 37.32 2.32
739 740 0.321298 AGTAGAACGCCCGTGCATTT 60.321 50.000 1.17 0.00 37.32 2.32
740 741 0.533491 TAGTAGAACGCCCGTGCATT 59.467 50.000 1.17 0.00 37.32 3.56
741 742 0.102481 CTAGTAGAACGCCCGTGCAT 59.898 55.000 1.17 0.00 37.32 3.96
742 743 1.246056 ACTAGTAGAACGCCCGTGCA 61.246 55.000 3.59 0.00 37.32 4.57
743 744 0.108945 AACTAGTAGAACGCCCGTGC 60.109 55.000 3.59 0.00 0.00 5.34
744 745 2.358939 AAACTAGTAGAACGCCCGTG 57.641 50.000 3.59 0.00 0.00 4.94
745 746 3.391506 AAAAACTAGTAGAACGCCCGT 57.608 42.857 3.59 0.00 0.00 5.28
746 747 7.223387 ACATAATAAAAACTAGTAGAACGCCCG 59.777 37.037 3.59 0.00 0.00 6.13
747 748 8.429493 ACATAATAAAAACTAGTAGAACGCCC 57.571 34.615 3.59 0.00 0.00 6.13
756 757 9.297037 AGCACCTCAAACATAATAAAAACTAGT 57.703 29.630 0.00 0.00 0.00 2.57
862 869 1.202143 CCTCGCCGACTTTTTATTGCC 60.202 52.381 0.00 0.00 0.00 4.52
882 889 0.790814 GAGGTATAGGCGCGATTTGC 59.209 55.000 12.10 0.00 41.47 3.68
899 906 2.159014 TCCGTTGATATTTCCACCGGAG 60.159 50.000 9.46 0.00 31.21 4.63
973 1009 1.391485 CAGACCGAAAACTGCTCGATG 59.609 52.381 0.00 0.00 38.61 3.84
992 1028 0.611618 AAACCAAGCCATGCGATCCA 60.612 50.000 0.00 0.00 0.00 3.41
993 1029 0.532115 AAAACCAAGCCATGCGATCC 59.468 50.000 0.00 0.00 0.00 3.36
995 1031 0.171007 CGAAAACCAAGCCATGCGAT 59.829 50.000 0.00 0.00 0.00 4.58
1042 1078 0.028770 GTCGCGAGATGTGAGAGGAG 59.971 60.000 10.24 0.00 45.19 3.69
1071 1107 2.665185 AGCCGAGTTGTTGTCGCC 60.665 61.111 0.00 0.00 36.06 5.54
1072 1108 2.551270 CAGCCGAGTTGTTGTCGC 59.449 61.111 0.00 0.00 36.06 5.19
1075 1111 1.071471 CTCCCAGCCGAGTTGTTGT 59.929 57.895 0.00 0.00 0.00 3.32
1077 1113 2.032681 GCTCCCAGCCGAGTTGTT 59.967 61.111 0.00 0.00 34.48 2.83
1125 1161 3.392431 CGCAGCCATGACTCGAAG 58.608 61.111 0.00 0.00 0.00 3.79
1228 1264 1.004560 CATATGGGATGCCGAGCGT 60.005 57.895 0.00 0.00 0.00 5.07
1368 1407 5.403766 GTGACGACTGATATAGAAATGCAGG 59.596 44.000 0.00 0.00 0.00 4.85
1451 1514 8.518702 AGAAAAGGAAGAAGCAATCTGAATTAC 58.481 33.333 0.00 0.00 38.79 1.89
1461 1524 5.930837 TTTCCAAGAAAAGGAAGAAGCAA 57.069 34.783 0.00 0.00 45.25 3.91
1471 1534 6.183360 TGTCTACTTGCCTTTTCCAAGAAAAG 60.183 38.462 18.58 18.58 41.64 2.27
1486 1549 4.256920 ACATTCACATCCTGTCTACTTGC 58.743 43.478 0.00 0.00 0.00 4.01
1630 1771 3.664107 GTGAGCAACCTGTCAGTATCAA 58.336 45.455 0.00 0.00 0.00 2.57
1663 1815 8.415950 AGGAAGAGATGTAGACATATAACAGG 57.584 38.462 0.00 0.00 36.57 4.00
1672 1824 6.531503 AATTCGAAGGAAGAGATGTAGACA 57.468 37.500 3.35 0.00 35.19 3.41
1686 1838 1.468520 ACATTGGTGCGAATTCGAAGG 59.531 47.619 31.01 18.92 43.02 3.46
1740 1892 3.803231 TCACTTGATTGCAACACATTTGC 59.197 39.130 0.00 1.95 45.11 3.68
1809 1962 9.856803 ACAAACAAACAAACAATAATTAATCGC 57.143 25.926 0.00 0.00 0.00 4.58
1885 2066 5.482006 TGATCTATCCACTTTGTGTCACTG 58.518 41.667 4.27 0.00 0.00 3.66
1916 2097 6.425721 CCTAATAATTTCCGTTTCGCCTCATA 59.574 38.462 0.00 0.00 0.00 2.15
1973 2168 4.093850 GCTACGACCGTACAATCCAAAAAT 59.906 41.667 0.00 0.00 0.00 1.82
2114 2311 1.933500 GCTTGATTGCAGCACACTTGG 60.934 52.381 0.00 0.00 0.00 3.61
2134 2331 4.758251 TGGCTGCCACGATGGTCG 62.758 66.667 19.30 0.00 46.93 4.79
2143 2340 1.484038 AGAGTTTTGTTTGGCTGCCA 58.516 45.000 19.30 19.30 0.00 4.92
2272 2469 2.334838 GTTTCGTCTCATTGTAGGCGT 58.665 47.619 9.01 0.00 44.73 5.68
2481 2820 5.408604 CCACTGTACAGCAAAGGTTAACTAG 59.591 44.000 22.90 0.00 0.00 2.57
2482 2821 5.163280 ACCACTGTACAGCAAAGGTTAACTA 60.163 40.000 22.90 0.00 32.45 2.24
2483 2822 4.134563 CCACTGTACAGCAAAGGTTAACT 58.865 43.478 22.90 0.00 0.00 2.24
2484 2823 3.881089 ACCACTGTACAGCAAAGGTTAAC 59.119 43.478 22.90 0.00 32.45 2.01
2485 2824 4.159244 ACCACTGTACAGCAAAGGTTAA 57.841 40.909 22.90 0.00 32.45 2.01
2486 2825 3.849563 ACCACTGTACAGCAAAGGTTA 57.150 42.857 22.90 0.00 32.45 2.85
2879 3470 6.813649 TGCTGAACTGACTGAGTTATAATGTC 59.186 38.462 0.00 0.00 45.48 3.06
3019 3610 2.301346 CCTGAAGGTCAAGCAACAACT 58.699 47.619 0.00 0.00 0.00 3.16
3509 4395 2.546368 TGTCAAATGGTCGACGAAAAGG 59.454 45.455 9.92 0.00 34.78 3.11
3893 4780 2.596923 TCAATGGCAACCGCAGCA 60.597 55.556 0.00 0.00 41.24 4.41
3920 4807 9.451002 CGGACTACAATCTATAGGATTCTCTAA 57.549 37.037 0.00 0.00 42.20 2.10
3921 4808 8.604184 ACGGACTACAATCTATAGGATTCTCTA 58.396 37.037 0.00 0.00 42.20 2.43
3922 4809 7.463431 ACGGACTACAATCTATAGGATTCTCT 58.537 38.462 0.00 0.00 42.20 3.10
3923 4810 7.690952 ACGGACTACAATCTATAGGATTCTC 57.309 40.000 0.00 0.00 42.20 2.87
3924 4811 9.398538 GATACGGACTACAATCTATAGGATTCT 57.601 37.037 0.00 0.00 42.20 2.40
3925 4812 9.175312 TGATACGGACTACAATCTATAGGATTC 57.825 37.037 0.00 0.00 42.20 2.52
3926 4813 9.529823 TTGATACGGACTACAATCTATAGGATT 57.470 33.333 0.00 0.00 44.66 3.01
3927 4814 9.529823 TTTGATACGGACTACAATCTATAGGAT 57.470 33.333 0.00 0.00 35.97 3.24
3928 4815 8.929260 TTTGATACGGACTACAATCTATAGGA 57.071 34.615 0.00 0.00 0.00 2.94
3934 4821 9.477484 GATTGTATTTGATACGGACTACAATCT 57.523 33.333 18.79 0.00 44.90 2.40
3935 4822 9.477484 AGATTGTATTTGATACGGACTACAATC 57.523 33.333 18.57 18.57 46.71 2.67
3936 4823 9.261180 CAGATTGTATTTGATACGGACTACAAT 57.739 33.333 5.66 5.66 40.56 2.71
3937 4824 8.255206 ACAGATTGTATTTGATACGGACTACAA 58.745 33.333 0.00 0.00 38.59 2.41
3938 4825 7.778083 ACAGATTGTATTTGATACGGACTACA 58.222 34.615 0.00 0.00 38.59 2.74
3939 4826 9.395707 CTACAGATTGTATTTGATACGGACTAC 57.604 37.037 0.00 0.00 38.59 2.73
3940 4827 8.573885 CCTACAGATTGTATTTGATACGGACTA 58.426 37.037 0.00 0.00 38.59 2.59
3941 4828 7.069578 ACCTACAGATTGTATTTGATACGGACT 59.930 37.037 0.00 0.00 38.59 3.85
3942 4829 7.208080 ACCTACAGATTGTATTTGATACGGAC 58.792 38.462 0.00 0.00 38.59 4.79
3943 4830 7.356089 ACCTACAGATTGTATTTGATACGGA 57.644 36.000 0.00 0.00 38.59 4.69
3944 4831 9.193133 CTAACCTACAGATTGTATTTGATACGG 57.807 37.037 0.00 0.00 38.59 4.02
3945 4832 9.961265 TCTAACCTACAGATTGTATTTGATACG 57.039 33.333 0.00 0.00 38.59 3.06
3953 4840 9.823647 CAAGTTGATCTAACCTACAGATTGTAT 57.176 33.333 0.00 0.00 40.24 2.29
3954 4841 8.812972 ACAAGTTGATCTAACCTACAGATTGTA 58.187 33.333 10.54 0.00 40.24 2.41
3955 4842 7.680730 ACAAGTTGATCTAACCTACAGATTGT 58.319 34.615 10.54 0.00 40.24 2.71
3956 4843 9.088512 GTACAAGTTGATCTAACCTACAGATTG 57.911 37.037 10.54 0.00 40.24 2.67
3957 4844 9.036980 AGTACAAGTTGATCTAACCTACAGATT 57.963 33.333 10.54 0.00 40.24 2.40
3958 4845 8.596781 AGTACAAGTTGATCTAACCTACAGAT 57.403 34.615 10.54 0.00 40.24 2.90
3959 4846 7.122353 GGAGTACAAGTTGATCTAACCTACAGA 59.878 40.741 10.54 0.00 40.24 3.41
3960 4847 7.093902 TGGAGTACAAGTTGATCTAACCTACAG 60.094 40.741 10.54 0.00 40.24 2.74
3961 4848 6.722590 TGGAGTACAAGTTGATCTAACCTACA 59.277 38.462 10.54 0.00 40.24 2.74
3962 4849 7.034397 GTGGAGTACAAGTTGATCTAACCTAC 58.966 42.308 10.54 0.00 40.24 3.18
3963 4850 6.127814 CGTGGAGTACAAGTTGATCTAACCTA 60.128 42.308 10.54 0.00 40.24 3.08
3964 4851 5.336531 CGTGGAGTACAAGTTGATCTAACCT 60.337 44.000 10.54 0.00 40.24 3.50
3965 4852 4.863131 CGTGGAGTACAAGTTGATCTAACC 59.137 45.833 10.54 6.41 40.24 2.85
3966 4853 5.467705 ACGTGGAGTACAAGTTGATCTAAC 58.532 41.667 10.54 8.11 38.71 2.34
3967 4854 5.717078 ACGTGGAGTACAAGTTGATCTAA 57.283 39.130 10.54 0.00 38.71 2.10
3975 4862 5.362263 ACATTACAAACGTGGAGTACAAGT 58.638 37.500 0.00 0.00 43.82 3.16
3976 4863 5.107220 GGACATTACAAACGTGGAGTACAAG 60.107 44.000 0.00 0.00 34.52 3.16
3977 4864 4.751098 GGACATTACAAACGTGGAGTACAA 59.249 41.667 0.00 0.00 0.00 2.41
3978 4865 4.039488 AGGACATTACAAACGTGGAGTACA 59.961 41.667 0.00 0.00 0.00 2.90
3979 4866 4.563061 AGGACATTACAAACGTGGAGTAC 58.437 43.478 0.00 0.00 0.00 2.73
3980 4867 4.877378 AGGACATTACAAACGTGGAGTA 57.123 40.909 0.00 0.00 0.00 2.59
3981 4868 3.764237 AGGACATTACAAACGTGGAGT 57.236 42.857 0.00 0.00 0.00 3.85
3982 4869 3.364964 GCAAGGACATTACAAACGTGGAG 60.365 47.826 0.00 0.00 0.00 3.86
3983 4870 2.550606 GCAAGGACATTACAAACGTGGA 59.449 45.455 0.00 0.00 0.00 4.02
3984 4871 2.552315 AGCAAGGACATTACAAACGTGG 59.448 45.455 0.00 0.00 0.00 4.94
3985 4872 3.003275 ACAGCAAGGACATTACAAACGTG 59.997 43.478 0.00 0.00 0.00 4.49
3986 4873 3.003275 CACAGCAAGGACATTACAAACGT 59.997 43.478 0.00 0.00 0.00 3.99
3987 4874 3.003275 ACACAGCAAGGACATTACAAACG 59.997 43.478 0.00 0.00 0.00 3.60
3988 4875 4.568152 ACACAGCAAGGACATTACAAAC 57.432 40.909 0.00 0.00 0.00 2.93
3989 4876 9.845740 ATATATACACAGCAAGGACATTACAAA 57.154 29.630 0.00 0.00 0.00 2.83
4018 4905 8.023128 GCCTCAATCGTTTACATTGCATATTAT 58.977 33.333 0.00 0.00 32.17 1.28
4019 4906 7.359595 GCCTCAATCGTTTACATTGCATATTA 58.640 34.615 0.00 0.00 32.17 0.98
4020 4907 6.208644 GCCTCAATCGTTTACATTGCATATT 58.791 36.000 0.00 0.00 32.17 1.28
4021 4908 5.560760 CGCCTCAATCGTTTACATTGCATAT 60.561 40.000 0.00 0.00 32.17 1.78
4022 4909 4.260579 CGCCTCAATCGTTTACATTGCATA 60.261 41.667 0.00 0.00 32.17 3.14
4023 4910 3.487376 CGCCTCAATCGTTTACATTGCAT 60.487 43.478 0.00 0.00 32.17 3.96
4024 4911 2.159585 CGCCTCAATCGTTTACATTGCA 60.160 45.455 0.00 0.00 32.17 4.08
4025 4912 2.095213 TCGCCTCAATCGTTTACATTGC 59.905 45.455 0.00 0.00 32.17 3.56
4026 4913 3.785505 GCTCGCCTCAATCGTTTACATTG 60.786 47.826 0.00 0.00 33.22 2.82
4027 4914 2.351726 GCTCGCCTCAATCGTTTACATT 59.648 45.455 0.00 0.00 0.00 2.71
4028 4915 1.933853 GCTCGCCTCAATCGTTTACAT 59.066 47.619 0.00 0.00 0.00 2.29
4029 4916 1.337354 TGCTCGCCTCAATCGTTTACA 60.337 47.619 0.00 0.00 0.00 2.41
4030 4917 1.355971 TGCTCGCCTCAATCGTTTAC 58.644 50.000 0.00 0.00 0.00 2.01
4031 4918 2.087501 TTGCTCGCCTCAATCGTTTA 57.912 45.000 0.00 0.00 0.00 2.01
4032 4919 1.453155 ATTGCTCGCCTCAATCGTTT 58.547 45.000 0.00 0.00 28.76 3.60
4033 4920 1.131126 CAATTGCTCGCCTCAATCGTT 59.869 47.619 0.00 0.00 33.41 3.85
4034 4921 0.729116 CAATTGCTCGCCTCAATCGT 59.271 50.000 0.00 0.00 33.41 3.73
4035 4922 0.590732 GCAATTGCTCGCCTCAATCG 60.591 55.000 23.21 0.00 38.21 3.34
4036 4923 0.452987 TGCAATTGCTCGCCTCAATC 59.547 50.000 29.37 0.00 42.66 2.67
4037 4924 0.454600 CTGCAATTGCTCGCCTCAAT 59.545 50.000 29.37 0.00 42.66 2.57
4038 4925 1.878070 CTGCAATTGCTCGCCTCAA 59.122 52.632 29.37 7.29 42.66 3.02
4039 4926 2.693762 GCTGCAATTGCTCGCCTCA 61.694 57.895 29.37 8.03 42.66 3.86
4040 4927 2.101770 GCTGCAATTGCTCGCCTC 59.898 61.111 29.37 9.58 42.66 4.70
4041 4928 3.446570 GGCTGCAATTGCTCGCCT 61.447 61.111 35.97 0.00 46.81 5.52
4045 4932 1.099879 AGATCGGGCTGCAATTGCTC 61.100 55.000 29.37 20.35 42.66 4.26
4046 4933 0.682209 AAGATCGGGCTGCAATTGCT 60.682 50.000 29.37 8.90 42.66 3.91
4047 4934 0.526954 CAAGATCGGGCTGCAATTGC 60.527 55.000 23.69 23.69 42.50 3.56
4048 4935 0.813184 ACAAGATCGGGCTGCAATTG 59.187 50.000 0.00 0.00 0.00 2.32
4049 4936 1.549203 AACAAGATCGGGCTGCAATT 58.451 45.000 0.50 0.00 0.00 2.32
4050 4937 1.549203 AAACAAGATCGGGCTGCAAT 58.451 45.000 0.50 0.00 0.00 3.56
4051 4938 1.269448 GAAAACAAGATCGGGCTGCAA 59.731 47.619 0.50 0.00 0.00 4.08
4052 4939 0.881118 GAAAACAAGATCGGGCTGCA 59.119 50.000 0.50 0.00 0.00 4.41
4053 4940 0.171231 GGAAAACAAGATCGGGCTGC 59.829 55.000 0.00 0.00 0.00 5.25
4054 4941 1.826385 AGGAAAACAAGATCGGGCTG 58.174 50.000 0.00 0.00 0.00 4.85
4055 4942 2.355818 GGTAGGAAAACAAGATCGGGCT 60.356 50.000 0.00 0.00 0.00 5.19
4056 4943 2.014857 GGTAGGAAAACAAGATCGGGC 58.985 52.381 0.00 0.00 0.00 6.13
4057 4944 3.629142 AGGTAGGAAAACAAGATCGGG 57.371 47.619 0.00 0.00 0.00 5.14
4058 4945 6.583562 AGATTAGGTAGGAAAACAAGATCGG 58.416 40.000 0.00 0.00 0.00 4.18
4059 4946 9.765795 ATTAGATTAGGTAGGAAAACAAGATCG 57.234 33.333 0.00 0.00 0.00 3.69
4070 4957 9.998106 GCAAATCTGTAATTAGATTAGGTAGGA 57.002 33.333 4.29 0.00 44.43 2.94
4127 5014 8.957466 TCGGATGGTACTAGATTTAGATATGTG 58.043 37.037 0.00 0.00 0.00 3.21
4128 5015 9.702253 ATCGGATGGTACTAGATTTAGATATGT 57.298 33.333 0.00 0.00 0.00 2.29
4133 5020 9.976776 AATAGATCGGATGGTACTAGATTTAGA 57.023 33.333 0.00 0.00 0.00 2.10
4138 5025 6.096141 CAGCAATAGATCGGATGGTACTAGAT 59.904 42.308 0.00 0.00 0.00 1.98
4169 5056 4.032672 CACAAATCAAGCTTGCACGAAAAA 59.967 37.500 21.99 1.87 0.00 1.94
4198 5086 1.068474 CTACGACAGGGAAAGCAACG 58.932 55.000 0.00 0.00 0.00 4.10
4206 5094 1.303888 AGAACGGCTACGACAGGGA 60.304 57.895 0.00 0.00 44.60 4.20
4209 5097 1.779569 AAACAGAACGGCTACGACAG 58.220 50.000 0.00 0.00 44.60 3.51
4219 5107 0.602905 AGGCCGGAGAAAACAGAACG 60.603 55.000 5.05 0.00 0.00 3.95
4223 5111 0.245539 TACGAGGCCGGAGAAAACAG 59.754 55.000 5.05 0.00 40.78 3.16
4232 5120 2.890474 GCACACATACGAGGCCGG 60.890 66.667 0.00 0.00 40.78 6.13
4240 5128 2.672874 TCGATGAAAGCTGCACACATAC 59.327 45.455 1.02 0.00 0.00 2.39
4311 5200 6.656902 TCTCATTAGTAGAGAACGGTAAGGA 58.343 40.000 0.00 0.00 39.07 3.36
4312 5201 6.016943 CCTCTCATTAGTAGAGAACGGTAAGG 60.017 46.154 1.72 0.00 42.63 2.69
4316 5205 3.633065 GCCTCTCATTAGTAGAGAACGGT 59.367 47.826 1.72 0.00 42.63 4.83
4317 5206 3.632604 TGCCTCTCATTAGTAGAGAACGG 59.367 47.826 1.72 0.00 42.63 4.44
4365 5264 8.584157 AGATAGAGATGAAGCGAGTGAATTAAT 58.416 33.333 0.00 0.00 0.00 1.40
4366 5265 7.946207 AGATAGAGATGAAGCGAGTGAATTAA 58.054 34.615 0.00 0.00 0.00 1.40
4367 5266 7.517614 AGATAGAGATGAAGCGAGTGAATTA 57.482 36.000 0.00 0.00 0.00 1.40
4368 5267 6.403866 AGATAGAGATGAAGCGAGTGAATT 57.596 37.500 0.00 0.00 0.00 2.17
4399 5298 6.651643 CCAAATCAATGAGAAGGCAAAATTGA 59.348 34.615 0.00 0.00 40.45 2.57
4401 5300 6.428771 CACCAAATCAATGAGAAGGCAAAATT 59.571 34.615 0.00 0.00 0.00 1.82
4408 5307 4.813027 CCAACACCAAATCAATGAGAAGG 58.187 43.478 0.00 0.00 0.00 3.46
4433 5332 3.117851 GCCCTTCTTTTATGGGTAGAGCT 60.118 47.826 0.00 0.00 43.30 4.09
4455 5354 3.114616 CAAGTGACGAGCGCCAGG 61.115 66.667 2.29 0.00 0.00 4.45
4464 5363 1.795286 GAGTGAAGAAGGCAAGTGACG 59.205 52.381 0.00 0.00 0.00 4.35
4468 5367 5.753721 AATAGAGAGTGAAGAAGGCAAGT 57.246 39.130 0.00 0.00 0.00 3.16
4621 5520 5.545063 TCTTGTGGTGAGAAATGTAGACA 57.455 39.130 0.00 0.00 0.00 3.41
4627 5526 6.638610 ACTCTAGATCTTGTGGTGAGAAATG 58.361 40.000 0.00 0.00 0.00 2.32
4641 5540 9.453572 TTGCATGAAAATTACAACTCTAGATCT 57.546 29.630 0.00 0.00 0.00 2.75
4669 5568 4.009675 ACGTGCAGTGGACAATCATAAAT 58.990 39.130 15.55 0.00 0.00 1.40
4683 5582 3.537580 TCAAAAGGAAGTTACGTGCAGT 58.462 40.909 0.00 0.00 0.00 4.40
4688 5587 6.127842 ACACAAACATCAAAAGGAAGTTACGT 60.128 34.615 0.00 0.00 36.48 3.57
4692 5591 6.756542 GCTTACACAAACATCAAAAGGAAGTT 59.243 34.615 0.00 0.00 38.98 2.66
4714 5613 0.823356 AATCAACAGGCCACACGCTT 60.823 50.000 5.01 0.00 37.74 4.68
4715 5614 1.228245 AATCAACAGGCCACACGCT 60.228 52.632 5.01 0.00 37.74 5.07
4754 5653 4.359706 CCAGGTGCAAACAAAAAGACTAC 58.640 43.478 0.00 0.00 0.00 2.73
4770 5670 1.679977 CACAATCCAGGCCCAGGTG 60.680 63.158 11.36 6.35 0.00 4.00
4771 5671 2.765969 CACAATCCAGGCCCAGGT 59.234 61.111 11.36 0.00 0.00 4.00
4784 5684 3.957497 ACAAACATAAAGGACCAGCACAA 59.043 39.130 0.00 0.00 0.00 3.33
4787 5687 3.561143 ACACAAACATAAAGGACCAGCA 58.439 40.909 0.00 0.00 0.00 4.41
4803 5708 0.673985 CACTCTCCAGACGGACACAA 59.326 55.000 0.00 0.00 35.91 3.33
4813 5718 2.089980 CTTCCAATTGGCACTCTCCAG 58.910 52.381 20.33 1.69 37.44 3.86
4854 5759 2.288152 GCGAACAGAAAATGCTTGGGAA 60.288 45.455 0.00 0.00 0.00 3.97
4855 5760 1.269448 GCGAACAGAAAATGCTTGGGA 59.731 47.619 0.00 0.00 0.00 4.37
4862 5767 3.070018 AGAGAGTGGCGAACAGAAAATG 58.930 45.455 0.00 0.00 0.00 2.32
4893 5798 8.806429 AACAAACAAGGGAAAAATCAAAAGAT 57.194 26.923 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.