Multiple sequence alignment - TraesCS2D01G073900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G073900 chr2D 100.000 5452 0 0 1 5452 31518175 31512724 0.000000e+00 10069.0
1 TraesCS2D01G073900 chr2D 94.166 977 45 10 2520 3489 31478186 31477215 0.000000e+00 1478.0
2 TraesCS2D01G073900 chr2D 84.241 349 44 8 1 339 10658870 10658523 4.070000e-86 329.0
3 TraesCS2D01G073900 chr2D 92.398 171 9 4 1 169 651718658 651718490 1.960000e-59 241.0
4 TraesCS2D01G073900 chr2D 91.124 169 12 3 1 169 628982040 628981875 5.490000e-55 226.0
5 TraesCS2D01G073900 chr2D 95.192 104 4 1 4649 4751 31477157 31477054 4.370000e-36 163.0
6 TraesCS2D01G073900 chr2A 90.427 2998 213 39 1741 4714 33339619 33336672 0.000000e+00 3879.0
7 TraesCS2D01G073900 chr2A 87.513 929 71 21 819 1722 33340589 33339681 0.000000e+00 1031.0
8 TraesCS2D01G073900 chr2A 94.457 433 18 3 5020 5452 33336133 33335707 0.000000e+00 662.0
9 TraesCS2D01G073900 chr2A 97.561 123 3 0 2074 2196 33321785 33321907 1.540000e-50 211.0
10 TraesCS2D01G073900 chr2A 87.730 163 19 1 177 339 142680904 142681065 7.210000e-44 189.0
11 TraesCS2D01G073900 chr2A 84.571 175 21 3 175 344 241457816 241457643 9.390000e-38 169.0
12 TraesCS2D01G073900 chr2B 93.564 1818 109 4 3074 4885 51083480 51085295 0.000000e+00 2702.0
13 TraesCS2D01G073900 chr2B 90.171 1231 98 13 1797 3012 51082254 51083476 0.000000e+00 1581.0
14 TraesCS2D01G073900 chr2B 86.563 1094 101 26 1580 2656 52137243 52138307 0.000000e+00 1164.0
15 TraesCS2D01G073900 chr2B 89.574 892 69 4 3093 3978 52148782 52149655 0.000000e+00 1110.0
16 TraesCS2D01G073900 chr2B 85.979 863 56 39 716 1541 51080882 51081716 0.000000e+00 863.0
17 TraesCS2D01G073900 chr2B 89.596 644 48 3 3257 3899 52530475 52529850 0.000000e+00 800.0
18 TraesCS2D01G073900 chr2B 91.618 513 42 1 3963 4475 52528252 52527741 0.000000e+00 708.0
19 TraesCS2D01G073900 chr2B 90.196 510 41 2 3963 4472 52150290 52150790 0.000000e+00 656.0
20 TraesCS2D01G073900 chr2B 90.835 491 21 5 4962 5452 51085497 51085963 2.140000e-178 636.0
21 TraesCS2D01G073900 chr2B 90.237 379 28 2 5020 5398 52526708 52526339 2.280000e-133 486.0
22 TraesCS2D01G073900 chr2B 84.855 449 56 4 2663 3103 52143258 52143702 5.010000e-120 442.0
23 TraesCS2D01G073900 chr2B 83.143 350 46 10 1 339 56502382 56502729 1.910000e-79 307.0
24 TraesCS2D01G073900 chr2B 81.919 271 41 7 66 333 18936865 18937130 7.110000e-54 222.0
25 TraesCS2D01G073900 chr2B 89.205 176 18 1 727 901 51726910 51726735 9.190000e-53 219.0
26 TraesCS2D01G073900 chr2B 97.619 126 3 0 2074 2199 51136975 51136850 3.310000e-52 217.0
27 TraesCS2D01G073900 chr2B 88.172 186 13 4 4520 4696 52182399 52182584 4.280000e-51 213.0
28 TraesCS2D01G073900 chr2B 87.097 186 13 6 4530 4714 52527536 52527361 3.330000e-47 200.0
29 TraesCS2D01G073900 chr2B 85.629 167 22 2 176 340 756107886 756107720 2.020000e-39 174.0
30 TraesCS2D01G073900 chr2B 94.495 109 6 0 354 462 51079090 51079198 9.390000e-38 169.0
31 TraesCS2D01G073900 chr2B 91.566 83 7 0 3896 3978 52528992 52528910 1.240000e-21 115.0
32 TraesCS2D01G073900 chr2B 97.297 37 1 0 4914 4950 51085292 51085328 4.560000e-06 63.9
33 TraesCS2D01G073900 chrUn 87.225 908 56 15 1114 1971 17256102 17256999 0.000000e+00 979.0
34 TraesCS2D01G073900 chrUn 89.323 665 47 5 4240 4885 17257003 17257662 0.000000e+00 813.0
35 TraesCS2D01G073900 chrUn 92.884 534 34 4 3974 4505 17269804 17270335 0.000000e+00 773.0
36 TraesCS2D01G073900 chrUn 89.796 539 24 8 4914 5452 17257659 17258166 0.000000e+00 662.0
37 TraesCS2D01G073900 chrUn 83.621 464 46 15 572 1017 17255587 17256038 5.080000e-110 409.0
38 TraesCS2D01G073900 chrUn 92.949 156 11 0 4507 4662 17270418 17270573 1.530000e-55 228.0
39 TraesCS2D01G073900 chrUn 81.498 227 25 8 354 564 17255303 17255528 2.610000e-38 171.0
40 TraesCS2D01G073900 chr4B 87.744 359 24 11 1 339 555936590 555936232 8.510000e-108 401.0
41 TraesCS2D01G073900 chr5B 82.997 347 44 11 1 339 643407297 643407636 3.190000e-77 300.0
42 TraesCS2D01G073900 chr5B 80.663 362 48 12 1 340 309684622 309684983 1.510000e-65 261.0
43 TraesCS2D01G073900 chr1A 80.094 427 61 8 1300 1722 82130614 82130208 4.130000e-76 296.0
44 TraesCS2D01G073900 chr3D 81.102 381 31 16 1 340 604110697 604110317 3.240000e-67 267.0
45 TraesCS2D01G073900 chr3D 91.279 172 13 2 1 170 152404642 152404471 3.280000e-57 233.0
46 TraesCS2D01G073900 chr3D 91.071 168 11 4 1 168 382949529 382949692 1.980000e-54 224.0
47 TraesCS2D01G073900 chr7D 79.781 366 48 10 1 340 16264567 16264932 5.460000e-60 243.0
48 TraesCS2D01G073900 chr7D 90.588 170 14 2 1 170 626573038 626572871 1.980000e-54 224.0
49 TraesCS2D01G073900 chr5D 90.000 170 12 5 1 170 15358976 15359140 1.190000e-51 215.0
50 TraesCS2D01G073900 chr5D 88.889 171 19 0 1 171 62808830 62809000 1.540000e-50 211.0
51 TraesCS2D01G073900 chr5D 83.889 180 21 2 172 343 40783184 40783363 1.210000e-36 165.0
52 TraesCS2D01G073900 chr6B 89.474 171 14 4 1 169 52200590 52200422 4.280000e-51 213.0
53 TraesCS2D01G073900 chr7B 84.211 209 21 8 144 342 718450241 718450035 5.570000e-45 193.0
54 TraesCS2D01G073900 chr7B 85.795 176 17 6 172 340 635099952 635100126 4.340000e-41 180.0
55 TraesCS2D01G073900 chr4A 85.143 175 20 3 172 340 718533140 718532966 2.020000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G073900 chr2D 31512724 31518175 5451 True 10069.000000 10069 100.000000 1 5452 1 chr2D.!!$R2 5451
1 TraesCS2D01G073900 chr2D 31477054 31478186 1132 True 820.500000 1478 94.679000 2520 4751 2 chr2D.!!$R5 2231
2 TraesCS2D01G073900 chr2A 33335707 33340589 4882 True 1857.333333 3879 90.799000 819 5452 3 chr2A.!!$R2 4633
3 TraesCS2D01G073900 chr2B 52137243 52138307 1064 False 1164.000000 1164 86.563000 1580 2656 1 chr2B.!!$F2 1076
4 TraesCS2D01G073900 chr2B 51079090 51085963 6873 False 1002.483333 2702 92.056833 354 5452 6 chr2B.!!$F6 5098
5 TraesCS2D01G073900 chr2B 52148782 52150790 2008 False 883.000000 1110 89.885000 3093 4472 2 chr2B.!!$F7 1379
6 TraesCS2D01G073900 chr2B 52526339 52530475 4136 True 461.800000 800 90.022800 3257 5398 5 chr2B.!!$R4 2141
7 TraesCS2D01G073900 chrUn 17255303 17258166 2863 False 606.800000 979 86.292600 354 5452 5 chrUn.!!$F1 5098
8 TraesCS2D01G073900 chrUn 17269804 17270573 769 False 500.500000 773 92.916500 3974 4662 2 chrUn.!!$F2 688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 329 0.036105 CCGGTACTAAAGGCCCGTTT 60.036 55.000 0.00 0.0 38.79 3.60 F
907 2346 0.108585 TCAGCCCAGTTCAACACTCC 59.891 55.000 0.00 0.0 30.92 3.85 F
908 2347 0.890996 CAGCCCAGTTCAACACTCCC 60.891 60.000 0.00 0.0 30.92 4.30 F
909 2348 1.062488 AGCCCAGTTCAACACTCCCT 61.062 55.000 0.00 0.0 30.92 4.20 F
1389 2867 1.079405 ATACCAAGGCGTCACCGTG 60.079 57.895 0.00 0.0 46.55 4.94 F
2736 4629 1.087501 GGAGCGCTTTAGGTTCCAAG 58.912 55.000 13.26 0.0 0.00 3.61 F
4016 7456 0.179034 GGCCCTCTATCCTTGCACTG 60.179 60.000 0.00 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1332 2810 0.179076 CGTAGTGGAGCATGCATCCA 60.179 55.000 25.68 25.68 44.63 3.41 R
2712 4605 1.032114 AACCTAAAGCGCTCCCATGC 61.032 55.000 12.06 0.00 0.00 4.06 R
2736 4629 3.418684 TTTCTGGTTGCCTCTACTTCC 57.581 47.619 0.00 0.00 0.00 3.46 R
2905 4798 3.902881 ACATCCAGAAGAACTGCCTAG 57.097 47.619 0.00 0.00 44.52 3.02 R
3386 5288 0.390472 GGGAACTCACTGGAAGAGCG 60.390 60.000 0.00 0.00 37.43 5.03 R
4334 7775 0.171903 CGATTGCTTTGCCCTTCTGG 59.828 55.000 0.00 0.00 37.09 3.86 R
5349 9566 0.316278 CTCTGACGATGAGTACGGCG 60.316 60.000 4.80 4.80 42.10 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.304911 CTGGAGTAGTGAGAGGATGGA 57.695 52.381 0.00 0.00 0.00 3.41
21 22 3.843422 CTGGAGTAGTGAGAGGATGGAT 58.157 50.000 0.00 0.00 0.00 3.41
22 23 3.570540 TGGAGTAGTGAGAGGATGGATG 58.429 50.000 0.00 0.00 0.00 3.51
23 24 3.205282 TGGAGTAGTGAGAGGATGGATGA 59.795 47.826 0.00 0.00 0.00 2.92
24 25 3.572255 GGAGTAGTGAGAGGATGGATGAC 59.428 52.174 0.00 0.00 0.00 3.06
25 26 3.571590 AGTAGTGAGAGGATGGATGACC 58.428 50.000 0.00 0.00 0.00 4.02
26 27 1.407936 AGTGAGAGGATGGATGACCG 58.592 55.000 0.00 0.00 39.42 4.79
27 28 0.390860 GTGAGAGGATGGATGACCGG 59.609 60.000 0.00 0.00 39.42 5.28
28 29 1.369321 GAGAGGATGGATGACCGGC 59.631 63.158 0.00 0.00 39.42 6.13
29 30 2.105806 GAGAGGATGGATGACCGGCC 62.106 65.000 0.00 0.00 39.42 6.13
30 31 3.521529 GAGGATGGATGACCGGCCG 62.522 68.421 21.04 21.04 39.42 6.13
31 32 4.626081 GGATGGATGACCGGCCGG 62.626 72.222 42.17 42.17 39.42 6.13
32 33 4.626081 GATGGATGACCGGCCGGG 62.626 72.222 44.99 28.13 43.62 5.73
35 36 4.547367 GGATGACCGGCCGGGAAG 62.547 72.222 44.99 23.03 39.97 3.46
36 37 3.782443 GATGACCGGCCGGGAAGT 61.782 66.667 44.99 28.53 39.97 3.01
37 38 3.325201 GATGACCGGCCGGGAAGTT 62.325 63.158 44.99 26.86 39.97 2.66
38 39 1.963464 GATGACCGGCCGGGAAGTTA 61.963 60.000 44.99 23.60 39.97 2.24
39 40 1.968050 ATGACCGGCCGGGAAGTTAG 61.968 60.000 44.99 20.28 39.97 2.34
40 41 2.284112 ACCGGCCGGGAAGTTAGA 60.284 61.111 44.99 0.00 39.97 2.10
41 42 2.186125 CCGGCCGGGAAGTTAGAC 59.814 66.667 37.42 0.00 38.47 2.59
42 43 2.202703 CGGCCGGGAAGTTAGACG 60.203 66.667 20.10 0.00 0.00 4.18
43 44 2.703798 CGGCCGGGAAGTTAGACGA 61.704 63.158 20.10 0.00 0.00 4.20
44 45 1.821258 GGCCGGGAAGTTAGACGAT 59.179 57.895 2.18 0.00 0.00 3.73
45 46 0.177373 GGCCGGGAAGTTAGACGATT 59.823 55.000 2.18 0.00 0.00 3.34
46 47 1.406477 GGCCGGGAAGTTAGACGATTT 60.406 52.381 2.18 0.00 0.00 2.17
47 48 1.664151 GCCGGGAAGTTAGACGATTTG 59.336 52.381 2.18 0.00 0.00 2.32
48 49 2.277084 CCGGGAAGTTAGACGATTTGG 58.723 52.381 0.00 0.00 0.00 3.28
49 50 2.093869 CCGGGAAGTTAGACGATTTGGA 60.094 50.000 0.00 0.00 0.00 3.53
50 51 3.592059 CGGGAAGTTAGACGATTTGGAA 58.408 45.455 0.00 0.00 0.00 3.53
51 52 4.189231 CGGGAAGTTAGACGATTTGGAAT 58.811 43.478 0.00 0.00 0.00 3.01
52 53 4.034048 CGGGAAGTTAGACGATTTGGAATG 59.966 45.833 0.00 0.00 0.00 2.67
53 54 5.183228 GGGAAGTTAGACGATTTGGAATGA 58.817 41.667 0.00 0.00 0.00 2.57
54 55 5.294552 GGGAAGTTAGACGATTTGGAATGAG 59.705 44.000 0.00 0.00 0.00 2.90
55 56 5.875359 GGAAGTTAGACGATTTGGAATGAGT 59.125 40.000 0.00 0.00 0.00 3.41
56 57 6.183360 GGAAGTTAGACGATTTGGAATGAGTG 60.183 42.308 0.00 0.00 0.00 3.51
57 58 6.037786 AGTTAGACGATTTGGAATGAGTGA 57.962 37.500 0.00 0.00 0.00 3.41
58 59 6.644347 AGTTAGACGATTTGGAATGAGTGAT 58.356 36.000 0.00 0.00 0.00 3.06
59 60 6.758886 AGTTAGACGATTTGGAATGAGTGATC 59.241 38.462 0.00 0.00 0.00 2.92
60 61 4.446371 AGACGATTTGGAATGAGTGATCC 58.554 43.478 0.00 0.00 36.21 3.36
61 62 4.080919 AGACGATTTGGAATGAGTGATCCA 60.081 41.667 0.00 0.00 43.84 3.41
62 63 3.941483 ACGATTTGGAATGAGTGATCCAC 59.059 43.478 0.00 0.00 45.14 4.02
63 64 3.940852 CGATTTGGAATGAGTGATCCACA 59.059 43.478 0.00 0.00 45.14 4.17
64 65 4.201851 CGATTTGGAATGAGTGATCCACAC 60.202 45.833 0.00 0.00 45.14 3.82
77 78 2.768253 TCCACACTGGAGCAGTTATG 57.232 50.000 0.00 0.00 42.59 1.90
78 79 2.256306 TCCACACTGGAGCAGTTATGA 58.744 47.619 0.00 0.00 42.59 2.15
79 80 2.234661 TCCACACTGGAGCAGTTATGAG 59.765 50.000 0.00 0.00 42.59 2.90
80 81 2.625737 CACACTGGAGCAGTTATGAGG 58.374 52.381 0.00 0.00 42.59 3.86
81 82 1.556911 ACACTGGAGCAGTTATGAGGG 59.443 52.381 0.00 0.00 42.59 4.30
82 83 1.134280 CACTGGAGCAGTTATGAGGGG 60.134 57.143 0.00 0.00 42.59 4.79
83 84 1.207791 CTGGAGCAGTTATGAGGGGT 58.792 55.000 0.00 0.00 0.00 4.95
84 85 0.911769 TGGAGCAGTTATGAGGGGTG 59.088 55.000 0.00 0.00 0.00 4.61
85 86 1.204146 GGAGCAGTTATGAGGGGTGA 58.796 55.000 0.00 0.00 0.00 4.02
86 87 1.771255 GGAGCAGTTATGAGGGGTGAT 59.229 52.381 0.00 0.00 0.00 3.06
87 88 2.173569 GGAGCAGTTATGAGGGGTGATT 59.826 50.000 0.00 0.00 0.00 2.57
88 89 3.391296 GGAGCAGTTATGAGGGGTGATTA 59.609 47.826 0.00 0.00 0.00 1.75
89 90 4.503991 GGAGCAGTTATGAGGGGTGATTAG 60.504 50.000 0.00 0.00 0.00 1.73
90 91 4.298626 AGCAGTTATGAGGGGTGATTAGA 58.701 43.478 0.00 0.00 0.00 2.10
91 92 4.346418 AGCAGTTATGAGGGGTGATTAGAG 59.654 45.833 0.00 0.00 0.00 2.43
92 93 4.345257 GCAGTTATGAGGGGTGATTAGAGA 59.655 45.833 0.00 0.00 0.00 3.10
93 94 5.012561 GCAGTTATGAGGGGTGATTAGAGAT 59.987 44.000 0.00 0.00 0.00 2.75
94 95 6.465035 GCAGTTATGAGGGGTGATTAGAGATT 60.465 42.308 0.00 0.00 0.00 2.40
95 96 7.256332 GCAGTTATGAGGGGTGATTAGAGATTA 60.256 40.741 0.00 0.00 0.00 1.75
96 97 8.651389 CAGTTATGAGGGGTGATTAGAGATTAA 58.349 37.037 0.00 0.00 0.00 1.40
97 98 9.225682 AGTTATGAGGGGTGATTAGAGATTAAA 57.774 33.333 0.00 0.00 0.00 1.52
100 101 6.759272 TGAGGGGTGATTAGAGATTAAATCG 58.241 40.000 0.00 0.00 35.32 3.34
101 102 6.326583 TGAGGGGTGATTAGAGATTAAATCGT 59.673 38.462 0.00 0.00 35.32 3.73
102 103 6.760291 AGGGGTGATTAGAGATTAAATCGTC 58.240 40.000 0.00 0.00 35.32 4.20
103 104 6.326583 AGGGGTGATTAGAGATTAAATCGTCA 59.673 38.462 0.00 0.00 35.32 4.35
104 105 6.990349 GGGGTGATTAGAGATTAAATCGTCAA 59.010 38.462 0.00 0.00 35.32 3.18
105 106 7.497909 GGGGTGATTAGAGATTAAATCGTCAAA 59.502 37.037 0.00 0.00 35.32 2.69
106 107 9.057089 GGGTGATTAGAGATTAAATCGTCAAAT 57.943 33.333 0.00 0.00 35.32 2.32
234 235 4.629523 GGCCCCGGTTCGTGTTGA 62.630 66.667 0.00 0.00 0.00 3.18
235 236 2.592287 GCCCCGGTTCGTGTTGAA 60.592 61.111 0.00 0.00 0.00 2.69
242 243 4.442018 TTCGTGTTGAACCGGGAC 57.558 55.556 6.32 0.00 0.00 4.46
243 244 1.824658 TTCGTGTTGAACCGGGACT 59.175 52.632 6.32 0.00 0.00 3.85
244 245 1.039068 TTCGTGTTGAACCGGGACTA 58.961 50.000 6.32 0.00 0.00 2.59
245 246 0.599558 TCGTGTTGAACCGGGACTAG 59.400 55.000 6.32 0.00 0.00 2.57
246 247 0.389426 CGTGTTGAACCGGGACTAGG 60.389 60.000 6.32 0.00 0.00 3.02
247 248 0.036671 GTGTTGAACCGGGACTAGGG 60.037 60.000 6.32 0.00 0.00 3.53
248 249 1.196104 TGTTGAACCGGGACTAGGGG 61.196 60.000 6.32 0.00 0.00 4.79
249 250 1.614226 TTGAACCGGGACTAGGGGG 60.614 63.158 6.32 0.00 0.00 5.40
272 273 5.741962 GAGTTTAGTCTCCACCCTTTAGT 57.258 43.478 0.00 0.00 0.00 2.24
273 274 5.480205 GAGTTTAGTCTCCACCCTTTAGTG 58.520 45.833 0.00 0.00 37.51 2.74
274 275 3.975168 TTAGTCTCCACCCTTTAGTGC 57.025 47.619 0.00 0.00 36.38 4.40
275 276 0.984995 AGTCTCCACCCTTTAGTGCC 59.015 55.000 0.00 0.00 36.38 5.01
276 277 0.391263 GTCTCCACCCTTTAGTGCCG 60.391 60.000 0.00 0.00 36.38 5.69
277 278 1.745489 CTCCACCCTTTAGTGCCGC 60.745 63.158 0.00 0.00 36.38 6.53
278 279 2.185310 CTCCACCCTTTAGTGCCGCT 62.185 60.000 0.00 0.00 36.38 5.52
279 280 1.303317 CCACCCTTTAGTGCCGCTT 60.303 57.895 0.00 0.00 36.38 4.68
280 281 0.893727 CCACCCTTTAGTGCCGCTTT 60.894 55.000 0.00 0.00 36.38 3.51
281 282 0.521735 CACCCTTTAGTGCCGCTTTC 59.478 55.000 0.00 0.00 0.00 2.62
282 283 0.109723 ACCCTTTAGTGCCGCTTTCA 59.890 50.000 0.00 0.00 0.00 2.69
283 284 0.804989 CCCTTTAGTGCCGCTTTCAG 59.195 55.000 0.00 0.00 0.00 3.02
284 285 1.610624 CCCTTTAGTGCCGCTTTCAGA 60.611 52.381 0.00 0.00 0.00 3.27
285 286 2.151202 CCTTTAGTGCCGCTTTCAGAA 58.849 47.619 0.00 0.00 0.00 3.02
286 287 2.095718 CCTTTAGTGCCGCTTTCAGAAC 60.096 50.000 0.00 0.00 0.00 3.01
287 288 1.519408 TTAGTGCCGCTTTCAGAACC 58.481 50.000 0.00 0.00 0.00 3.62
288 289 0.669318 TAGTGCCGCTTTCAGAACCG 60.669 55.000 0.00 0.00 0.00 4.44
289 290 2.668212 TGCCGCTTTCAGAACCGG 60.668 61.111 14.43 14.43 43.38 5.28
291 292 2.668212 CCGCTTTCAGAACCGGCA 60.668 61.111 0.00 0.00 33.77 5.69
292 293 2.556287 CGCTTTCAGAACCGGCAC 59.444 61.111 0.00 0.00 0.00 5.01
293 294 1.961277 CGCTTTCAGAACCGGCACT 60.961 57.895 0.00 0.00 0.00 4.40
294 295 0.669318 CGCTTTCAGAACCGGCACTA 60.669 55.000 0.00 0.00 0.00 2.74
295 296 1.519408 GCTTTCAGAACCGGCACTAA 58.481 50.000 0.00 0.00 0.00 2.24
296 297 1.877443 GCTTTCAGAACCGGCACTAAA 59.123 47.619 0.00 0.00 0.00 1.85
297 298 2.095718 GCTTTCAGAACCGGCACTAAAG 60.096 50.000 0.00 6.94 0.00 1.85
298 299 2.178912 TTCAGAACCGGCACTAAAGG 57.821 50.000 0.00 0.00 0.00 3.11
299 300 0.323629 TCAGAACCGGCACTAAAGGG 59.676 55.000 0.00 0.00 0.00 3.95
300 301 1.002502 AGAACCGGCACTAAAGGGC 60.003 57.895 0.00 0.00 0.00 5.19
301 302 2.035155 AACCGGCACTAAAGGGCC 59.965 61.111 13.51 13.51 46.80 5.80
306 307 2.776659 GGCACTAAAGGGCCTTACG 58.223 57.895 21.25 15.66 46.74 3.18
307 308 0.251073 GGCACTAAAGGGCCTTACGA 59.749 55.000 21.25 7.25 46.74 3.43
308 309 1.339342 GGCACTAAAGGGCCTTACGAA 60.339 52.381 21.25 4.81 46.74 3.85
309 310 1.736126 GCACTAAAGGGCCTTACGAAC 59.264 52.381 21.25 5.99 0.00 3.95
310 311 2.353323 CACTAAAGGGCCTTACGAACC 58.647 52.381 21.25 0.00 0.00 3.62
311 312 1.066645 ACTAAAGGGCCTTACGAACCG 60.067 52.381 21.25 5.60 0.00 4.44
312 313 0.249955 TAAAGGGCCTTACGAACCGG 59.750 55.000 21.25 0.00 0.00 5.28
313 314 1.771783 AAAGGGCCTTACGAACCGGT 61.772 55.000 21.25 0.00 0.00 5.28
314 315 0.904394 AAGGGCCTTACGAACCGGTA 60.904 55.000 19.37 0.00 0.00 4.02
315 316 1.153568 GGGCCTTACGAACCGGTAC 60.154 63.158 8.00 0.00 0.00 3.34
316 317 1.607801 GGGCCTTACGAACCGGTACT 61.608 60.000 8.00 0.00 0.00 2.73
317 318 1.102978 GGCCTTACGAACCGGTACTA 58.897 55.000 8.00 0.00 0.00 1.82
318 319 1.476488 GGCCTTACGAACCGGTACTAA 59.524 52.381 8.00 2.82 0.00 2.24
319 320 2.094234 GGCCTTACGAACCGGTACTAAA 60.094 50.000 8.00 0.00 0.00 1.85
320 321 3.182182 GCCTTACGAACCGGTACTAAAG 58.818 50.000 8.00 10.02 0.00 1.85
321 322 3.774066 CCTTACGAACCGGTACTAAAGG 58.226 50.000 8.00 15.39 0.00 3.11
322 323 2.939460 TACGAACCGGTACTAAAGGC 57.061 50.000 8.00 0.00 0.00 4.35
323 324 0.247460 ACGAACCGGTACTAAAGGCC 59.753 55.000 8.00 0.00 0.00 5.19
324 325 0.460811 CGAACCGGTACTAAAGGCCC 60.461 60.000 8.00 0.00 0.00 5.80
325 326 0.460811 GAACCGGTACTAAAGGCCCG 60.461 60.000 8.00 0.00 40.12 6.13
326 327 1.194121 AACCGGTACTAAAGGCCCGT 61.194 55.000 8.00 0.00 38.79 5.28
327 328 1.194121 ACCGGTACTAAAGGCCCGTT 61.194 55.000 4.49 0.00 38.79 4.44
328 329 0.036105 CCGGTACTAAAGGCCCGTTT 60.036 55.000 0.00 0.00 38.79 3.60
329 330 1.611410 CCGGTACTAAAGGCCCGTTTT 60.611 52.381 0.00 0.00 38.79 2.43
330 331 1.733912 CGGTACTAAAGGCCCGTTTTC 59.266 52.381 0.00 0.00 35.78 2.29
331 332 2.613725 CGGTACTAAAGGCCCGTTTTCT 60.614 50.000 0.00 0.00 35.78 2.52
332 333 3.368323 CGGTACTAAAGGCCCGTTTTCTA 60.368 47.826 0.00 0.00 35.78 2.10
333 334 4.186926 GGTACTAAAGGCCCGTTTTCTAG 58.813 47.826 0.00 0.00 0.00 2.43
334 335 4.323028 GGTACTAAAGGCCCGTTTTCTAGT 60.323 45.833 0.00 0.00 0.00 2.57
335 336 5.105351 GGTACTAAAGGCCCGTTTTCTAGTA 60.105 44.000 0.00 0.00 0.00 1.82
336 337 5.082251 ACTAAAGGCCCGTTTTCTAGTAG 57.918 43.478 0.00 0.00 0.00 2.57
337 338 4.529769 ACTAAAGGCCCGTTTTCTAGTAGT 59.470 41.667 0.00 0.00 0.00 2.73
338 339 3.329929 AAGGCCCGTTTTCTAGTAGTG 57.670 47.619 0.00 0.00 0.00 2.74
339 340 1.553704 AGGCCCGTTTTCTAGTAGTGG 59.446 52.381 0.00 0.00 0.00 4.00
340 341 1.366679 GCCCGTTTTCTAGTAGTGGC 58.633 55.000 0.00 0.00 0.00 5.01
341 342 2.010544 GCCCGTTTTCTAGTAGTGGCC 61.011 57.143 0.00 0.00 0.00 5.36
342 343 1.553704 CCCGTTTTCTAGTAGTGGCCT 59.446 52.381 3.32 0.00 0.00 5.19
343 344 2.027469 CCCGTTTTCTAGTAGTGGCCTT 60.027 50.000 3.32 0.00 0.00 4.35
344 345 3.196254 CCCGTTTTCTAGTAGTGGCCTTA 59.804 47.826 3.32 0.00 0.00 2.69
345 346 4.179298 CCGTTTTCTAGTAGTGGCCTTAC 58.821 47.826 3.32 7.11 0.00 2.34
346 347 3.855950 CGTTTTCTAGTAGTGGCCTTACG 59.144 47.826 3.32 0.00 0.00 3.18
347 348 4.179298 GTTTTCTAGTAGTGGCCTTACGG 58.821 47.826 3.32 6.08 0.00 4.02
348 349 2.814805 TCTAGTAGTGGCCTTACGGT 57.185 50.000 3.32 0.00 0.00 4.83
349 350 3.931907 TCTAGTAGTGGCCTTACGGTA 57.068 47.619 3.32 0.00 0.00 4.02
350 351 4.443978 TCTAGTAGTGGCCTTACGGTAT 57.556 45.455 3.32 0.00 0.00 2.73
351 352 4.796606 TCTAGTAGTGGCCTTACGGTATT 58.203 43.478 3.32 0.00 0.00 1.89
352 353 5.940617 TCTAGTAGTGGCCTTACGGTATTA 58.059 41.667 3.32 0.00 0.00 0.98
361 362 6.748658 GTGGCCTTACGGTATTAAAAATTCAC 59.251 38.462 3.32 0.00 0.00 3.18
441 442 9.356433 TCATTTGCATTTGTATTGTGTATCTTG 57.644 29.630 0.00 0.00 0.00 3.02
451 452 2.627945 TGTGTATCTTGGTCGGAATGC 58.372 47.619 0.00 0.00 0.00 3.56
480 513 1.335872 GCCAATCTTTGTTCGTGTGGG 60.336 52.381 0.00 0.00 0.00 4.61
487 520 1.670791 TTGTTCGTGTGGGTCTTTCC 58.329 50.000 0.00 0.00 0.00 3.13
491 524 0.245539 TCGTGTGGGTCTTTCCGATC 59.754 55.000 0.00 0.00 37.00 3.69
510 543 6.051717 CCGATCTACATCTCTTTTCATTGGT 58.948 40.000 0.00 0.00 0.00 3.67
513 546 7.254252 CGATCTACATCTCTTTTCATTGGTGAC 60.254 40.741 0.00 0.00 33.11 3.67
527 560 5.640357 TCATTGGTGACGGTTGTTATTCTAC 59.360 40.000 0.00 0.00 0.00 2.59
537 570 6.708949 ACGGTTGTTATTCTACTGTGTTGATT 59.291 34.615 0.00 0.00 39.23 2.57
538 571 7.227910 ACGGTTGTTATTCTACTGTGTTGATTT 59.772 33.333 0.00 0.00 39.23 2.17
540 573 9.180678 GGTTGTTATTCTACTGTGTTGATTTTG 57.819 33.333 0.00 0.00 0.00 2.44
545 578 7.807977 ATTCTACTGTGTTGATTTTGTGAGT 57.192 32.000 0.00 0.00 0.00 3.41
556 589 8.655970 TGTTGATTTTGTGAGTCATCTATTACG 58.344 33.333 0.00 0.00 0.00 3.18
564 597 7.941919 TGTGAGTCATCTATTACGATAAGCTT 58.058 34.615 3.48 3.48 0.00 3.74
569 602 8.688151 AGTCATCTATTACGATAAGCTTATCCC 58.312 37.037 31.40 15.59 36.95 3.85
570 603 8.688151 GTCATCTATTACGATAAGCTTATCCCT 58.312 37.037 31.40 22.06 36.95 4.20
591 675 2.081212 GTGACGTGTCTTCGGCTCG 61.081 63.158 0.00 0.00 39.83 5.03
599 683 1.610038 TGTCTTCGGCTCGTTTCAGTA 59.390 47.619 0.00 0.00 0.00 2.74
608 692 4.387862 CGGCTCGTTTCAGTATTTGTAGTT 59.612 41.667 0.00 0.00 0.00 2.24
618 706 5.243507 TCAGTATTTGTAGTTGTCGGTGGTA 59.756 40.000 0.00 0.00 0.00 3.25
621 709 7.221452 CAGTATTTGTAGTTGTCGGTGGTATAC 59.779 40.741 0.00 0.00 0.00 1.47
661 2079 9.546428 TTATCGATGATGTTTCTTGTATGTGAT 57.454 29.630 8.54 0.00 0.00 3.06
665 2083 7.010830 CGATGATGTTTCTTGTATGTGATGACT 59.989 37.037 0.00 0.00 0.00 3.41
672 2090 8.725148 GTTTCTTGTATGTGATGACTGAAGATT 58.275 33.333 0.00 0.00 0.00 2.40
673 2091 9.942850 TTTCTTGTATGTGATGACTGAAGATTA 57.057 29.630 0.00 0.00 0.00 1.75
674 2092 9.942850 TTCTTGTATGTGATGACTGAAGATTAA 57.057 29.630 0.00 0.00 0.00 1.40
675 2093 9.942850 TCTTGTATGTGATGACTGAAGATTAAA 57.057 29.630 0.00 0.00 0.00 1.52
713 2131 6.906157 TTCTTCAAGAAAATGATGCTTCCT 57.094 33.333 0.00 0.00 29.99 3.36
715 2133 7.294017 TCTTCAAGAAAATGATGCTTCCTTT 57.706 32.000 0.00 0.00 0.00 3.11
719 2138 7.499292 TCAAGAAAATGATGCTTCCTTTTCAA 58.501 30.769 28.37 18.12 43.38 2.69
721 2155 8.614346 CAAGAAAATGATGCTTCCTTTTCAAAA 58.386 29.630 28.37 1.02 43.38 2.44
809 2243 1.736645 CACGATCGCGGTGGACTTT 60.737 57.895 16.60 0.00 43.17 2.66
813 2247 1.931172 CGATCGCGGTGGACTTTTTAT 59.069 47.619 6.13 0.00 0.00 1.40
814 2248 3.117794 CGATCGCGGTGGACTTTTTATA 58.882 45.455 6.13 0.00 0.00 0.98
815 2249 3.552699 CGATCGCGGTGGACTTTTTATAA 59.447 43.478 6.13 0.00 0.00 0.98
816 2250 4.210537 CGATCGCGGTGGACTTTTTATAAT 59.789 41.667 6.13 0.00 0.00 1.28
817 2251 4.868450 TCGCGGTGGACTTTTTATAATG 57.132 40.909 6.13 0.00 0.00 1.90
818 2252 3.623960 TCGCGGTGGACTTTTTATAATGG 59.376 43.478 6.13 0.00 0.00 3.16
819 2253 3.375922 CGCGGTGGACTTTTTATAATGGT 59.624 43.478 0.00 0.00 0.00 3.55
820 2254 4.495184 CGCGGTGGACTTTTTATAATGGTC 60.495 45.833 0.00 0.00 0.00 4.02
821 2255 4.638865 GCGGTGGACTTTTTATAATGGTCT 59.361 41.667 10.59 0.00 0.00 3.85
822 2256 5.220796 GCGGTGGACTTTTTATAATGGTCTC 60.221 44.000 10.59 6.58 0.00 3.36
824 2258 5.296035 GGTGGACTTTTTATAATGGTCTCCG 59.704 44.000 10.59 0.00 0.00 4.63
825 2259 5.878669 GTGGACTTTTTATAATGGTCTCCGT 59.121 40.000 10.59 0.00 0.00 4.69
906 2345 1.808945 CATCAGCCCAGTTCAACACTC 59.191 52.381 0.00 0.00 30.92 3.51
907 2346 0.108585 TCAGCCCAGTTCAACACTCC 59.891 55.000 0.00 0.00 30.92 3.85
908 2347 0.890996 CAGCCCAGTTCAACACTCCC 60.891 60.000 0.00 0.00 30.92 4.30
909 2348 1.062488 AGCCCAGTTCAACACTCCCT 61.062 55.000 0.00 0.00 30.92 4.20
926 2365 2.853542 TCCCTTGACCAGCTGCCA 60.854 61.111 8.66 5.50 0.00 4.92
1026 2489 4.760047 CCCACTCCCGCTTCCACG 62.760 72.222 0.00 0.00 0.00 4.94
1386 2864 1.520787 CGGATACCAAGGCGTCACC 60.521 63.158 0.00 0.00 39.61 4.02
1389 2867 1.079405 ATACCAAGGCGTCACCGTG 60.079 57.895 0.00 0.00 46.55 4.94
1414 2895 4.154918 GCTCTCTCACATTTTGGTCGATTT 59.845 41.667 0.00 0.00 0.00 2.17
1421 2902 6.800543 TCACATTTTGGTCGATTTTCAGAAA 58.199 32.000 0.00 0.00 0.00 2.52
1453 2934 1.312815 GTGCTCTGCCAAACTCTGTT 58.687 50.000 0.00 0.00 0.00 3.16
1454 2935 1.678101 GTGCTCTGCCAAACTCTGTTT 59.322 47.619 0.00 0.00 0.00 2.83
1455 2936 1.677576 TGCTCTGCCAAACTCTGTTTG 59.322 47.619 14.15 14.15 0.00 2.93
1456 2937 1.601412 GCTCTGCCAAACTCTGTTTGC 60.601 52.381 15.29 11.86 0.00 3.68
1457 2938 1.952296 CTCTGCCAAACTCTGTTTGCT 59.048 47.619 15.29 0.00 0.00 3.91
1458 2939 1.677576 TCTGCCAAACTCTGTTTGCTG 59.322 47.619 15.29 13.84 0.00 4.41
1459 2940 1.406539 CTGCCAAACTCTGTTTGCTGT 59.593 47.619 15.29 0.00 0.00 4.40
1460 2941 2.618241 CTGCCAAACTCTGTTTGCTGTA 59.382 45.455 15.29 4.56 0.00 2.74
1461 2942 3.020274 TGCCAAACTCTGTTTGCTGTAA 58.980 40.909 15.29 0.00 0.00 2.41
1493 2976 5.977635 TGTCAAAAGTCTGAACTCTGAAGA 58.022 37.500 0.00 0.00 33.48 2.87
1494 2977 6.406370 TGTCAAAAGTCTGAACTCTGAAGAA 58.594 36.000 0.00 0.00 33.48 2.52
1501 2984 6.825610 AGTCTGAACTCTGAAGAAGTTTCAT 58.174 36.000 0.00 0.00 32.27 2.57
1502 2985 7.957002 AGTCTGAACTCTGAAGAAGTTTCATA 58.043 34.615 0.00 0.00 32.27 2.15
1503 2986 8.087750 AGTCTGAACTCTGAAGAAGTTTCATAG 58.912 37.037 2.05 2.05 32.27 2.23
1534 3017 4.225208 GACCAACGTACTGTCTGACTAAC 58.775 47.826 9.51 3.88 0.00 2.34
1619 3228 9.346725 GAAATTTCAGGTGTAAATTCATGACTC 57.653 33.333 13.40 0.00 35.91 3.36
1620 3229 6.817765 TTTCAGGTGTAAATTCATGACTCC 57.182 37.500 0.00 0.00 0.00 3.85
1621 3230 4.503910 TCAGGTGTAAATTCATGACTCCG 58.496 43.478 0.00 0.00 33.06 4.63
1644 3253 8.191446 TCCGATCTGAAAAGAGATTACTGTAAG 58.809 37.037 6.40 0.00 34.33 2.34
1673 3283 5.739752 TCACAGCATTTCAGTATACATGC 57.260 39.130 14.85 14.85 42.05 4.06
1711 3321 8.886719 TCTCAAGTAAATTCATAACTCTGCATG 58.113 33.333 0.00 0.00 0.00 4.06
1880 3727 3.462021 ACAGTCTGAACTCTGAAGTTGC 58.538 45.455 6.91 0.00 45.80 4.17
2010 3877 2.095567 CGGTTTGCCTCTTGAACATCTG 60.096 50.000 0.00 0.00 0.00 2.90
2016 3883 2.935201 GCCTCTTGAACATCTGCAGTAG 59.065 50.000 14.67 10.02 0.00 2.57
2026 3894 5.633830 ACATCTGCAGTAGGAACATTTTG 57.366 39.130 14.67 0.00 0.00 2.44
2031 3909 3.255642 TGCAGTAGGAACATTTTGAAGCC 59.744 43.478 0.00 0.00 0.00 4.35
2052 3936 7.483580 AGCCTCTACTACAAAGAAACTATGT 57.516 36.000 0.00 0.00 0.00 2.29
2158 4042 2.548057 CCTAGCTGCTCGTTTCAACAAA 59.452 45.455 4.91 0.00 0.00 2.83
2248 4136 2.193248 GTGCATAGGGACAGGGGC 59.807 66.667 0.00 0.00 35.12 5.80
2259 4148 1.830477 GGACAGGGGCAATGCAATTTA 59.170 47.619 7.79 0.00 31.22 1.40
2263 4152 3.776417 ACAGGGGCAATGCAATTTATTCT 59.224 39.130 7.79 0.00 31.22 2.40
2276 4165 8.125978 TGCAATTTATTCTTCTTCATGGTCTT 57.874 30.769 0.00 0.00 0.00 3.01
2637 4530 7.985184 ACAGTTTTATCAGACAAGTGACAACTA 59.015 33.333 0.00 0.00 34.77 2.24
2656 4549 7.042335 ACAACTAGAACTGGTCTTGTATATGC 58.958 38.462 10.12 0.00 40.85 3.14
2736 4629 1.087501 GGAGCGCTTTAGGTTCCAAG 58.912 55.000 13.26 0.00 0.00 3.61
2905 4798 7.588512 AGAAATTCAAACATGTAGCAGTTCTC 58.411 34.615 0.00 0.00 0.00 2.87
2931 4824 3.427233 GCAGTTCTTCTGGATGTTGCATC 60.427 47.826 0.00 0.80 43.78 3.91
2941 4834 3.697542 TGGATGTTGCATCCTTCATTCAG 59.302 43.478 23.53 0.00 38.95 3.02
2958 4851 1.872952 TCAGTCTTGCACATGGTTTCG 59.127 47.619 0.00 0.00 0.00 3.46
2997 4890 8.863872 ACATATATTCAAAATAGCCCCTACAC 57.136 34.615 0.00 0.00 0.00 2.90
3199 5100 7.516312 GCACAGTAATACGGTATTGAACTTAGC 60.516 40.741 20.75 17.13 0.00 3.09
3205 5106 5.607119 ACGGTATTGAACTTAGCTTGTTG 57.393 39.130 9.12 0.00 0.00 3.33
3326 5228 7.615582 TGCAGAGTATGAAAAGAAATACCAG 57.384 36.000 0.00 0.00 30.91 4.00
3329 5231 7.467623 CAGAGTATGAAAAGAAATACCAGCAC 58.532 38.462 0.00 0.00 30.91 4.40
3368 5270 5.674052 ATAGCATAGTATCAGGGAAGCTG 57.326 43.478 0.00 0.00 32.70 4.24
3371 5273 2.478872 TAGTATCAGGGAAGCTGCCT 57.521 50.000 11.64 0.00 39.53 4.75
3383 5285 2.273449 CTGCCTGATGGGTGGGAC 59.727 66.667 0.00 0.00 37.43 4.46
3384 5286 2.531428 TGCCTGATGGGTGGGACA 60.531 61.111 0.00 0.00 37.43 4.02
3395 5297 1.070786 GTGGGACAACGCTCTTCCA 59.929 57.895 0.00 0.00 44.16 3.53
3404 5306 0.318762 ACGCTCTTCCAGTGAGTTCC 59.681 55.000 0.00 0.00 36.37 3.62
3426 5328 4.884164 CCCCTCTGAACCATAAATGTCTTC 59.116 45.833 0.00 0.00 0.00 2.87
3428 5330 6.126768 CCCCTCTGAACCATAAATGTCTTCTA 60.127 42.308 0.00 0.00 0.00 2.10
3497 5403 2.099592 TGCCTTGTTTGTTCTGCAGAAG 59.900 45.455 29.13 15.22 34.27 2.85
3549 5455 2.158696 AGGAACCTATCTCAGCAATGCC 60.159 50.000 0.00 0.00 0.00 4.40
3704 5610 1.145598 CAGAGAGCATGCGATGGGT 59.854 57.895 13.01 0.00 0.00 4.51
3851 5757 7.280428 GTGATCTTTGTGATGACTCATGATTCT 59.720 37.037 13.56 0.60 36.55 2.40
3854 5760 8.883954 TCTTTGTGATGACTCATGATTCTATC 57.116 34.615 13.56 13.59 32.98 2.08
4016 7456 0.179034 GGCCCTCTATCCTTGCACTG 60.179 60.000 0.00 0.00 0.00 3.66
4168 7609 1.926511 ATCGCAGAAAAAGCAGCCGG 61.927 55.000 0.00 0.00 43.58 6.13
4295 7736 5.685075 CGAGGTTACTTCCAGGATTAGCATT 60.685 44.000 0.00 0.00 0.00 3.56
4334 7775 2.168728 GGGATGGGAGAAGTATATCGGC 59.831 54.545 0.00 0.00 0.00 5.54
4379 7820 2.556287 CGCTTCGGTTCAAGTGCC 59.444 61.111 0.00 0.00 0.00 5.01
4496 7940 6.112734 ACAAATGTATATGAAGGTTCGCTCA 58.887 36.000 0.00 0.00 0.00 4.26
4505 8077 5.392767 TGAAGGTTCGCTCATATATCCTC 57.607 43.478 0.00 0.00 0.00 3.71
4795 8510 2.775911 TGCCAGAATCTGAACTCCAG 57.224 50.000 12.53 0.00 44.27 3.86
4903 8889 2.871096 TGTTGGGTGTGGGATCTTAC 57.129 50.000 0.00 0.00 0.00 2.34
4906 8892 2.234414 GTTGGGTGTGGGATCTTACGTA 59.766 50.000 0.00 0.00 0.00 3.57
4950 8936 4.098044 CGGTTGATCCTCTAGCTTTCTGTA 59.902 45.833 0.00 0.00 0.00 2.74
4952 8938 6.016192 CGGTTGATCCTCTAGCTTTCTGTATA 60.016 42.308 0.00 0.00 0.00 1.47
4991 9141 4.503296 CGGCCATATTTCCTAGCTAGTTGT 60.503 45.833 19.31 5.38 0.00 3.32
4992 9142 5.279306 CGGCCATATTTCCTAGCTAGTTGTA 60.279 44.000 19.31 7.30 0.00 2.41
4993 9143 6.166982 GGCCATATTTCCTAGCTAGTTGTAG 58.833 44.000 19.31 3.92 0.00 2.74
4994 9144 6.239629 GGCCATATTTCCTAGCTAGTTGTAGT 60.240 42.308 19.31 3.41 0.00 2.73
4995 9145 7.217906 GCCATATTTCCTAGCTAGTTGTAGTT 58.782 38.462 19.31 0.84 0.00 2.24
4996 9146 7.171678 GCCATATTTCCTAGCTAGTTGTAGTTG 59.828 40.741 19.31 8.44 0.00 3.16
5033 9241 5.662674 AAGTGTAACCCTTGTCTAGCTAG 57.337 43.478 15.01 15.01 37.80 3.42
5034 9242 4.675038 AGTGTAACCCTTGTCTAGCTAGT 58.325 43.478 20.10 1.17 37.80 2.57
5035 9243 5.824421 AGTGTAACCCTTGTCTAGCTAGTA 58.176 41.667 20.10 8.34 37.80 1.82
5101 9309 2.899339 GCAATCTCCTCCCTGCGC 60.899 66.667 0.00 0.00 0.00 6.09
5142 9350 1.004745 GGCCACTGAGAATTCCTCCAA 59.995 52.381 0.00 0.00 41.25 3.53
5279 9487 1.022735 CATGCTCCTGAACATCCAGC 58.977 55.000 0.00 0.00 32.97 4.85
5291 9499 3.715638 ACATCCAGCCATCATCATAGG 57.284 47.619 0.00 0.00 0.00 2.57
5346 9563 3.799281 CTCAGGGTCTGAATCTGAGTC 57.201 52.381 20.97 0.00 45.50 3.36
5347 9564 2.095461 TCAGGGTCTGAATCTGAGTCG 58.905 52.381 0.32 0.00 37.57 4.18
5348 9565 0.820871 AGGGTCTGAATCTGAGTCGC 59.179 55.000 0.32 0.00 0.00 5.19
5349 9566 0.179097 GGGTCTGAATCTGAGTCGCC 60.179 60.000 0.32 3.14 0.00 5.54
5350 9567 0.526524 GGTCTGAATCTGAGTCGCCG 60.527 60.000 0.32 0.00 0.00 6.46
5351 9568 1.139734 TCTGAATCTGAGTCGCCGC 59.860 57.895 0.32 0.00 0.00 6.53
5352 9569 1.880340 CTGAATCTGAGTCGCCGCC 60.880 63.158 0.32 0.00 0.00 6.13
5353 9570 2.956964 GAATCTGAGTCGCCGCCG 60.957 66.667 0.00 0.00 0.00 6.46
5354 9571 3.701604 GAATCTGAGTCGCCGCCGT 62.702 63.158 0.00 0.00 35.54 5.68
5369 9586 0.592754 GCCGTACTCATCGTCAGAGC 60.593 60.000 0.00 0.00 36.58 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.304911 TCCATCCTCTCACTACTCCAG 57.695 52.381 0.00 0.00 0.00 3.86
1 2 3.205282 TCATCCATCCTCTCACTACTCCA 59.795 47.826 0.00 0.00 0.00 3.86
2 3 3.572255 GTCATCCATCCTCTCACTACTCC 59.428 52.174 0.00 0.00 0.00 3.85
3 4 3.572255 GGTCATCCATCCTCTCACTACTC 59.428 52.174 0.00 0.00 0.00 2.59
4 5 3.571590 GGTCATCCATCCTCTCACTACT 58.428 50.000 0.00 0.00 0.00 2.57
5 6 2.294791 CGGTCATCCATCCTCTCACTAC 59.705 54.545 0.00 0.00 0.00 2.73
6 7 2.587522 CGGTCATCCATCCTCTCACTA 58.412 52.381 0.00 0.00 0.00 2.74
7 8 1.407936 CGGTCATCCATCCTCTCACT 58.592 55.000 0.00 0.00 0.00 3.41
8 9 0.390860 CCGGTCATCCATCCTCTCAC 59.609 60.000 0.00 0.00 0.00 3.51
9 10 1.402896 GCCGGTCATCCATCCTCTCA 61.403 60.000 1.90 0.00 0.00 3.27
10 11 1.369321 GCCGGTCATCCATCCTCTC 59.631 63.158 1.90 0.00 0.00 3.20
11 12 2.143419 GGCCGGTCATCCATCCTCT 61.143 63.158 0.00 0.00 0.00 3.69
12 13 2.427753 GGCCGGTCATCCATCCTC 59.572 66.667 0.00 0.00 0.00 3.71
13 14 3.550431 CGGCCGGTCATCCATCCT 61.550 66.667 20.10 0.00 0.00 3.24
14 15 4.626081 CCGGCCGGTCATCCATCC 62.626 72.222 36.64 0.00 0.00 3.51
15 16 4.626081 CCCGGCCGGTCATCCATC 62.626 72.222 40.52 0.00 0.00 3.51
18 19 4.547367 CTTCCCGGCCGGTCATCC 62.547 72.222 40.52 0.00 0.00 3.51
19 20 1.963464 TAACTTCCCGGCCGGTCATC 61.963 60.000 40.52 0.00 0.00 2.92
20 21 1.968050 CTAACTTCCCGGCCGGTCAT 61.968 60.000 40.52 23.90 0.00 3.06
21 22 2.604079 TAACTTCCCGGCCGGTCA 60.604 61.111 40.52 25.50 0.00 4.02
22 23 2.186125 CTAACTTCCCGGCCGGTC 59.814 66.667 40.52 0.00 0.00 4.79
23 24 2.284112 TCTAACTTCCCGGCCGGT 60.284 61.111 40.52 25.49 0.00 5.28
24 25 2.186125 GTCTAACTTCCCGGCCGG 59.814 66.667 37.99 37.99 0.00 6.13
25 26 2.012902 ATCGTCTAACTTCCCGGCCG 62.013 60.000 21.04 21.04 0.00 6.13
26 27 0.177373 AATCGTCTAACTTCCCGGCC 59.823 55.000 0.00 0.00 0.00 6.13
27 28 1.664151 CAAATCGTCTAACTTCCCGGC 59.336 52.381 0.00 0.00 0.00 6.13
28 29 2.093869 TCCAAATCGTCTAACTTCCCGG 60.094 50.000 0.00 0.00 0.00 5.73
29 30 3.241067 TCCAAATCGTCTAACTTCCCG 57.759 47.619 0.00 0.00 0.00 5.14
30 31 5.183228 TCATTCCAAATCGTCTAACTTCCC 58.817 41.667 0.00 0.00 0.00 3.97
31 32 5.875359 ACTCATTCCAAATCGTCTAACTTCC 59.125 40.000 0.00 0.00 0.00 3.46
32 33 6.590292 TCACTCATTCCAAATCGTCTAACTTC 59.410 38.462 0.00 0.00 0.00 3.01
33 34 6.464222 TCACTCATTCCAAATCGTCTAACTT 58.536 36.000 0.00 0.00 0.00 2.66
34 35 6.037786 TCACTCATTCCAAATCGTCTAACT 57.962 37.500 0.00 0.00 0.00 2.24
35 36 6.018669 GGATCACTCATTCCAAATCGTCTAAC 60.019 42.308 0.00 0.00 31.99 2.34
36 37 6.049149 GGATCACTCATTCCAAATCGTCTAA 58.951 40.000 0.00 0.00 31.99 2.10
37 38 5.128663 TGGATCACTCATTCCAAATCGTCTA 59.871 40.000 0.00 0.00 39.05 2.59
38 39 4.080919 TGGATCACTCATTCCAAATCGTCT 60.081 41.667 0.00 0.00 39.05 4.18
39 40 4.034510 GTGGATCACTCATTCCAAATCGTC 59.965 45.833 0.00 0.00 43.42 4.20
40 41 3.941483 GTGGATCACTCATTCCAAATCGT 59.059 43.478 0.00 0.00 43.42 3.73
41 42 3.940852 TGTGGATCACTCATTCCAAATCG 59.059 43.478 0.00 0.00 43.42 3.34
42 43 5.240713 GTGTGGATCACTCATTCCAAATC 57.759 43.478 0.00 0.00 43.42 2.17
58 59 2.234661 CTCATAACTGCTCCAGTGTGGA 59.765 50.000 0.00 0.00 44.62 4.02
59 60 2.625737 CTCATAACTGCTCCAGTGTGG 58.374 52.381 0.00 0.00 44.62 4.17
60 61 2.625737 CCTCATAACTGCTCCAGTGTG 58.374 52.381 0.00 2.35 44.62 3.82
61 62 1.556911 CCCTCATAACTGCTCCAGTGT 59.443 52.381 0.00 0.00 44.62 3.55
62 63 1.134280 CCCCTCATAACTGCTCCAGTG 60.134 57.143 0.00 0.00 44.62 3.66
64 65 1.134280 CACCCCTCATAACTGCTCCAG 60.134 57.143 0.00 0.00 37.52 3.86
65 66 0.911769 CACCCCTCATAACTGCTCCA 59.088 55.000 0.00 0.00 0.00 3.86
66 67 1.204146 TCACCCCTCATAACTGCTCC 58.796 55.000 0.00 0.00 0.00 4.70
67 68 3.567478 AATCACCCCTCATAACTGCTC 57.433 47.619 0.00 0.00 0.00 4.26
68 69 4.298626 TCTAATCACCCCTCATAACTGCT 58.701 43.478 0.00 0.00 0.00 4.24
69 70 4.345257 TCTCTAATCACCCCTCATAACTGC 59.655 45.833 0.00 0.00 0.00 4.40
70 71 6.678568 ATCTCTAATCACCCCTCATAACTG 57.321 41.667 0.00 0.00 0.00 3.16
71 72 8.798975 TTAATCTCTAATCACCCCTCATAACT 57.201 34.615 0.00 0.00 0.00 2.24
74 75 8.531982 CGATTTAATCTCTAATCACCCCTCATA 58.468 37.037 3.34 0.00 31.70 2.15
75 76 7.016661 ACGATTTAATCTCTAATCACCCCTCAT 59.983 37.037 3.34 0.00 31.70 2.90
76 77 6.326583 ACGATTTAATCTCTAATCACCCCTCA 59.673 38.462 3.34 0.00 31.70 3.86
77 78 6.760291 ACGATTTAATCTCTAATCACCCCTC 58.240 40.000 3.34 0.00 31.70 4.30
78 79 6.326583 TGACGATTTAATCTCTAATCACCCCT 59.673 38.462 3.34 0.00 31.70 4.79
79 80 6.522054 TGACGATTTAATCTCTAATCACCCC 58.478 40.000 3.34 0.00 31.70 4.95
80 81 8.433421 TTTGACGATTTAATCTCTAATCACCC 57.567 34.615 3.34 0.00 31.70 4.61
217 218 4.629523 TCAACACGAACCGGGGCC 62.630 66.667 6.32 0.00 32.94 5.80
218 219 2.592287 TTCAACACGAACCGGGGC 60.592 61.111 6.32 0.00 32.94 5.80
225 226 1.000060 CTAGTCCCGGTTCAACACGAA 60.000 52.381 0.00 0.00 0.00 3.85
226 227 0.599558 CTAGTCCCGGTTCAACACGA 59.400 55.000 0.00 0.00 0.00 4.35
227 228 0.389426 CCTAGTCCCGGTTCAACACG 60.389 60.000 0.00 0.00 0.00 4.49
228 229 0.036671 CCCTAGTCCCGGTTCAACAC 60.037 60.000 0.00 0.00 0.00 3.32
229 230 1.196104 CCCCTAGTCCCGGTTCAACA 61.196 60.000 0.00 0.00 0.00 3.33
230 231 1.600638 CCCCTAGTCCCGGTTCAAC 59.399 63.158 0.00 0.00 0.00 3.18
231 232 1.614226 CCCCCTAGTCCCGGTTCAA 60.614 63.158 0.00 0.00 0.00 2.69
232 233 2.039951 CCCCCTAGTCCCGGTTCA 59.960 66.667 0.00 0.00 0.00 3.18
250 251 5.480205 CACTAAAGGGTGGAGACTAAACTC 58.520 45.833 0.00 0.00 36.31 3.01
251 252 4.262938 GCACTAAAGGGTGGAGACTAAACT 60.263 45.833 0.00 0.00 37.65 2.66
252 253 4.001652 GCACTAAAGGGTGGAGACTAAAC 58.998 47.826 0.00 0.00 37.65 2.01
253 254 3.008704 GGCACTAAAGGGTGGAGACTAAA 59.991 47.826 0.00 0.00 37.65 1.85
254 255 2.570302 GGCACTAAAGGGTGGAGACTAA 59.430 50.000 0.00 0.00 37.65 2.24
255 256 2.185387 GGCACTAAAGGGTGGAGACTA 58.815 52.381 0.00 0.00 37.65 2.59
256 257 0.984995 GGCACTAAAGGGTGGAGACT 59.015 55.000 0.00 0.00 37.65 3.24
257 258 0.391263 CGGCACTAAAGGGTGGAGAC 60.391 60.000 0.00 0.00 37.65 3.36
258 259 1.980052 CGGCACTAAAGGGTGGAGA 59.020 57.895 0.00 0.00 37.65 3.71
259 260 1.745489 GCGGCACTAAAGGGTGGAG 60.745 63.158 0.00 0.00 37.65 3.86
260 261 1.774894 AAGCGGCACTAAAGGGTGGA 61.775 55.000 1.45 0.00 37.65 4.02
261 262 0.893727 AAAGCGGCACTAAAGGGTGG 60.894 55.000 1.45 0.00 37.65 4.61
262 263 0.521735 GAAAGCGGCACTAAAGGGTG 59.478 55.000 1.45 0.00 39.91 4.61
263 264 0.109723 TGAAAGCGGCACTAAAGGGT 59.890 50.000 1.45 0.00 0.00 4.34
264 265 0.804989 CTGAAAGCGGCACTAAAGGG 59.195 55.000 1.45 0.00 0.00 3.95
265 266 1.808411 TCTGAAAGCGGCACTAAAGG 58.192 50.000 1.45 0.00 0.00 3.11
266 267 2.095718 GGTTCTGAAAGCGGCACTAAAG 60.096 50.000 1.45 0.00 0.00 1.85
267 268 1.877443 GGTTCTGAAAGCGGCACTAAA 59.123 47.619 1.45 0.00 0.00 1.85
268 269 1.519408 GGTTCTGAAAGCGGCACTAA 58.481 50.000 1.45 0.00 0.00 2.24
269 270 3.226884 GGTTCTGAAAGCGGCACTA 57.773 52.632 1.45 0.00 0.00 2.74
270 271 4.065110 GGTTCTGAAAGCGGCACT 57.935 55.556 1.45 0.00 0.00 4.40
276 277 1.519408 TTAGTGCCGGTTCTGAAAGC 58.481 50.000 1.90 0.00 0.00 3.51
277 278 2.484264 CCTTTAGTGCCGGTTCTGAAAG 59.516 50.000 1.90 7.12 0.00 2.62
278 279 2.500229 CCTTTAGTGCCGGTTCTGAAA 58.500 47.619 1.90 0.00 0.00 2.69
279 280 1.271163 CCCTTTAGTGCCGGTTCTGAA 60.271 52.381 1.90 4.29 0.00 3.02
280 281 0.323629 CCCTTTAGTGCCGGTTCTGA 59.676 55.000 1.90 0.00 0.00 3.27
281 282 1.305930 GCCCTTTAGTGCCGGTTCTG 61.306 60.000 1.90 0.00 0.00 3.02
282 283 1.002502 GCCCTTTAGTGCCGGTTCT 60.003 57.895 1.90 4.41 0.00 3.01
283 284 2.044555 GGCCCTTTAGTGCCGGTTC 61.045 63.158 1.90 0.00 38.00 3.62
284 285 2.035155 GGCCCTTTAGTGCCGGTT 59.965 61.111 1.90 0.00 38.00 4.44
289 290 1.736126 GTTCGTAAGGCCCTTTAGTGC 59.264 52.381 0.00 0.00 38.47 4.40
290 291 2.353323 GGTTCGTAAGGCCCTTTAGTG 58.647 52.381 0.00 0.00 38.47 2.74
291 292 1.066645 CGGTTCGTAAGGCCCTTTAGT 60.067 52.381 0.00 0.00 38.47 2.24
292 293 1.648504 CGGTTCGTAAGGCCCTTTAG 58.351 55.000 0.00 0.00 38.47 1.85
293 294 0.249955 CCGGTTCGTAAGGCCCTTTA 59.750 55.000 0.00 0.00 38.47 1.85
294 295 1.002990 CCGGTTCGTAAGGCCCTTT 60.003 57.895 0.00 0.00 38.47 3.11
295 296 0.904394 TACCGGTTCGTAAGGCCCTT 60.904 55.000 15.04 0.00 38.47 3.95
296 297 1.305213 TACCGGTTCGTAAGGCCCT 60.305 57.895 15.04 0.00 38.47 5.19
297 298 1.153568 GTACCGGTTCGTAAGGCCC 60.154 63.158 15.04 0.00 38.47 5.80
298 299 1.102978 TAGTACCGGTTCGTAAGGCC 58.897 55.000 15.04 0.00 38.47 5.19
299 300 2.939460 TTAGTACCGGTTCGTAAGGC 57.061 50.000 15.04 0.00 38.47 4.35
300 301 3.774066 CCTTTAGTACCGGTTCGTAAGG 58.226 50.000 22.94 22.94 38.47 2.69
301 302 3.182182 GCCTTTAGTACCGGTTCGTAAG 58.818 50.000 15.04 15.81 0.00 2.34
302 303 2.094234 GGCCTTTAGTACCGGTTCGTAA 60.094 50.000 15.04 5.59 0.00 3.18
303 304 1.476488 GGCCTTTAGTACCGGTTCGTA 59.524 52.381 15.04 0.00 0.00 3.43
304 305 0.247460 GGCCTTTAGTACCGGTTCGT 59.753 55.000 15.04 0.00 0.00 3.85
305 306 0.460811 GGGCCTTTAGTACCGGTTCG 60.461 60.000 15.04 0.00 0.00 3.95
306 307 0.460811 CGGGCCTTTAGTACCGGTTC 60.461 60.000 15.04 8.12 42.48 3.62
307 308 1.598517 CGGGCCTTTAGTACCGGTT 59.401 57.895 15.04 0.00 42.48 4.44
308 309 3.302129 CGGGCCTTTAGTACCGGT 58.698 61.111 13.98 13.98 42.48 5.28
311 312 3.063510 AGAAAACGGGCCTTTAGTACC 57.936 47.619 0.84 0.00 0.00 3.34
312 313 4.825422 ACTAGAAAACGGGCCTTTAGTAC 58.175 43.478 0.84 0.00 0.00 2.73
313 314 5.716703 ACTACTAGAAAACGGGCCTTTAGTA 59.283 40.000 0.84 2.55 0.00 1.82
314 315 4.529769 ACTACTAGAAAACGGGCCTTTAGT 59.470 41.667 0.84 1.35 0.00 2.24
315 316 4.868734 CACTACTAGAAAACGGGCCTTTAG 59.131 45.833 0.84 0.00 0.00 1.85
316 317 4.322953 CCACTACTAGAAAACGGGCCTTTA 60.323 45.833 0.84 0.00 0.00 1.85
317 318 3.558533 CCACTACTAGAAAACGGGCCTTT 60.559 47.826 0.84 0.00 0.00 3.11
318 319 2.027469 CCACTACTAGAAAACGGGCCTT 60.027 50.000 0.84 0.00 0.00 4.35
319 320 1.553704 CCACTACTAGAAAACGGGCCT 59.446 52.381 0.84 0.00 0.00 5.19
320 321 2.010544 GCCACTACTAGAAAACGGGCC 61.011 57.143 0.00 0.00 34.17 5.80
321 322 1.366679 GCCACTACTAGAAAACGGGC 58.633 55.000 0.00 0.00 0.00 6.13
322 323 1.553704 AGGCCACTACTAGAAAACGGG 59.446 52.381 5.01 0.00 0.00 5.28
323 324 3.329929 AAGGCCACTACTAGAAAACGG 57.670 47.619 5.01 0.00 0.00 4.44
324 325 3.855950 CGTAAGGCCACTACTAGAAAACG 59.144 47.826 5.01 0.00 0.00 3.60
343 344 9.206870 ACTTTCTCGTGAATTTTTAATACCGTA 57.793 29.630 0.02 0.00 31.56 4.02
344 345 8.091385 ACTTTCTCGTGAATTTTTAATACCGT 57.909 30.769 0.02 0.00 31.56 4.83
385 386 8.815565 TCCTTATGTTCATGGTTTTGCTTATA 57.184 30.769 0.00 0.00 0.00 0.98
441 442 2.047655 TCCACACGCATTCCGACC 60.048 61.111 0.00 0.00 41.02 4.79
451 452 0.523072 CAAAGATTGGCCTCCACACG 59.477 55.000 3.32 0.00 30.78 4.49
480 513 7.036220 TGAAAAGAGATGTAGATCGGAAAGAC 58.964 38.462 0.00 0.00 33.34 3.01
487 520 6.758416 TCACCAATGAAAAGAGATGTAGATCG 59.242 38.462 0.00 0.00 33.34 3.69
491 524 5.063944 CCGTCACCAATGAAAAGAGATGTAG 59.936 44.000 0.00 0.00 36.31 2.74
510 543 5.204409 ACACAGTAGAATAACAACCGTCA 57.796 39.130 0.00 0.00 0.00 4.35
513 546 6.721571 ATCAACACAGTAGAATAACAACCG 57.278 37.500 0.00 0.00 0.00 4.44
527 560 6.309712 AGATGACTCACAAAATCAACACAG 57.690 37.500 0.00 0.00 0.00 3.66
537 570 8.414003 AGCTTATCGTAATAGATGACTCACAAA 58.586 33.333 0.00 0.00 32.39 2.83
538 571 7.941919 AGCTTATCGTAATAGATGACTCACAA 58.058 34.615 0.00 0.00 32.39 3.33
545 578 8.824756 AGGGATAAGCTTATCGTAATAGATGA 57.175 34.615 30.74 0.00 40.30 2.92
556 589 3.612004 CGTCACCGAGGGATAAGCTTATC 60.612 52.174 30.48 30.48 36.52 1.75
564 597 0.034767 AGACACGTCACCGAGGGATA 60.035 55.000 0.00 0.00 37.88 2.59
566 599 1.521450 GAAGACACGTCACCGAGGGA 61.521 60.000 0.00 0.00 37.88 4.20
569 602 1.442184 CCGAAGACACGTCACCGAG 60.442 63.158 11.18 0.00 37.88 4.63
570 603 2.640989 CCGAAGACACGTCACCGA 59.359 61.111 11.18 0.00 37.88 4.69
591 675 6.360329 CACCGACAACTACAAATACTGAAAC 58.640 40.000 0.00 0.00 0.00 2.78
599 683 5.104374 CGTATACCACCGACAACTACAAAT 58.896 41.667 0.00 0.00 0.00 2.32
608 692 1.766494 ACATCCGTATACCACCGACA 58.234 50.000 0.00 0.00 0.00 4.35
639 727 7.010830 AGTCATCACATACAAGAAACATCATCG 59.989 37.037 0.00 0.00 0.00 3.84
640 728 8.121086 CAGTCATCACATACAAGAAACATCATC 58.879 37.037 0.00 0.00 0.00 2.92
646 2064 7.658179 TCTTCAGTCATCACATACAAGAAAC 57.342 36.000 0.00 0.00 0.00 2.78
648 2066 9.942850 TTAATCTTCAGTCATCACATACAAGAA 57.057 29.630 0.00 0.00 0.00 2.52
721 2155 3.057596 TCGCGATGGAATGCTTTTCTTTT 60.058 39.130 3.71 0.00 0.00 2.27
824 2258 1.728971 CTGAAGCAATCCACGTCTCAC 59.271 52.381 0.00 0.00 0.00 3.51
825 2259 1.338105 CCTGAAGCAATCCACGTCTCA 60.338 52.381 0.00 0.00 0.00 3.27
888 2323 0.108585 GGAGTGTTGAACTGGGCTGA 59.891 55.000 0.00 0.00 40.07 4.26
906 2345 2.673523 CAGCTGGTCAAGGGAGGG 59.326 66.667 5.57 0.00 0.00 4.30
907 2346 2.045536 GCAGCTGGTCAAGGGAGG 60.046 66.667 17.12 0.00 0.00 4.30
908 2347 2.045536 GGCAGCTGGTCAAGGGAG 60.046 66.667 17.12 0.00 0.00 4.30
909 2348 2.853542 TGGCAGCTGGTCAAGGGA 60.854 61.111 17.12 0.00 0.00 4.20
1021 2484 4.641645 CAAGGCAGCCACCGTGGA 62.642 66.667 22.37 0.00 40.96 4.02
1239 2717 3.316573 GAAGAGGACGTGGCCCAGG 62.317 68.421 0.00 0.97 0.00 4.45
1332 2810 0.179076 CGTAGTGGAGCATGCATCCA 60.179 55.000 25.68 25.68 44.63 3.41
1335 2813 1.884464 CGCGTAGTGGAGCATGCAT 60.884 57.895 21.98 4.75 39.99 3.96
1389 2867 2.670414 CGACCAAAATGTGAGAGAGCTC 59.330 50.000 5.27 5.27 41.67 4.09
1421 2902 3.503748 GGCAGAGCACAAATACAGAGTTT 59.496 43.478 0.00 0.00 0.00 2.66
1453 2934 4.001618 TGACATAGCACACTTACAGCAA 57.998 40.909 0.00 0.00 0.00 3.91
1454 2935 3.676291 TGACATAGCACACTTACAGCA 57.324 42.857 0.00 0.00 0.00 4.41
1455 2936 5.049405 ACTTTTGACATAGCACACTTACAGC 60.049 40.000 0.00 0.00 0.00 4.40
1456 2937 6.425114 AGACTTTTGACATAGCACACTTACAG 59.575 38.462 0.00 0.00 0.00 2.74
1457 2938 6.202762 CAGACTTTTGACATAGCACACTTACA 59.797 38.462 0.00 0.00 0.00 2.41
1458 2939 6.423905 TCAGACTTTTGACATAGCACACTTAC 59.576 38.462 0.00 0.00 0.00 2.34
1459 2940 6.521162 TCAGACTTTTGACATAGCACACTTA 58.479 36.000 0.00 0.00 0.00 2.24
1460 2941 5.368145 TCAGACTTTTGACATAGCACACTT 58.632 37.500 0.00 0.00 0.00 3.16
1461 2942 4.960938 TCAGACTTTTGACATAGCACACT 58.039 39.130 0.00 0.00 0.00 3.55
1493 2976 6.032956 TGGTCGTGTGATACTATGAAACTT 57.967 37.500 0.00 0.00 0.00 2.66
1494 2977 5.654603 TGGTCGTGTGATACTATGAAACT 57.345 39.130 0.00 0.00 0.00 2.66
1534 3017 9.933723 ACCTCCTATGAAAATTTTGATCAAAAG 57.066 29.630 31.05 18.45 42.72 2.27
1619 3228 7.043059 GCTTACAGTAATCTCTTTTCAGATCGG 60.043 40.741 0.00 0.00 31.44 4.18
1620 3229 7.704472 AGCTTACAGTAATCTCTTTTCAGATCG 59.296 37.037 0.00 0.00 31.44 3.69
1621 3230 8.816144 CAGCTTACAGTAATCTCTTTTCAGATC 58.184 37.037 0.00 0.00 31.44 2.75
1673 3283 8.298854 TGAATTTACTTGAGAATTGGACATGTG 58.701 33.333 1.15 0.00 0.00 3.21
1708 3318 3.716601 TCATCCGTACATAGCACACATG 58.283 45.455 0.00 0.00 0.00 3.21
1711 3321 5.154932 GTCTATCATCCGTACATAGCACAC 58.845 45.833 0.00 0.00 0.00 3.82
1722 3332 6.878923 TCTCAAAACAATTGTCTATCATCCGT 59.121 34.615 12.39 0.00 0.00 4.69
1723 3333 7.307493 TCTCAAAACAATTGTCTATCATCCG 57.693 36.000 12.39 0.00 0.00 4.18
1880 3727 9.827411 CATCTATCTGCATCAACAAATATGAAG 57.173 33.333 0.00 0.00 30.96 3.02
2010 3877 3.507622 AGGCTTCAAAATGTTCCTACTGC 59.492 43.478 0.00 0.00 0.00 4.40
2016 3883 5.938125 TGTAGTAGAGGCTTCAAAATGTTCC 59.062 40.000 0.00 0.00 0.00 3.62
2026 3894 8.035984 ACATAGTTTCTTTGTAGTAGAGGCTTC 58.964 37.037 0.00 0.00 0.00 3.86
2031 3909 8.443937 GGCAAACATAGTTTCTTTGTAGTAGAG 58.556 37.037 0.00 0.00 0.00 2.43
2052 3936 3.554934 ACATCAGAACAGTTCAGGCAAA 58.445 40.909 15.85 0.00 0.00 3.68
2158 4042 1.619827 TCCACGACAGTTAAATCGGGT 59.380 47.619 9.16 0.00 40.19 5.28
2248 4136 8.712285 ACCATGAAGAAGAATAAATTGCATTG 57.288 30.769 0.00 0.00 0.00 2.82
2276 4165 8.188357 ACCATCCCCAAGTATAACATACCTATA 58.812 37.037 0.00 0.00 0.00 1.31
2637 4530 4.471386 ACCTGCATATACAAGACCAGTTCT 59.529 41.667 0.00 0.00 35.32 3.01
2656 4549 6.538742 CCATAACCAATTGTAGTAGTCACCTG 59.461 42.308 4.43 0.00 0.00 4.00
2712 4605 1.032114 AACCTAAAGCGCTCCCATGC 61.032 55.000 12.06 0.00 0.00 4.06
2736 4629 3.418684 TTTCTGGTTGCCTCTACTTCC 57.581 47.619 0.00 0.00 0.00 3.46
2874 4767 7.140705 TGCTACATGTTTGAATTTCTTCACAG 58.859 34.615 2.30 0.00 41.05 3.66
2905 4798 3.902881 ACATCCAGAAGAACTGCCTAG 57.097 47.619 0.00 0.00 44.52 3.02
2931 4824 3.119602 CCATGTGCAAGACTGAATGAAGG 60.120 47.826 0.00 0.00 0.00 3.46
2941 4834 2.774439 AACGAAACCATGTGCAAGAC 57.226 45.000 0.00 0.00 0.00 3.01
3072 4965 5.563475 CGGTTCAGAACTGAGAATTTGCATT 60.563 40.000 16.24 0.00 41.13 3.56
3199 5100 9.781834 TTTAATCAAACTTCAGTACACAACAAG 57.218 29.630 0.00 0.00 0.00 3.16
3308 5210 6.417191 TCGTGCTGGTATTTCTTTTCATAC 57.583 37.500 0.00 0.00 0.00 2.39
3368 5270 1.678970 GTTGTCCCACCCATCAGGC 60.679 63.158 0.00 0.00 40.58 4.85
3371 5273 2.033448 GCGTTGTCCCACCCATCA 59.967 61.111 0.00 0.00 0.00 3.07
3373 5275 1.779061 AAGAGCGTTGTCCCACCCAT 61.779 55.000 0.00 0.00 0.00 4.00
3383 5285 1.795286 GAACTCACTGGAAGAGCGTTG 59.205 52.381 0.00 0.00 37.43 4.10
3384 5286 1.270358 GGAACTCACTGGAAGAGCGTT 60.270 52.381 0.00 0.00 37.43 4.84
3386 5288 0.390472 GGGAACTCACTGGAAGAGCG 60.390 60.000 0.00 0.00 37.43 5.03
3404 5306 5.749462 AGAAGACATTTATGGTTCAGAGGG 58.251 41.667 8.76 0.00 31.18 4.30
3477 5383 2.099756 ACTTCTGCAGAACAAACAAGGC 59.900 45.455 25.16 0.00 0.00 4.35
3497 5403 2.772515 AGCAGGACTTTCAGGGGTATAC 59.227 50.000 0.00 0.00 0.00 1.47
3549 5455 7.497249 AGGTATTACTTTAGCAAGAGCATTCAG 59.503 37.037 0.00 0.00 45.49 3.02
3810 5716 7.767659 CACAAAGATCACTCCTGATTCAGATAA 59.232 37.037 15.36 0.00 37.24 1.75
3812 5718 6.070366 TCACAAAGATCACTCCTGATTCAGAT 60.070 38.462 15.36 0.20 37.24 2.90
3851 5757 2.965831 CCCATCTTCTCCAAGTCCGATA 59.034 50.000 0.00 0.00 0.00 2.92
3854 5760 0.462759 GCCCATCTTCTCCAAGTCCG 60.463 60.000 0.00 0.00 0.00 4.79
3899 6666 1.986575 GCATTGCTCGGAGGCTGAAC 61.987 60.000 7.20 0.00 0.00 3.18
4016 7456 2.185608 GGGAGCTTCTGCCGAGAC 59.814 66.667 0.00 0.00 40.80 3.36
4046 7486 1.434555 CAACGCCTTCAACCGATGTA 58.565 50.000 0.00 0.00 0.00 2.29
4100 7540 0.257328 TGAGGTCAGGTTTGTTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
4168 7609 0.615850 CCCCTCCTTCCTCAACTGAC 59.384 60.000 0.00 0.00 0.00 3.51
4295 7736 1.227527 CAGTGTGACACCGGCTTCA 60.228 57.895 12.81 0.12 34.49 3.02
4334 7775 0.171903 CGATTGCTTTGCCCTTCTGG 59.828 55.000 0.00 0.00 37.09 3.86
4795 8510 1.527311 GGACTTTCTTGACGACAGCAC 59.473 52.381 0.00 0.00 0.00 4.40
4903 8889 5.053145 CCTTCCTGAGATTTCATCCTTACG 58.947 45.833 0.00 0.00 31.68 3.18
4906 8892 3.683847 CGCCTTCCTGAGATTTCATCCTT 60.684 47.826 0.00 0.00 31.68 3.36
4950 8936 4.530553 TGGCCGGAATGTATATGACACTAT 59.469 41.667 5.05 0.00 42.17 2.12
4952 8938 2.703536 TGGCCGGAATGTATATGACACT 59.296 45.455 5.05 0.00 42.17 3.55
4991 9141 6.094061 CACTTTGTTTTTCGGAAACCAACTA 58.906 36.000 15.31 8.18 28.51 2.24
4992 9142 4.926832 CACTTTGTTTTTCGGAAACCAACT 59.073 37.500 15.31 3.95 28.51 3.16
4993 9143 4.687018 ACACTTTGTTTTTCGGAAACCAAC 59.313 37.500 0.00 6.85 28.51 3.77
4994 9144 4.884247 ACACTTTGTTTTTCGGAAACCAA 58.116 34.783 1.96 6.66 0.00 3.67
4995 9145 4.522722 ACACTTTGTTTTTCGGAAACCA 57.477 36.364 1.96 0.48 0.00 3.67
4996 9146 5.289193 GGTTACACTTTGTTTTTCGGAAACC 59.711 40.000 1.96 0.00 0.00 3.27
5033 9241 4.713321 TCCCAGGACCATAGTAACTTGTAC 59.287 45.833 0.00 0.00 0.00 2.90
5034 9242 4.950361 TCCCAGGACCATAGTAACTTGTA 58.050 43.478 0.00 0.00 0.00 2.41
5035 9243 3.798515 TCCCAGGACCATAGTAACTTGT 58.201 45.455 0.00 0.00 0.00 3.16
5105 9313 1.448540 CCTTAGCGGCTCCACTGTG 60.449 63.158 5.39 0.00 0.00 3.66
5124 9332 2.751806 GCTTTGGAGGAATTCTCAGTGG 59.248 50.000 5.23 0.00 44.19 4.00
5142 9350 2.548178 CTGTCGAATGGTGCAGCTT 58.452 52.632 18.08 8.10 0.00 3.74
5279 9487 2.034685 ACGACGACACCTATGATGATGG 59.965 50.000 0.00 0.00 0.00 3.51
5346 9563 4.547905 ACGATGAGTACGGCGGCG 62.548 66.667 31.06 31.06 34.93 6.46
5347 9564 2.654404 GACGATGAGTACGGCGGC 60.654 66.667 13.24 0.00 34.93 6.53
5348 9565 1.298413 CTGACGATGAGTACGGCGG 60.298 63.158 13.24 0.00 42.10 6.13
5349 9566 0.316278 CTCTGACGATGAGTACGGCG 60.316 60.000 4.80 4.80 42.10 6.46
5350 9567 0.592754 GCTCTGACGATGAGTACGGC 60.593 60.000 0.00 0.00 39.41 5.68
5351 9568 0.733150 TGCTCTGACGATGAGTACGG 59.267 55.000 0.00 0.00 34.30 4.02
5352 9569 1.398739 ACTGCTCTGACGATGAGTACG 59.601 52.381 0.00 0.00 34.30 3.67
5353 9570 4.035792 ACATACTGCTCTGACGATGAGTAC 59.964 45.833 0.00 0.00 34.30 2.73
5354 9571 4.200092 ACATACTGCTCTGACGATGAGTA 58.800 43.478 0.00 0.00 34.30 2.59
5369 9586 5.518128 CCGAGACATTGAAGAAGACATACTG 59.482 44.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.