Multiple sequence alignment - TraesCS2D01G073500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G073500 chr2D 100.000 4127 0 0 1 4127 30786028 30790154 0.000000e+00 7622
1 TraesCS2D01G073500 chr2D 98.257 746 11 2 1 745 30777358 30778102 0.000000e+00 1304
2 TraesCS2D01G073500 chr2D 100.000 685 0 0 3443 4127 9253342 9254026 0.000000e+00 1266
3 TraesCS2D01G073500 chr2D 96.242 745 26 2 2 745 53480720 53481463 0.000000e+00 1219
4 TraesCS2D01G073500 chr2D 93.984 748 37 7 2 745 108756591 108755848 0.000000e+00 1125
5 TraesCS2D01G073500 chr2A 95.805 2026 46 10 1363 3358 33054183 33056199 0.000000e+00 3234
6 TraesCS2D01G073500 chr2A 87.196 453 20 14 931 1359 33053709 33054147 8.020000e-132 481
7 TraesCS2D01G073500 chr2A 93.514 185 6 2 734 918 33053219 33053397 1.890000e-68 270
8 TraesCS2D01G073500 chr6D 100.000 685 0 0 3443 4127 9960131 9960815 0.000000e+00 1266
9 TraesCS2D01G073500 chr6D 80.441 1452 264 17 1548 2992 14618752 14620190 0.000000e+00 1090
10 TraesCS2D01G073500 chr6D 79.635 1478 271 24 1528 2992 14680753 14679293 0.000000e+00 1035
11 TraesCS2D01G073500 chr5D 100.000 685 0 0 3443 4127 58662979 58662295 0.000000e+00 1266
12 TraesCS2D01G073500 chr5D 100.000 685 0 0 3443 4127 172016763 172017447 0.000000e+00 1266
13 TraesCS2D01G073500 chr5D 99.854 684 1 0 3444 4127 214356234 214356917 0.000000e+00 1258
14 TraesCS2D01G073500 chr4D 97.319 746 18 2 1 745 449642239 449642983 0.000000e+00 1266
15 TraesCS2D01G073500 chr4D 99.270 685 5 0 3443 4127 44041913 44042597 0.000000e+00 1238
16 TraesCS2D01G073500 chr4D 93.591 749 40 7 1 745 21208999 21209743 0.000000e+00 1110
17 TraesCS2D01G073500 chr1D 97.047 745 18 3 2 745 451083389 451084130 0.000000e+00 1251
18 TraesCS2D01G073500 chr1D 100.000 675 0 0 3453 4127 397634361 397635035 0.000000e+00 1247
19 TraesCS2D01G073500 chr1D 100.000 674 0 0 3454 4127 432548426 432549099 0.000000e+00 1245
20 TraesCS2D01G073500 chrUn 100.000 675 0 0 3453 4127 126794672 126795346 0.000000e+00 1247
21 TraesCS2D01G073500 chr7D 96.113 746 26 3 2 745 177066442 177065698 0.000000e+00 1214
22 TraesCS2D01G073500 chr7D 94.779 747 35 4 1 745 540747403 540746659 0.000000e+00 1160
23 TraesCS2D01G073500 chr6B 81.087 1454 251 20 1548 2992 26591161 26592599 0.000000e+00 1140
24 TraesCS2D01G073500 chr6B 79.656 1455 270 22 1548 2992 26634748 26633310 0.000000e+00 1024
25 TraesCS2D01G073500 chr6B 79.450 1455 273 22 1548 2992 26597731 26596293 0.000000e+00 1007
26 TraesCS2D01G073500 chr6A 80.785 1452 259 17 1548 2992 15782578 15781140 0.000000e+00 1118
27 TraesCS2D01G073500 chr6A 79.553 1477 272 24 1528 2991 15727866 15729325 0.000000e+00 1027
28 TraesCS2D01G073500 chr6A 78.794 1476 287 22 1528 2992 15747637 15749097 0.000000e+00 968
29 TraesCS2D01G073500 chr3D 93.591 749 40 7 1 745 125593084 125593828 0.000000e+00 1110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G073500 chr2D 30786028 30790154 4126 False 7622.000000 7622 100.000000 1 4127 1 chr2D.!!$F3 4126
1 TraesCS2D01G073500 chr2D 30777358 30778102 744 False 1304.000000 1304 98.257000 1 745 1 chr2D.!!$F2 744
2 TraesCS2D01G073500 chr2D 9253342 9254026 684 False 1266.000000 1266 100.000000 3443 4127 1 chr2D.!!$F1 684
3 TraesCS2D01G073500 chr2D 53480720 53481463 743 False 1219.000000 1219 96.242000 2 745 1 chr2D.!!$F4 743
4 TraesCS2D01G073500 chr2D 108755848 108756591 743 True 1125.000000 1125 93.984000 2 745 1 chr2D.!!$R1 743
5 TraesCS2D01G073500 chr2A 33053219 33056199 2980 False 1328.333333 3234 92.171667 734 3358 3 chr2A.!!$F1 2624
6 TraesCS2D01G073500 chr6D 9960131 9960815 684 False 1266.000000 1266 100.000000 3443 4127 1 chr6D.!!$F1 684
7 TraesCS2D01G073500 chr6D 14618752 14620190 1438 False 1090.000000 1090 80.441000 1548 2992 1 chr6D.!!$F2 1444
8 TraesCS2D01G073500 chr6D 14679293 14680753 1460 True 1035.000000 1035 79.635000 1528 2992 1 chr6D.!!$R1 1464
9 TraesCS2D01G073500 chr5D 58662295 58662979 684 True 1266.000000 1266 100.000000 3443 4127 1 chr5D.!!$R1 684
10 TraesCS2D01G073500 chr5D 172016763 172017447 684 False 1266.000000 1266 100.000000 3443 4127 1 chr5D.!!$F1 684
11 TraesCS2D01G073500 chr5D 214356234 214356917 683 False 1258.000000 1258 99.854000 3444 4127 1 chr5D.!!$F2 683
12 TraesCS2D01G073500 chr4D 449642239 449642983 744 False 1266.000000 1266 97.319000 1 745 1 chr4D.!!$F3 744
13 TraesCS2D01G073500 chr4D 44041913 44042597 684 False 1238.000000 1238 99.270000 3443 4127 1 chr4D.!!$F2 684
14 TraesCS2D01G073500 chr4D 21208999 21209743 744 False 1110.000000 1110 93.591000 1 745 1 chr4D.!!$F1 744
15 TraesCS2D01G073500 chr1D 451083389 451084130 741 False 1251.000000 1251 97.047000 2 745 1 chr1D.!!$F3 743
16 TraesCS2D01G073500 chr1D 397634361 397635035 674 False 1247.000000 1247 100.000000 3453 4127 1 chr1D.!!$F1 674
17 TraesCS2D01G073500 chr1D 432548426 432549099 673 False 1245.000000 1245 100.000000 3454 4127 1 chr1D.!!$F2 673
18 TraesCS2D01G073500 chrUn 126794672 126795346 674 False 1247.000000 1247 100.000000 3453 4127 1 chrUn.!!$F1 674
19 TraesCS2D01G073500 chr7D 177065698 177066442 744 True 1214.000000 1214 96.113000 2 745 1 chr7D.!!$R1 743
20 TraesCS2D01G073500 chr7D 540746659 540747403 744 True 1160.000000 1160 94.779000 1 745 1 chr7D.!!$R2 744
21 TraesCS2D01G073500 chr6B 26591161 26592599 1438 False 1140.000000 1140 81.087000 1548 2992 1 chr6B.!!$F1 1444
22 TraesCS2D01G073500 chr6B 26633310 26634748 1438 True 1024.000000 1024 79.656000 1548 2992 1 chr6B.!!$R2 1444
23 TraesCS2D01G073500 chr6B 26596293 26597731 1438 True 1007.000000 1007 79.450000 1548 2992 1 chr6B.!!$R1 1444
24 TraesCS2D01G073500 chr6A 15781140 15782578 1438 True 1118.000000 1118 80.785000 1548 2992 1 chr6A.!!$R1 1444
25 TraesCS2D01G073500 chr6A 15727866 15729325 1459 False 1027.000000 1027 79.553000 1528 2991 1 chr6A.!!$F1 1463
26 TraesCS2D01G073500 chr6A 15747637 15749097 1460 False 968.000000 968 78.794000 1528 2992 1 chr6A.!!$F2 1464
27 TraesCS2D01G073500 chr3D 125593084 125593828 744 False 1110.000000 1110 93.591000 1 745 1 chr3D.!!$F1 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 1254 1.068541 TGTTGACAGGTCACGATCTCG 60.069 52.381 0.77 0.00 46.33 4.04 F
1653 2018 0.179062 CTCCTGGATGGCCTTCTTCG 60.179 60.000 17.48 6.92 35.26 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2331 2696 0.241749 TACTCGGCGATGACGTTGTT 59.758 50.0 11.27 0.0 41.98 2.83 R
3377 3765 0.250124 CCAGCCTCACACCAACGTTA 60.250 55.0 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.397831 GTTTGCGTGTATGATTAGTGTACA 57.602 37.500 0.00 0.00 0.00 2.90
155 157 4.627801 TTGTGCGGCTTACGGGCA 62.628 61.111 0.00 0.00 44.51 5.36
439 441 7.986889 ACTACATGCAGTTGTCATTCATACATA 59.013 33.333 0.00 0.00 30.13 2.29
460 462 4.287766 ACATCCCTAGTTGGTCTTGTTC 57.712 45.455 0.00 0.00 0.00 3.18
781 786 2.072874 ATCTTGTGCCACCAGCCTGT 62.073 55.000 0.00 0.00 42.71 4.00
789 794 1.294780 CACCAGCCTGTCCACTCTC 59.705 63.158 0.00 0.00 0.00 3.20
803 808 5.154932 GTCCACTCTCCGTGATTTATATCG 58.845 45.833 0.00 0.00 46.81 2.92
808 813 7.309177 CACTCTCCGTGATTTATATCGAATCT 58.691 38.462 11.08 0.00 46.81 2.40
809 814 8.451748 CACTCTCCGTGATTTATATCGAATCTA 58.548 37.037 11.08 0.00 46.81 1.98
810 815 9.179909 ACTCTCCGTGATTTATATCGAATCTAT 57.820 33.333 11.08 0.00 35.15 1.98
879 884 5.423610 AGCAGTAAGATGTTCATAGTGGAGT 59.576 40.000 0.00 0.00 0.00 3.85
880 885 6.607600 AGCAGTAAGATGTTCATAGTGGAGTA 59.392 38.462 0.00 0.00 0.00 2.59
881 886 6.697892 GCAGTAAGATGTTCATAGTGGAGTAC 59.302 42.308 0.00 0.00 0.00 2.73
891 896 7.390440 TGTTCATAGTGGAGTACTCATTTTTGG 59.610 37.037 23.91 7.99 40.89 3.28
928 933 4.672587 AGCCGAGCTAAAGTATGATTCA 57.327 40.909 0.00 0.00 36.99 2.57
929 934 4.372656 AGCCGAGCTAAAGTATGATTCAC 58.627 43.478 0.00 0.00 36.99 3.18
950 1254 1.068541 TGTTGACAGGTCACGATCTCG 60.069 52.381 0.77 0.00 46.33 4.04
968 1272 1.069204 TCGAGCTTTCTTGACAGCACT 59.931 47.619 10.77 0.00 38.61 4.40
969 1273 2.296190 TCGAGCTTTCTTGACAGCACTA 59.704 45.455 10.77 0.00 38.61 2.74
970 1274 3.056536 TCGAGCTTTCTTGACAGCACTAT 60.057 43.478 10.77 0.00 38.61 2.12
971 1275 4.157840 TCGAGCTTTCTTGACAGCACTATA 59.842 41.667 10.77 0.00 38.61 1.31
1011 1315 4.697352 ACTCTTATGTGCAATCAACAGACC 59.303 41.667 0.00 0.00 0.00 3.85
1040 1344 2.497107 AGCGAATAATGCCAACATGC 57.503 45.000 0.00 0.00 36.36 4.06
1041 1345 1.750206 AGCGAATAATGCCAACATGCA 59.250 42.857 0.00 0.00 46.94 3.96
1055 1359 3.011949 ACATGCATGGTTTTCGTCAAC 57.988 42.857 29.41 0.00 0.00 3.18
1065 1369 8.868916 GCATGGTTTTCGTCAACAAAAATATAT 58.131 29.630 0.00 0.00 0.00 0.86
1089 1394 4.610333 AGTACCCTCACTACATCATGTGA 58.390 43.478 0.00 0.00 40.39 3.58
1141 1450 9.996554 TCGATAGGAATCAAAGCTTAATCATAA 57.003 29.630 0.00 0.00 31.93 1.90
1154 1463 8.682936 AGCTTAATCATAATGACTTAACTGGG 57.317 34.615 0.00 0.00 0.00 4.45
1155 1464 7.229506 AGCTTAATCATAATGACTTAACTGGGC 59.770 37.037 0.00 0.00 0.00 5.36
1156 1465 7.013274 GCTTAATCATAATGACTTAACTGGGCA 59.987 37.037 0.00 0.00 0.00 5.36
1157 1466 8.995027 TTAATCATAATGACTTAACTGGGCAT 57.005 30.769 0.00 0.00 0.00 4.40
1223 1532 3.003480 GCAAGTTGCCAAGTAGAGTAGG 58.997 50.000 17.36 0.00 37.42 3.18
1224 1533 3.557264 GCAAGTTGCCAAGTAGAGTAGGT 60.557 47.826 17.36 0.00 37.42 3.08
1225 1534 4.246458 CAAGTTGCCAAGTAGAGTAGGTC 58.754 47.826 0.00 0.00 0.00 3.85
1227 1536 2.490903 GTTGCCAAGTAGAGTAGGTCGA 59.509 50.000 0.00 0.00 0.00 4.20
1228 1537 3.014304 TGCCAAGTAGAGTAGGTCGAT 57.986 47.619 0.00 0.00 0.00 3.59
1229 1538 3.362706 TGCCAAGTAGAGTAGGTCGATT 58.637 45.455 0.00 0.00 0.00 3.34
1263 1579 8.851145 TCACAGAGACTTGGTATATATTCTGAC 58.149 37.037 11.81 0.00 35.84 3.51
1329 1655 9.788960 GAATTTCCTATTTTAGATTCAACGCTT 57.211 29.630 0.00 0.00 0.00 4.68
1333 1659 6.761714 TCCTATTTTAGATTCAACGCTTCCTC 59.238 38.462 0.00 0.00 0.00 3.71
1334 1660 4.921470 TTTTAGATTCAACGCTTCCTCG 57.079 40.909 0.00 0.00 0.00 4.63
1359 1685 7.534239 CGAGTCTTAAACTAAAATCAAAGCCAC 59.466 37.037 0.00 0.00 38.74 5.01
1360 1686 8.465273 AGTCTTAAACTAAAATCAAAGCCACT 57.535 30.769 0.00 0.00 36.07 4.00
1361 1687 8.568794 AGTCTTAAACTAAAATCAAAGCCACTC 58.431 33.333 0.00 0.00 36.07 3.51
1384 1742 4.150274 CGATCATGAATGAAGCTAGCACTC 59.850 45.833 18.83 13.37 40.69 3.51
1408 1766 1.154150 GATGTCAACGCTTGCCTGC 60.154 57.895 0.00 0.00 0.00 4.85
1409 1767 1.855213 GATGTCAACGCTTGCCTGCA 61.855 55.000 0.00 0.00 0.00 4.41
1445 1803 3.944087 ACTAGCAAACAGAAGTGGGATC 58.056 45.455 0.00 0.00 0.00 3.36
1446 1804 2.206576 AGCAAACAGAAGTGGGATCC 57.793 50.000 1.92 1.92 0.00 3.36
1447 1805 1.425066 AGCAAACAGAAGTGGGATCCA 59.575 47.619 15.23 0.00 0.00 3.41
1448 1806 2.158475 AGCAAACAGAAGTGGGATCCAA 60.158 45.455 15.23 0.00 34.18 3.53
1449 1807 2.827921 GCAAACAGAAGTGGGATCCAAT 59.172 45.455 15.23 0.00 34.18 3.16
1450 1808 3.259123 GCAAACAGAAGTGGGATCCAATT 59.741 43.478 15.23 5.34 44.77 2.32
1461 1819 2.167075 GGGATCCAATTCCAAAGCACAG 59.833 50.000 15.23 0.00 37.53 3.66
1557 1922 2.409870 GCCAAGATGTTCCCGCTGG 61.410 63.158 0.00 0.00 0.00 4.85
1653 2018 0.179062 CTCCTGGATGGCCTTCTTCG 60.179 60.000 17.48 6.92 35.26 3.79
2150 2515 1.154599 CACGCTGCACATTGTCGTC 60.155 57.895 0.00 0.00 0.00 4.20
2331 2696 4.724602 GCGTCGAGCTCTGCACCA 62.725 66.667 12.85 0.00 44.04 4.17
2414 2779 3.435186 GCCGCCAGCTTTGGACTC 61.435 66.667 0.00 0.00 38.99 3.36
2732 3097 0.036022 ACCAGCTGCTCTTCTTCACC 59.964 55.000 8.66 0.00 0.00 4.02
3021 3386 4.338964 CCAACCAGCATGCATGAGTATTTA 59.661 41.667 30.64 0.00 31.97 1.40
3038 3403 8.739039 TGAGTATTTAGGTTGGATTGAAATGTG 58.261 33.333 0.00 0.00 0.00 3.21
3047 3412 4.387598 TGGATTGAAATGTGCCCAAAAAG 58.612 39.130 0.00 0.00 0.00 2.27
3055 3420 1.344114 TGTGCCCAAAAAGAAGGATGC 59.656 47.619 0.00 0.00 0.00 3.91
3082 3447 1.825090 TGGTCAACTAGCAATGGCAG 58.175 50.000 0.00 0.00 44.61 4.85
3086 3451 3.947834 GGTCAACTAGCAATGGCAGTATT 59.052 43.478 0.00 0.00 44.61 1.89
3087 3452 5.123227 GGTCAACTAGCAATGGCAGTATTA 58.877 41.667 0.00 0.00 44.61 0.98
3129 3501 9.788960 AAGATCCTTTCTTTTATCATTAAACGC 57.211 29.630 0.00 0.00 42.15 4.84
3191 3571 6.695713 GTGAATTTCAGGTCCTTGTTTAACAC 59.304 38.462 0.00 0.00 0.00 3.32
3249 3629 4.207891 TGATGTGGGAAGTCTAAGAAGC 57.792 45.455 0.00 0.00 0.00 3.86
3250 3630 3.582647 TGATGTGGGAAGTCTAAGAAGCA 59.417 43.478 0.00 0.00 0.00 3.91
3251 3631 3.402628 TGTGGGAAGTCTAAGAAGCAC 57.597 47.619 0.00 0.00 0.00 4.40
3265 3653 7.488471 GTCTAAGAAGCACGTACAACTATGAAT 59.512 37.037 0.00 0.00 0.00 2.57
3266 3654 6.408858 AAGAAGCACGTACAACTATGAATG 57.591 37.500 0.00 0.00 0.00 2.67
3338 3726 8.654215 CAATCCTCATGATATTATGTGAAGTCG 58.346 37.037 10.24 0.00 31.83 4.18
3358 3746 0.817013 ACCGCACCAATATTTGCCTG 59.183 50.000 6.55 1.96 35.14 4.85
3359 3747 0.528249 CCGCACCAATATTTGCCTGC 60.528 55.000 6.55 0.52 35.14 4.85
3360 3748 0.173029 CGCACCAATATTTGCCTGCA 59.827 50.000 6.55 0.00 35.14 4.41
3361 3749 1.799917 CGCACCAATATTTGCCTGCAG 60.800 52.381 6.78 6.78 35.14 4.41
3362 3750 1.472026 GCACCAATATTTGCCTGCAGG 60.472 52.381 29.34 29.34 34.64 4.85
3363 3751 2.101783 CACCAATATTTGCCTGCAGGA 58.898 47.619 37.21 16.68 37.39 3.86
3364 3752 2.102578 ACCAATATTTGCCTGCAGGAC 58.897 47.619 37.21 25.98 37.39 3.85
3365 3753 2.101783 CCAATATTTGCCTGCAGGACA 58.898 47.619 37.21 28.21 37.39 4.02
3366 3754 2.696707 CCAATATTTGCCTGCAGGACAT 59.303 45.455 37.21 23.95 37.39 3.06
3367 3755 3.491964 CCAATATTTGCCTGCAGGACATG 60.492 47.826 37.21 23.49 37.39 3.21
3368 3756 2.804986 TATTTGCCTGCAGGACATGA 57.195 45.000 37.21 22.00 37.39 3.07
3369 3757 1.927487 ATTTGCCTGCAGGACATGAA 58.073 45.000 37.21 22.69 37.39 2.57
3370 3758 1.927487 TTTGCCTGCAGGACATGAAT 58.073 45.000 37.21 0.00 37.39 2.57
3371 3759 1.179152 TTGCCTGCAGGACATGAATG 58.821 50.000 37.21 6.70 37.39 2.67
3372 3760 1.317431 TGCCTGCAGGACATGAATGC 61.317 55.000 37.21 17.34 40.40 3.56
3373 3761 1.035932 GCCTGCAGGACATGAATGCT 61.036 55.000 37.21 0.00 40.62 3.79
3374 3762 1.471119 CCTGCAGGACATGAATGCTT 58.529 50.000 29.88 0.00 40.62 3.91
3375 3763 1.134367 CCTGCAGGACATGAATGCTTG 59.866 52.381 29.88 12.22 40.62 4.01
3376 3764 1.816835 CTGCAGGACATGAATGCTTGT 59.183 47.619 5.57 0.00 40.62 3.16
3377 3765 2.230508 CTGCAGGACATGAATGCTTGTT 59.769 45.455 5.57 0.00 40.62 2.83
3378 3766 3.419943 TGCAGGACATGAATGCTTGTTA 58.580 40.909 17.73 0.80 40.62 2.41
3379 3767 3.825585 TGCAGGACATGAATGCTTGTTAA 59.174 39.130 17.73 0.25 40.62 2.01
3380 3768 4.168760 GCAGGACATGAATGCTTGTTAAC 58.831 43.478 0.00 0.00 37.00 2.01
3381 3769 4.406069 CAGGACATGAATGCTTGTTAACG 58.594 43.478 0.00 0.00 33.10 3.18
3382 3770 4.072131 AGGACATGAATGCTTGTTAACGT 58.928 39.130 0.00 0.00 33.10 3.99
3383 3771 4.518970 AGGACATGAATGCTTGTTAACGTT 59.481 37.500 5.88 5.88 33.10 3.99
3384 3772 4.616802 GGACATGAATGCTTGTTAACGTTG 59.383 41.667 11.99 0.00 33.10 4.10
3385 3773 4.545610 ACATGAATGCTTGTTAACGTTGG 58.454 39.130 11.99 0.00 0.00 3.77
3386 3774 4.037446 ACATGAATGCTTGTTAACGTTGGT 59.963 37.500 11.99 0.00 0.00 3.67
3387 3775 3.958704 TGAATGCTTGTTAACGTTGGTG 58.041 40.909 11.99 0.00 0.00 4.17
3388 3776 3.378742 TGAATGCTTGTTAACGTTGGTGT 59.621 39.130 11.99 0.00 0.00 4.16
3389 3777 2.834574 TGCTTGTTAACGTTGGTGTG 57.165 45.000 11.99 0.00 0.00 3.82
3390 3778 2.357075 TGCTTGTTAACGTTGGTGTGA 58.643 42.857 11.99 0.00 0.00 3.58
3391 3779 2.353269 TGCTTGTTAACGTTGGTGTGAG 59.647 45.455 11.99 2.73 0.00 3.51
3392 3780 2.286772 GCTTGTTAACGTTGGTGTGAGG 60.287 50.000 11.99 0.00 0.00 3.86
3393 3781 1.301423 TGTTAACGTTGGTGTGAGGC 58.699 50.000 11.99 0.00 0.00 4.70
3394 3782 1.134340 TGTTAACGTTGGTGTGAGGCT 60.134 47.619 11.99 0.00 0.00 4.58
3395 3783 1.263217 GTTAACGTTGGTGTGAGGCTG 59.737 52.381 11.99 0.00 0.00 4.85
3396 3784 0.250124 TAACGTTGGTGTGAGGCTGG 60.250 55.000 11.99 0.00 0.00 4.85
3397 3785 2.669569 CGTTGGTGTGAGGCTGGG 60.670 66.667 0.00 0.00 0.00 4.45
3398 3786 2.282462 GTTGGTGTGAGGCTGGGG 60.282 66.667 0.00 0.00 0.00 4.96
3399 3787 2.776526 TTGGTGTGAGGCTGGGGT 60.777 61.111 0.00 0.00 0.00 4.95
3400 3788 2.391130 TTGGTGTGAGGCTGGGGTT 61.391 57.895 0.00 0.00 0.00 4.11
3401 3789 1.063070 TTGGTGTGAGGCTGGGGTTA 61.063 55.000 0.00 0.00 0.00 2.85
3402 3790 0.844661 TGGTGTGAGGCTGGGGTTAT 60.845 55.000 0.00 0.00 0.00 1.89
3403 3791 0.331616 GGTGTGAGGCTGGGGTTATT 59.668 55.000 0.00 0.00 0.00 1.40
3404 3792 1.463674 GTGTGAGGCTGGGGTTATTG 58.536 55.000 0.00 0.00 0.00 1.90
3405 3793 1.004277 GTGTGAGGCTGGGGTTATTGA 59.996 52.381 0.00 0.00 0.00 2.57
3406 3794 1.922447 TGTGAGGCTGGGGTTATTGAT 59.078 47.619 0.00 0.00 0.00 2.57
3407 3795 2.092429 TGTGAGGCTGGGGTTATTGATC 60.092 50.000 0.00 0.00 0.00 2.92
3408 3796 1.140852 TGAGGCTGGGGTTATTGATCG 59.859 52.381 0.00 0.00 0.00 3.69
3409 3797 0.474184 AGGCTGGGGTTATTGATCGG 59.526 55.000 0.00 0.00 0.00 4.18
3410 3798 0.472471 GGCTGGGGTTATTGATCGGA 59.528 55.000 0.00 0.00 0.00 4.55
3411 3799 1.073923 GGCTGGGGTTATTGATCGGAT 59.926 52.381 0.00 0.00 0.00 4.18
3412 3800 2.427506 GCTGGGGTTATTGATCGGATC 58.572 52.381 11.07 11.07 0.00 3.36
3413 3801 2.224523 GCTGGGGTTATTGATCGGATCA 60.225 50.000 16.44 16.44 37.55 2.92
3414 3802 3.560025 GCTGGGGTTATTGATCGGATCAT 60.560 47.826 20.53 13.08 39.39 2.45
3415 3803 4.323485 GCTGGGGTTATTGATCGGATCATA 60.323 45.833 20.53 12.16 39.39 2.15
3416 3804 5.160607 TGGGGTTATTGATCGGATCATAC 57.839 43.478 20.53 17.10 39.39 2.39
3417 3805 4.181578 GGGGTTATTGATCGGATCATACG 58.818 47.826 20.53 0.00 39.39 3.06
3418 3806 4.181578 GGGTTATTGATCGGATCATACGG 58.818 47.826 20.53 0.00 39.39 4.02
3419 3807 4.322499 GGGTTATTGATCGGATCATACGGT 60.322 45.833 20.53 8.13 39.39 4.83
3420 3808 4.625742 GGTTATTGATCGGATCATACGGTG 59.374 45.833 20.53 0.00 39.39 4.94
3421 3809 5.466819 GTTATTGATCGGATCATACGGTGA 58.533 41.667 20.53 5.22 39.39 4.02
3422 3810 3.364889 TTGATCGGATCATACGGTGAC 57.635 47.619 20.53 0.00 40.28 3.67
3423 3811 2.303175 TGATCGGATCATACGGTGACA 58.697 47.619 16.44 0.00 40.28 3.58
3424 3812 2.034179 TGATCGGATCATACGGTGACAC 59.966 50.000 16.44 0.00 40.28 3.67
3425 3813 1.758936 TCGGATCATACGGTGACACT 58.241 50.000 5.39 0.00 40.28 3.55
3426 3814 2.921821 TCGGATCATACGGTGACACTA 58.078 47.619 5.39 0.00 40.28 2.74
3427 3815 3.281158 TCGGATCATACGGTGACACTAA 58.719 45.455 5.39 0.00 40.28 2.24
3428 3816 3.314357 TCGGATCATACGGTGACACTAAG 59.686 47.826 5.39 0.40 40.28 2.18
3429 3817 3.066342 CGGATCATACGGTGACACTAAGT 59.934 47.826 5.39 6.37 40.28 2.24
3430 3818 4.274214 CGGATCATACGGTGACACTAAGTA 59.726 45.833 5.39 8.28 40.28 2.24
3431 3819 5.560375 CGGATCATACGGTGACACTAAGTAG 60.560 48.000 5.39 3.60 40.28 2.57
3432 3820 5.298777 GGATCATACGGTGACACTAAGTAGT 59.701 44.000 5.39 0.06 40.28 2.73
3433 3821 5.808042 TCATACGGTGACACTAAGTAGTC 57.192 43.478 5.39 0.00 33.46 2.59
3434 3822 5.494724 TCATACGGTGACACTAAGTAGTCT 58.505 41.667 5.39 0.00 35.81 3.24
3435 3823 5.583854 TCATACGGTGACACTAAGTAGTCTC 59.416 44.000 5.39 0.00 35.81 3.36
3436 3824 4.018484 ACGGTGACACTAAGTAGTCTCT 57.982 45.455 5.39 0.00 35.81 3.10
3437 3825 4.002316 ACGGTGACACTAAGTAGTCTCTC 58.998 47.826 5.39 0.00 35.81 3.20
3438 3826 3.374678 CGGTGACACTAAGTAGTCTCTCC 59.625 52.174 5.39 5.31 33.98 3.71
3439 3827 3.695556 GGTGACACTAAGTAGTCTCTCCC 59.304 52.174 5.39 0.00 32.33 4.30
3440 3828 4.568169 GGTGACACTAAGTAGTCTCTCCCT 60.568 50.000 5.39 0.00 32.33 4.20
3441 3829 4.396790 GTGACACTAAGTAGTCTCTCCCTG 59.603 50.000 0.00 0.00 35.81 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.267961 GACGCCCCCGATTTGACT 59.732 61.111 0.00 0.00 38.29 3.41
439 441 3.910627 AGAACAAGACCAACTAGGGATGT 59.089 43.478 0.00 0.00 43.89 3.06
460 462 5.919141 CGAGTATTTCGGGGTATCTTGTAAG 59.081 44.000 0.00 0.00 45.54 2.34
827 832 6.705381 AGCTGTATCTAGCAATAAAGCTTCTG 59.295 38.462 9.40 0.00 46.24 3.02
833 838 6.481313 TGCTTCAGCTGTATCTAGCAATAAAG 59.519 38.462 14.67 6.12 46.07 1.85
879 884 4.097741 CGGGATCATTGCCAAAAATGAGTA 59.902 41.667 5.89 0.00 46.73 2.59
880 885 3.119029 CGGGATCATTGCCAAAAATGAGT 60.119 43.478 5.89 0.00 46.73 3.41
881 886 3.130869 TCGGGATCATTGCCAAAAATGAG 59.869 43.478 5.89 0.00 46.73 2.90
891 896 0.952984 GGCTAGCTCGGGATCATTGC 60.953 60.000 15.72 0.00 0.00 3.56
918 923 5.012046 TGACCTGTCAACAGTGAATCATACT 59.988 40.000 9.19 0.00 42.27 2.12
920 925 5.237815 GTGACCTGTCAACAGTGAATCATA 58.762 41.667 9.19 0.00 41.85 2.15
921 926 4.067896 GTGACCTGTCAACAGTGAATCAT 58.932 43.478 9.19 0.00 41.85 2.45
923 928 2.476619 CGTGACCTGTCAACAGTGAATC 59.523 50.000 9.19 2.68 41.85 2.52
924 929 2.102420 TCGTGACCTGTCAACAGTGAAT 59.898 45.455 9.19 0.00 41.85 2.57
927 932 2.061773 GATCGTGACCTGTCAACAGTG 58.938 52.381 9.19 3.78 41.85 3.66
928 933 1.964223 AGATCGTGACCTGTCAACAGT 59.036 47.619 9.19 0.00 41.85 3.55
929 934 2.600731 GAGATCGTGACCTGTCAACAG 58.399 52.381 0.75 3.08 41.85 3.16
947 1251 1.458827 GTGCTGTCAAGAAAGCTCGAG 59.541 52.381 8.45 8.45 40.21 4.04
950 1254 9.134734 GTATATATAGTGCTGTCAAGAAAGCTC 57.865 37.037 13.05 9.58 40.21 4.09
994 1298 4.877378 ATTTGGTCTGTTGATTGCACAT 57.123 36.364 0.00 0.00 0.00 3.21
1011 1315 8.503196 TGTTGGCATTATTCGCTACTATATTTG 58.497 33.333 0.00 0.00 0.00 2.32
1065 1369 6.192044 TCACATGATGTAGTGAGGGTACTTA 58.808 40.000 0.00 0.00 39.65 2.24
1066 1370 5.023452 TCACATGATGTAGTGAGGGTACTT 58.977 41.667 0.00 0.00 39.65 2.24
1067 1371 4.610333 TCACATGATGTAGTGAGGGTACT 58.390 43.478 0.00 0.00 39.65 2.73
1068 1372 5.537300 ATCACATGATGTAGTGAGGGTAC 57.463 43.478 0.00 0.00 46.70 3.34
1069 1373 6.610830 TCTATCACATGATGTAGTGAGGGTA 58.389 40.000 0.00 0.00 46.70 3.69
1070 1374 5.458595 TCTATCACATGATGTAGTGAGGGT 58.541 41.667 0.00 0.00 46.70 4.34
1089 1394 5.678583 AGTGCACTGCATGATTACTTCTAT 58.321 37.500 20.97 0.00 41.91 1.98
1137 1446 4.338964 TGCATGCCCAGTTAAGTCATTATG 59.661 41.667 16.68 0.00 0.00 1.90
1141 1450 2.493278 GTTGCATGCCCAGTTAAGTCAT 59.507 45.455 16.68 0.00 0.00 3.06
1152 1461 0.825010 CCTATCAGGGTTGCATGCCC 60.825 60.000 16.68 16.67 46.43 5.36
1154 1463 1.312815 GACCTATCAGGGTTGCATGC 58.687 55.000 11.82 11.82 40.58 4.06
1155 1464 1.811558 CGGACCTATCAGGGTTGCATG 60.812 57.143 0.00 0.00 40.58 4.06
1156 1465 0.469917 CGGACCTATCAGGGTTGCAT 59.530 55.000 0.00 0.00 40.58 3.96
1157 1466 0.616395 TCGGACCTATCAGGGTTGCA 60.616 55.000 0.00 0.00 40.58 4.08
1183 1492 7.186021 ACTTGCACAAAATGTAGTAGTGTAC 57.814 36.000 0.00 0.00 32.99 2.90
1329 1655 9.204570 CTTTGATTTTAGTTTAAGACTCGAGGA 57.795 33.333 18.41 0.00 39.86 3.71
1333 1659 7.534239 GTGGCTTTGATTTTAGTTTAAGACTCG 59.466 37.037 0.00 0.00 39.86 4.18
1334 1660 8.568794 AGTGGCTTTGATTTTAGTTTAAGACTC 58.431 33.333 0.00 0.00 39.86 3.36
1359 1685 4.150274 GTGCTAGCTTCATTCATGATCGAG 59.850 45.833 17.23 0.00 36.56 4.04
1360 1686 4.053983 GTGCTAGCTTCATTCATGATCGA 58.946 43.478 17.23 0.00 36.56 3.59
1361 1687 4.056740 AGTGCTAGCTTCATTCATGATCG 58.943 43.478 17.23 0.00 36.56 3.69
1445 1803 1.962807 TGGTCTGTGCTTTGGAATTGG 59.037 47.619 0.00 0.00 0.00 3.16
1446 1804 2.288395 GGTGGTCTGTGCTTTGGAATTG 60.288 50.000 0.00 0.00 0.00 2.32
1447 1805 1.963515 GGTGGTCTGTGCTTTGGAATT 59.036 47.619 0.00 0.00 0.00 2.17
1448 1806 1.133513 TGGTGGTCTGTGCTTTGGAAT 60.134 47.619 0.00 0.00 0.00 3.01
1449 1807 0.257328 TGGTGGTCTGTGCTTTGGAA 59.743 50.000 0.00 0.00 0.00 3.53
1450 1808 0.478072 ATGGTGGTCTGTGCTTTGGA 59.522 50.000 0.00 0.00 0.00 3.53
1451 1809 2.086869 CTATGGTGGTCTGTGCTTTGG 58.913 52.381 0.00 0.00 0.00 3.28
1461 1819 0.249238 CGAGCTCTGCTATGGTGGTC 60.249 60.000 12.85 0.00 39.88 4.02
1494 1852 6.656693 TCCATTTTCTCCATCTGTTTCTTCTC 59.343 38.462 0.00 0.00 0.00 2.87
1557 1922 0.250038 TTGTGCTCAGAGTCCACAGC 60.250 55.000 9.90 0.41 40.20 4.40
1653 2018 0.318762 AAGGTGGAGACGAAGCAGAC 59.681 55.000 0.00 0.00 0.00 3.51
2331 2696 0.241749 TACTCGGCGATGACGTTGTT 59.758 50.000 11.27 0.00 41.98 2.83
2414 2779 2.706123 GCGCACGAAAATGTTGGCG 61.706 57.895 0.30 0.00 46.47 5.69
2732 3097 0.732880 CAGTGCCGTACTTGGACGAG 60.733 60.000 6.99 0.00 45.82 4.18
2870 3235 1.585521 CTCCGCGCCGTAGTACTTG 60.586 63.158 0.00 0.00 0.00 3.16
3021 3386 1.901833 GGGCACATTTCAATCCAACCT 59.098 47.619 0.00 0.00 0.00 3.50
3038 3403 0.975887 TGGCATCCTTCTTTTTGGGC 59.024 50.000 0.00 0.00 0.00 5.36
3047 3412 2.471255 CCAAGACGTGGCATCCTTC 58.529 57.895 0.00 0.00 41.72 3.46
3127 3499 9.869844 CTTATTCCATTGAAGATAGTTTTAGCG 57.130 33.333 0.00 0.00 33.05 4.26
3216 3596 2.105306 TCCCACATCATAGACTGCCATG 59.895 50.000 0.00 0.00 0.00 3.66
3249 3629 8.642908 TTTATCTCCATTCATAGTTGTACGTG 57.357 34.615 0.00 0.00 0.00 4.49
3250 3630 9.661563 TTTTTATCTCCATTCATAGTTGTACGT 57.338 29.630 0.00 0.00 0.00 3.57
3293 3681 9.995003 GAGGATTGTTATCTCAAGATAGACAAT 57.005 33.333 23.00 23.00 42.64 2.71
3294 3682 8.981659 TGAGGATTGTTATCTCAAGATAGACAA 58.018 33.333 18.87 18.87 39.41 3.18
3338 3726 1.102978 AGGCAAATATTGGTGCGGTC 58.897 50.000 6.13 0.00 41.85 4.79
3358 3746 4.168760 GTTAACAAGCATTCATGTCCTGC 58.831 43.478 0.00 8.27 36.15 4.85
3359 3747 4.083324 ACGTTAACAAGCATTCATGTCCTG 60.083 41.667 6.39 0.00 0.00 3.86
3360 3748 4.072131 ACGTTAACAAGCATTCATGTCCT 58.928 39.130 6.39 0.00 0.00 3.85
3361 3749 4.419522 ACGTTAACAAGCATTCATGTCC 57.580 40.909 6.39 0.00 0.00 4.02
3362 3750 4.616802 CCAACGTTAACAAGCATTCATGTC 59.383 41.667 0.00 0.00 0.00 3.06
3363 3751 4.037446 ACCAACGTTAACAAGCATTCATGT 59.963 37.500 0.00 0.00 0.00 3.21
3364 3752 4.382457 CACCAACGTTAACAAGCATTCATG 59.618 41.667 0.00 0.00 0.00 3.07
3365 3753 4.037446 ACACCAACGTTAACAAGCATTCAT 59.963 37.500 0.00 0.00 0.00 2.57
3366 3754 3.378742 ACACCAACGTTAACAAGCATTCA 59.621 39.130 0.00 0.00 0.00 2.57
3367 3755 3.728718 CACACCAACGTTAACAAGCATTC 59.271 43.478 0.00 0.00 0.00 2.67
3368 3756 3.378742 TCACACCAACGTTAACAAGCATT 59.621 39.130 0.00 0.00 0.00 3.56
3369 3757 2.946329 TCACACCAACGTTAACAAGCAT 59.054 40.909 0.00 0.00 0.00 3.79
3370 3758 2.353269 CTCACACCAACGTTAACAAGCA 59.647 45.455 0.00 0.00 0.00 3.91
3371 3759 2.286772 CCTCACACCAACGTTAACAAGC 60.287 50.000 0.00 0.00 0.00 4.01
3372 3760 2.286772 GCCTCACACCAACGTTAACAAG 60.287 50.000 0.00 0.00 0.00 3.16
3373 3761 1.671845 GCCTCACACCAACGTTAACAA 59.328 47.619 0.00 0.00 0.00 2.83
3374 3762 1.134340 AGCCTCACACCAACGTTAACA 60.134 47.619 0.00 0.00 0.00 2.41
3375 3763 1.263217 CAGCCTCACACCAACGTTAAC 59.737 52.381 0.00 0.00 0.00 2.01
3376 3764 1.588674 CAGCCTCACACCAACGTTAA 58.411 50.000 0.00 0.00 0.00 2.01
3377 3765 0.250124 CCAGCCTCACACCAACGTTA 60.250 55.000 0.00 0.00 0.00 3.18
3378 3766 1.525995 CCAGCCTCACACCAACGTT 60.526 57.895 0.00 0.00 0.00 3.99
3379 3767 2.111043 CCAGCCTCACACCAACGT 59.889 61.111 0.00 0.00 0.00 3.99
3380 3768 2.669569 CCCAGCCTCACACCAACG 60.670 66.667 0.00 0.00 0.00 4.10
3381 3769 2.282462 CCCCAGCCTCACACCAAC 60.282 66.667 0.00 0.00 0.00 3.77
3382 3770 1.063070 TAACCCCAGCCTCACACCAA 61.063 55.000 0.00 0.00 0.00 3.67
3383 3771 0.844661 ATAACCCCAGCCTCACACCA 60.845 55.000 0.00 0.00 0.00 4.17
3384 3772 0.331616 AATAACCCCAGCCTCACACC 59.668 55.000 0.00 0.00 0.00 4.16
3385 3773 1.004277 TCAATAACCCCAGCCTCACAC 59.996 52.381 0.00 0.00 0.00 3.82
3386 3774 1.367346 TCAATAACCCCAGCCTCACA 58.633 50.000 0.00 0.00 0.00 3.58
3387 3775 2.576615 GATCAATAACCCCAGCCTCAC 58.423 52.381 0.00 0.00 0.00 3.51
3388 3776 1.140852 CGATCAATAACCCCAGCCTCA 59.859 52.381 0.00 0.00 0.00 3.86
3389 3777 1.543429 CCGATCAATAACCCCAGCCTC 60.543 57.143 0.00 0.00 0.00 4.70
3390 3778 0.474184 CCGATCAATAACCCCAGCCT 59.526 55.000 0.00 0.00 0.00 4.58
3391 3779 0.472471 TCCGATCAATAACCCCAGCC 59.528 55.000 0.00 0.00 0.00 4.85
3392 3780 2.224523 TGATCCGATCAATAACCCCAGC 60.225 50.000 8.70 0.00 36.11 4.85
3393 3781 3.769739 TGATCCGATCAATAACCCCAG 57.230 47.619 8.70 0.00 36.11 4.45
3394 3782 4.322424 CGTATGATCCGATCAATAACCCCA 60.322 45.833 14.99 0.00 43.50 4.96
3395 3783 4.181578 CGTATGATCCGATCAATAACCCC 58.818 47.826 14.99 0.00 43.50 4.95
3396 3784 4.181578 CCGTATGATCCGATCAATAACCC 58.818 47.826 14.99 0.09 43.50 4.11
3397 3785 4.625742 CACCGTATGATCCGATCAATAACC 59.374 45.833 14.99 1.63 43.50 2.85
3398 3786 5.345202 GTCACCGTATGATCCGATCAATAAC 59.655 44.000 14.99 11.98 43.50 1.89
3399 3787 5.010213 TGTCACCGTATGATCCGATCAATAA 59.990 40.000 14.99 1.76 43.50 1.40
3400 3788 4.521256 TGTCACCGTATGATCCGATCAATA 59.479 41.667 14.99 5.94 43.50 1.90
3401 3789 3.320826 TGTCACCGTATGATCCGATCAAT 59.679 43.478 14.99 6.81 43.50 2.57
3402 3790 2.691011 TGTCACCGTATGATCCGATCAA 59.309 45.455 14.99 2.69 43.50 2.57
3403 3791 2.034179 GTGTCACCGTATGATCCGATCA 59.966 50.000 13.46 13.46 44.55 2.92
3404 3792 2.293677 AGTGTCACCGTATGATCCGATC 59.706 50.000 0.00 1.01 40.28 3.69
3405 3793 2.307768 AGTGTCACCGTATGATCCGAT 58.692 47.619 0.00 0.00 40.28 4.18
3406 3794 1.758936 AGTGTCACCGTATGATCCGA 58.241 50.000 0.00 0.00 40.28 4.55
3407 3795 3.066342 ACTTAGTGTCACCGTATGATCCG 59.934 47.826 0.00 0.00 40.28 4.18
3408 3796 4.650754 ACTTAGTGTCACCGTATGATCC 57.349 45.455 0.00 0.00 40.28 3.36
3409 3797 6.260493 AGACTACTTAGTGTCACCGTATGATC 59.740 42.308 14.05 0.00 36.76 2.92
3410 3798 6.120905 AGACTACTTAGTGTCACCGTATGAT 58.879 40.000 14.05 0.00 36.76 2.45
3411 3799 5.494724 AGACTACTTAGTGTCACCGTATGA 58.505 41.667 14.05 0.00 36.50 2.15
3412 3800 5.585445 AGAGACTACTTAGTGTCACCGTATG 59.415 44.000 14.18 0.00 45.86 2.39
3413 3801 5.743117 AGAGACTACTTAGTGTCACCGTAT 58.257 41.667 14.18 0.00 45.86 3.06
3414 3802 5.157940 AGAGACTACTTAGTGTCACCGTA 57.842 43.478 14.18 0.00 45.86 4.02
3415 3803 4.002316 GAGAGACTACTTAGTGTCACCGT 58.998 47.826 14.18 0.00 45.86 4.83
3416 3804 3.374678 GGAGAGACTACTTAGTGTCACCG 59.625 52.174 14.18 0.00 45.86 4.94
3417 3805 4.968812 GGAGAGACTACTTAGTGTCACC 57.031 50.000 14.18 13.19 45.86 4.02
3418 3806 4.396790 CAGGGAGAGACTACTTAGTGTCAC 59.603 50.000 14.18 8.78 45.86 3.67
3419 3807 4.288887 TCAGGGAGAGACTACTTAGTGTCA 59.711 45.833 14.18 0.00 45.86 3.58
3420 3808 4.846040 TCAGGGAGAGACTACTTAGTGTC 58.154 47.826 5.59 5.59 44.35 3.67
3421 3809 4.931027 TCAGGGAGAGACTACTTAGTGT 57.069 45.455 0.00 0.00 36.50 3.55
3422 3810 8.356657 CAATTATCAGGGAGAGACTACTTAGTG 58.643 40.741 0.00 0.00 36.50 2.74
3423 3811 8.282982 TCAATTATCAGGGAGAGACTACTTAGT 58.717 37.037 0.00 0.00 39.71 2.24
3424 3812 8.698973 TCAATTATCAGGGAGAGACTACTTAG 57.301 38.462 0.00 0.00 0.00 2.18
3425 3813 8.915036 GTTCAATTATCAGGGAGAGACTACTTA 58.085 37.037 0.00 0.00 0.00 2.24
3426 3814 7.621683 AGTTCAATTATCAGGGAGAGACTACTT 59.378 37.037 0.00 0.00 0.00 2.24
3427 3815 7.129425 AGTTCAATTATCAGGGAGAGACTACT 58.871 38.462 0.00 0.00 0.00 2.57
3428 3816 7.354751 AGTTCAATTATCAGGGAGAGACTAC 57.645 40.000 0.00 0.00 0.00 2.73
3430 3818 9.308000 CTATAGTTCAATTATCAGGGAGAGACT 57.692 37.037 0.00 0.00 0.00 3.24
3431 3819 9.084533 ACTATAGTTCAATTATCAGGGAGAGAC 57.915 37.037 0.00 0.00 0.00 3.36
3432 3820 9.661954 AACTATAGTTCAATTATCAGGGAGAGA 57.338 33.333 12.50 0.00 31.64 3.10
3435 3823 9.277783 CCAAACTATAGTTCAATTATCAGGGAG 57.722 37.037 18.28 0.00 37.25 4.30
3436 3824 8.998814 TCCAAACTATAGTTCAATTATCAGGGA 58.001 33.333 18.28 9.48 37.25 4.20
3437 3825 9.057089 GTCCAAACTATAGTTCAATTATCAGGG 57.943 37.037 18.28 7.68 37.25 4.45
3438 3826 8.765219 CGTCCAAACTATAGTTCAATTATCAGG 58.235 37.037 18.28 9.25 37.25 3.86
3439 3827 8.276325 GCGTCCAAACTATAGTTCAATTATCAG 58.724 37.037 18.28 5.96 37.25 2.90
3440 3828 7.766738 TGCGTCCAAACTATAGTTCAATTATCA 59.233 33.333 18.28 8.82 37.25 2.15
3441 3829 8.138365 TGCGTCCAAACTATAGTTCAATTATC 57.862 34.615 18.28 6.63 37.25 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.