Multiple sequence alignment - TraesCS2D01G073000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G073000 chr2D 100.000 7007 0 0 1 7007 30583178 30590184 0.000000e+00 12940
1 TraesCS2D01G073000 chr2D 77.941 952 165 33 3304 4232 30549097 30550026 2.860000e-153 553
2 TraesCS2D01G073000 chr2D 78.458 882 138 34 3304 4155 22466097 22466956 4.810000e-146 529
3 TraesCS2D01G073000 chr2D 77.991 886 143 38 3304 4159 22431608 22430745 6.270000e-140 508
4 TraesCS2D01G073000 chr2D 78.475 590 97 22 4746 5310 22468138 22468722 6.680000e-95 359
5 TraesCS2D01G073000 chr2D 78.723 564 90 18 4775 5310 22429531 22428970 4.020000e-92 350
6 TraesCS2D01G073000 chr2D 78.436 422 75 13 4765 5175 30550426 30550842 1.940000e-65 261
7 TraesCS2D01G073000 chr2D 100.000 83 0 0 1110 1192 30655885 30655967 3.380000e-33 154
8 TraesCS2D01G073000 chr2D 92.929 99 7 0 1921 2019 30585358 30585456 2.040000e-30 145
9 TraesCS2D01G073000 chr2D 91.209 91 8 0 2008 2098 30584998 30585088 2.650000e-24 124
10 TraesCS2D01G073000 chr2D 91.209 91 8 0 1821 1911 30585185 30585275 2.650000e-24 124
11 TraesCS2D01G073000 chr2B 96.365 3274 86 12 2018 5262 50346234 50349503 0.000000e+00 5356
12 TraesCS2D01G073000 chr2B 95.385 1755 59 9 5257 7007 50351603 50353339 0.000000e+00 2772
13 TraesCS2D01G073000 chr2B 91.319 599 25 11 2120 2713 736599974 736599398 0.000000e+00 793
14 TraesCS2D01G073000 chr2B 91.319 599 25 11 2120 2713 736604248 736603672 0.000000e+00 793
15 TraesCS2D01G073000 chr2B 91.950 559 36 7 1028 1580 50345370 50345925 0.000000e+00 774
16 TraesCS2D01G073000 chr2B 77.230 953 171 33 3304 4232 50288720 50289650 3.750000e-142 516
17 TraesCS2D01G073000 chr2B 93.617 329 20 1 1584 1912 50345988 50346315 2.270000e-134 490
18 TraesCS2D01G073000 chr2B 78.099 831 136 35 3340 4146 39369128 39369936 1.060000e-132 484
19 TraesCS2D01G073000 chr2B 77.946 594 97 24 4746 5310 39371180 39371768 2.420000e-89 340
20 TraesCS2D01G073000 chr2B 78.723 423 73 14 4765 5175 50290509 50290926 4.170000e-67 267
21 TraesCS2D01G073000 chr2B 91.200 125 11 0 1761 1885 736600100 736599976 3.360000e-38 171
22 TraesCS2D01G073000 chr2B 91.200 125 11 0 1761 1885 736604374 736604250 3.360000e-38 171
23 TraesCS2D01G073000 chr2B 92.929 99 7 0 1921 2019 50346401 50346499 2.040000e-30 145
24 TraesCS2D01G073000 chr2B 90.000 110 7 2 1110 1215 50626104 50626213 9.480000e-29 139
25 TraesCS2D01G073000 chr2B 95.181 83 4 0 1110 1192 50489418 50489336 1.590000e-26 132
26 TraesCS2D01G073000 chr2A 92.736 1597 72 26 1 1584 32538863 32540428 0.000000e+00 2266
27 TraesCS2D01G073000 chr2A 95.902 1391 40 3 4562 5936 32544166 32545555 0.000000e+00 2237
28 TraesCS2D01G073000 chr2A 96.562 1280 29 8 3147 4419 32542843 32544114 0.000000e+00 2106
29 TraesCS2D01G073000 chr2A 95.561 1239 46 5 1921 3154 32540864 32542098 0.000000e+00 1975
30 TraesCS2D01G073000 chr2A 90.827 556 44 6 6451 7004 32546305 32546855 0.000000e+00 737
31 TraesCS2D01G073000 chr2A 78.279 953 160 36 3304 4232 32529897 32530826 2.840000e-158 569
32 TraesCS2D01G073000 chr2A 93.503 354 21 2 6267 6620 32545956 32546307 6.230000e-145 525
33 TraesCS2D01G073000 chr2A 77.517 894 135 44 3304 4159 24163726 24162861 1.770000e-130 477
34 TraesCS2D01G073000 chr2A 96.014 276 10 1 1584 1859 32540484 32540758 1.390000e-121 448
35 TraesCS2D01G073000 chr2A 78.937 527 81 25 4746 5253 24161319 24160804 1.460000e-86 331
36 TraesCS2D01G073000 chr2A 92.952 227 13 3 6009 6235 32545740 32545963 1.880000e-85 327
37 TraesCS2D01G073000 chr2A 78.186 408 74 12 4765 5163 32531706 32532107 5.430000e-61 246
38 TraesCS2D01G073000 chr2A 89.503 181 13 2 2104 2279 32540783 32540962 2.540000e-54 224
39 TraesCS2D01G073000 chr2A 93.162 117 8 0 5931 6047 32545618 32545734 9.340000e-39 172
40 TraesCS2D01G073000 chr2A 98.462 65 1 0 4445 4509 32544109 32544173 1.600000e-21 115
41 TraesCS2D01G073000 chr6B 93.320 1003 43 8 2018 3007 18915674 18916665 0.000000e+00 1459
42 TraesCS2D01G073000 chr6B 92.982 171 12 0 1742 1912 18915585 18915755 4.200000e-62 250
43 TraesCS2D01G073000 chrUn 93.714 859 35 10 2018 2871 40797743 40798587 0.000000e+00 1269
44 TraesCS2D01G073000 chrUn 90.058 171 17 0 1742 1912 40797654 40797824 9.150000e-54 222
45 TraesCS2D01G073000 chrUn 95.062 81 3 1 1631 1711 40797577 40797656 7.380000e-25 126
46 TraesCS2D01G073000 chr4B 91.348 601 23 14 2120 2713 658571895 658572473 0.000000e+00 795
47 TraesCS2D01G073000 chr4B 89.600 125 13 0 1761 1885 658571769 658571893 7.270000e-35 159
48 TraesCS2D01G073000 chr3B 90.682 601 28 12 2118 2713 11381646 11382223 0.000000e+00 774
49 TraesCS2D01G073000 chr3B 92.188 128 10 0 1761 1888 11381522 11381649 1.550000e-41 182
50 TraesCS2D01G073000 chr7B 95.072 487 19 5 2227 2713 625272389 625272870 0.000000e+00 761
51 TraesCS2D01G073000 chr7B 93.310 284 16 3 2588 2871 398322741 398322461 3.910000e-112 416
52 TraesCS2D01G073000 chr5B 92.411 224 16 1 2784 3007 700120522 700120744 1.130000e-82 318
53 TraesCS2D01G073000 chr1B 87.156 109 4 6 1518 1619 685657383 685657278 1.600000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G073000 chr2D 30583178 30590184 7006 False 12940.00 12940 100.000000 1 7007 1 chr2D.!!$F1 7006
1 TraesCS2D01G073000 chr2D 22466097 22468722 2625 False 444.00 529 78.466500 3304 5310 2 chr2D.!!$F3 2006
2 TraesCS2D01G073000 chr2D 22428970 22431608 2638 True 429.00 508 78.357000 3304 5310 2 chr2D.!!$R1 2006
3 TraesCS2D01G073000 chr2D 30549097 30550842 1745 False 407.00 553 78.188500 3304 5175 2 chr2D.!!$F4 1871
4 TraesCS2D01G073000 chr2B 50351603 50353339 1736 False 2772.00 2772 95.385000 5257 7007 1 chr2B.!!$F1 1750
5 TraesCS2D01G073000 chr2B 50345370 50349503 4133 False 1691.25 5356 93.715250 1028 5262 4 chr2B.!!$F5 4234
6 TraesCS2D01G073000 chr2B 736599398 736604374 4976 True 482.00 793 91.259500 1761 2713 4 chr2B.!!$R2 952
7 TraesCS2D01G073000 chr2B 39369128 39371768 2640 False 412.00 484 78.022500 3340 5310 2 chr2B.!!$F3 1970
8 TraesCS2D01G073000 chr2B 50288720 50290926 2206 False 391.50 516 77.976500 3304 5175 2 chr2B.!!$F4 1871
9 TraesCS2D01G073000 chr2A 32538863 32546855 7992 False 1012.00 2266 94.107636 1 7004 11 chr2A.!!$F2 7003
10 TraesCS2D01G073000 chr2A 32529897 32532107 2210 False 407.50 569 78.232500 3304 5163 2 chr2A.!!$F1 1859
11 TraesCS2D01G073000 chr2A 24160804 24163726 2922 True 404.00 477 78.227000 3304 5253 2 chr2A.!!$R1 1949
12 TraesCS2D01G073000 chr6B 18915585 18916665 1080 False 854.50 1459 93.151000 1742 3007 2 chr6B.!!$F1 1265
13 TraesCS2D01G073000 chrUn 40797577 40798587 1010 False 539.00 1269 92.944667 1631 2871 3 chrUn.!!$F1 1240
14 TraesCS2D01G073000 chr4B 658571769 658572473 704 False 477.00 795 90.474000 1761 2713 2 chr4B.!!$F1 952
15 TraesCS2D01G073000 chr3B 11381522 11382223 701 False 478.00 774 91.435000 1761 2713 2 chr3B.!!$F1 952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.720027 TCGTCATCTCTCGTCGTCAC 59.280 55.000 0.00 0.00 0.00 3.67 F
323 324 1.019805 GTTAGACTGGCTTGTCGGGC 61.020 60.000 0.00 0.00 41.47 6.13 F
1877 2195 0.106708 GCTGAGGATATCGGTGGCAA 59.893 55.000 0.00 0.00 36.58 4.52 F
1986 2304 0.108207 GGAGGTGGCAGATGATGAGG 59.892 60.000 0.00 0.00 0.00 3.86 F
2098 2416 0.324091 TTCCCTCTGTAGTCCGGACC 60.324 60.000 30.82 17.09 0.00 4.46 F
2161 2479 0.409092 TCACCCCATTTGTGCTGGAT 59.591 50.000 0.00 0.00 35.70 3.41 F
2162 2480 1.203162 TCACCCCATTTGTGCTGGATT 60.203 47.619 0.00 0.00 35.70 3.01 F
2622 7215 2.029844 GACTCAGTGCCGCTCAACC 61.030 63.158 0.00 0.00 0.00 3.77 F
4132 9522 4.342092 ACTTGCCAAATTAACTTGCTGTCT 59.658 37.500 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 2176 0.106708 TTGCCACCGATATCCTCAGC 59.893 55.000 0.00 0.0 0.00 4.26 R
1967 2285 0.108207 CCTCATCATCTGCCACCTCC 59.892 60.000 0.00 0.0 0.00 4.30 R
3834 9201 4.100344 GGTTTTCCTGTTTAAAAGCCTCCA 59.900 41.667 0.00 0.0 38.01 3.86 R
4132 9522 5.497464 TGGACAATTCAGGACACATAAGA 57.503 39.130 0.00 0.0 0.00 2.10 R
4270 10423 1.801178 GCAAGGCTCACTGTAGTTCAC 59.199 52.381 0.00 0.0 0.00 3.18 R
4487 10908 7.118390 AGTCTGTTTTGTCTACATACTCAATGC 59.882 37.037 0.00 0.0 39.39 3.56 R
4867 11469 8.722480 TCAAGGAATATCACTACAGAACATTG 57.278 34.615 0.00 0.0 0.00 2.82 R
5012 11634 0.323816 TCCTGAGTGGCACGATCTCT 60.324 55.000 12.71 0.0 35.26 3.10 R
6446 13204 1.135859 CGAGCAAAATGGTGACTCTGC 60.136 52.381 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.333347 GGACATCGTCATCTCTCGTCG 60.333 57.143 0.00 0.00 33.68 5.12
41 42 0.720027 TCGTCATCTCTCGTCGTCAC 59.280 55.000 0.00 0.00 0.00 3.67
95 96 5.821995 CACCACATCACATACATATTGGACA 59.178 40.000 0.00 0.00 0.00 4.02
97 98 5.821995 CCACATCACATACATATTGGACACA 59.178 40.000 0.00 0.00 0.00 3.72
147 148 2.511600 CAGCGACCCGTTCATCCC 60.512 66.667 0.00 0.00 0.00 3.85
218 219 8.676454 TTACGATTGTTTTGTGGTAATATTGC 57.324 30.769 0.00 0.00 0.00 3.56
228 229 3.883489 GTGGTAATATTGCTCAGGAACCC 59.117 47.826 3.46 0.00 0.00 4.11
230 231 1.680338 AATATTGCTCAGGAACCCGC 58.320 50.000 0.00 0.00 0.00 6.13
241 242 3.190391 AACCCGCCCTTTCCCCTT 61.190 61.111 0.00 0.00 0.00 3.95
312 313 3.620374 GCATGAGGTGATGTGTTAGACTG 59.380 47.826 0.00 0.00 0.00 3.51
323 324 1.019805 GTTAGACTGGCTTGTCGGGC 61.020 60.000 0.00 0.00 41.47 6.13
324 325 1.476845 TTAGACTGGCTTGTCGGGCA 61.477 55.000 0.00 0.00 41.47 5.36
327 328 3.357079 CTGGCTTGTCGGGCACAC 61.357 66.667 0.00 0.00 37.60 3.82
362 363 1.760613 CCCCAAGCACGGTCTATCTAA 59.239 52.381 0.00 0.00 0.00 2.10
368 369 5.168569 CAAGCACGGTCTATCTAAACTTCA 58.831 41.667 0.00 0.00 0.00 3.02
373 374 6.264088 CACGGTCTATCTAAACTTCACTACC 58.736 44.000 0.00 0.00 0.00 3.18
385 386 4.620723 ACTTCACTACCCCATCTCATGTA 58.379 43.478 0.00 0.00 0.00 2.29
438 439 5.987098 ACTGCTTCATGTTCTCATATGTCT 58.013 37.500 1.90 0.00 32.47 3.41
484 486 8.015658 GGTAAATTATGTTATCAAGCATCGACC 58.984 37.037 0.00 0.00 0.00 4.79
493 495 2.124695 GCATCGACCTGGAACCCC 60.125 66.667 0.00 0.00 0.00 4.95
526 529 3.362581 TGCTATCGCACAGTAAGGC 57.637 52.632 0.00 0.00 42.25 4.35
535 538 2.076863 GCACAGTAAGGCAGTAACCAG 58.923 52.381 0.00 0.00 0.00 4.00
570 573 3.138304 ACTATGCGCAGTTCTTTGTGAA 58.862 40.909 18.32 0.00 0.00 3.18
596 599 4.157289 GCAATGAGTAATAGGGCATCATGG 59.843 45.833 0.00 0.00 31.24 3.66
688 692 2.922384 GACGATGACGACGATGATGAT 58.078 47.619 0.00 0.00 42.66 2.45
790 796 1.755179 AAGAATCCGCATCCAACCTG 58.245 50.000 0.00 0.00 0.00 4.00
805 813 3.181450 CCAACCTGGAGATTCATAGGACC 60.181 52.174 0.00 0.00 40.96 4.46
881 890 6.265196 GCTGGGACAAATACATGGATTAATCA 59.735 38.462 17.07 4.18 38.70 2.57
910 919 4.458989 GGAACATTTGTAGCCTGATTGTGA 59.541 41.667 0.00 0.00 0.00 3.58
921 930 2.598589 CTGATTGTGACATTTTGCCCG 58.401 47.619 0.00 0.00 0.00 6.13
936 945 1.295792 GCCCGACAAAATATCGCTGA 58.704 50.000 0.00 0.00 38.27 4.26
943 952 5.030295 CGACAAAATATCGCTGAGCAAAAT 58.970 37.500 4.88 0.00 31.96 1.82
947 956 6.646240 ACAAAATATCGCTGAGCAAAATGTTT 59.354 30.769 4.88 3.09 0.00 2.83
948 957 7.171337 ACAAAATATCGCTGAGCAAAATGTTTT 59.829 29.630 4.88 8.79 0.00 2.43
951 960 3.122297 TCGCTGAGCAAAATGTTTTTGG 58.878 40.909 4.88 0.38 0.00 3.28
955 964 5.265477 GCTGAGCAAAATGTTTTTGGTTTC 58.735 37.500 15.90 7.44 39.83 2.78
960 969 6.562518 AGCAAAATGTTTTTGGTTTCCATTG 58.437 32.000 10.64 0.00 36.84 2.82
969 978 7.930865 TGTTTTTGGTTTCCATTGGATAGAAAG 59.069 33.333 6.15 0.00 31.53 2.62
970 979 7.847711 TTTTGGTTTCCATTGGATAGAAAGA 57.152 32.000 6.15 0.00 31.53 2.52
971 980 7.847711 TTTGGTTTCCATTGGATAGAAAGAA 57.152 32.000 6.15 0.00 31.53 2.52
992 1001 8.603242 AAGAAATATATTTCCATCGCGTAAGT 57.397 30.769 27.18 8.05 45.52 2.24
1003 1012 4.318760 CCATCGCGTAAGTTTATCACATGG 60.319 45.833 5.77 2.86 41.68 3.66
1004 1013 3.191669 TCGCGTAAGTTTATCACATGGG 58.808 45.455 5.77 0.00 41.68 4.00
1006 1015 3.245284 CGCGTAAGTTTATCACATGGGAG 59.755 47.826 2.98 0.00 41.68 4.30
1007 1016 4.439057 GCGTAAGTTTATCACATGGGAGA 58.561 43.478 2.98 0.00 41.68 3.71
1008 1017 5.057149 GCGTAAGTTTATCACATGGGAGAT 58.943 41.667 2.98 3.35 41.68 2.75
1009 1018 5.527582 GCGTAAGTTTATCACATGGGAGATT 59.472 40.000 2.98 0.00 41.68 2.40
1010 1019 6.038271 GCGTAAGTTTATCACATGGGAGATTT 59.962 38.462 2.98 0.00 41.68 2.17
1011 1020 7.415206 GCGTAAGTTTATCACATGGGAGATTTT 60.415 37.037 2.98 0.00 41.68 1.82
1012 1021 7.910162 CGTAAGTTTATCACATGGGAGATTTTG 59.090 37.037 2.98 0.00 0.00 2.44
1013 1022 7.781324 AAGTTTATCACATGGGAGATTTTGT 57.219 32.000 2.98 0.00 0.00 2.83
1014 1023 8.877864 AAGTTTATCACATGGGAGATTTTGTA 57.122 30.769 2.98 0.00 0.00 2.41
1015 1024 8.281212 AGTTTATCACATGGGAGATTTTGTAC 57.719 34.615 2.98 0.00 0.00 2.90
1020 1029 3.758554 ACATGGGAGATTTTGTACTGCAC 59.241 43.478 0.00 0.00 0.00 4.57
1036 1045 6.970043 TGTACTGCACAAGTTTGAACAAATAC 59.030 34.615 3.34 0.68 40.56 1.89
1095 1105 1.840635 GACTTTCCCAGCATACCCTCT 59.159 52.381 0.00 0.00 0.00 3.69
1118 1128 9.935241 CTCTGGACAATACAGCAGTATAAATAT 57.065 33.333 1.78 0.00 40.00 1.28
1119 1129 9.710900 TCTGGACAATACAGCAGTATAAATATG 57.289 33.333 1.78 0.00 40.00 1.78
1120 1130 8.322906 TGGACAATACAGCAGTATAAATATGC 57.677 34.615 1.78 0.00 40.00 3.14
1121 1131 7.390440 TGGACAATACAGCAGTATAAATATGCC 59.610 37.037 1.78 4.08 40.00 4.40
1288 1315 2.658593 CGGGAAGCAGCCGATACG 60.659 66.667 0.00 0.00 0.00 3.06
1714 1801 4.108501 TCTTGGATGGATTGCTGCATAT 57.891 40.909 1.84 0.00 32.99 1.78
1793 1880 1.029947 CCGAGGGAAAAATGGTCGGG 61.030 60.000 1.07 0.00 45.21 5.14
1844 2162 5.116180 TGCCAGTTCTTCTTGGTATAATCG 58.884 41.667 0.00 0.00 0.00 3.34
1845 2163 4.511826 GCCAGTTCTTCTTGGTATAATCGG 59.488 45.833 0.00 0.00 0.00 4.18
1846 2164 5.671493 CCAGTTCTTCTTGGTATAATCGGT 58.329 41.667 0.00 0.00 0.00 4.69
1847 2165 6.113411 CCAGTTCTTCTTGGTATAATCGGTT 58.887 40.000 0.00 0.00 0.00 4.44
1848 2166 6.037172 CCAGTTCTTCTTGGTATAATCGGTTG 59.963 42.308 0.00 0.00 0.00 3.77
1849 2167 6.816640 CAGTTCTTCTTGGTATAATCGGTTGA 59.183 38.462 0.00 0.00 0.00 3.18
1850 2168 6.817140 AGTTCTTCTTGGTATAATCGGTTGAC 59.183 38.462 0.00 0.00 0.00 3.18
1851 2169 6.540438 TCTTCTTGGTATAATCGGTTGACT 57.460 37.500 0.00 0.00 0.00 3.41
1852 2170 6.942976 TCTTCTTGGTATAATCGGTTGACTT 58.057 36.000 0.00 0.00 0.00 3.01
1853 2171 6.816640 TCTTCTTGGTATAATCGGTTGACTTG 59.183 38.462 0.00 0.00 0.00 3.16
1854 2172 5.424757 TCTTGGTATAATCGGTTGACTTGG 58.575 41.667 0.00 0.00 0.00 3.61
1855 2173 4.829872 TGGTATAATCGGTTGACTTGGT 57.170 40.909 0.00 0.00 0.00 3.67
1856 2174 5.936187 TGGTATAATCGGTTGACTTGGTA 57.064 39.130 0.00 0.00 0.00 3.25
1857 2175 6.297080 TGGTATAATCGGTTGACTTGGTAA 57.703 37.500 0.00 0.00 0.00 2.85
1858 2176 6.342906 TGGTATAATCGGTTGACTTGGTAAG 58.657 40.000 0.00 0.00 0.00 2.34
1859 2177 5.235831 GGTATAATCGGTTGACTTGGTAAGC 59.764 44.000 0.00 0.00 0.00 3.09
1860 2178 3.418684 AATCGGTTGACTTGGTAAGCT 57.581 42.857 0.00 0.00 0.00 3.74
1861 2179 2.163818 TCGGTTGACTTGGTAAGCTG 57.836 50.000 0.00 0.00 0.00 4.24
1862 2180 1.689813 TCGGTTGACTTGGTAAGCTGA 59.310 47.619 0.00 0.00 0.00 4.26
1863 2181 2.069273 CGGTTGACTTGGTAAGCTGAG 58.931 52.381 0.00 0.00 0.00 3.35
1864 2182 2.427506 GGTTGACTTGGTAAGCTGAGG 58.572 52.381 0.00 0.00 0.00 3.86
1865 2183 2.038557 GGTTGACTTGGTAAGCTGAGGA 59.961 50.000 0.00 0.00 0.00 3.71
1866 2184 3.307762 GGTTGACTTGGTAAGCTGAGGAT 60.308 47.826 0.00 0.00 0.00 3.24
1867 2185 4.081087 GGTTGACTTGGTAAGCTGAGGATA 60.081 45.833 0.00 0.00 0.00 2.59
1868 2186 5.396884 GGTTGACTTGGTAAGCTGAGGATAT 60.397 44.000 0.00 0.00 0.00 1.63
1869 2187 5.537300 TGACTTGGTAAGCTGAGGATATC 57.463 43.478 0.00 0.00 0.00 1.63
1870 2188 4.038042 TGACTTGGTAAGCTGAGGATATCG 59.962 45.833 0.00 0.00 0.00 2.92
1871 2189 3.322254 ACTTGGTAAGCTGAGGATATCGG 59.678 47.826 0.00 0.00 37.36 4.18
1872 2190 2.958818 TGGTAAGCTGAGGATATCGGT 58.041 47.619 0.00 0.00 36.58 4.69
1873 2191 2.628178 TGGTAAGCTGAGGATATCGGTG 59.372 50.000 0.00 0.00 36.58 4.94
1874 2192 2.028930 GGTAAGCTGAGGATATCGGTGG 60.029 54.545 0.00 0.00 36.58 4.61
1875 2193 0.394565 AAGCTGAGGATATCGGTGGC 59.605 55.000 0.00 0.00 36.58 5.01
1876 2194 0.760567 AGCTGAGGATATCGGTGGCA 60.761 55.000 0.00 0.00 36.58 4.92
1877 2195 0.106708 GCTGAGGATATCGGTGGCAA 59.893 55.000 0.00 0.00 36.58 4.52
1878 2196 1.875576 GCTGAGGATATCGGTGGCAAG 60.876 57.143 0.00 0.00 36.58 4.01
1879 2197 1.688735 CTGAGGATATCGGTGGCAAGA 59.311 52.381 0.00 0.00 0.00 3.02
1880 2198 1.688735 TGAGGATATCGGTGGCAAGAG 59.311 52.381 0.00 0.00 0.00 2.85
1881 2199 1.964223 GAGGATATCGGTGGCAAGAGA 59.036 52.381 0.00 0.00 0.00 3.10
1882 2200 2.365617 GAGGATATCGGTGGCAAGAGAA 59.634 50.000 0.00 0.00 0.00 2.87
1883 2201 2.103263 AGGATATCGGTGGCAAGAGAAC 59.897 50.000 0.00 0.00 0.00 3.01
1884 2202 2.484889 GATATCGGTGGCAAGAGAACC 58.515 52.381 0.00 0.00 0.00 3.62
1885 2203 1.568504 TATCGGTGGCAAGAGAACCT 58.431 50.000 0.00 0.00 0.00 3.50
1886 2204 1.568504 ATCGGTGGCAAGAGAACCTA 58.431 50.000 0.00 0.00 0.00 3.08
1887 2205 1.344065 TCGGTGGCAAGAGAACCTAA 58.656 50.000 0.00 0.00 0.00 2.69
1888 2206 1.275291 TCGGTGGCAAGAGAACCTAAG 59.725 52.381 0.00 0.00 0.00 2.18
1889 2207 1.676014 CGGTGGCAAGAGAACCTAAGG 60.676 57.143 0.00 0.00 0.00 2.69
1890 2208 1.628846 GGTGGCAAGAGAACCTAAGGA 59.371 52.381 0.00 0.00 0.00 3.36
1891 2209 2.239907 GGTGGCAAGAGAACCTAAGGAT 59.760 50.000 0.00 0.00 0.00 3.24
1892 2210 3.308473 GGTGGCAAGAGAACCTAAGGATT 60.308 47.826 0.00 0.00 0.00 3.01
1893 2211 4.336280 GTGGCAAGAGAACCTAAGGATTT 58.664 43.478 0.00 0.00 0.00 2.17
1894 2212 4.396478 GTGGCAAGAGAACCTAAGGATTTC 59.604 45.833 0.00 0.00 0.00 2.17
1895 2213 3.948473 GGCAAGAGAACCTAAGGATTTCC 59.052 47.826 0.00 0.00 0.00 3.13
1896 2214 3.948473 GCAAGAGAACCTAAGGATTTCCC 59.052 47.826 0.00 0.00 36.42 3.97
1907 2225 2.389715 AGGATTTCCCTCTGTAGTCCG 58.610 52.381 0.00 0.00 43.31 4.79
1908 2226 1.413077 GGATTTCCCTCTGTAGTCCGG 59.587 57.143 0.00 0.00 0.00 5.14
1909 2227 2.385803 GATTTCCCTCTGTAGTCCGGA 58.614 52.381 0.00 0.00 0.00 5.14
1910 2228 1.553706 TTTCCCTCTGTAGTCCGGAC 58.446 55.000 27.67 27.67 0.00 4.79
1911 2229 0.679002 TTCCCTCTGTAGTCCGGACG 60.679 60.000 28.26 14.61 36.20 4.79
1912 2230 1.077930 CCCTCTGTAGTCCGGACGA 60.078 63.158 28.26 21.55 36.20 4.20
1913 2231 0.465824 CCCTCTGTAGTCCGGACGAT 60.466 60.000 28.26 15.15 36.20 3.73
1914 2232 0.663688 CCTCTGTAGTCCGGACGATG 59.336 60.000 28.26 19.04 36.20 3.84
1915 2233 1.664873 CTCTGTAGTCCGGACGATGA 58.335 55.000 28.26 21.75 36.20 2.92
1916 2234 1.600013 CTCTGTAGTCCGGACGATGAG 59.400 57.143 28.26 25.85 36.20 2.90
1917 2235 0.663688 CTGTAGTCCGGACGATGAGG 59.336 60.000 28.26 13.74 36.20 3.86
1918 2236 0.253894 TGTAGTCCGGACGATGAGGA 59.746 55.000 28.26 7.13 36.20 3.71
1919 2237 1.133884 TGTAGTCCGGACGATGAGGAT 60.134 52.381 28.26 11.32 36.34 3.24
1920 2238 1.955080 GTAGTCCGGACGATGAGGATT 59.045 52.381 28.26 10.57 36.34 3.01
1921 2239 0.747255 AGTCCGGACGATGAGGATTG 59.253 55.000 28.26 0.00 36.34 2.67
1922 2240 0.876342 GTCCGGACGATGAGGATTGC 60.876 60.000 20.85 0.00 36.34 3.56
1923 2241 1.043116 TCCGGACGATGAGGATTGCT 61.043 55.000 0.00 0.00 0.00 3.91
1924 2242 0.598680 CCGGACGATGAGGATTGCTC 60.599 60.000 0.00 0.00 0.00 4.26
1925 2243 0.387202 CGGACGATGAGGATTGCTCT 59.613 55.000 6.74 0.00 0.00 4.09
1926 2244 1.863267 GGACGATGAGGATTGCTCTG 58.137 55.000 6.74 0.00 0.00 3.35
1927 2245 1.216122 GACGATGAGGATTGCTCTGC 58.784 55.000 6.74 0.00 0.00 4.26
1928 2246 0.179062 ACGATGAGGATTGCTCTGCC 60.179 55.000 6.74 0.00 0.00 4.85
1929 2247 0.179065 CGATGAGGATTGCTCTGCCA 60.179 55.000 6.74 0.00 0.00 4.92
1930 2248 1.542767 CGATGAGGATTGCTCTGCCAT 60.543 52.381 6.74 0.00 0.00 4.40
1931 2249 2.584236 GATGAGGATTGCTCTGCCATT 58.416 47.619 6.74 0.00 0.00 3.16
1932 2250 2.519771 TGAGGATTGCTCTGCCATTT 57.480 45.000 6.74 0.00 0.00 2.32
1933 2251 2.811410 TGAGGATTGCTCTGCCATTTT 58.189 42.857 6.74 0.00 0.00 1.82
1934 2252 2.494471 TGAGGATTGCTCTGCCATTTTG 59.506 45.455 6.74 0.00 0.00 2.44
1935 2253 2.494870 GAGGATTGCTCTGCCATTTTGT 59.505 45.455 0.00 0.00 0.00 2.83
1936 2254 3.696051 GAGGATTGCTCTGCCATTTTGTA 59.304 43.478 0.00 0.00 0.00 2.41
1937 2255 3.698040 AGGATTGCTCTGCCATTTTGTAG 59.302 43.478 0.00 0.00 0.00 2.74
1938 2256 3.181483 GGATTGCTCTGCCATTTTGTAGG 60.181 47.826 0.00 0.00 0.00 3.18
1939 2257 2.877097 TGCTCTGCCATTTTGTAGGA 57.123 45.000 0.00 0.00 0.00 2.94
1940 2258 3.370840 TGCTCTGCCATTTTGTAGGAT 57.629 42.857 0.00 0.00 0.00 3.24
1941 2259 3.018856 TGCTCTGCCATTTTGTAGGATG 58.981 45.455 0.00 0.00 0.00 3.51
1942 2260 3.282021 GCTCTGCCATTTTGTAGGATGA 58.718 45.455 0.00 0.00 0.00 2.92
1943 2261 3.696051 GCTCTGCCATTTTGTAGGATGAA 59.304 43.478 0.00 0.00 0.00 2.57
1944 2262 4.201990 GCTCTGCCATTTTGTAGGATGAAG 60.202 45.833 0.00 0.00 0.00 3.02
1945 2263 4.272489 TCTGCCATTTTGTAGGATGAAGG 58.728 43.478 0.00 0.00 0.00 3.46
1946 2264 4.018506 TCTGCCATTTTGTAGGATGAAGGA 60.019 41.667 0.00 0.00 0.00 3.36
1947 2265 4.016444 TGCCATTTTGTAGGATGAAGGAC 58.984 43.478 0.00 0.00 0.00 3.85
1948 2266 3.381590 GCCATTTTGTAGGATGAAGGACC 59.618 47.826 0.00 0.00 0.00 4.46
1949 2267 3.627577 CCATTTTGTAGGATGAAGGACCG 59.372 47.826 0.00 0.00 0.00 4.79
1950 2268 3.343941 TTTTGTAGGATGAAGGACCGG 57.656 47.619 0.00 0.00 0.00 5.28
1951 2269 2.241281 TTGTAGGATGAAGGACCGGA 57.759 50.000 9.46 0.00 0.00 5.14
1952 2270 2.471815 TGTAGGATGAAGGACCGGAT 57.528 50.000 9.46 0.00 0.00 4.18
1953 2271 2.039418 TGTAGGATGAAGGACCGGATG 58.961 52.381 9.46 0.00 0.00 3.51
1954 2272 2.317040 GTAGGATGAAGGACCGGATGA 58.683 52.381 9.46 0.00 0.00 2.92
1955 2273 2.109229 AGGATGAAGGACCGGATGAT 57.891 50.000 9.46 0.00 0.00 2.45
1956 2274 1.696336 AGGATGAAGGACCGGATGATG 59.304 52.381 9.46 0.00 0.00 3.07
1957 2275 1.694150 GGATGAAGGACCGGATGATGA 59.306 52.381 9.46 0.00 0.00 2.92
1958 2276 2.289320 GGATGAAGGACCGGATGATGAG 60.289 54.545 9.46 0.00 0.00 2.90
1959 2277 1.123077 TGAAGGACCGGATGATGAGG 58.877 55.000 9.46 0.00 0.00 3.86
1960 2278 1.342975 TGAAGGACCGGATGATGAGGA 60.343 52.381 9.46 0.00 0.00 3.71
1961 2279 1.974236 GAAGGACCGGATGATGAGGAT 59.026 52.381 9.46 0.00 0.00 3.24
1962 2280 2.109229 AGGACCGGATGATGAGGATT 57.891 50.000 9.46 0.00 0.00 3.01
1963 2281 1.696336 AGGACCGGATGATGAGGATTG 59.304 52.381 9.46 0.00 0.00 2.67
1964 2282 1.271054 GGACCGGATGATGAGGATTGG 60.271 57.143 9.46 0.00 0.00 3.16
1965 2283 0.109342 ACCGGATGATGAGGATTGGC 59.891 55.000 9.46 0.00 0.00 4.52
1966 2284 0.109153 CCGGATGATGAGGATTGGCA 59.891 55.000 0.00 0.00 0.00 4.92
1967 2285 1.520494 CGGATGATGAGGATTGGCAG 58.480 55.000 0.00 0.00 0.00 4.85
1968 2286 1.881072 CGGATGATGAGGATTGGCAGG 60.881 57.143 0.00 0.00 0.00 4.85
1969 2287 1.422781 GGATGATGAGGATTGGCAGGA 59.577 52.381 0.00 0.00 0.00 3.86
1970 2288 2.552591 GGATGATGAGGATTGGCAGGAG 60.553 54.545 0.00 0.00 0.00 3.69
1971 2289 0.841961 TGATGAGGATTGGCAGGAGG 59.158 55.000 0.00 0.00 0.00 4.30
1972 2290 0.842635 GATGAGGATTGGCAGGAGGT 59.157 55.000 0.00 0.00 0.00 3.85
1973 2291 0.549950 ATGAGGATTGGCAGGAGGTG 59.450 55.000 0.00 0.00 0.00 4.00
1974 2292 1.225704 GAGGATTGGCAGGAGGTGG 59.774 63.158 0.00 0.00 0.00 4.61
1981 2299 2.993008 GCAGGAGGTGGCAGATGA 59.007 61.111 0.00 0.00 0.00 2.92
1982 2300 1.530771 GCAGGAGGTGGCAGATGAT 59.469 57.895 0.00 0.00 0.00 2.45
1983 2301 0.818445 GCAGGAGGTGGCAGATGATG 60.818 60.000 0.00 0.00 0.00 3.07
1984 2302 0.835276 CAGGAGGTGGCAGATGATGA 59.165 55.000 0.00 0.00 0.00 2.92
1985 2303 1.129917 AGGAGGTGGCAGATGATGAG 58.870 55.000 0.00 0.00 0.00 2.90
1986 2304 0.108207 GGAGGTGGCAGATGATGAGG 59.892 60.000 0.00 0.00 0.00 3.86
1987 2305 0.835941 GAGGTGGCAGATGATGAGGT 59.164 55.000 0.00 0.00 0.00 3.85
1988 2306 0.545171 AGGTGGCAGATGATGAGGTG 59.455 55.000 0.00 0.00 0.00 4.00
1989 2307 0.543277 GGTGGCAGATGATGAGGTGA 59.457 55.000 0.00 0.00 0.00 4.02
1990 2308 1.065199 GGTGGCAGATGATGAGGTGAA 60.065 52.381 0.00 0.00 0.00 3.18
1991 2309 2.618816 GGTGGCAGATGATGAGGTGAAA 60.619 50.000 0.00 0.00 0.00 2.69
1992 2310 3.084039 GTGGCAGATGATGAGGTGAAAA 58.916 45.455 0.00 0.00 0.00 2.29
1993 2311 3.698040 GTGGCAGATGATGAGGTGAAAAT 59.302 43.478 0.00 0.00 0.00 1.82
1994 2312 4.159135 GTGGCAGATGATGAGGTGAAAATT 59.841 41.667 0.00 0.00 0.00 1.82
1995 2313 4.773674 TGGCAGATGATGAGGTGAAAATTT 59.226 37.500 0.00 0.00 0.00 1.82
1996 2314 5.107133 GGCAGATGATGAGGTGAAAATTTG 58.893 41.667 0.00 0.00 0.00 2.32
1997 2315 5.337009 GGCAGATGATGAGGTGAAAATTTGT 60.337 40.000 0.00 0.00 0.00 2.83
1998 2316 5.575606 GCAGATGATGAGGTGAAAATTTGTG 59.424 40.000 0.00 0.00 0.00 3.33
1999 2317 6.684686 CAGATGATGAGGTGAAAATTTGTGT 58.315 36.000 0.00 0.00 0.00 3.72
2000 2318 7.149973 CAGATGATGAGGTGAAAATTTGTGTT 58.850 34.615 0.00 0.00 0.00 3.32
2001 2319 7.327761 CAGATGATGAGGTGAAAATTTGTGTTC 59.672 37.037 0.00 0.00 0.00 3.18
2002 2320 6.462552 TGATGAGGTGAAAATTTGTGTTCA 57.537 33.333 0.00 0.00 0.00 3.18
2009 2327 5.788467 GTGAAAATTTGTGTTCACTTGCTG 58.212 37.500 11.72 0.00 46.57 4.41
2010 2328 4.329528 TGAAAATTTGTGTTCACTTGCTGC 59.670 37.500 4.59 0.00 0.00 5.25
2011 2329 3.806625 AATTTGTGTTCACTTGCTGCT 57.193 38.095 0.00 0.00 0.00 4.24
2012 2330 4.916983 AATTTGTGTTCACTTGCTGCTA 57.083 36.364 0.00 0.00 0.00 3.49
2013 2331 3.969117 TTTGTGTTCACTTGCTGCTAG 57.031 42.857 9.53 9.53 0.00 3.42
2014 2332 2.620251 TGTGTTCACTTGCTGCTAGT 57.380 45.000 10.93 10.93 0.00 2.57
2015 2333 2.917933 TGTGTTCACTTGCTGCTAGTT 58.082 42.857 13.94 0.00 0.00 2.24
2016 2334 2.872245 TGTGTTCACTTGCTGCTAGTTC 59.128 45.455 13.94 8.48 0.00 3.01
2017 2335 3.134458 GTGTTCACTTGCTGCTAGTTCT 58.866 45.455 13.94 0.00 0.00 3.01
2018 2336 3.561725 GTGTTCACTTGCTGCTAGTTCTT 59.438 43.478 13.94 0.00 0.00 2.52
2019 2337 3.809832 TGTTCACTTGCTGCTAGTTCTTC 59.190 43.478 13.94 6.34 0.00 2.87
2020 2338 4.061596 GTTCACTTGCTGCTAGTTCTTCT 58.938 43.478 13.94 0.00 0.00 2.85
2021 2339 4.342862 TCACTTGCTGCTAGTTCTTCTT 57.657 40.909 13.94 0.00 0.00 2.52
2022 2340 4.060900 TCACTTGCTGCTAGTTCTTCTTG 58.939 43.478 13.94 2.12 0.00 3.02
2023 2341 2.810852 ACTTGCTGCTAGTTCTTCTTGC 59.189 45.455 10.93 0.00 43.25 4.01
2024 2342 2.847327 TGCTGCTAGTTCTTCTTGCT 57.153 45.000 0.00 0.00 43.33 3.91
2025 2343 3.961480 TGCTGCTAGTTCTTCTTGCTA 57.039 42.857 0.00 0.00 43.33 3.49
2026 2344 4.478206 TGCTGCTAGTTCTTCTTGCTAT 57.522 40.909 0.00 0.00 43.33 2.97
2027 2345 5.598416 TGCTGCTAGTTCTTCTTGCTATA 57.402 39.130 0.00 0.00 43.33 1.31
2028 2346 5.977635 TGCTGCTAGTTCTTCTTGCTATAA 58.022 37.500 0.00 0.00 43.33 0.98
2029 2347 5.812642 TGCTGCTAGTTCTTCTTGCTATAAC 59.187 40.000 0.00 0.00 43.33 1.89
2030 2348 5.235401 GCTGCTAGTTCTTCTTGCTATAACC 59.765 44.000 0.00 0.00 43.33 2.85
2098 2416 0.324091 TTCCCTCTGTAGTCCGGACC 60.324 60.000 30.82 17.09 0.00 4.46
2108 2426 1.375523 GTCCGGACCGCATGTTCTT 60.376 57.895 24.75 0.00 0.00 2.52
2161 2479 0.409092 TCACCCCATTTGTGCTGGAT 59.591 50.000 0.00 0.00 35.70 3.41
2162 2480 1.203162 TCACCCCATTTGTGCTGGATT 60.203 47.619 0.00 0.00 35.70 3.01
2167 2485 2.564062 CCCATTTGTGCTGGATTGAACT 59.436 45.455 0.00 0.00 35.70 3.01
2187 2510 8.220755 TGAACTTTTTACAAGTAATGCTCTGT 57.779 30.769 0.00 0.00 0.00 3.41
2212 6797 2.471815 TGTAGGATGAAGGACCGGAT 57.528 50.000 9.46 0.00 0.00 4.18
2343 6928 5.004922 TGAGTTGTTTGTCCAATTGTTCC 57.995 39.130 4.43 0.00 0.00 3.62
2429 7022 6.114187 TGTTGATTGTATTCACTGGAGTCT 57.886 37.500 0.00 0.00 0.00 3.24
2542 7135 7.226325 GGATGAAGTACCAGATGATGAGAAAAG 59.774 40.741 0.00 0.00 0.00 2.27
2622 7215 2.029844 GACTCAGTGCCGCTCAACC 61.030 63.158 0.00 0.00 0.00 3.77
3834 9201 7.341445 TGTTTTGCACAGAAGTTTAATACCT 57.659 32.000 0.00 0.00 0.00 3.08
4052 9425 6.217693 ACTTCCTTTATGATCTGTAACCCCTT 59.782 38.462 0.00 0.00 0.00 3.95
4132 9522 4.342092 ACTTGCCAAATTAACTTGCTGTCT 59.658 37.500 0.00 0.00 0.00 3.41
4487 10908 5.757850 AAGAATTAGCCGGCTATTTGAAG 57.242 39.130 36.00 0.00 0.00 3.02
4676 11133 9.528489 AGCTTAAGTACCAATTCCTGAAATAAA 57.472 29.630 4.02 0.00 0.00 1.40
4682 11139 8.971073 AGTACCAATTCCTGAAATAAAATCCAG 58.029 33.333 0.00 0.00 0.00 3.86
5012 11634 8.967918 AGTGAGCTGTACAATAGAAGTATACAA 58.032 33.333 5.50 0.00 0.00 2.41
5306 11952 7.075121 TGTTGAGTATTTTCTGTGCATAAACG 58.925 34.615 0.00 0.00 0.00 3.60
5320 11966 4.212425 TGCATAAACGTGTAAACCTCAGTG 59.788 41.667 0.00 0.00 0.00 3.66
5350 11996 3.568007 TGTGCCACTCTGGACAATTTTAC 59.432 43.478 0.00 0.00 40.96 2.01
5352 11998 4.278419 GTGCCACTCTGGACAATTTTACTT 59.722 41.667 0.00 0.00 40.96 2.24
5658 12304 0.625316 TCATCCATCACAACCCCTGG 59.375 55.000 0.00 0.00 0.00 4.45
5677 12323 1.344763 GGACCACAGGATATCGGAAGG 59.655 57.143 1.80 2.16 0.00 3.46
6089 12847 6.086222 CCACAAGGAAAACTATGAACAATCG 58.914 40.000 0.00 0.00 36.89 3.34
6216 12974 3.567397 TCTCCTAGGCTCAAGGATACAC 58.433 50.000 2.96 0.00 42.25 2.90
6490 13248 1.754226 ACCGTGCCTCAAACAACAATT 59.246 42.857 0.00 0.00 0.00 2.32
6622 13545 8.041323 TCTTCATAGAAAATGTGGAGAAGTACC 58.959 37.037 0.00 0.00 32.03 3.34
6936 13862 2.359975 GGAGGGCGGTTGAACCTG 60.360 66.667 13.18 7.28 35.66 4.00
6947 13873 3.153919 GGTTGAACCTGGAAACTATGCA 58.846 45.455 7.20 0.00 34.73 3.96
6989 13915 0.170561 TAGAGACTCGTTTGCCGCTC 59.829 55.000 0.00 0.00 36.19 5.03
6990 13916 1.080434 GAGACTCGTTTGCCGCTCT 60.080 57.895 0.00 0.00 36.19 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.394712 CCTCCGGGTGCCTGTGAC 62.395 72.222 0.00 0.00 0.00 3.67
95 96 7.817962 GCCTATTTGTTCCGTCATACTATATGT 59.182 37.037 0.00 0.00 0.00 2.29
97 98 7.903145 TGCCTATTTGTTCCGTCATACTATAT 58.097 34.615 0.00 0.00 0.00 0.86
147 148 3.630101 GAACTAATAGAGGAGTTCGGCG 58.370 50.000 0.00 0.00 41.46 6.46
151 152 3.066481 ACGGCGAACTAATAGAGGAGTTC 59.934 47.826 16.62 4.97 45.33 3.01
169 170 8.905103 AATGTATTAATTTTACAGTCAACGGC 57.095 30.769 0.00 0.00 33.36 5.68
197 198 7.489113 CCTGAGCAATATTACCACAAAACAATC 59.511 37.037 0.00 0.00 0.00 2.67
218 219 1.377333 GAAAGGGCGGGTTCCTGAG 60.377 63.158 1.37 0.00 34.34 3.35
228 229 0.034477 ACATACAAGGGGAAAGGGCG 60.034 55.000 0.00 0.00 0.00 6.13
230 231 5.703730 TTACTACATACAAGGGGAAAGGG 57.296 43.478 0.00 0.00 0.00 3.95
241 242 5.395214 CCAGCCACTCACATTACTACATACA 60.395 44.000 0.00 0.00 0.00 2.29
292 293 3.369892 GCCAGTCTAACACATCACCTCAT 60.370 47.826 0.00 0.00 0.00 2.90
312 313 3.357079 CTGTGTGCCCGACAAGCC 61.357 66.667 0.00 0.00 35.91 4.35
335 336 3.311091 AGACCGTGCTTGGGGTATATAA 58.689 45.455 0.00 0.00 36.46 0.98
339 340 1.692519 GATAGACCGTGCTTGGGGTAT 59.307 52.381 0.00 0.00 36.46 2.73
362 363 3.846588 ACATGAGATGGGGTAGTGAAGTT 59.153 43.478 0.00 0.00 33.60 2.66
368 369 3.708236 AGGTACATGAGATGGGGTAGT 57.292 47.619 0.00 0.00 33.60 2.73
373 374 2.412591 AGGGAAGGTACATGAGATGGG 58.587 52.381 0.00 0.00 33.60 4.00
385 386 3.722101 TCAAGAGGAAGAAAAGGGAAGGT 59.278 43.478 0.00 0.00 0.00 3.50
476 478 2.124695 GGGGTTCCAGGTCGATGC 60.125 66.667 0.00 0.00 0.00 3.91
480 482 2.526046 AAGGTGGGGTTCCAGGTCG 61.526 63.158 0.00 0.00 45.05 4.79
484 486 0.771127 TTCTCAAGGTGGGGTTCCAG 59.229 55.000 0.00 0.00 45.05 3.86
526 529 6.372659 AGTTGCATCATTACTTCTGGTTACTG 59.627 38.462 0.00 0.00 0.00 2.74
570 573 3.931907 TGCCCTATTACTCATTGCAGT 57.068 42.857 0.00 0.00 0.00 4.40
578 581 5.625150 AGTTTCCATGATGCCCTATTACTC 58.375 41.667 0.00 0.00 0.00 2.59
596 599 8.248117 AGCTTCATTGCATTTTTCATAGTTTC 57.752 30.769 0.00 0.00 34.99 2.78
659 663 3.538591 GTCGTCATCGTCGATTCAAAG 57.461 47.619 4.63 0.00 39.45 2.77
747 751 8.850007 TTACCAACTACACATATTTTGCACTA 57.150 30.769 0.00 0.00 0.00 2.74
748 752 7.663905 TCTTACCAACTACACATATTTTGCACT 59.336 33.333 0.00 0.00 0.00 4.40
749 753 7.812648 TCTTACCAACTACACATATTTTGCAC 58.187 34.615 0.00 0.00 0.00 4.57
753 757 8.889717 CGGATTCTTACCAACTACACATATTTT 58.110 33.333 0.00 0.00 0.00 1.82
790 796 5.786264 TTTACTCGGTCCTATGAATCTCC 57.214 43.478 0.00 0.00 0.00 3.71
805 813 6.583912 ATGTGTCGGACATAAATTTACTCG 57.416 37.500 14.78 3.04 43.96 4.18
881 890 4.898861 TCAGGCTACAAATGTTCCCTTTTT 59.101 37.500 0.00 0.00 0.00 1.94
886 895 3.763897 ACAATCAGGCTACAAATGTTCCC 59.236 43.478 0.00 0.00 0.00 3.97
890 899 4.397420 TGTCACAATCAGGCTACAAATGT 58.603 39.130 0.00 0.00 0.00 2.71
921 930 5.801947 ACATTTTGCTCAGCGATATTTTGTC 59.198 36.000 0.00 0.00 0.00 3.18
929 938 3.742369 CCAAAAACATTTTGCTCAGCGAT 59.258 39.130 9.49 0.00 0.00 4.58
936 945 6.405619 CCAATGGAAACCAAAAACATTTTGCT 60.406 34.615 9.49 0.00 36.95 3.91
943 952 6.985653 TCTATCCAATGGAAACCAAAAACA 57.014 33.333 5.89 0.00 36.95 2.83
947 956 7.847711 TTCTTTCTATCCAATGGAAACCAAA 57.152 32.000 5.89 2.74 36.95 3.28
948 957 7.847711 TTTCTTTCTATCCAATGGAAACCAA 57.152 32.000 5.89 0.00 36.95 3.67
980 989 4.318760 CCATGTGATAAACTTACGCGATGG 60.319 45.833 15.93 6.67 0.00 3.51
992 1001 7.148086 GCAGTACAAAATCTCCCATGTGATAAA 60.148 37.037 0.00 0.00 0.00 1.40
1010 1019 5.378292 TTGTTCAAACTTGTGCAGTACAA 57.622 34.783 3.84 3.84 46.62 2.41
1011 1020 5.378292 TTTGTTCAAACTTGTGCAGTACA 57.622 34.783 0.00 0.00 32.94 2.90
1012 1021 7.165812 CAGTATTTGTTCAAACTTGTGCAGTAC 59.834 37.037 0.00 0.00 32.94 2.73
1013 1022 7.148154 ACAGTATTTGTTCAAACTTGTGCAGTA 60.148 33.333 0.00 0.00 36.31 2.74
1014 1023 6.035843 CAGTATTTGTTCAAACTTGTGCAGT 58.964 36.000 0.00 0.00 37.30 4.40
1015 1024 6.020440 CACAGTATTTGTTCAAACTTGTGCAG 60.020 38.462 17.12 2.79 38.16 4.41
1020 1029 6.795399 AGGACACAGTATTTGTTCAAACTTG 58.205 36.000 0.00 3.00 38.16 3.16
1025 1034 5.361427 TCGAAGGACACAGTATTTGTTCAA 58.639 37.500 0.00 0.00 38.16 2.69
1036 1045 3.396260 TTTTACCCTCGAAGGACACAG 57.604 47.619 7.17 0.00 37.67 3.66
1095 1105 7.390440 GGCATATTTATACTGCTGTATTGTCCA 59.610 37.037 19.73 0.82 39.77 4.02
1120 1130 4.722700 CCAGGGACCCAACTGCGG 62.723 72.222 14.60 0.00 33.43 5.69
1121 1131 3.612247 CTCCAGGGACCCAACTGCG 62.612 68.421 14.60 0.00 33.43 5.18
1608 1695 1.078708 CCCGCGAGTACCAAACCAT 60.079 57.895 8.23 0.00 0.00 3.55
1714 1801 3.171828 TTGCAGAAGGGTCCGCGAA 62.172 57.895 8.23 0.00 0.00 4.70
1844 2162 2.038557 TCCTCAGCTTACCAAGTCAACC 59.961 50.000 0.00 0.00 0.00 3.77
1845 2163 3.402628 TCCTCAGCTTACCAAGTCAAC 57.597 47.619 0.00 0.00 0.00 3.18
1846 2164 5.451937 CGATATCCTCAGCTTACCAAGTCAA 60.452 44.000 0.00 0.00 0.00 3.18
1847 2165 4.038042 CGATATCCTCAGCTTACCAAGTCA 59.962 45.833 0.00 0.00 0.00 3.41
1848 2166 4.551388 CGATATCCTCAGCTTACCAAGTC 58.449 47.826 0.00 0.00 0.00 3.01
1849 2167 3.322254 CCGATATCCTCAGCTTACCAAGT 59.678 47.826 0.00 0.00 0.00 3.16
1850 2168 3.322254 ACCGATATCCTCAGCTTACCAAG 59.678 47.826 0.00 0.00 0.00 3.61
1851 2169 3.069586 CACCGATATCCTCAGCTTACCAA 59.930 47.826 0.00 0.00 0.00 3.67
1852 2170 2.628178 CACCGATATCCTCAGCTTACCA 59.372 50.000 0.00 0.00 0.00 3.25
1853 2171 2.028930 CCACCGATATCCTCAGCTTACC 60.029 54.545 0.00 0.00 0.00 2.85
1854 2172 2.610727 GCCACCGATATCCTCAGCTTAC 60.611 54.545 0.00 0.00 0.00 2.34
1855 2173 1.618837 GCCACCGATATCCTCAGCTTA 59.381 52.381 0.00 0.00 0.00 3.09
1856 2174 0.394565 GCCACCGATATCCTCAGCTT 59.605 55.000 0.00 0.00 0.00 3.74
1857 2175 0.760567 TGCCACCGATATCCTCAGCT 60.761 55.000 0.00 0.00 0.00 4.24
1858 2176 0.106708 TTGCCACCGATATCCTCAGC 59.893 55.000 0.00 0.00 0.00 4.26
1859 2177 1.688735 TCTTGCCACCGATATCCTCAG 59.311 52.381 0.00 0.00 0.00 3.35
1860 2178 1.688735 CTCTTGCCACCGATATCCTCA 59.311 52.381 0.00 0.00 0.00 3.86
1861 2179 1.964223 TCTCTTGCCACCGATATCCTC 59.036 52.381 0.00 0.00 0.00 3.71
1862 2180 2.088104 TCTCTTGCCACCGATATCCT 57.912 50.000 0.00 0.00 0.00 3.24
1863 2181 2.484889 GTTCTCTTGCCACCGATATCC 58.515 52.381 0.00 0.00 0.00 2.59
1864 2182 2.103263 AGGTTCTCTTGCCACCGATATC 59.897 50.000 0.00 0.00 35.54 1.63
1865 2183 2.119495 AGGTTCTCTTGCCACCGATAT 58.881 47.619 0.00 0.00 35.54 1.63
1866 2184 1.568504 AGGTTCTCTTGCCACCGATA 58.431 50.000 0.00 0.00 35.54 2.92
1867 2185 1.568504 TAGGTTCTCTTGCCACCGAT 58.431 50.000 0.00 0.00 35.54 4.18
1868 2186 1.275291 CTTAGGTTCTCTTGCCACCGA 59.725 52.381 0.00 0.00 35.54 4.69
1869 2187 1.676014 CCTTAGGTTCTCTTGCCACCG 60.676 57.143 0.00 0.00 35.54 4.94
1870 2188 1.628846 TCCTTAGGTTCTCTTGCCACC 59.371 52.381 0.00 0.00 0.00 4.61
1871 2189 3.636153 ATCCTTAGGTTCTCTTGCCAC 57.364 47.619 0.00 0.00 0.00 5.01
1872 2190 4.567747 GGAAATCCTTAGGTTCTCTTGCCA 60.568 45.833 0.00 0.00 0.00 4.92
1873 2191 3.948473 GGAAATCCTTAGGTTCTCTTGCC 59.052 47.826 0.00 0.00 0.00 4.52
1874 2192 3.948473 GGGAAATCCTTAGGTTCTCTTGC 59.052 47.826 0.00 0.00 35.95 4.01
1875 2193 5.443230 AGGGAAATCCTTAGGTTCTCTTG 57.557 43.478 0.00 0.00 45.47 3.02
1888 2206 1.413077 CCGGACTACAGAGGGAAATCC 59.587 57.143 0.00 0.00 0.00 3.01
1889 2207 2.101082 GTCCGGACTACAGAGGGAAATC 59.899 54.545 27.64 0.00 0.00 2.17
1890 2208 2.108970 GTCCGGACTACAGAGGGAAAT 58.891 52.381 27.64 0.00 0.00 2.17
1891 2209 1.553706 GTCCGGACTACAGAGGGAAA 58.446 55.000 27.64 0.00 0.00 3.13
1892 2210 0.679002 CGTCCGGACTACAGAGGGAA 60.679 60.000 30.92 0.00 0.00 3.97
1893 2211 1.077930 CGTCCGGACTACAGAGGGA 60.078 63.158 30.92 0.00 0.00 4.20
1894 2212 0.465824 ATCGTCCGGACTACAGAGGG 60.466 60.000 30.92 13.74 0.00 4.30
1895 2213 0.663688 CATCGTCCGGACTACAGAGG 59.336 60.000 30.92 18.59 0.00 3.69
1896 2214 1.600013 CTCATCGTCCGGACTACAGAG 59.400 57.143 30.92 24.25 0.00 3.35
1897 2215 1.664873 CTCATCGTCCGGACTACAGA 58.335 55.000 30.92 20.99 0.00 3.41
1898 2216 0.663688 CCTCATCGTCCGGACTACAG 59.336 60.000 30.92 18.84 0.00 2.74
1899 2217 0.253894 TCCTCATCGTCCGGACTACA 59.746 55.000 30.92 15.83 0.00 2.74
1900 2218 1.606903 ATCCTCATCGTCCGGACTAC 58.393 55.000 30.92 7.41 0.00 2.73
1901 2219 1.954382 CAATCCTCATCGTCCGGACTA 59.046 52.381 30.92 22.13 0.00 2.59
1902 2220 0.747255 CAATCCTCATCGTCCGGACT 59.253 55.000 30.92 12.01 0.00 3.85
1903 2221 0.876342 GCAATCCTCATCGTCCGGAC 60.876 60.000 25.28 25.28 0.00 4.79
1904 2222 1.043116 AGCAATCCTCATCGTCCGGA 61.043 55.000 0.00 0.00 0.00 5.14
1905 2223 0.598680 GAGCAATCCTCATCGTCCGG 60.599 60.000 0.00 0.00 40.45 5.14
1906 2224 0.387202 AGAGCAATCCTCATCGTCCG 59.613 55.000 0.00 0.00 43.31 4.79
1907 2225 1.863267 CAGAGCAATCCTCATCGTCC 58.137 55.000 0.00 0.00 43.31 4.79
1908 2226 1.216122 GCAGAGCAATCCTCATCGTC 58.784 55.000 0.00 0.00 43.31 4.20
1909 2227 0.179062 GGCAGAGCAATCCTCATCGT 60.179 55.000 0.00 0.00 43.31 3.73
1910 2228 0.179065 TGGCAGAGCAATCCTCATCG 60.179 55.000 0.00 0.00 43.31 3.84
1911 2229 2.273538 ATGGCAGAGCAATCCTCATC 57.726 50.000 0.00 0.00 43.31 2.92
1912 2230 2.750141 AATGGCAGAGCAATCCTCAT 57.250 45.000 0.00 0.00 43.31 2.90
1913 2231 2.494471 CAAAATGGCAGAGCAATCCTCA 59.506 45.455 0.00 0.00 43.31 3.86
1914 2232 2.494870 ACAAAATGGCAGAGCAATCCTC 59.505 45.455 0.00 0.00 41.07 3.71
1915 2233 2.532843 ACAAAATGGCAGAGCAATCCT 58.467 42.857 0.00 0.00 0.00 3.24
1916 2234 3.181483 CCTACAAAATGGCAGAGCAATCC 60.181 47.826 0.00 0.00 0.00 3.01
1917 2235 3.696051 TCCTACAAAATGGCAGAGCAATC 59.304 43.478 0.00 0.00 0.00 2.67
1918 2236 3.700538 TCCTACAAAATGGCAGAGCAAT 58.299 40.909 0.00 0.00 0.00 3.56
1919 2237 3.153369 TCCTACAAAATGGCAGAGCAA 57.847 42.857 0.00 0.00 0.00 3.91
1920 2238 2.877097 TCCTACAAAATGGCAGAGCA 57.123 45.000 0.00 0.00 0.00 4.26
1921 2239 3.282021 TCATCCTACAAAATGGCAGAGC 58.718 45.455 0.00 0.00 0.00 4.09
1922 2240 4.337555 CCTTCATCCTACAAAATGGCAGAG 59.662 45.833 0.00 0.00 0.00 3.35
1923 2241 4.018506 TCCTTCATCCTACAAAATGGCAGA 60.019 41.667 0.00 0.00 0.00 4.26
1924 2242 4.096984 GTCCTTCATCCTACAAAATGGCAG 59.903 45.833 0.00 0.00 0.00 4.85
1925 2243 4.016444 GTCCTTCATCCTACAAAATGGCA 58.984 43.478 0.00 0.00 0.00 4.92
1926 2244 3.381590 GGTCCTTCATCCTACAAAATGGC 59.618 47.826 0.00 0.00 0.00 4.40
1927 2245 3.627577 CGGTCCTTCATCCTACAAAATGG 59.372 47.826 0.00 0.00 0.00 3.16
1928 2246 3.627577 CCGGTCCTTCATCCTACAAAATG 59.372 47.826 0.00 0.00 0.00 2.32
1929 2247 3.521937 TCCGGTCCTTCATCCTACAAAAT 59.478 43.478 0.00 0.00 0.00 1.82
1930 2248 2.907696 TCCGGTCCTTCATCCTACAAAA 59.092 45.455 0.00 0.00 0.00 2.44
1931 2249 2.542550 TCCGGTCCTTCATCCTACAAA 58.457 47.619 0.00 0.00 0.00 2.83
1932 2250 2.241281 TCCGGTCCTTCATCCTACAA 57.759 50.000 0.00 0.00 0.00 2.41
1933 2251 2.039418 CATCCGGTCCTTCATCCTACA 58.961 52.381 0.00 0.00 0.00 2.74
1934 2252 2.317040 TCATCCGGTCCTTCATCCTAC 58.683 52.381 0.00 0.00 0.00 3.18
1935 2253 2.767644 TCATCCGGTCCTTCATCCTA 57.232 50.000 0.00 0.00 0.00 2.94
1936 2254 1.696336 CATCATCCGGTCCTTCATCCT 59.304 52.381 0.00 0.00 0.00 3.24
1937 2255 1.694150 TCATCATCCGGTCCTTCATCC 59.306 52.381 0.00 0.00 0.00 3.51
1938 2256 2.289320 CCTCATCATCCGGTCCTTCATC 60.289 54.545 0.00 0.00 0.00 2.92
1939 2257 1.696336 CCTCATCATCCGGTCCTTCAT 59.304 52.381 0.00 0.00 0.00 2.57
1940 2258 1.123077 CCTCATCATCCGGTCCTTCA 58.877 55.000 0.00 0.00 0.00 3.02
1941 2259 1.414158 TCCTCATCATCCGGTCCTTC 58.586 55.000 0.00 0.00 0.00 3.46
1942 2260 2.105477 CAATCCTCATCATCCGGTCCTT 59.895 50.000 0.00 0.00 0.00 3.36
1943 2261 1.696336 CAATCCTCATCATCCGGTCCT 59.304 52.381 0.00 0.00 0.00 3.85
1944 2262 1.271054 CCAATCCTCATCATCCGGTCC 60.271 57.143 0.00 0.00 0.00 4.46
1945 2263 1.879796 GCCAATCCTCATCATCCGGTC 60.880 57.143 0.00 0.00 0.00 4.79
1946 2264 0.109342 GCCAATCCTCATCATCCGGT 59.891 55.000 0.00 0.00 0.00 5.28
1947 2265 0.109153 TGCCAATCCTCATCATCCGG 59.891 55.000 0.00 0.00 0.00 5.14
1948 2266 1.520494 CTGCCAATCCTCATCATCCG 58.480 55.000 0.00 0.00 0.00 4.18
1949 2267 1.422781 TCCTGCCAATCCTCATCATCC 59.577 52.381 0.00 0.00 0.00 3.51
1950 2268 2.552591 CCTCCTGCCAATCCTCATCATC 60.553 54.545 0.00 0.00 0.00 2.92
1951 2269 1.424302 CCTCCTGCCAATCCTCATCAT 59.576 52.381 0.00 0.00 0.00 2.45
1952 2270 0.841961 CCTCCTGCCAATCCTCATCA 59.158 55.000 0.00 0.00 0.00 3.07
1953 2271 0.842635 ACCTCCTGCCAATCCTCATC 59.157 55.000 0.00 0.00 0.00 2.92
1954 2272 0.549950 CACCTCCTGCCAATCCTCAT 59.450 55.000 0.00 0.00 0.00 2.90
1955 2273 1.565390 CCACCTCCTGCCAATCCTCA 61.565 60.000 0.00 0.00 0.00 3.86
1956 2274 1.225704 CCACCTCCTGCCAATCCTC 59.774 63.158 0.00 0.00 0.00 3.71
1957 2275 2.988839 GCCACCTCCTGCCAATCCT 61.989 63.158 0.00 0.00 0.00 3.24
1958 2276 2.440980 GCCACCTCCTGCCAATCC 60.441 66.667 0.00 0.00 0.00 3.01
1959 2277 1.751927 CTGCCACCTCCTGCCAATC 60.752 63.158 0.00 0.00 0.00 2.67
1960 2278 1.578215 ATCTGCCACCTCCTGCCAAT 61.578 55.000 0.00 0.00 0.00 3.16
1961 2279 2.233566 ATCTGCCACCTCCTGCCAA 61.234 57.895 0.00 0.00 0.00 4.52
1962 2280 2.611800 ATCTGCCACCTCCTGCCA 60.612 61.111 0.00 0.00 0.00 4.92
1963 2281 1.992519 ATCATCTGCCACCTCCTGCC 61.993 60.000 0.00 0.00 0.00 4.85
1964 2282 0.818445 CATCATCTGCCACCTCCTGC 60.818 60.000 0.00 0.00 0.00 4.85
1965 2283 0.835276 TCATCATCTGCCACCTCCTG 59.165 55.000 0.00 0.00 0.00 3.86
1966 2284 1.129917 CTCATCATCTGCCACCTCCT 58.870 55.000 0.00 0.00 0.00 3.69
1967 2285 0.108207 CCTCATCATCTGCCACCTCC 59.892 60.000 0.00 0.00 0.00 4.30
1968 2286 0.835941 ACCTCATCATCTGCCACCTC 59.164 55.000 0.00 0.00 0.00 3.85
1969 2287 0.545171 CACCTCATCATCTGCCACCT 59.455 55.000 0.00 0.00 0.00 4.00
1970 2288 0.543277 TCACCTCATCATCTGCCACC 59.457 55.000 0.00 0.00 0.00 4.61
1971 2289 2.408271 TTCACCTCATCATCTGCCAC 57.592 50.000 0.00 0.00 0.00 5.01
1972 2290 3.438216 TTTTCACCTCATCATCTGCCA 57.562 42.857 0.00 0.00 0.00 4.92
1973 2291 4.996788 AATTTTCACCTCATCATCTGCC 57.003 40.909 0.00 0.00 0.00 4.85
1974 2292 5.575606 CACAAATTTTCACCTCATCATCTGC 59.424 40.000 0.00 0.00 0.00 4.26
1975 2293 6.684686 ACACAAATTTTCACCTCATCATCTG 58.315 36.000 0.00 0.00 0.00 2.90
1976 2294 6.906157 ACACAAATTTTCACCTCATCATCT 57.094 33.333 0.00 0.00 0.00 2.90
1977 2295 7.115378 GTGAACACAAATTTTCACCTCATCATC 59.885 37.037 8.84 0.00 43.90 2.92
1978 2296 6.925165 GTGAACACAAATTTTCACCTCATCAT 59.075 34.615 8.84 0.00 43.90 2.45
1979 2297 6.272318 GTGAACACAAATTTTCACCTCATCA 58.728 36.000 8.84 0.00 43.90 3.07
1980 2298 6.753897 GTGAACACAAATTTTCACCTCATC 57.246 37.500 8.84 0.00 43.90 2.92
1987 2305 4.329528 GCAGCAAGTGAACACAAATTTTCA 59.670 37.500 7.68 0.00 0.00 2.69
1988 2306 4.567959 AGCAGCAAGTGAACACAAATTTTC 59.432 37.500 7.68 0.00 0.00 2.29
1989 2307 4.506758 AGCAGCAAGTGAACACAAATTTT 58.493 34.783 7.68 0.00 0.00 1.82
1990 2308 4.127566 AGCAGCAAGTGAACACAAATTT 57.872 36.364 7.68 0.00 0.00 1.82
1991 2309 3.806625 AGCAGCAAGTGAACACAAATT 57.193 38.095 7.68 0.00 0.00 1.82
1992 2310 3.885297 ACTAGCAGCAAGTGAACACAAAT 59.115 39.130 7.68 0.00 0.00 2.32
1993 2311 3.278574 ACTAGCAGCAAGTGAACACAAA 58.721 40.909 7.68 0.00 0.00 2.83
1994 2312 2.917933 ACTAGCAGCAAGTGAACACAA 58.082 42.857 7.68 0.00 0.00 3.33
1995 2313 2.620251 ACTAGCAGCAAGTGAACACA 57.380 45.000 7.68 0.00 0.00 3.72
1996 2314 3.134458 AGAACTAGCAGCAAGTGAACAC 58.866 45.455 0.00 0.00 0.00 3.32
1997 2315 3.475566 AGAACTAGCAGCAAGTGAACA 57.524 42.857 0.00 0.00 0.00 3.18
1998 2316 4.061596 AGAAGAACTAGCAGCAAGTGAAC 58.938 43.478 0.00 0.00 0.00 3.18
1999 2317 4.342862 AGAAGAACTAGCAGCAAGTGAA 57.657 40.909 0.00 0.00 0.00 3.18
2000 2318 4.060900 CAAGAAGAACTAGCAGCAAGTGA 58.939 43.478 0.00 0.00 0.00 3.41
2001 2319 3.364764 GCAAGAAGAACTAGCAGCAAGTG 60.365 47.826 0.00 0.00 0.00 3.16
2002 2320 2.810852 GCAAGAAGAACTAGCAGCAAGT 59.189 45.455 0.00 0.00 0.00 3.16
2003 2321 3.072944 AGCAAGAAGAACTAGCAGCAAG 58.927 45.455 0.00 0.00 0.00 4.01
2004 2322 3.131709 AGCAAGAAGAACTAGCAGCAA 57.868 42.857 0.00 0.00 0.00 3.91
2005 2323 2.847327 AGCAAGAAGAACTAGCAGCA 57.153 45.000 0.00 0.00 0.00 4.41
2006 2324 5.235401 GGTTATAGCAAGAAGAACTAGCAGC 59.765 44.000 0.00 0.00 0.00 5.25
2007 2325 5.460419 CGGTTATAGCAAGAAGAACTAGCAG 59.540 44.000 0.00 0.00 0.00 4.24
2008 2326 5.348986 CGGTTATAGCAAGAAGAACTAGCA 58.651 41.667 0.00 0.00 0.00 3.49
2009 2327 4.745620 CCGGTTATAGCAAGAAGAACTAGC 59.254 45.833 0.00 0.00 0.00 3.42
2010 2328 5.903810 ACCGGTTATAGCAAGAAGAACTAG 58.096 41.667 0.00 0.00 0.00 2.57
2011 2329 5.927281 ACCGGTTATAGCAAGAAGAACTA 57.073 39.130 0.00 0.00 0.00 2.24
2012 2330 4.820894 ACCGGTTATAGCAAGAAGAACT 57.179 40.909 0.00 0.00 0.00 3.01
2013 2331 4.933400 TCAACCGGTTATAGCAAGAAGAAC 59.067 41.667 21.79 0.00 0.00 3.01
2014 2332 4.933400 GTCAACCGGTTATAGCAAGAAGAA 59.067 41.667 21.79 0.00 0.00 2.52
2015 2333 4.222145 AGTCAACCGGTTATAGCAAGAAGA 59.778 41.667 21.79 6.02 0.00 2.87
2016 2334 4.504858 AGTCAACCGGTTATAGCAAGAAG 58.495 43.478 21.79 3.36 0.00 2.85
2017 2335 4.546829 AGTCAACCGGTTATAGCAAGAA 57.453 40.909 21.79 0.00 0.00 2.52
2018 2336 4.250464 CAAGTCAACCGGTTATAGCAAGA 58.750 43.478 21.79 8.44 0.00 3.02
2019 2337 3.374058 CCAAGTCAACCGGTTATAGCAAG 59.626 47.826 21.79 5.81 0.00 4.01
2020 2338 3.244630 ACCAAGTCAACCGGTTATAGCAA 60.245 43.478 21.79 0.00 0.00 3.91
2021 2339 2.303600 ACCAAGTCAACCGGTTATAGCA 59.696 45.455 21.79 0.00 0.00 3.49
2022 2340 2.981898 ACCAAGTCAACCGGTTATAGC 58.018 47.619 21.79 10.28 0.00 2.97
2023 2341 4.872124 GGTTACCAAGTCAACCGGTTATAG 59.128 45.833 21.79 8.30 35.23 1.31
2024 2342 4.831107 GGTTACCAAGTCAACCGGTTATA 58.169 43.478 21.79 8.63 35.23 0.98
2025 2343 3.678289 GGTTACCAAGTCAACCGGTTAT 58.322 45.455 21.79 6.26 35.23 1.89
2026 2344 3.124578 GGTTACCAAGTCAACCGGTTA 57.875 47.619 21.79 5.94 35.23 2.85
2027 2345 1.971481 GGTTACCAAGTCAACCGGTT 58.029 50.000 15.86 15.86 35.23 4.44
2028 2346 3.711937 GGTTACCAAGTCAACCGGT 57.288 52.632 0.00 0.00 35.23 5.28
2098 2416 1.139163 GCCAAAACCAAGAACATGCG 58.861 50.000 0.00 0.00 0.00 4.73
2108 2426 5.096443 AGAAAAATGTTCAGCCAAAACCA 57.904 34.783 0.00 0.00 0.00 3.67
2161 2479 8.682710 ACAGAGCATTACTTGTAAAAAGTTCAA 58.317 29.630 0.00 0.00 0.00 2.69
2162 2480 8.220755 ACAGAGCATTACTTGTAAAAAGTTCA 57.779 30.769 0.00 0.00 0.00 3.18
2187 2510 4.513442 CGGTCCTTCATCCTACAAAATGA 58.487 43.478 0.00 0.00 0.00 2.57
2212 6797 1.833630 ACCTCCTGCGAATTCTCATCA 59.166 47.619 3.52 0.00 0.00 3.07
2343 6928 5.068460 ACATCCTTCTCTAGGTTCAGATTCG 59.932 44.000 0.00 0.00 45.03 3.34
2429 7022 3.120321 ACAAGCGTGGTTACTGATTCA 57.880 42.857 4.26 0.00 0.00 2.57
2542 7135 4.222114 GCTCATGAACAACAAAGTGTAGC 58.778 43.478 0.00 0.00 0.00 3.58
3022 7617 5.461032 AACTGACAAATTTTATTCCCGCA 57.539 34.783 0.00 0.00 0.00 5.69
3163 8513 6.872020 CGAAGAGTAAGTTCCAGTTTCCATTA 59.128 38.462 0.00 0.00 0.00 1.90
3834 9201 4.100344 GGTTTTCCTGTTTAAAAGCCTCCA 59.900 41.667 0.00 0.00 38.01 3.86
4132 9522 5.497464 TGGACAATTCAGGACACATAAGA 57.503 39.130 0.00 0.00 0.00 2.10
4270 10423 1.801178 GCAAGGCTCACTGTAGTTCAC 59.199 52.381 0.00 0.00 0.00 3.18
4487 10908 7.118390 AGTCTGTTTTGTCTACATACTCAATGC 59.882 37.037 0.00 0.00 39.39 3.56
4867 11469 8.722480 TCAAGGAATATCACTACAGAACATTG 57.278 34.615 0.00 0.00 0.00 2.82
4973 11595 4.912586 ACAGCTCACTAGAACTCAGACTA 58.087 43.478 0.00 0.00 0.00 2.59
4986 11608 8.521170 TGTATACTTCTATTGTACAGCTCACT 57.479 34.615 4.17 0.00 0.00 3.41
4987 11609 9.239002 CTTGTATACTTCTATTGTACAGCTCAC 57.761 37.037 4.17 0.00 0.00 3.51
5012 11634 0.323816 TCCTGAGTGGCACGATCTCT 60.324 55.000 12.71 0.00 35.26 3.10
5048 11673 9.429359 ACAAGTAGACAAAGAACATATCTCAAG 57.571 33.333 0.00 0.00 37.42 3.02
5049 11674 9.778741 AACAAGTAGACAAAGAACATATCTCAA 57.221 29.630 0.00 0.00 37.42 3.02
5058 11683 8.819643 ATACAGAGAACAAGTAGACAAAGAAC 57.180 34.615 0.00 0.00 0.00 3.01
5061 11686 9.692749 TGTTATACAGAGAACAAGTAGACAAAG 57.307 33.333 0.00 0.00 33.91 2.77
5281 11927 7.075121 CGTTTATGCACAGAAAATACTCAACA 58.925 34.615 0.00 0.00 0.00 3.33
5306 11952 7.043656 GCACAATTTTAACACTGAGGTTTACAC 60.044 37.037 0.00 0.00 32.29 2.90
5320 11966 4.037446 TGTCCAGAGTGGCACAATTTTAAC 59.963 41.667 21.41 9.18 44.16 2.01
5352 11998 8.606602 CGTCATGATTATCTCATTTCAGTTCAA 58.393 33.333 0.00 0.00 42.07 2.69
5555 12201 1.522668 CGCTCCACTTGAATTCCACA 58.477 50.000 2.27 0.00 0.00 4.17
5658 12304 1.344763 CCCTTCCGATATCCTGTGGTC 59.655 57.143 0.00 0.00 0.00 4.02
5677 12323 3.063997 CGTCAGATGATAACAAGTTGCCC 59.936 47.826 1.81 0.00 0.00 5.36
5817 12463 7.904558 TCACTAGATTTCTACACCATCATCT 57.095 36.000 0.00 0.00 0.00 2.90
5999 12713 7.761038 AAAACGAATAACTCCTTGGAGAAAT 57.239 32.000 22.10 11.88 0.00 2.17
6184 12942 3.100671 AGCCTAGGAGAAACAGACGATT 58.899 45.455 14.75 0.00 0.00 3.34
6187 12945 1.819288 TGAGCCTAGGAGAAACAGACG 59.181 52.381 14.75 0.00 0.00 4.18
6251 13009 6.169419 TCAATACTTGCAGATTCAGTTTCG 57.831 37.500 0.00 0.00 0.00 3.46
6390 13148 5.221641 TGCTATCGGGACATTATAGTGCTTT 60.222 40.000 0.00 0.00 0.00 3.51
6446 13204 1.135859 CGAGCAAAATGGTGACTCTGC 60.136 52.381 0.00 0.00 0.00 4.26
6490 13248 5.718146 TGAAGAAAAGACAAACATGCAACA 58.282 33.333 0.00 0.00 0.00 3.33
6556 13314 3.507162 ACAGATCCACACCATGACAAA 57.493 42.857 0.00 0.00 0.00 2.83
6622 13545 4.201724 GCTCATAACGACTAAGTTTGCAGG 60.202 45.833 0.00 0.00 35.70 4.85
6662 13585 3.025322 TCACCCAACCATTGTTTCACT 57.975 42.857 0.00 0.00 30.42 3.41
6712 13635 3.001634 CGAAACAAGATGATCATCCACCG 59.998 47.826 28.23 19.21 38.58 4.94
6713 13636 4.191544 TCGAAACAAGATGATCATCCACC 58.808 43.478 28.23 13.01 38.58 4.61
6928 13854 3.153919 GGTGCATAGTTTCCAGGTTCAA 58.846 45.455 0.00 0.00 0.00 2.69
6936 13862 1.812571 CACACCAGGTGCATAGTTTCC 59.187 52.381 20.48 0.00 41.36 3.13
6947 13873 2.083774 CGTATTTCATGCACACCAGGT 58.916 47.619 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.