AutoCloner

Multiple sequence alignment - TraesCS2D01G074500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G074500	chr2D	100.000	4488	0	0	1	4488	31895155	31899642	0.000000e+00	8288
1	TraesCS2D01G074500	chr2D	86.207	232	25	4	1	231	197478566	197478341	1.250000e-60	244
2	TraesCS2D01G074500	chr2A	94.200	4155	205	15	1	4151	33951071	33955193	0.000000e+00	6305
3	TraesCS2D01G074500	chr2A	95.038	2499	102	8	1	2497	33785289	33787767	0.000000e+00	3908
4	TraesCS2D01G074500	chr2A	94.214	2005	98	8	2491	4488	33790456	33792449	0.000000e+00	3044
5	TraesCS2D01G074500	chr5D	87.379	3106	336	40	666	3749	227544151	227547222	0.000000e+00	3513
6	TraesCS2D01G074500	chr5B	86.453	3211	356	44	577	3749	250951439	250954608	0.000000e+00	3446
7	TraesCS2D01G074500	chr5A	87.679	2938	320	32	577	3496	305277991	305280904	0.000000e+00	3382
8	TraesCS2D01G074500	chr5A	84.646	254	35	3	3496	3749	305280968	305281217	2.680000e-62	250
9	TraesCS2D01G074500	chr2B	93.902	2132	93	13	1649	3752	52511921	52509799	0.000000e+00	3182
10	TraesCS2D01G074500	chr2B	93.409	2109	110	16	1649	3752	52223797	52225881	0.000000e+00	3097
11	TraesCS2D01G074500	chr2B	91.927	1375	109	2	231	1603	52222425	52223799	0.000000e+00	1923
12	TraesCS2D01G074500	chr2B	92.073	1375	88	5	231	1603	52513274	52511919	0.000000e+00	1916
13	TraesCS2D01G074500	chr2B	86.325	234	25	3	1	232	217602044	217602272	9.640000e-62	248
14	TraesCS2D01G074500	chr6D	81.682	3128	478	62	548	3608	441714633	441711534	0.000000e+00	2514
15	TraesCS2D01G074500	chr6D	88.745	231	22	1	1	231	367044662	367044888	3.420000e-71	279
16	TraesCS2D01G074500	chr6B	81.463	3145	457	85	548	3608	667248813	667245711	0.000000e+00	2462
17	TraesCS2D01G074500	chr6A	81.042	3128	479	71	548	3598	590896662	590893572	0.000000e+00	2386
18	TraesCS2D01G074500	chr3D	90.566	318	29	1	231	547	36911367	36911684	1.930000e-113	420
19	TraesCS2D01G074500	chr3B	90.566	318	29	1	231	547	631007275	631007592	1.930000e-113	420
20	TraesCS2D01G074500	chr3B	87.879	231	28	0	1	231	306667119	306666889	5.720000e-69	272
21	TraesCS2D01G074500	chr3B	86.463	229	30	1	1	229	717636172	717636399	2.680000e-62	250
22	TraesCS2D01G074500	chr1D	90.566	318	29	1	231	547	113129799	113130116	1.930000e-113	420
23	TraesCS2D01G074500	chr1D	90.735	313	26	3	237	547	21289943	21289632	8.980000e-112	414
24	TraesCS2D01G074500	chr1D	86.344	227	30	1	1	227	292085614	292085389	3.470000e-61	246
25	TraesCS2D01G074500	chr3A	90.000	320	29	3	231	547	466817394	466817075	1.160000e-110	411
26	TraesCS2D01G074500	chr4A	82.934	334	51	6	232	562	599078877	599078547	3.390000e-76	296
27	TraesCS2D01G074500	chr1B	89.083	229	25	0	1	229	393081531	393081303	7.350000e-73	285
28	TraesCS2D01G074500	chr7D	89.177	231	19	2	1	231	361292421	361292645	2.640000e-72	283
29	TraesCS2D01G074500	chr7D	87.336	229	29	0	1	229	133330363	133330135	3.440000e-66	263

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G074500	chr2D	31895155	31899642	4487	False	8288	8288	100.0000	1	4488	1	chr2D.!!$F1	4487
1	TraesCS2D01G074500	chr2A	33951071	33955193	4122	False	6305	6305	94.2000	1	4151	1	chr2A.!!$F1	4150
2	TraesCS2D01G074500	chr2A	33785289	33792449	7160	False	3476	3908	94.6260	1	4488	2	chr2A.!!$F2	4487
3	TraesCS2D01G074500	chr5D	227544151	227547222	3071	False	3513	3513	87.3790	666	3749	1	chr5D.!!$F1	3083
4	TraesCS2D01G074500	chr5B	250951439	250954608	3169	False	3446	3446	86.4530	577	3749	1	chr5B.!!$F1	3172
5	TraesCS2D01G074500	chr5A	305277991	305281217	3226	False	1816	3382	86.1625	577	3749	2	chr5A.!!$F1	3172
6	TraesCS2D01G074500	chr2B	52509799	52513274	3475	True	2549	3182	92.9875	231	3752	2	chr2B.!!$R1	3521
7	TraesCS2D01G074500	chr2B	52222425	52225881	3456	False	2510	3097	92.6680	231	3752	2	chr2B.!!$F2	3521
8	TraesCS2D01G074500	chr6D	441711534	441714633	3099	True	2514	2514	81.6820	548	3608	1	chr6D.!!$R1	3060
9	TraesCS2D01G074500	chr6B	667245711	667248813	3102	True	2462	2462	81.4630	548	3608	1	chr6B.!!$R1	3060
10	TraesCS2D01G074500	chr6A	590893572	590896662	3090	True	2386	2386	81.0420	548	3598	1	chr6A.!!$R1	3050

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
220	221	0.107165	GGAACCAGGGGCACTATCAC	60.107	60.000	0.00	0.00	3.06	F
1123	1146	1.392589	CGGGGTCCCATTGAATCAAG	58.607	55.000	10.98	35.37	3.02	F
2330	2396	1.827789	TTTCGGCTTGCAGGTTGCT	60.828	52.632	0.00	45.31	3.91	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1576	1608	0.597568	TTTGCCTTGCTTGGTGATCG	59.402	50.0	0.00	3.69	R
2876	5667	6.443792	GGTTTGACACCTATAAGTTTGGTTG	58.556	40.0	43.29	3.77	R
3939	6831	0.105964	TTCGGGTAGATTGGATGGCG	59.894	55.0	0.00	5.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
75	76	0.773644	AAACAGCCCCACTCATCAGT	59.226	50.000	0.00	0.00	0.00	3.41
116	117	0.454196	GCCAACAACAAACGTCCAGT	59.546	50.000	0.00	0.00	0.00	4.00
117	118	1.135228	GCCAACAACAAACGTCCAGTT	60.135	47.619	0.00	0.00	46.76	3.16
127	128	3.708563	AACGTCCAGTTTGACCATTTG	57.291	42.857	0.00	0.00	40.88	2.32
128	129	2.650322	ACGTCCAGTTTGACCATTTGT	58.350	42.857	0.00	0.00	31.35	2.83
129	130	2.357637	ACGTCCAGTTTGACCATTTGTG	59.642	45.455	0.00	0.00	31.35	3.33
130	131	2.616376	CGTCCAGTTTGACCATTTGTGA	59.384	45.455	0.00	0.00	31.35	3.58
131	132	3.303990	CGTCCAGTTTGACCATTTGTGAG	60.304	47.826	0.00	0.00	31.35	3.51
132	133	3.882888	GTCCAGTTTGACCATTTGTGAGA	59.117	43.478	0.00	0.00	0.00	3.27
133	134	4.023707	GTCCAGTTTGACCATTTGTGAGAG	60.024	45.833	0.00	0.00	0.00	3.20
134	135	3.885297	CCAGTTTGACCATTTGTGAGAGT	59.115	43.478	0.00	0.00	0.00	3.24
143	144	5.380043	ACCATTTGTGAGAGTTTCAGACAT	58.620	37.500	0.00	0.00	36.21	3.06
158	159	3.074390	TCAGACATGAGTGTGGGGAAAAT	59.926	43.478	0.00	0.00	39.36	1.82
161	162	3.573967	GACATGAGTGTGGGGAAAATTGT	59.426	43.478	0.00	0.00	39.09	2.71
168	169	3.312146	GTGTGGGGAAAATTGTGCAAAAG	59.688	43.478	0.00	0.00	0.00	2.27
189	190	0.320374	TTAGAGCGTGGGGACAACTG	59.680	55.000	0.00	0.00	46.06	3.16
220	221	0.107165	GGAACCAGGGGCACTATCAC	60.107	60.000	0.00	0.00	0.00	3.06
336	337	1.786579	GGAAAACTCAAATGCACGTGC	59.213	47.619	33.11	33.11	42.50	5.34
415	416	4.082463	AGTGTTGTTGGTGATCACGTTTTT	60.082	37.500	19.33	0.00	34.71	1.94
513	515	4.664150	TTGAATTGACCCAAACTTGTCC	57.336	40.909	0.00	0.00	0.00	4.02
564	566	4.908601	TCAAAGAGCAATCAACTAGGGA	57.091	40.909	0.00	0.00	0.00	4.20
565	567	5.241403	TCAAAGAGCAATCAACTAGGGAA	57.759	39.130	0.00	0.00	0.00	3.97
597	599	6.083383	TCCATATGGGGCATTAATTGTGAAT	58.917	36.000	21.78	0.00	37.22	2.57
1123	1146	1.392589	CGGGGTCCCATTGAATCAAG	58.607	55.000	10.98	0.00	35.37	3.02
1217	1242	2.859165	AGTTGAGGAGATGCCGAAAA	57.141	45.000	0.00	0.00	43.43	2.29
1316	1343	3.560896	CCACAAAATCCAGGCAAGTTTTG	59.439	43.478	13.30	13.30	43.53	2.44
1527	1558	7.667043	ACACATCTAGCGTTCTAAAATTTCA	57.333	32.000	0.00	0.00	0.00	2.69
1652	1688	5.590530	TTGTGCATCATAACCCATAAACC	57.409	39.130	0.00	0.00	0.00	3.27
2003	2046	3.483901	GCACAACAATTTATTGCCATGCG	60.484	43.478	2.46	0.00	41.38	4.73
2218	2277	9.420118	TCTATATTGACCTTAAATGCACCATTT	57.580	29.630	8.11	8.11	44.74	2.32
2330	2396	1.827789	TTTCGGCTTGCAGGTTGCT	60.828	52.632	0.00	0.00	45.31	3.91
2548	5309	2.364632	TCATGTTGCTTGGGTAATCCG	58.635	47.619	0.00	0.00	38.76	4.18
2731	5519	5.337410	GGTCTAGGAGGAAGACTTAAACCAC	60.337	48.000	3.50	0.00	42.48	4.16
2876	5667	5.186996	TGAAAACTTGAAGACATTGGCTC	57.813	39.130	0.00	0.00	0.00	4.70
3249	6051	1.259609	TATGTTCAAGGTCCGACGGT	58.740	50.000	14.79	0.00	0.00	4.83
3414	6216	8.359642	CACCACCAATTTATCCAAATATACTGG	58.640	37.037	0.00	0.00	35.64	4.00
3619	6506	4.910195	AGTTGAGTCATCCAGCATTGTAA	58.090	39.130	0.00	0.00	0.00	2.41
3639	6526	8.441312	TTGTAAGTTAGTTTTGATTTCCTCGT	57.559	30.769	0.00	0.00	0.00	4.18
3828	6720	1.565305	CTCGCACCTACTCATGAAGC	58.435	55.000	0.00	0.00	0.00	3.86
3875	6767	1.227999	TTGCGAGTGCTTCTTTCGGG	61.228	55.000	0.00	0.00	43.34	5.14
3888	6780	0.034896	TTTCGGGTGAAGTGAGCCTC	59.965	55.000	0.00	0.00	35.06	4.70
3939	6831	2.372172	TGAGGGTCTCTCAGGGTTTTTC	59.628	50.000	0.00	0.00	46.71	2.29
4000	6892	1.378514	AACGTGGTCCATGATGGGC	60.379	57.895	18.36	10.09	42.67	5.36
4015	6907	0.326595	TGGGCGTACATGATTGTGGT	59.673	50.000	0.00	0.00	36.53	4.16
4021	6913	3.611530	GCGTACATGATTGTGGTGCTTTT	60.612	43.478	0.00	0.00	36.53	2.27
4103	6995	1.739466	CACACATACTCGCCAGCAATT	59.261	47.619	0.00	0.00	0.00	2.32
4168	7060	0.895530	CTGGCCAACTAGTCCGAGAA	59.104	55.000	7.01	0.00	0.00	2.87
4203	7095	0.539986	GCAGTCCCTTCCGACCATTA	59.460	55.000	0.00	0.00	32.91	1.90
4206	7098	1.768870	AGTCCCTTCCGACCATTATGG	59.231	52.381	10.08	10.08	45.02	2.74
4209	7101	2.171870	TCCCTTCCGACCATTATGGAAC	59.828	50.000	19.23	10.23	40.96	3.62
4249	7141	1.620822	GTTGTTCCAGCCAGATTGGT	58.379	50.000	0.00	0.00	40.46	3.67
4255	7147	1.300971	CCAGCCAGATTGGTGTCACG	61.301	60.000	0.00	0.00	40.46	4.35
4266	7158	1.587054	GTGTCACGGTGGAGAGAGG	59.413	63.158	8.50	0.00	0.00	3.69
4282	7175	4.164258	GGCACAACCTTGCTCAGT	57.836	55.556	0.00	0.00	42.56	3.41
4293	7186	3.521126	ACCTTGCTCAGTTGATAGGTCAT	59.479	43.478	0.00	0.00	33.56	3.06
4301	7194	7.147976	GCTCAGTTGATAGGTCATTTTGTTTT	58.852	34.615	0.00	0.00	33.56	2.43
4306	7199	7.710475	AGTTGATAGGTCATTTTGTTTTTGTGG	59.290	33.333	0.00	0.00	33.56	4.17
4323	7216	2.104170	GTGGGTGTTTTGGTCCTTTCA	58.896	47.619	0.00	0.00	0.00	2.69
4343	7236	8.182227	CCTTTCATTAAGTCGGTTAAGATTTCC	58.818	37.037	0.00	0.00	34.01	3.13
4363	7256	4.178540	TCCTAGTTCATTCTTTTACGCCG	58.821	43.478	0.00	0.00	0.00	6.46
4383	7276	0.955428	CACATTGTGCACCGCCTACT	60.955	55.000	15.69	0.00	0.00	2.57
4392	7285	1.918800	ACCGCCTACTTTGGGCTCT	60.919	57.895	3.25	0.00	46.73	4.09
4397	7290	2.360844	GCCTACTTTGGGCTCTCTTTC	58.639	52.381	0.00	0.00	45.57	2.62
4456	7350	1.365633	GGGCATTTTTGGCGTGACA	59.634	52.632	0.00	0.00	34.95	3.58
4458	7352	0.031994	GGCATTTTTGGCGTGACAGT	59.968	50.000	0.00	0.00	0.00	3.55

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
97	98	0.454196	ACTGGACGTTTGTTGTTGGC	59.546	50.000	0.00	0.00	0.00	4.52
116	117	5.885352	TCTGAAACTCTCACAAATGGTCAAA	59.115	36.000	0.00	0.00	0.00	2.69
117	118	5.296780	GTCTGAAACTCTCACAAATGGTCAA	59.703	40.000	0.00	0.00	0.00	3.18
118	119	4.816385	GTCTGAAACTCTCACAAATGGTCA	59.184	41.667	0.00	0.00	0.00	4.02
119	120	4.816385	TGTCTGAAACTCTCACAAATGGTC	59.184	41.667	0.00	0.00	0.00	4.02
120	121	4.780815	TGTCTGAAACTCTCACAAATGGT	58.219	39.130	0.00	0.00	0.00	3.55
121	122	5.471116	TCATGTCTGAAACTCTCACAAATGG	59.529	40.000	0.00	0.00	0.00	3.16
122	123	6.204301	ACTCATGTCTGAAACTCTCACAAATG	59.796	38.462	0.00	0.00	0.00	2.32
123	124	6.204301	CACTCATGTCTGAAACTCTCACAAAT	59.796	38.462	0.00	0.00	0.00	2.32
124	125	5.525012	CACTCATGTCTGAAACTCTCACAAA	59.475	40.000	0.00	0.00	0.00	2.83
125	126	5.052481	CACTCATGTCTGAAACTCTCACAA	58.948	41.667	0.00	0.00	0.00	3.33
126	127	4.100035	ACACTCATGTCTGAAACTCTCACA	59.900	41.667	0.00	0.00	31.55	3.58
127	128	4.447054	CACACTCATGTCTGAAACTCTCAC	59.553	45.833	0.00	0.00	36.72	3.51
128	129	4.502087	CCACACTCATGTCTGAAACTCTCA	60.502	45.833	0.00	0.00	36.72	3.27
129	130	3.993081	CCACACTCATGTCTGAAACTCTC	59.007	47.826	0.00	0.00	36.72	3.20
130	131	3.244353	CCCACACTCATGTCTGAAACTCT	60.244	47.826	0.00	0.00	36.72	3.24
131	132	3.070018	CCCACACTCATGTCTGAAACTC	58.930	50.000	0.00	0.00	36.72	3.01
132	133	2.224621	CCCCACACTCATGTCTGAAACT	60.225	50.000	0.00	0.00	36.72	2.66
133	134	2.154462	CCCCACACTCATGTCTGAAAC	58.846	52.381	0.00	0.00	36.72	2.78
134	135	2.054021	TCCCCACACTCATGTCTGAAA	58.946	47.619	0.00	0.00	36.72	2.69
143	144	1.686052	GCACAATTTTCCCCACACTCA	59.314	47.619	0.00	0.00	0.00	3.41
158	159	3.488384	CCACGCTCTAAACTTTTGCACAA	60.488	43.478	0.00	0.00	0.00	3.33
161	162	1.606668	CCCACGCTCTAAACTTTTGCA	59.393	47.619	0.00	0.00	0.00	4.08
168	169	1.154197	GTTGTCCCCACGCTCTAAAC	58.846	55.000	0.00	0.00	0.00	2.01
189	190	2.427506	CCTGGTTCCTTAGTTGTGCTC	58.572	52.381	0.00	0.00	0.00	4.26
282	283	8.098912	CACATATTCCTGGATCATATCAGTTGA	58.901	37.037	0.00	0.00	0.00	3.18
283	284	8.098912	TCACATATTCCTGGATCATATCAGTTG	58.901	37.037	0.00	0.00	0.00	3.16
336	337	9.228636	CCTTTTATTTAACCGTTTATCATTCCG	57.771	33.333	0.00	0.00	0.00	4.30
415	416	7.741027	ACACTTAACGATATCTAAGATCCGA	57.259	36.000	15.21	0.00	0.00	4.55
564	566	8.503428	TTAATGCCCCATATGGATAATGTTTT	57.497	30.769	24.00	7.87	37.39	2.43
565	567	8.683776	ATTAATGCCCCATATGGATAATGTTT	57.316	30.769	24.00	9.31	37.39	2.83
709	714	4.447138	TGTTGACCCTAGTTGATTGGTT	57.553	40.909	0.00	0.00	0.00	3.67
1217	1242	3.771577	AACATCTCTTCCGTCAACCTT	57.228	42.857	0.00	0.00	0.00	3.50
1576	1608	0.597568	TTTGCCTTGCTTGGTGATCG	59.402	50.000	0.00	0.00	0.00	3.69
2003	2046	6.751888	GGTAATATTGCTTTGACATGTGGTTC	59.248	38.462	1.15	0.00	0.00	3.62
2218	2277	9.693739	ACAATAATATTTTGGTGGACATCACTA	57.306	29.630	0.00	0.00	45.38	2.74
2330	2396	8.885693	ATAGCACATCATAATACTCTACTCCA	57.114	34.615	0.00	0.00	0.00	3.86
2611	5392	8.050778	ACATAAATGTGTTCCAACGTCAATAT	57.949	30.769	0.00	0.00	40.03	1.28
2731	5519	9.099454	GTATTGTGGTCCTTTATAGACAGAAAG	57.901	37.037	0.00	0.00	35.89	2.62
2876	5667	6.443792	GGTTTGACACCTATAAGTTTGGTTG	58.556	40.000	0.00	0.00	43.29	3.77
3069	5867	7.148086	GGTTCATGGTAAATGCTTCAACATAGA	60.148	37.037	0.00	0.00	0.00	1.98
3249	6051	4.564199	CCATTTGTGGAGAGTCTGATGACA	60.564	45.833	0.00	0.00	45.20	3.58
3414	6216	3.963129	TGTCCATCAACATAACCCTTCC	58.037	45.455	0.00	0.00	0.00	3.46
3639	6526	7.660112	CACTAAACCATGGTACGGTGTATATA	58.340	38.462	20.12	0.00	36.67	0.86
3875	6767	0.390998	GGCTCAGAGGCTCACTTCAC	60.391	60.000	18.26	0.52	37.85	3.18
3930	6822	1.824852	GATTGGATGGCGAAAAACCCT	59.175	47.619	0.00	0.00	0.00	4.34
3931	6823	1.824852	AGATTGGATGGCGAAAAACCC	59.175	47.619	0.00	0.00	0.00	4.11
3939	6831	0.105964	TTCGGGTAGATTGGATGGCG	59.894	55.000	0.00	0.00	0.00	5.69
3982	6874	1.378514	GCCCATCATGGACCACGTT	60.379	57.895	4.75	0.00	40.96	3.99
3984	6876	2.304901	TACGCCCATCATGGACCACG	62.305	60.000	4.75	6.04	40.96	4.94
4000	6892	3.829886	AAAGCACCACAATCATGTACG	57.170	42.857	0.00	0.00	37.82	3.67
4015	6907	2.738587	TTACAGTGGACCCAAAAGCA	57.261	45.000	0.00	0.00	0.00	3.91
4021	6913	0.988832	GTCCCATTACAGTGGACCCA	59.011	55.000	0.00	0.00	42.21	4.51
4159	7051	1.915769	AGGCTGGCTTTCTCGGACT	60.916	57.895	0.00	0.00	0.00	3.85
4197	7089	2.944094	GCCTCGGTTGTTCCATAATGGT	60.944	50.000	0.00	0.00	39.03	3.55
4203	7095	0.394352	GGATGCCTCGGTTGTTCCAT	60.394	55.000	0.00	0.00	35.57	3.41
4206	7098	1.079405	TCGGATGCCTCGGTTGTTC	60.079	57.895	0.00	0.00	0.00	3.18
4209	7101	0.174845	TTAGTCGGATGCCTCGGTTG	59.825	55.000	0.00	0.00	0.00	3.77
4249	7141	2.276116	GCCTCTCTCCACCGTGACA	61.276	63.158	0.00	0.00	0.00	3.58
4255	7147	1.003233	GGTTGTGCCTCTCTCCACC	60.003	63.158	0.00	0.00	0.00	4.61
4266	7158	1.024271	TCAACTGAGCAAGGTTGTGC	58.976	50.000	12.80	0.00	45.28	4.57
4279	7172	8.542132	CACAAAAACAAAATGACCTATCAACTG	58.458	33.333	0.00	0.00	38.69	3.16
4282	7175	6.989169	CCCACAAAAACAAAATGACCTATCAA	59.011	34.615	0.00	0.00	38.69	2.57
4293	7186	4.887655	ACCAAAACACCCACAAAAACAAAA	59.112	33.333	0.00	0.00	0.00	2.44
4301	7194	2.239681	AAGGACCAAAACACCCACAA	57.760	45.000	0.00	0.00	0.00	3.33
4306	7199	6.156748	ACTTAATGAAAGGACCAAAACACC	57.843	37.500	0.00	0.00	39.73	4.16
4323	7216	9.597170	GAACTAGGAAATCTTAACCGACTTAAT	57.403	33.333	0.00	0.00	0.00	1.40
4343	7236	3.369756	TGCGGCGTAAAAGAATGAACTAG	59.630	43.478	9.37	0.00	0.00	2.57
4383	7276	1.871039	CGAAACGAAAGAGAGCCCAAA	59.129	47.619	0.00	0.00	0.00	3.28
4392	7285	4.186159	ACCAGAGAAAACGAAACGAAAGA	58.814	39.130	0.00	0.00	0.00	2.52
4397	7290	3.183775	CACCTACCAGAGAAAACGAAACG	59.816	47.826	0.00	0.00	0.00	3.60
4456	7350	2.111999	TTGGAGCTGCGCCTACAACT	62.112	55.000	22.83	0.00	30.84	3.16
4458	7352	1.026182	CATTGGAGCTGCGCCTACAA	61.026	55.000	22.83	12.86	39.82	2.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.