Multiple sequence alignment - TraesCS2D01G072900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G072900 chr2D 100.000 6069 0 0 1 6069 30546333 30552401 0.000000e+00 11208.0
1 TraesCS2D01G072900 chr2D 91.056 928 70 9 2699 3617 22466032 22466955 0.000000e+00 1242.0
2 TraesCS2D01G072900 chr2D 90.333 931 81 7 2699 3622 22431673 22430745 0.000000e+00 1212.0
3 TraesCS2D01G072900 chr2D 83.979 749 79 14 1602 2344 22432727 22432014 0.000000e+00 680.0
4 TraesCS2D01G072900 chr2D 83.024 754 83 21 1602 2345 22464974 22465692 5.130000e-180 641.0
5 TraesCS2D01G072900 chr2D 89.453 512 20 18 364 843 325996448 325996957 3.110000e-172 616.0
6 TraesCS2D01G072900 chr2D 89.706 476 45 4 4105 4578 22429529 22429056 6.730000e-169 604.0
7 TraesCS2D01G072900 chr2D 87.984 516 57 3 4066 4578 22468127 22468640 6.730000e-169 604.0
8 TraesCS2D01G072900 chr2D 87.719 513 23 14 364 841 543735214 543734707 4.110000e-156 562.0
9 TraesCS2D01G072900 chr2D 97.170 318 9 0 1 318 605361326 605361009 6.920000e-149 538.0
10 TraesCS2D01G072900 chr2D 85.680 412 54 2 4677 5087 22468764 22469171 4.350000e-116 429.0
11 TraesCS2D01G072900 chr2D 84.951 412 57 2 4677 5087 22428934 22428527 4.380000e-111 412.0
12 TraesCS2D01G072900 chr2D 78.436 422 75 13 4094 4510 30587942 30588352 1.680000e-65 261.0
13 TraesCS2D01G072900 chr2D 79.394 330 43 14 3734 4047 22430383 22430063 6.160000e-50 209.0
14 TraesCS2D01G072900 chr2D 82.353 255 32 9 5141 5387 22469269 22469518 6.160000e-50 209.0
15 TraesCS2D01G072900 chr2D 80.255 157 20 9 3853 4005 22467442 22467591 2.310000e-19 108.0
16 TraesCS2D01G072900 chr2D 100.000 54 0 0 318 371 10653253 10653306 3.870000e-17 100.0
17 TraesCS2D01G072900 chr2D 95.238 63 3 0 318 380 565056128 565056066 3.870000e-17 100.0
18 TraesCS2D01G072900 chr2D 90.741 54 5 0 3175 3228 630047781 630047834 8.440000e-09 73.1
19 TraesCS2D01G072900 chr2D 94.737 38 1 1 4579 4615 22429007 22428970 2.360000e-04 58.4
20 TraesCS2D01G072900 chr2D 94.737 38 1 1 4579 4615 22468685 22468722 2.360000e-04 58.4
21 TraesCS2D01G072900 chr2B 94.608 2170 88 15 1900 4062 50287871 50290018 0.000000e+00 3332.0
22 TraesCS2D01G072900 chr2B 95.025 1407 47 4 4067 5472 50290482 50291866 0.000000e+00 2189.0
23 TraesCS2D01G072900 chr2B 89.463 968 48 17 867 1808 50286824 50287763 0.000000e+00 1173.0
24 TraesCS2D01G072900 chr2B 88.780 918 71 18 2699 3609 39369044 39369936 0.000000e+00 1096.0
25 TraesCS2D01G072900 chr2B 85.092 758 76 15 1602 2345 39368025 39368759 0.000000e+00 739.0
26 TraesCS2D01G072900 chr2B 87.476 519 56 4 4067 4578 39371170 39371686 1.880000e-164 590.0
27 TraesCS2D01G072900 chr2B 84.709 412 58 2 4677 5087 39371810 39372217 2.040000e-109 407.0
28 TraesCS2D01G072900 chr2B 78.475 446 81 13 4069 4510 50348982 50349416 1.670000e-70 278.0
29 TraesCS2D01G072900 chr2B 88.596 228 21 4 5504 5727 50291965 50292191 7.750000e-69 272.0
30 TraesCS2D01G072900 chr2B 76.144 612 76 43 865 1445 39206543 39205971 2.170000e-64 257.0
31 TraesCS2D01G072900 chr2B 92.857 70 5 0 1893 1962 50287796 50287865 1.080000e-17 102.0
32 TraesCS2D01G072900 chr2B 85.567 97 5 8 292 379 790820579 790820483 6.480000e-15 93.5
33 TraesCS2D01G072900 chr2B 94.737 38 1 1 4579 4615 39371731 39371768 2.360000e-04 58.4
34 TraesCS2D01G072900 chr2A 93.598 1765 76 15 2310 4062 32529457 32531196 0.000000e+00 2599.0
35 TraesCS2D01G072900 chr2A 90.674 1469 84 24 872 2327 32527854 32529282 0.000000e+00 1905.0
36 TraesCS2D01G072900 chr2A 94.811 925 28 4 4588 5510 32532281 32533187 0.000000e+00 1424.0
37 TraesCS2D01G072900 chr2A 89.519 935 82 12 2699 3622 24163790 24162861 0.000000e+00 1170.0
38 TraesCS2D01G072900 chr2A 95.902 610 20 2 4067 4676 32531679 32532283 0.000000e+00 983.0
39 TraesCS2D01G072900 chr2A 94.943 435 17 3 5503 5934 32533230 32533662 0.000000e+00 676.0
40 TraesCS2D01G072900 chr2A 82.800 750 83 21 1602 2345 24164601 24163892 3.990000e-176 628.0
41 TraesCS2D01G072900 chr2A 88.327 514 54 4 4067 4578 24161329 24160820 4.020000e-171 612.0
42 TraesCS2D01G072900 chr2A 87.857 420 31 11 440 843 758703057 758702642 5.500000e-130 475.0
43 TraesCS2D01G072900 chr2A 85.591 347 49 1 4726 5071 24160752 24160406 4.470000e-96 363.0
44 TraesCS2D01G072900 chr2A 79.324 503 49 30 969 1445 24165721 24165248 9.890000e-78 302.0
45 TraesCS2D01G072900 chr2A 77.412 425 72 13 4069 4477 32544345 32544761 1.320000e-56 231.0
46 TraesCS2D01G072900 chr2A 92.143 140 10 1 5930 6069 32534004 32534142 4.800000e-46 196.0
47 TraesCS2D01G072900 chr2A 79.618 157 21 9 3853 4005 24162010 24161861 1.080000e-17 102.0
48 TraesCS2D01G072900 chr2A 96.774 62 1 1 318 379 684426959 684427019 1.080000e-17 102.0
49 TraesCS2D01G072900 chr2A 88.750 80 7 2 292 370 270118018 270118096 5.010000e-16 97.1
50 TraesCS2D01G072900 chr2A 86.316 95 5 8 292 378 688149609 688149703 5.010000e-16 97.1
51 TraesCS2D01G072900 chr6B 85.115 786 76 29 3288 4044 516544778 516545551 0.000000e+00 765.0
52 TraesCS2D01G072900 chr6B 83.133 249 32 5 1 246 117738288 117738047 1.020000e-52 219.0
53 TraesCS2D01G072900 chr6B 87.500 88 4 7 292 372 562588773 562588860 1.800000e-15 95.3
54 TraesCS2D01G072900 chr7B 84.566 784 86 18 3286 4044 131086900 131087673 0.000000e+00 745.0
55 TraesCS2D01G072900 chr5B 84.566 784 85 25 3286 4044 544539760 544538988 0.000000e+00 745.0
56 TraesCS2D01G072900 chr5B 84.411 789 82 24 3288 4044 123429819 123429040 0.000000e+00 737.0
57 TraesCS2D01G072900 chr5B 84.157 789 84 25 3288 4044 123212501 123211722 0.000000e+00 726.0
58 TraesCS2D01G072900 chr5B 89.696 427 20 13 439 843 2096075 2096499 1.940000e-144 523.0
59 TraesCS2D01G072900 chr1A 87.007 608 51 10 3288 3892 94126094 94126676 0.000000e+00 660.0
60 TraesCS2D01G072900 chr1A 85.549 173 22 3 3878 4049 94126744 94126914 1.740000e-40 178.0
61 TraesCS2D01G072900 chr6D 95.187 374 14 1 2 371 29220579 29220952 6.780000e-164 588.0
62 TraesCS2D01G072900 chr6D 97.170 318 9 0 1 318 446526895 446527212 6.920000e-149 538.0
63 TraesCS2D01G072900 chr1D 88.132 514 25 12 364 843 225248764 225249275 4.080000e-161 579.0
64 TraesCS2D01G072900 chr1D 97.170 318 9 0 1 318 470639912 470640229 6.920000e-149 538.0
65 TraesCS2D01G072900 chr1D 96.774 62 2 0 318 379 493817273 493817334 2.990000e-18 104.0
66 TraesCS2D01G072900 chr3D 88.119 505 23 11 364 843 368085407 368084915 3.180000e-157 566.0
67 TraesCS2D01G072900 chr3D 97.799 318 7 0 1 318 17614586 17614903 3.200000e-152 549.0
68 TraesCS2D01G072900 chr7D 87.354 514 20 14 364 843 398471247 398471749 1.150000e-151 547.0
69 TraesCS2D01G072900 chr7D 97.170 318 9 0 1 318 628761481 628761164 6.920000e-149 538.0
70 TraesCS2D01G072900 chr7D 86.187 514 25 18 364 843 429205684 429206185 1.170000e-141 514.0
71 TraesCS2D01G072900 chr7D 85.409 514 29 19 364 843 429222560 429223061 5.470000e-135 492.0
72 TraesCS2D01G072900 chr7D 93.939 66 2 2 318 381 102046013 102046078 1.390000e-16 99.0
73 TraesCS2D01G072900 chr3B 86.822 516 29 10 364 843 389843568 389843056 1.920000e-149 540.0
74 TraesCS2D01G072900 chr3B 85.714 168 22 2 3878 4044 35054626 35054460 6.250000e-40 176.0
75 TraesCS2D01G072900 chrUn 96.855 318 10 0 1 318 96039662 96039345 3.220000e-147 532.0
76 TraesCS2D01G072900 chrUn 85.153 229 12 3 364 574 314206676 314206900 1.320000e-51 215.0
77 TraesCS2D01G072900 chrUn 95.312 64 1 2 318 380 283570872 283570810 3.870000e-17 100.0
78 TraesCS2D01G072900 chr5D 94.752 343 14 2 1 339 482695367 482695025 1.160000e-146 531.0
79 TraesCS2D01G072900 chr5D 94.752 343 14 2 1 339 499079308 499079650 1.160000e-146 531.0
80 TraesCS2D01G072900 chr4D 86.837 509 22 21 369 843 250226155 250226652 1.500000e-145 527.0
81 TraesCS2D01G072900 chr4D 85.965 513 26 15 364 843 197176627 197176128 1.950000e-139 507.0
82 TraesCS2D01G072900 chr6A 85.659 516 36 5 364 843 320145503 320144990 5.430000e-140 508.0
83 TraesCS2D01G072900 chr4B 83.246 191 26 6 2038 2227 658574251 658574436 2.910000e-38 171.0
84 TraesCS2D01G072900 chr3A 92.000 75 2 4 318 388 743015308 743015382 1.080000e-17 102.0
85 TraesCS2D01G072900 chr1B 89.157 83 5 4 292 370 28340753 28340671 3.870000e-17 100.0
86 TraesCS2D01G072900 chr1B 80.142 141 16 11 265 396 599318411 599318274 1.800000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G072900 chr2D 30546333 30552401 6068 False 11208.000000 11208 100.000000 1 6069 1 chr2D.!!$F2 6068
1 TraesCS2D01G072900 chr2D 325996448 325996957 509 False 616.000000 616 89.453000 364 843 1 chr2D.!!$F4 479
2 TraesCS2D01G072900 chr2D 543734707 543735214 507 True 562.000000 562 87.719000 364 841 1 chr2D.!!$R1 477
3 TraesCS2D01G072900 chr2D 22428527 22432727 4200 True 529.233333 1212 87.183333 1602 5087 6 chr2D.!!$R4 3485
4 TraesCS2D01G072900 chr2D 22464974 22469518 4544 False 470.200000 1242 86.441286 1602 5387 7 chr2D.!!$F6 3785
5 TraesCS2D01G072900 chr2B 50286824 50292191 5367 False 1413.600000 3332 92.109800 867 5727 5 chr2B.!!$F3 4860
6 TraesCS2D01G072900 chr2B 39368025 39372217 4192 False 578.080000 1096 88.158800 1602 5087 5 chr2B.!!$F2 3485
7 TraesCS2D01G072900 chr2B 39205971 39206543 572 True 257.000000 257 76.144000 865 1445 1 chr2B.!!$R1 580
8 TraesCS2D01G072900 chr2A 32527854 32534142 6288 False 1297.166667 2599 93.678500 872 6069 6 chr2A.!!$F5 5197
9 TraesCS2D01G072900 chr2A 24160406 24165721 5315 True 529.500000 1170 84.196500 969 5071 6 chr2A.!!$R2 4102
10 TraesCS2D01G072900 chr6B 516544778 516545551 773 False 765.000000 765 85.115000 3288 4044 1 chr6B.!!$F1 756
11 TraesCS2D01G072900 chr7B 131086900 131087673 773 False 745.000000 745 84.566000 3286 4044 1 chr7B.!!$F1 758
12 TraesCS2D01G072900 chr5B 544538988 544539760 772 True 745.000000 745 84.566000 3286 4044 1 chr5B.!!$R3 758
13 TraesCS2D01G072900 chr5B 123429040 123429819 779 True 737.000000 737 84.411000 3288 4044 1 chr5B.!!$R2 756
14 TraesCS2D01G072900 chr5B 123211722 123212501 779 True 726.000000 726 84.157000 3288 4044 1 chr5B.!!$R1 756
15 TraesCS2D01G072900 chr1A 94126094 94126914 820 False 419.000000 660 86.278000 3288 4049 2 chr1A.!!$F1 761
16 TraesCS2D01G072900 chr1D 225248764 225249275 511 False 579.000000 579 88.132000 364 843 1 chr1D.!!$F1 479
17 TraesCS2D01G072900 chr7D 398471247 398471749 502 False 547.000000 547 87.354000 364 843 1 chr7D.!!$F2 479
18 TraesCS2D01G072900 chr7D 429205684 429206185 501 False 514.000000 514 86.187000 364 843 1 chr7D.!!$F3 479
19 TraesCS2D01G072900 chr7D 429222560 429223061 501 False 492.000000 492 85.409000 364 843 1 chr7D.!!$F4 479
20 TraesCS2D01G072900 chr3B 389843056 389843568 512 True 540.000000 540 86.822000 364 843 1 chr3B.!!$R2 479
21 TraesCS2D01G072900 chr6A 320144990 320145503 513 True 508.000000 508 85.659000 364 843 1 chr6A.!!$R1 479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.028770 CTAGTGCCTCTCTCTTCGCG 59.971 60.000 0.00 0.0 0.00 5.87 F
298 299 0.034896 AAGATTGCTCACGAACCGGT 59.965 50.000 0.00 0.0 0.00 5.28 F
1216 1301 0.108585 TTTCTTGCGTCCTCCTTGCT 59.891 50.000 0.00 0.0 0.00 3.91 F
1273 1368 0.179129 TTTCGCCGGTATCTCGTTCC 60.179 55.000 1.90 0.0 0.00 3.62 F
1277 1372 0.594284 GCCGGTATCTCGTTCCTTCG 60.594 60.000 1.90 0.0 0.00 3.79 F
2908 3873 0.715551 GCTTACAATTTGCGCCTTGC 59.284 50.000 4.18 0.0 46.70 4.01 F
3081 4048 3.164268 TCAAGGTAAGTTTGCATGGCAT 58.836 40.909 0.00 0.0 38.76 4.40 F
4996 7477 0.609957 TTGGAAGTGGCAGCCTGATG 60.610 55.000 14.15 0.0 0.00 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1205 1290 0.248843 CAGGAGACAGCAAGGAGGAC 59.751 60.000 0.00 0.00 0.00 3.85 R
2252 2929 1.301874 CCGCCGGAAAACACCACTA 60.302 57.895 5.05 0.00 0.00 2.74 R
2986 3952 1.745653 GGTTCCTGCCATAGAACAAGC 59.254 52.381 9.24 0.00 43.37 4.01 R
3081 4048 9.905713 ACTTAAATAATGAGAATGCTCCTGTAA 57.094 29.630 0.00 0.00 40.55 2.41 R
3274 4242 5.053145 AGAGTCATATCAAACTTCGATGCC 58.947 41.667 0.00 0.00 0.00 4.40 R
3941 5688 0.521735 CTTTCCTGTTTAGTGGGCGC 59.478 55.000 0.00 0.00 0.00 6.53 R
5032 7513 0.108186 TATCGCAGTTGTCAGGCCTG 60.108 55.000 27.87 27.87 0.00 4.85 R
6021 8970 1.436336 CGGTCCGATACAGGTCCAC 59.564 63.158 4.91 0.00 39.06 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.919653 CACATAGCTCCGTGCAGT 57.080 55.556 0.00 0.00 45.94 4.40
20 21 2.670635 CACATAGCTCCGTGCAGTC 58.329 57.895 0.00 0.00 45.94 3.51
21 22 0.174389 CACATAGCTCCGTGCAGTCT 59.826 55.000 0.00 0.00 45.94 3.24
22 23 1.405463 CACATAGCTCCGTGCAGTCTA 59.595 52.381 0.00 0.00 45.94 2.59
23 24 1.405821 ACATAGCTCCGTGCAGTCTAC 59.594 52.381 0.00 0.00 45.94 2.59
24 25 1.405463 CATAGCTCCGTGCAGTCTACA 59.595 52.381 0.00 0.00 45.94 2.74
25 26 0.809385 TAGCTCCGTGCAGTCTACAC 59.191 55.000 0.00 0.00 45.94 2.90
26 27 0.896019 AGCTCCGTGCAGTCTACACT 60.896 55.000 1.77 0.00 45.94 3.55
27 28 0.809385 GCTCCGTGCAGTCTACACTA 59.191 55.000 1.77 0.00 42.31 2.74
28 29 1.405821 GCTCCGTGCAGTCTACACTAT 59.594 52.381 1.77 0.00 42.31 2.12
29 30 2.159226 GCTCCGTGCAGTCTACACTATT 60.159 50.000 1.77 0.00 42.31 1.73
30 31 3.696898 CTCCGTGCAGTCTACACTATTC 58.303 50.000 1.77 0.00 35.84 1.75
31 32 2.426024 TCCGTGCAGTCTACACTATTCC 59.574 50.000 1.77 0.00 35.84 3.01
32 33 2.427453 CCGTGCAGTCTACACTATTCCT 59.573 50.000 1.77 0.00 35.84 3.36
33 34 3.489398 CCGTGCAGTCTACACTATTCCTC 60.489 52.174 1.77 0.00 35.84 3.71
34 35 3.128764 CGTGCAGTCTACACTATTCCTCA 59.871 47.826 1.77 0.00 35.84 3.86
35 36 4.380550 CGTGCAGTCTACACTATTCCTCAA 60.381 45.833 1.77 0.00 35.84 3.02
36 37 5.105752 GTGCAGTCTACACTATTCCTCAAG 58.894 45.833 0.00 0.00 35.12 3.02
37 38 4.160439 TGCAGTCTACACTATTCCTCAAGG 59.840 45.833 0.00 0.00 0.00 3.61
38 39 4.688021 CAGTCTACACTATTCCTCAAGGC 58.312 47.826 0.00 0.00 34.44 4.35
39 40 4.404073 CAGTCTACACTATTCCTCAAGGCT 59.596 45.833 0.00 0.00 34.44 4.58
40 41 5.026790 AGTCTACACTATTCCTCAAGGCTT 58.973 41.667 0.00 0.00 34.44 4.35
41 42 6.096987 CAGTCTACACTATTCCTCAAGGCTTA 59.903 42.308 0.00 0.00 34.44 3.09
42 43 6.668283 AGTCTACACTATTCCTCAAGGCTTAA 59.332 38.462 0.00 0.00 34.44 1.85
43 44 7.180408 AGTCTACACTATTCCTCAAGGCTTAAA 59.820 37.037 0.00 0.00 34.44 1.52
44 45 7.492994 GTCTACACTATTCCTCAAGGCTTAAAG 59.507 40.741 0.00 0.24 34.44 1.85
45 46 4.944317 ACACTATTCCTCAAGGCTTAAAGC 59.056 41.667 0.00 0.00 41.46 3.51
46 47 5.189180 CACTATTCCTCAAGGCTTAAAGCT 58.811 41.667 0.00 0.00 41.99 3.74
47 48 6.070194 ACACTATTCCTCAAGGCTTAAAGCTA 60.070 38.462 0.00 0.00 41.99 3.32
48 49 6.823689 CACTATTCCTCAAGGCTTAAAGCTAA 59.176 38.462 0.00 0.00 41.99 3.09
49 50 7.011857 CACTATTCCTCAAGGCTTAAAGCTAAG 59.988 40.741 0.00 0.00 41.99 2.18
66 67 3.256936 GCAACGTGCAGATGAGCA 58.743 55.556 0.00 0.00 44.26 4.26
72 73 2.795973 TGCAGATGAGCATTGCGC 59.204 55.556 0.00 0.00 40.11 6.09
73 74 2.025727 GCAGATGAGCATTGCGCC 59.974 61.111 4.18 3.73 44.04 6.53
74 75 2.478890 GCAGATGAGCATTGCGCCT 61.479 57.895 4.18 0.00 44.04 5.52
75 76 1.647629 CAGATGAGCATTGCGCCTC 59.352 57.895 4.18 9.49 44.04 4.70
76 77 0.814410 CAGATGAGCATTGCGCCTCT 60.814 55.000 12.94 12.94 44.04 3.69
77 78 0.532417 AGATGAGCATTGCGCCTCTC 60.532 55.000 12.94 6.65 44.04 3.20
78 79 1.505477 GATGAGCATTGCGCCTCTCC 61.505 60.000 4.18 0.00 44.04 3.71
79 80 1.980784 ATGAGCATTGCGCCTCTCCT 61.981 55.000 4.18 0.00 44.04 3.69
80 81 1.451028 GAGCATTGCGCCTCTCCTT 60.451 57.895 4.18 0.00 44.04 3.36
81 82 1.435408 GAGCATTGCGCCTCTCCTTC 61.435 60.000 4.18 0.00 44.04 3.46
82 83 1.746615 GCATTGCGCCTCTCCTTCA 60.747 57.895 4.18 0.00 32.94 3.02
83 84 1.099879 GCATTGCGCCTCTCCTTCAT 61.100 55.000 4.18 0.00 32.94 2.57
84 85 0.942962 CATTGCGCCTCTCCTTCATC 59.057 55.000 4.18 0.00 0.00 2.92
85 86 0.531532 ATTGCGCCTCTCCTTCATCG 60.532 55.000 4.18 0.00 0.00 3.84
86 87 1.888436 TTGCGCCTCTCCTTCATCGT 61.888 55.000 4.18 0.00 0.00 3.73
87 88 1.590259 GCGCCTCTCCTTCATCGTC 60.590 63.158 0.00 0.00 0.00 4.20
88 89 2.010582 GCGCCTCTCCTTCATCGTCT 62.011 60.000 0.00 0.00 0.00 4.18
89 90 0.030101 CGCCTCTCCTTCATCGTCTC 59.970 60.000 0.00 0.00 0.00 3.36
90 91 1.398692 GCCTCTCCTTCATCGTCTCT 58.601 55.000 0.00 0.00 0.00 3.10
91 92 1.066908 GCCTCTCCTTCATCGTCTCTG 59.933 57.143 0.00 0.00 0.00 3.35
92 93 1.066908 CCTCTCCTTCATCGTCTCTGC 59.933 57.143 0.00 0.00 0.00 4.26
93 94 1.747924 CTCTCCTTCATCGTCTCTGCA 59.252 52.381 0.00 0.00 0.00 4.41
94 95 1.474478 TCTCCTTCATCGTCTCTGCAC 59.526 52.381 0.00 0.00 0.00 4.57
95 96 1.476085 CTCCTTCATCGTCTCTGCACT 59.524 52.381 0.00 0.00 0.00 4.40
96 97 1.474478 TCCTTCATCGTCTCTGCACTC 59.526 52.381 0.00 0.00 0.00 3.51
97 98 1.203287 CCTTCATCGTCTCTGCACTCA 59.797 52.381 0.00 0.00 0.00 3.41
98 99 2.528125 CTTCATCGTCTCTGCACTCAG 58.472 52.381 0.00 0.00 41.67 3.35
99 100 0.813821 TCATCGTCTCTGCACTCAGG 59.186 55.000 0.00 0.00 40.69 3.86
100 101 0.179116 CATCGTCTCTGCACTCAGGG 60.179 60.000 0.00 0.00 42.26 4.45
101 102 1.954362 ATCGTCTCTGCACTCAGGGC 61.954 60.000 0.00 0.00 40.66 5.19
102 103 2.644212 CGTCTCTGCACTCAGGGCT 61.644 63.158 0.00 0.00 40.66 5.19
103 104 1.676384 GTCTCTGCACTCAGGGCTT 59.324 57.895 0.00 0.00 40.66 4.35
104 105 0.898320 GTCTCTGCACTCAGGGCTTA 59.102 55.000 0.00 0.00 40.66 3.09
105 106 1.484240 GTCTCTGCACTCAGGGCTTAT 59.516 52.381 0.00 0.00 40.66 1.73
106 107 2.695666 GTCTCTGCACTCAGGGCTTATA 59.304 50.000 0.00 0.00 40.66 0.98
107 108 3.133003 GTCTCTGCACTCAGGGCTTATAA 59.867 47.826 0.00 0.00 40.66 0.98
108 109 3.774766 TCTCTGCACTCAGGGCTTATAAA 59.225 43.478 0.00 0.00 40.66 1.40
109 110 3.873910 TCTGCACTCAGGGCTTATAAAC 58.126 45.455 0.00 0.00 40.69 2.01
110 111 2.945668 CTGCACTCAGGGCTTATAAACC 59.054 50.000 0.00 0.00 36.68 3.27
111 112 1.940613 GCACTCAGGGCTTATAAACCG 59.059 52.381 0.00 0.00 0.00 4.44
112 113 1.940613 CACTCAGGGCTTATAAACCGC 59.059 52.381 0.00 0.00 0.00 5.68
113 114 1.838077 ACTCAGGGCTTATAAACCGCT 59.162 47.619 0.00 0.00 0.00 5.52
114 115 2.158943 ACTCAGGGCTTATAAACCGCTC 60.159 50.000 0.00 0.00 0.00 5.03
115 116 1.140252 TCAGGGCTTATAAACCGCTCC 59.860 52.381 0.00 0.00 0.00 4.70
116 117 1.141053 CAGGGCTTATAAACCGCTCCT 59.859 52.381 0.00 0.55 0.00 3.69
117 118 2.367567 CAGGGCTTATAAACCGCTCCTA 59.632 50.000 0.00 0.00 0.00 2.94
118 119 2.633481 AGGGCTTATAAACCGCTCCTAG 59.367 50.000 0.00 0.00 0.00 3.02
119 120 2.367894 GGGCTTATAAACCGCTCCTAGT 59.632 50.000 0.00 0.00 0.00 2.57
120 121 3.391049 GGCTTATAAACCGCTCCTAGTG 58.609 50.000 0.00 0.00 0.00 2.74
121 122 2.801111 GCTTATAAACCGCTCCTAGTGC 59.199 50.000 0.00 0.00 0.00 4.40
122 123 3.391049 CTTATAAACCGCTCCTAGTGCC 58.609 50.000 0.00 0.00 0.00 5.01
123 124 1.497161 ATAAACCGCTCCTAGTGCCT 58.503 50.000 0.00 0.00 0.00 4.75
124 125 0.822164 TAAACCGCTCCTAGTGCCTC 59.178 55.000 0.00 0.00 0.00 4.70
125 126 0.905337 AAACCGCTCCTAGTGCCTCT 60.905 55.000 0.00 0.00 0.00 3.69
126 127 1.324005 AACCGCTCCTAGTGCCTCTC 61.324 60.000 0.00 0.00 0.00 3.20
127 128 1.454847 CCGCTCCTAGTGCCTCTCT 60.455 63.158 0.00 0.00 0.00 3.10
128 129 1.452145 CCGCTCCTAGTGCCTCTCTC 61.452 65.000 0.00 0.00 0.00 3.20
129 130 0.465460 CGCTCCTAGTGCCTCTCTCT 60.465 60.000 0.00 0.00 0.00 3.10
130 131 1.775385 GCTCCTAGTGCCTCTCTCTT 58.225 55.000 0.00 0.00 0.00 2.85
131 132 1.681264 GCTCCTAGTGCCTCTCTCTTC 59.319 57.143 0.00 0.00 0.00 2.87
132 133 1.946768 CTCCTAGTGCCTCTCTCTTCG 59.053 57.143 0.00 0.00 0.00 3.79
133 134 0.383949 CCTAGTGCCTCTCTCTTCGC 59.616 60.000 0.00 0.00 0.00 4.70
134 135 0.028770 CTAGTGCCTCTCTCTTCGCG 59.971 60.000 0.00 0.00 0.00 5.87
135 136 0.392595 TAGTGCCTCTCTCTTCGCGA 60.393 55.000 3.71 3.71 0.00 5.87
136 137 1.226547 GTGCCTCTCTCTTCGCGAG 60.227 63.158 9.59 3.89 41.30 5.03
137 138 2.410687 TGCCTCTCTCTTCGCGAGG 61.411 63.158 12.67 12.67 45.59 4.63
138 139 2.411504 GCCTCTCTCTTCGCGAGGT 61.412 63.158 18.33 0.00 44.83 3.85
139 140 1.431440 CCTCTCTCTTCGCGAGGTG 59.569 63.158 18.33 15.74 39.54 4.00
140 141 1.431440 CTCTCTCTTCGCGAGGTGG 59.569 63.158 18.33 12.07 40.30 4.61
141 142 1.999071 CTCTCTCTTCGCGAGGTGGG 61.999 65.000 18.33 15.75 40.30 4.61
142 143 2.035155 TCTCTTCGCGAGGTGGGA 59.965 61.111 18.33 10.89 40.30 4.37
143 144 2.182030 CTCTTCGCGAGGTGGGAC 59.818 66.667 18.33 0.00 39.57 4.46
144 145 2.282958 TCTTCGCGAGGTGGGACT 60.283 61.111 18.33 0.00 39.57 3.85
145 146 1.001764 TCTTCGCGAGGTGGGACTA 60.002 57.895 18.33 0.00 39.57 2.59
146 147 0.609957 TCTTCGCGAGGTGGGACTAA 60.610 55.000 18.33 0.00 39.57 2.24
147 148 0.245539 CTTCGCGAGGTGGGACTAAA 59.754 55.000 9.59 0.00 39.57 1.85
148 149 0.680618 TTCGCGAGGTGGGACTAAAA 59.319 50.000 9.59 0.00 39.57 1.52
149 150 0.680618 TCGCGAGGTGGGACTAAAAA 59.319 50.000 3.71 0.00 34.10 1.94
176 177 8.619546 ACAGCTTACTAAGAAACTATAGTACCG 58.380 37.037 5.65 0.00 35.06 4.02
177 178 8.074972 CAGCTTACTAAGAAACTATAGTACCGG 58.925 40.741 5.65 0.00 35.06 5.28
178 179 7.777440 AGCTTACTAAGAAACTATAGTACCGGT 59.223 37.037 13.98 13.98 35.06 5.28
179 180 8.409371 GCTTACTAAGAAACTATAGTACCGGTT 58.591 37.037 15.04 0.00 35.06 4.44
180 181 9.943163 CTTACTAAGAAACTATAGTACCGGTTC 57.057 37.037 15.04 8.12 35.06 3.62
181 182 7.944729 ACTAAGAAACTATAGTACCGGTTCA 57.055 36.000 15.04 0.00 30.78 3.18
182 183 8.530804 ACTAAGAAACTATAGTACCGGTTCAT 57.469 34.615 15.04 6.45 30.78 2.57
183 184 8.411683 ACTAAGAAACTATAGTACCGGTTCATG 58.588 37.037 15.04 1.08 30.78 3.07
184 185 6.158023 AGAAACTATAGTACCGGTTCATGG 57.842 41.667 15.04 8.48 0.00 3.66
185 186 4.332428 AACTATAGTACCGGTTCATGGC 57.668 45.455 15.04 0.00 0.00 4.40
186 187 3.302161 ACTATAGTACCGGTTCATGGCA 58.698 45.455 15.04 0.00 0.00 4.92
187 188 2.614829 ATAGTACCGGTTCATGGCAC 57.385 50.000 15.04 1.99 0.00 5.01
188 189 0.173935 TAGTACCGGTTCATGGCACG 59.826 55.000 15.04 0.00 0.00 5.34
189 190 1.079681 GTACCGGTTCATGGCACGA 60.080 57.895 15.04 0.00 0.00 4.35
190 191 0.671163 GTACCGGTTCATGGCACGAA 60.671 55.000 15.04 0.00 0.00 3.85
191 192 0.671163 TACCGGTTCATGGCACGAAC 60.671 55.000 17.48 17.48 41.66 3.95
194 195 2.867472 GTTCATGGCACGAACCGG 59.133 61.111 15.10 0.00 37.40 5.28
195 196 1.964373 GTTCATGGCACGAACCGGT 60.964 57.895 15.10 0.00 37.40 5.28
196 197 0.671163 GTTCATGGCACGAACCGGTA 60.671 55.000 15.10 0.00 37.40 4.02
197 198 0.390603 TTCATGGCACGAACCGGTAG 60.391 55.000 8.00 8.18 0.00 3.18
198 199 1.079405 CATGGCACGAACCGGTAGT 60.079 57.895 8.00 8.96 0.00 2.73
199 200 0.173935 CATGGCACGAACCGGTAGTA 59.826 55.000 8.00 0.00 0.00 1.82
200 201 0.896923 ATGGCACGAACCGGTAGTAA 59.103 50.000 8.00 1.25 0.00 2.24
201 202 0.678395 TGGCACGAACCGGTAGTAAA 59.322 50.000 8.00 0.00 0.00 2.01
202 203 1.337074 TGGCACGAACCGGTAGTAAAG 60.337 52.381 8.00 0.93 0.00 1.85
203 204 1.353076 GCACGAACCGGTAGTAAAGG 58.647 55.000 8.00 0.55 0.00 3.11
204 205 1.337167 GCACGAACCGGTAGTAAAGGT 60.337 52.381 8.00 0.00 40.50 3.50
205 206 2.331194 CACGAACCGGTAGTAAAGGTG 58.669 52.381 8.00 4.87 38.44 4.00
206 207 1.337167 ACGAACCGGTAGTAAAGGTGC 60.337 52.381 8.00 0.00 38.44 5.01
207 208 1.730501 GAACCGGTAGTAAAGGTGCC 58.269 55.000 8.00 0.00 38.44 5.01
208 209 0.325933 AACCGGTAGTAAAGGTGCCC 59.674 55.000 8.00 0.00 38.44 5.36
209 210 1.153509 CCGGTAGTAAAGGTGCCCG 60.154 63.158 0.00 0.00 35.32 6.13
210 211 1.593265 CGGTAGTAAAGGTGCCCGT 59.407 57.895 0.00 0.00 0.00 5.28
211 212 0.738412 CGGTAGTAAAGGTGCCCGTG 60.738 60.000 0.00 0.00 0.00 4.94
212 213 0.609662 GGTAGTAAAGGTGCCCGTGA 59.390 55.000 0.00 0.00 0.00 4.35
213 214 1.405121 GGTAGTAAAGGTGCCCGTGAG 60.405 57.143 0.00 0.00 0.00 3.51
225 226 3.636231 CGTGAGGCCCCAACCTGA 61.636 66.667 0.00 0.00 41.32 3.86
226 227 2.034221 GTGAGGCCCCAACCTGAC 59.966 66.667 0.00 0.00 41.32 3.51
227 228 3.256960 TGAGGCCCCAACCTGACC 61.257 66.667 0.00 0.00 41.32 4.02
228 229 3.256960 GAGGCCCCAACCTGACCA 61.257 66.667 0.00 0.00 41.32 4.02
229 230 3.569200 GAGGCCCCAACCTGACCAC 62.569 68.421 0.00 0.00 41.32 4.16
230 231 3.897122 GGCCCCAACCTGACCACA 61.897 66.667 0.00 0.00 0.00 4.17
231 232 2.282462 GCCCCAACCTGACCACAG 60.282 66.667 0.00 0.00 43.12 3.66
232 233 2.282462 CCCCAACCTGACCACAGC 60.282 66.667 0.00 0.00 42.25 4.40
233 234 2.282462 CCCAACCTGACCACAGCC 60.282 66.667 0.00 0.00 42.25 4.85
234 235 2.833913 CCCAACCTGACCACAGCCT 61.834 63.158 0.00 0.00 42.25 4.58
235 236 1.601759 CCAACCTGACCACAGCCTG 60.602 63.158 0.00 0.00 42.25 4.85
236 237 1.451504 CAACCTGACCACAGCCTGA 59.548 57.895 0.00 0.00 42.25 3.86
237 238 0.886490 CAACCTGACCACAGCCTGAC 60.886 60.000 0.00 0.00 42.25 3.51
238 239 2.047844 CCTGACCACAGCCTGACG 60.048 66.667 0.00 0.00 42.25 4.35
239 240 2.740055 CTGACCACAGCCTGACGC 60.740 66.667 0.00 0.00 37.33 5.19
240 241 3.519973 CTGACCACAGCCTGACGCA 62.520 63.158 0.00 0.00 41.38 5.24
241 242 2.740055 GACCACAGCCTGACGCAG 60.740 66.667 0.00 0.52 41.38 5.18
242 243 4.996434 ACCACAGCCTGACGCAGC 62.996 66.667 0.00 0.00 41.38 5.25
244 245 4.694233 CACAGCCTGACGCAGCCT 62.694 66.667 0.00 0.00 41.38 4.58
245 246 4.385405 ACAGCCTGACGCAGCCTC 62.385 66.667 0.00 0.00 41.38 4.70
246 247 4.383861 CAGCCTGACGCAGCCTCA 62.384 66.667 0.00 0.00 41.38 3.86
247 248 3.397439 AGCCTGACGCAGCCTCAT 61.397 61.111 0.00 0.00 41.38 2.90
248 249 2.437359 GCCTGACGCAGCCTCATT 60.437 61.111 0.00 0.00 37.47 2.57
249 250 1.153369 GCCTGACGCAGCCTCATTA 60.153 57.895 0.00 0.00 37.47 1.90
250 251 0.744414 GCCTGACGCAGCCTCATTAA 60.744 55.000 0.00 0.00 37.47 1.40
251 252 1.959042 CCTGACGCAGCCTCATTAAT 58.041 50.000 0.00 0.00 0.00 1.40
252 253 2.806745 GCCTGACGCAGCCTCATTAATA 60.807 50.000 0.00 0.00 37.47 0.98
253 254 2.802816 CCTGACGCAGCCTCATTAATAC 59.197 50.000 0.00 0.00 0.00 1.89
254 255 2.802816 CTGACGCAGCCTCATTAATACC 59.197 50.000 0.00 0.00 0.00 2.73
255 256 1.792949 GACGCAGCCTCATTAATACCG 59.207 52.381 0.00 0.00 0.00 4.02
256 257 1.148310 CGCAGCCTCATTAATACCGG 58.852 55.000 0.00 0.00 0.00 5.28
257 258 1.540363 CGCAGCCTCATTAATACCGGT 60.540 52.381 13.98 13.98 0.00 5.28
258 259 2.572290 GCAGCCTCATTAATACCGGTT 58.428 47.619 15.04 0.00 0.00 4.44
259 260 2.548480 GCAGCCTCATTAATACCGGTTC 59.452 50.000 15.04 0.00 0.00 3.62
260 261 2.800544 CAGCCTCATTAATACCGGTTCG 59.199 50.000 15.04 0.00 0.00 3.95
261 262 2.433239 AGCCTCATTAATACCGGTTCGT 59.567 45.455 15.04 0.01 0.00 3.85
262 263 2.542595 GCCTCATTAATACCGGTTCGTG 59.457 50.000 15.04 5.58 0.00 4.35
263 264 3.738899 GCCTCATTAATACCGGTTCGTGA 60.739 47.826 15.04 9.87 0.00 4.35
264 265 3.800506 CCTCATTAATACCGGTTCGTGAC 59.199 47.826 15.04 0.00 0.00 3.67
265 266 4.426416 CTCATTAATACCGGTTCGTGACA 58.574 43.478 15.04 0.00 0.00 3.58
266 267 4.175516 TCATTAATACCGGTTCGTGACAC 58.824 43.478 15.04 0.00 0.00 3.67
267 268 2.261037 TAATACCGGTTCGTGACACG 57.739 50.000 21.88 21.88 44.19 4.49
276 277 3.832981 CGTGACACGAACCGGTAC 58.167 61.111 23.39 0.00 46.05 3.34
277 278 1.283793 CGTGACACGAACCGGTACT 59.716 57.895 23.39 0.00 46.05 2.73
278 279 1.000233 CGTGACACGAACCGGTACTG 61.000 60.000 23.39 5.98 46.05 2.74
279 280 0.311790 GTGACACGAACCGGTACTGA 59.688 55.000 8.00 0.00 0.00 3.41
280 281 1.031235 TGACACGAACCGGTACTGAA 58.969 50.000 8.00 0.00 0.00 3.02
281 282 1.001048 TGACACGAACCGGTACTGAAG 60.001 52.381 8.00 0.00 0.00 3.02
282 283 1.267806 GACACGAACCGGTACTGAAGA 59.732 52.381 8.00 0.00 0.00 2.87
283 284 1.891150 ACACGAACCGGTACTGAAGAT 59.109 47.619 8.00 0.00 0.00 2.40
284 285 2.298163 ACACGAACCGGTACTGAAGATT 59.702 45.455 8.00 0.00 0.00 2.40
285 286 2.666508 CACGAACCGGTACTGAAGATTG 59.333 50.000 8.00 0.00 0.00 2.67
286 287 1.659098 CGAACCGGTACTGAAGATTGC 59.341 52.381 8.00 0.00 0.00 3.56
287 288 2.674177 CGAACCGGTACTGAAGATTGCT 60.674 50.000 8.00 0.00 0.00 3.91
288 289 2.674796 ACCGGTACTGAAGATTGCTC 57.325 50.000 4.49 0.00 0.00 4.26
289 290 1.899814 ACCGGTACTGAAGATTGCTCA 59.100 47.619 4.49 0.00 0.00 4.26
290 291 2.271800 CCGGTACTGAAGATTGCTCAC 58.728 52.381 2.31 0.00 0.00 3.51
291 292 1.920574 CGGTACTGAAGATTGCTCACG 59.079 52.381 0.00 0.00 0.00 4.35
292 293 2.415491 CGGTACTGAAGATTGCTCACGA 60.415 50.000 0.00 0.00 0.00 4.35
293 294 3.585862 GGTACTGAAGATTGCTCACGAA 58.414 45.455 0.00 0.00 0.00 3.85
294 295 3.368236 GGTACTGAAGATTGCTCACGAAC 59.632 47.826 0.00 0.00 0.00 3.95
295 296 2.417719 ACTGAAGATTGCTCACGAACC 58.582 47.619 0.00 0.00 0.00 3.62
296 297 1.391485 CTGAAGATTGCTCACGAACCG 59.609 52.381 0.00 0.00 0.00 4.44
297 298 0.721718 GAAGATTGCTCACGAACCGG 59.278 55.000 0.00 0.00 0.00 5.28
298 299 0.034896 AAGATTGCTCACGAACCGGT 59.965 50.000 0.00 0.00 0.00 5.28
299 300 0.892755 AGATTGCTCACGAACCGGTA 59.107 50.000 8.00 0.00 0.00 4.02
300 301 0.997196 GATTGCTCACGAACCGGTAC 59.003 55.000 8.00 0.00 0.00 3.34
301 302 0.606604 ATTGCTCACGAACCGGTACT 59.393 50.000 8.00 0.00 0.00 2.73
302 303 1.246649 TTGCTCACGAACCGGTACTA 58.753 50.000 8.00 0.00 0.00 1.82
303 304 1.246649 TGCTCACGAACCGGTACTAA 58.753 50.000 8.00 0.00 0.00 2.24
304 305 1.820519 TGCTCACGAACCGGTACTAAT 59.179 47.619 8.00 0.00 0.00 1.73
305 306 2.190981 GCTCACGAACCGGTACTAATG 58.809 52.381 8.00 2.41 0.00 1.90
306 307 2.159338 GCTCACGAACCGGTACTAATGA 60.159 50.000 8.00 7.15 0.00 2.57
307 308 3.490419 GCTCACGAACCGGTACTAATGAT 60.490 47.826 8.00 0.00 0.00 2.45
308 309 4.288531 CTCACGAACCGGTACTAATGATC 58.711 47.826 8.00 0.00 0.00 2.92
309 310 3.949754 TCACGAACCGGTACTAATGATCT 59.050 43.478 8.00 0.00 0.00 2.75
310 311 4.036027 TCACGAACCGGTACTAATGATCTC 59.964 45.833 8.00 0.00 0.00 2.75
311 312 3.317430 ACGAACCGGTACTAATGATCTCC 59.683 47.826 8.00 0.00 0.00 3.71
312 313 3.608707 CGAACCGGTACTAATGATCTCCG 60.609 52.174 8.00 0.00 38.05 4.63
313 314 2.941480 ACCGGTACTAATGATCTCCGT 58.059 47.619 4.49 0.00 36.84 4.69
314 315 2.883386 ACCGGTACTAATGATCTCCGTC 59.117 50.000 4.49 0.00 36.84 4.79
315 316 2.228343 CCGGTACTAATGATCTCCGTCC 59.772 54.545 0.00 0.00 36.84 4.79
316 317 2.095869 CGGTACTAATGATCTCCGTCCG 60.096 54.545 0.00 0.00 34.38 4.79
317 318 2.351544 GGTACTAATGATCTCCGTCCGC 60.352 54.545 0.00 0.00 0.00 5.54
318 319 1.399714 ACTAATGATCTCCGTCCGCA 58.600 50.000 0.00 0.00 0.00 5.69
319 320 1.754803 ACTAATGATCTCCGTCCGCAA 59.245 47.619 0.00 0.00 0.00 4.85
320 321 2.167693 ACTAATGATCTCCGTCCGCAAA 59.832 45.455 0.00 0.00 0.00 3.68
321 322 2.107950 AATGATCTCCGTCCGCAAAA 57.892 45.000 0.00 0.00 0.00 2.44
322 323 2.332063 ATGATCTCCGTCCGCAAAAT 57.668 45.000 0.00 0.00 0.00 1.82
323 324 1.651987 TGATCTCCGTCCGCAAAATC 58.348 50.000 0.00 0.00 0.00 2.17
324 325 1.066502 TGATCTCCGTCCGCAAAATCA 60.067 47.619 0.00 0.00 0.00 2.57
325 326 2.006888 GATCTCCGTCCGCAAAATCAA 58.993 47.619 0.00 0.00 0.00 2.57
326 327 1.885560 TCTCCGTCCGCAAAATCAAA 58.114 45.000 0.00 0.00 0.00 2.69
327 328 1.533731 TCTCCGTCCGCAAAATCAAAC 59.466 47.619 0.00 0.00 0.00 2.93
328 329 0.594110 TCCGTCCGCAAAATCAAACC 59.406 50.000 0.00 0.00 0.00 3.27
329 330 0.727793 CCGTCCGCAAAATCAAACCG 60.728 55.000 0.00 0.00 0.00 4.44
330 331 0.727793 CGTCCGCAAAATCAAACCGG 60.728 55.000 0.00 0.00 40.25 5.28
331 332 1.006825 GTCCGCAAAATCAAACCGGC 61.007 55.000 0.00 0.00 38.85 6.13
332 333 1.006805 CCGCAAAATCAAACCGGCA 60.007 52.632 0.00 0.00 31.87 5.69
333 334 1.281566 CCGCAAAATCAAACCGGCAC 61.282 55.000 0.00 0.00 31.87 5.01
334 335 0.318614 CGCAAAATCAAACCGGCACT 60.319 50.000 0.00 0.00 0.00 4.40
335 336 1.068885 CGCAAAATCAAACCGGCACTA 60.069 47.619 0.00 0.00 0.00 2.74
336 337 2.605823 CGCAAAATCAAACCGGCACTAA 60.606 45.455 0.00 0.00 0.00 2.24
337 338 3.584834 GCAAAATCAAACCGGCACTAAT 58.415 40.909 0.00 0.00 0.00 1.73
338 339 3.367630 GCAAAATCAAACCGGCACTAATG 59.632 43.478 0.00 0.00 0.00 1.90
339 340 4.555262 CAAAATCAAACCGGCACTAATGT 58.445 39.130 0.00 0.00 0.00 2.71
340 341 3.848272 AATCAAACCGGCACTAATGTG 57.152 42.857 0.00 0.00 46.37 3.21
356 357 2.363306 TGTGCTTCACATTTGACCCT 57.637 45.000 0.00 0.00 39.62 4.34
357 358 2.665165 TGTGCTTCACATTTGACCCTT 58.335 42.857 0.00 0.00 39.62 3.95
358 359 3.030291 TGTGCTTCACATTTGACCCTTT 58.970 40.909 0.00 0.00 39.62 3.11
359 360 3.450457 TGTGCTTCACATTTGACCCTTTT 59.550 39.130 0.00 0.00 39.62 2.27
360 361 4.081198 TGTGCTTCACATTTGACCCTTTTT 60.081 37.500 0.00 0.00 39.62 1.94
361 362 4.507756 GTGCTTCACATTTGACCCTTTTTC 59.492 41.667 0.00 0.00 34.08 2.29
362 363 4.405358 TGCTTCACATTTGACCCTTTTTCT 59.595 37.500 0.00 0.00 0.00 2.52
363 364 5.596361 TGCTTCACATTTGACCCTTTTTCTA 59.404 36.000 0.00 0.00 0.00 2.10
364 365 5.920840 GCTTCACATTTGACCCTTTTTCTAC 59.079 40.000 0.00 0.00 0.00 2.59
365 366 6.239036 GCTTCACATTTGACCCTTTTTCTACT 60.239 38.462 0.00 0.00 0.00 2.57
366 367 7.040686 GCTTCACATTTGACCCTTTTTCTACTA 60.041 37.037 0.00 0.00 0.00 1.82
367 368 7.979444 TCACATTTGACCCTTTTTCTACTAG 57.021 36.000 0.00 0.00 0.00 2.57
368 369 7.514721 TCACATTTGACCCTTTTTCTACTAGT 58.485 34.615 0.00 0.00 0.00 2.57
373 374 4.041198 TGACCCTTTTTCTACTAGTGTGGG 59.959 45.833 5.39 8.53 38.13 4.61
473 492 2.417719 GTGCAGGTTCGTGATTCTTCT 58.582 47.619 0.00 0.00 0.00 2.85
595 617 2.370349 CTACACGTGATGGGAGAGAGT 58.630 52.381 25.01 0.00 0.00 3.24
596 618 0.891373 ACACGTGATGGGAGAGAGTG 59.109 55.000 25.01 0.00 0.00 3.51
845 886 9.832445 TTTCTATTGTCTCCACTAATAATCACC 57.168 33.333 0.00 0.00 0.00 4.02
846 887 7.963532 TCTATTGTCTCCACTAATAATCACCC 58.036 38.462 0.00 0.00 0.00 4.61
847 888 5.367945 TTGTCTCCACTAATAATCACCCC 57.632 43.478 0.00 0.00 0.00 4.95
848 889 3.714798 TGTCTCCACTAATAATCACCCCC 59.285 47.826 0.00 0.00 0.00 5.40
849 890 3.974642 GTCTCCACTAATAATCACCCCCT 59.025 47.826 0.00 0.00 0.00 4.79
850 891 4.040584 GTCTCCACTAATAATCACCCCCTC 59.959 50.000 0.00 0.00 0.00 4.30
851 892 3.973973 CTCCACTAATAATCACCCCCTCA 59.026 47.826 0.00 0.00 0.00 3.86
852 893 3.714798 TCCACTAATAATCACCCCCTCAC 59.285 47.826 0.00 0.00 0.00 3.51
853 894 3.181443 CCACTAATAATCACCCCCTCACC 60.181 52.174 0.00 0.00 0.00 4.02
854 895 3.053826 ACTAATAATCACCCCCTCACCC 58.946 50.000 0.00 0.00 0.00 4.61
855 896 1.231963 AATAATCACCCCCTCACCCC 58.768 55.000 0.00 0.00 0.00 4.95
856 897 0.350541 ATAATCACCCCCTCACCCCT 59.649 55.000 0.00 0.00 0.00 4.79
857 898 0.327191 TAATCACCCCCTCACCCCTC 60.327 60.000 0.00 0.00 0.00 4.30
858 899 4.715130 TCACCCCCTCACCCCTCG 62.715 72.222 0.00 0.00 0.00 4.63
861 902 4.499116 CCCCCTCACCCCTCGGAT 62.499 72.222 0.00 0.00 0.00 4.18
862 903 3.164269 CCCCTCACCCCTCGGATG 61.164 72.222 0.00 0.00 0.00 3.51
863 904 3.866582 CCCTCACCCCTCGGATGC 61.867 72.222 0.00 0.00 0.00 3.91
919 960 1.623542 AAGGCCGCTACCGAATTCCT 61.624 55.000 0.00 0.00 36.29 3.36
1205 1290 1.191647 GTACACGGTGAGTTTCTTGCG 59.808 52.381 16.29 0.00 0.00 4.85
1213 1298 1.416401 TGAGTTTCTTGCGTCCTCCTT 59.584 47.619 0.00 0.00 0.00 3.36
1214 1299 1.801178 GAGTTTCTTGCGTCCTCCTTG 59.199 52.381 0.00 0.00 0.00 3.61
1216 1301 0.108585 TTTCTTGCGTCCTCCTTGCT 59.891 50.000 0.00 0.00 0.00 3.91
1217 1302 0.603707 TTCTTGCGTCCTCCTTGCTG 60.604 55.000 0.00 0.00 0.00 4.41
1218 1303 1.302033 CTTGCGTCCTCCTTGCTGT 60.302 57.895 0.00 0.00 0.00 4.40
1219 1304 1.294659 CTTGCGTCCTCCTTGCTGTC 61.295 60.000 0.00 0.00 0.00 3.51
1220 1305 1.758440 TTGCGTCCTCCTTGCTGTCT 61.758 55.000 0.00 0.00 0.00 3.41
1223 1308 1.254284 CGTCCTCCTTGCTGTCTCCT 61.254 60.000 0.00 0.00 0.00 3.69
1224 1309 0.248843 GTCCTCCTTGCTGTCTCCTG 59.751 60.000 0.00 0.00 0.00 3.86
1225 1310 0.906756 TCCTCCTTGCTGTCTCCTGG 60.907 60.000 0.00 0.00 0.00 4.45
1273 1368 0.179129 TTTCGCCGGTATCTCGTTCC 60.179 55.000 1.90 0.00 0.00 3.62
1275 1370 1.033746 TCGCCGGTATCTCGTTCCTT 61.034 55.000 1.90 0.00 0.00 3.36
1277 1372 0.594284 GCCGGTATCTCGTTCCTTCG 60.594 60.000 1.90 0.00 0.00 3.79
1284 1379 4.345962 TCGTTCCTTCGGCGCGAA 62.346 61.111 12.10 12.72 43.75 4.70
1354 1449 1.896660 GTTTCCTGCGCCCAGTTCA 60.897 57.895 4.18 0.00 37.38 3.18
1543 1728 1.071542 TGCGAGTTCTTGGTCCAATCA 59.928 47.619 4.34 0.00 0.00 2.57
1594 1812 2.115266 CCTTTGTTGTCCGGGCCT 59.885 61.111 2.12 0.00 0.00 5.19
1620 1838 4.220602 AGTTCTGGTTTTCACTGCACTTTT 59.779 37.500 0.00 0.00 0.00 2.27
1696 2298 6.239120 CCATGCCATTTTTCTAGTATCAAGGG 60.239 42.308 0.00 0.00 0.00 3.95
1774 2388 3.379688 GGCAAGAGGATGAGGTGAAAATC 59.620 47.826 0.00 0.00 0.00 2.17
1796 2413 2.618241 TGTGTTCCTTTGCTGCTACTTG 59.382 45.455 0.00 0.00 0.00 3.16
1825 2442 5.875224 TCAATTCCATGACTTGGTGACTTA 58.125 37.500 7.22 0.00 46.52 2.24
1830 2447 5.305585 TCCATGACTTGGTGACTTAAGTTC 58.694 41.667 10.02 6.40 46.52 3.01
1845 2463 8.188139 TGACTTAAGTTCTTTGTCCAATTGTTC 58.812 33.333 10.02 0.00 0.00 3.18
1846 2464 7.489160 ACTTAAGTTCTTTGTCCAATTGTTCC 58.511 34.615 1.12 0.00 0.00 3.62
1847 2465 4.568152 AGTTCTTTGTCCAATTGTTCCG 57.432 40.909 4.43 0.00 0.00 4.30
1848 2466 4.204012 AGTTCTTTGTCCAATTGTTCCGA 58.796 39.130 4.43 0.00 0.00 4.55
1849 2467 4.642885 AGTTCTTTGTCCAATTGTTCCGAA 59.357 37.500 4.43 0.00 0.00 4.30
1850 2468 4.561735 TCTTTGTCCAATTGTTCCGAAC 57.438 40.909 4.43 4.18 0.00 3.95
1851 2469 3.948473 TCTTTGTCCAATTGTTCCGAACA 59.052 39.130 9.99 9.99 40.21 3.18
1857 2475 4.023193 GTCCAATTGTTCCGAACAGTGAAT 60.023 41.667 20.59 8.74 43.27 2.57
1887 2505 0.900182 ATGCCTCGTCAGTCCTCACA 60.900 55.000 0.00 0.00 0.00 3.58
2252 2929 1.594293 CCGCCGTGTTCTCAGTGTT 60.594 57.895 0.00 0.00 0.00 3.32
2330 3199 5.355596 AGAAAATCATAGCTCCTCTGTTCG 58.644 41.667 0.00 0.00 0.00 3.95
2499 3428 1.689959 CATTCGCCTTGTTTGAGTGC 58.310 50.000 0.00 0.00 0.00 4.40
2545 3477 2.158475 TCAAACTGCAGTCATTCCCCTT 60.158 45.455 21.95 4.95 0.00 3.95
2547 3479 0.773644 ACTGCAGTCATTCCCCTTGT 59.226 50.000 15.25 0.00 0.00 3.16
2548 3480 1.145738 ACTGCAGTCATTCCCCTTGTT 59.854 47.619 15.25 0.00 0.00 2.83
2549 3481 2.242043 CTGCAGTCATTCCCCTTGTTT 58.758 47.619 5.25 0.00 0.00 2.83
2550 3482 1.962807 TGCAGTCATTCCCCTTGTTTG 59.037 47.619 0.00 0.00 0.00 2.93
2551 3483 2.238521 GCAGTCATTCCCCTTGTTTGA 58.761 47.619 0.00 0.00 0.00 2.69
2552 3484 2.229784 GCAGTCATTCCCCTTGTTTGAG 59.770 50.000 0.00 0.00 0.00 3.02
2553 3485 3.490348 CAGTCATTCCCCTTGTTTGAGT 58.510 45.455 0.00 0.00 0.00 3.41
2554 3486 3.254166 CAGTCATTCCCCTTGTTTGAGTG 59.746 47.826 0.00 0.00 33.05 3.51
2555 3487 2.029918 GTCATTCCCCTTGTTTGAGTGC 60.030 50.000 0.00 0.00 0.00 4.40
2556 3488 2.158475 TCATTCCCCTTGTTTGAGTGCT 60.158 45.455 0.00 0.00 0.00 4.40
2557 3489 2.452600 TTCCCCTTGTTTGAGTGCTT 57.547 45.000 0.00 0.00 0.00 3.91
2558 3490 1.691196 TCCCCTTGTTTGAGTGCTTG 58.309 50.000 0.00 0.00 0.00 4.01
2559 3491 1.064017 TCCCCTTGTTTGAGTGCTTGT 60.064 47.619 0.00 0.00 0.00 3.16
2560 3492 1.756538 CCCCTTGTTTGAGTGCTTGTT 59.243 47.619 0.00 0.00 0.00 2.83
2561 3493 2.955660 CCCCTTGTTTGAGTGCTTGTTA 59.044 45.455 0.00 0.00 0.00 2.41
2562 3494 3.243401 CCCCTTGTTTGAGTGCTTGTTAC 60.243 47.826 0.00 0.00 0.00 2.50
2563 3495 3.380004 CCCTTGTTTGAGTGCTTGTTACA 59.620 43.478 0.00 0.00 0.00 2.41
2564 3496 4.037923 CCCTTGTTTGAGTGCTTGTTACAT 59.962 41.667 0.00 0.00 0.00 2.29
2565 3497 4.977963 CCTTGTTTGAGTGCTTGTTACATG 59.022 41.667 0.00 0.00 0.00 3.21
2566 3498 3.963665 TGTTTGAGTGCTTGTTACATGC 58.036 40.909 15.04 15.04 35.51 4.06
2567 3499 3.631686 TGTTTGAGTGCTTGTTACATGCT 59.368 39.130 20.88 4.97 35.87 3.79
2568 3500 4.819088 TGTTTGAGTGCTTGTTACATGCTA 59.181 37.500 20.88 7.72 35.87 3.49
2569 3501 5.298026 TGTTTGAGTGCTTGTTACATGCTAA 59.702 36.000 20.88 10.26 35.87 3.09
2570 3502 6.016360 TGTTTGAGTGCTTGTTACATGCTAAT 60.016 34.615 20.88 9.25 35.87 1.73
2620 3552 9.362539 CATTGACTTCTTATTTGAATCCTTTGG 57.637 33.333 0.00 0.00 0.00 3.28
2640 3598 9.927668 CCTTTGGTGTTAATTTTCATAGATGTT 57.072 29.630 0.00 0.00 0.00 2.71
2673 3631 5.564651 CGCAATTACAAGTGGAAACTGGAAT 60.565 40.000 0.00 0.00 0.00 3.01
2747 3708 5.153950 ACAGGAGAAGTTCTTATGTGACC 57.846 43.478 18.12 9.06 28.50 4.02
2749 3710 5.046950 ACAGGAGAAGTTCTTATGTGACCTC 60.047 44.000 18.12 0.00 28.50 3.85
2758 3719 8.779354 AGTTCTTATGTGACCTCAAATAAGTC 57.221 34.615 18.69 14.53 46.70 3.01
2772 3733 7.270757 TCAAATAAGTCTTAGCTTTGCACAA 57.729 32.000 11.46 0.00 0.00 3.33
2798 3759 7.038048 TGTGATCGATGATCCTTATCTAATGC 58.962 38.462 0.54 0.00 38.20 3.56
2837 3800 4.038271 TGAAGGCCTCATGTCATTTTCT 57.962 40.909 5.23 0.00 0.00 2.52
2908 3873 0.715551 GCTTACAATTTGCGCCTTGC 59.284 50.000 4.18 0.00 46.70 4.01
3081 4048 3.164268 TCAAGGTAAGTTTGCATGGCAT 58.836 40.909 0.00 0.00 38.76 4.40
3298 4266 6.183360 TGGCATCGAAGTTTGATATGACTCTA 60.183 38.462 5.24 0.00 0.00 2.43
3477 4451 8.034215 GCTTCTGTATGTATTCTCATAGCTCAT 58.966 37.037 0.00 0.00 32.01 2.90
3526 4504 5.878116 TCGTAACCCCAATTCTTCTGTAATG 59.122 40.000 0.00 0.00 0.00 1.90
3595 4581 9.941325 ATACTTGCCAAAAATAATTTGATGTCA 57.059 25.926 2.64 0.00 0.00 3.58
3617 4710 5.132648 TCACTTATGTGGCCTGAATTATCCT 59.867 40.000 3.32 0.00 43.94 3.24
3665 4759 3.852578 AGTTATCTGACCCCTTCCACATT 59.147 43.478 0.00 0.00 0.00 2.71
3729 5363 5.990120 AAAATCCATGCTACTCTTGCTTT 57.010 34.783 0.00 0.00 0.00 3.51
3730 5364 5.990120 AAATCCATGCTACTCTTGCTTTT 57.010 34.783 0.00 0.00 0.00 2.27
3941 5688 5.309323 TGGTCTTAGCGAATTCCAAAATG 57.691 39.130 0.00 0.00 0.00 2.32
3987 5743 4.159506 GGTTATGCAGAGTGAGAAGAGAGT 59.840 45.833 0.00 0.00 0.00 3.24
4049 5808 3.434940 TTAAGGAAAGACTGGGGAAGC 57.565 47.619 0.00 0.00 0.00 3.86
4052 5811 0.693049 GGAAAGACTGGGGAAGCTCA 59.307 55.000 0.00 0.00 0.00 4.26
4053 5812 1.283321 GGAAAGACTGGGGAAGCTCAT 59.717 52.381 0.00 0.00 0.00 2.90
4054 5813 2.505819 GGAAAGACTGGGGAAGCTCATA 59.494 50.000 0.00 0.00 0.00 2.15
4055 5814 3.137360 GGAAAGACTGGGGAAGCTCATAT 59.863 47.826 0.00 0.00 0.00 1.78
4057 5816 4.965200 AAGACTGGGGAAGCTCATATAC 57.035 45.455 0.00 0.00 0.00 1.47
4058 5817 3.928754 AGACTGGGGAAGCTCATATACA 58.071 45.455 0.00 0.00 0.00 2.29
4059 5818 4.497516 AGACTGGGGAAGCTCATATACAT 58.502 43.478 0.00 0.00 0.00 2.29
4060 5819 4.285517 AGACTGGGGAAGCTCATATACATG 59.714 45.833 0.00 0.00 0.00 3.21
4062 5821 5.155161 ACTGGGGAAGCTCATATACATGTA 58.845 41.667 8.27 8.27 33.57 2.29
4098 6440 8.841444 AACGAATATGATTTTGTCTGCATAAC 57.159 30.769 0.00 0.00 0.00 1.89
4148 6490 3.691118 TGTCTGCATGTTATTTCAGGAGC 59.309 43.478 0.00 0.00 0.00 4.70
4228 6575 7.408132 TCTAGTGATTTTCTTTGACAAGACG 57.592 36.000 0.00 0.00 38.86 4.18
4238 6585 6.281848 TCTTTGACAAGACGTGACATTAAC 57.718 37.500 0.00 0.00 33.80 2.01
4517 6867 4.777366 ACAAACCATTTATCCCTGGAAAGG 59.223 41.667 0.00 0.00 36.35 3.11
4989 7470 1.004044 ACTGGAGATTGGAAGTGGCAG 59.996 52.381 0.00 0.00 0.00 4.85
4996 7477 0.609957 TTGGAAGTGGCAGCCTGATG 60.610 55.000 14.15 0.00 0.00 3.07
5032 7513 0.318445 CTTTGCTGACCTTGCTGTGC 60.318 55.000 0.00 0.00 0.00 4.57
5071 7552 7.502232 CGATATTTTGTATCGCAAGTAAACG 57.498 36.000 4.75 0.00 39.99 3.60
5215 7738 1.398390 CCACAAGCTGTTCTATTCGCC 59.602 52.381 0.00 0.00 0.00 5.54
5253 7777 8.251721 AGTGTAGTAGTTTTAACTAGGCATCAG 58.748 37.037 2.68 0.00 41.81 2.90
5299 7823 9.336462 TGCATTGGGAAATGGGAATATATATTT 57.664 29.630 9.33 0.00 0.00 1.40
5500 8047 4.280929 ACTTGGTGAGCTTTTTGGGATAAC 59.719 41.667 0.00 0.00 0.00 1.89
5607 8205 8.670521 AAAATCATCCCCTCCAAATATATTCC 57.329 34.615 0.00 0.00 0.00 3.01
5608 8206 6.993288 ATCATCCCCTCCAAATATATTCCA 57.007 37.500 0.00 0.00 0.00 3.53
5781 8382 7.523380 CGTCTTATATTTTCGGATGGAGGTAGT 60.523 40.741 0.00 0.00 0.00 2.73
5800 8401 5.826208 GGTAGTCTCTCCTCTCTCCTTTAAG 59.174 48.000 0.00 0.00 0.00 1.85
5836 8437 9.708092 ATATCTGATGTGACATCTCTTACAATG 57.292 33.333 24.31 5.74 0.00 2.82
5857 8458 7.606073 ACAATGCGCCTATGTCACAATATTATA 59.394 33.333 4.18 0.00 0.00 0.98
5859 8460 6.697395 TGCGCCTATGTCACAATATTATACT 58.303 36.000 4.18 0.00 0.00 2.12
5928 8531 6.223120 ACAAAAAGAACAAATGGTCATAGCC 58.777 36.000 0.69 0.00 33.22 3.93
5982 8931 1.219935 GCAAACCGACCCGTATCCT 59.780 57.895 0.00 0.00 0.00 3.24
5983 8932 0.808847 GCAAACCGACCCGTATCCTC 60.809 60.000 0.00 0.00 0.00 3.71
6036 8985 0.528924 CAACGTGGACCTGTATCGGA 59.471 55.000 0.00 0.00 0.00 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.174389 AGACTGCACGGAGCTATGTG 59.826 55.000 12.31 12.31 45.94 3.21
4 5 1.405463 TGTAGACTGCACGGAGCTATG 59.595 52.381 3.79 0.00 45.94 2.23
5 6 1.405821 GTGTAGACTGCACGGAGCTAT 59.594 52.381 7.98 0.00 45.94 2.97
6 7 0.809385 GTGTAGACTGCACGGAGCTA 59.191 55.000 7.98 0.00 45.94 3.32
7 8 0.896019 AGTGTAGACTGCACGGAGCT 60.896 55.000 16.66 0.00 45.94 4.09
8 9 0.809385 TAGTGTAGACTGCACGGAGC 59.191 55.000 16.66 0.00 41.36 4.70
9 10 3.489398 GGAATAGTGTAGACTGCACGGAG 60.489 52.174 16.66 0.00 41.36 4.63
10 11 2.426024 GGAATAGTGTAGACTGCACGGA 59.574 50.000 16.66 10.23 41.36 4.69
11 12 2.427453 AGGAATAGTGTAGACTGCACGG 59.573 50.000 16.66 0.00 41.36 4.94
12 13 3.128764 TGAGGAATAGTGTAGACTGCACG 59.871 47.826 16.66 0.00 41.36 5.34
13 14 4.720649 TGAGGAATAGTGTAGACTGCAC 57.279 45.455 15.16 15.16 37.13 4.57
14 15 4.160439 CCTTGAGGAATAGTGTAGACTGCA 59.840 45.833 2.10 0.00 37.39 4.41
15 16 4.688021 CCTTGAGGAATAGTGTAGACTGC 58.312 47.826 2.10 0.00 37.39 4.40
16 17 4.404073 AGCCTTGAGGAATAGTGTAGACTG 59.596 45.833 2.10 0.00 37.39 3.51
17 18 4.615513 AGCCTTGAGGAATAGTGTAGACT 58.384 43.478 0.06 0.00 37.39 3.24
18 19 5.346181 AAGCCTTGAGGAATAGTGTAGAC 57.654 43.478 0.06 0.00 37.39 2.59
19 20 7.490657 TTTAAGCCTTGAGGAATAGTGTAGA 57.509 36.000 0.06 0.00 37.39 2.59
20 21 6.258947 GCTTTAAGCCTTGAGGAATAGTGTAG 59.741 42.308 5.52 0.00 34.48 2.74
21 22 6.070194 AGCTTTAAGCCTTGAGGAATAGTGTA 60.070 38.462 13.84 0.00 43.77 2.90
22 23 4.944317 GCTTTAAGCCTTGAGGAATAGTGT 59.056 41.667 5.52 0.00 34.48 3.55
23 24 5.189180 AGCTTTAAGCCTTGAGGAATAGTG 58.811 41.667 13.84 0.00 43.77 2.74
24 25 5.443230 AGCTTTAAGCCTTGAGGAATAGT 57.557 39.130 13.84 0.00 43.77 2.12
25 26 6.017523 GCTTAGCTTTAAGCCTTGAGGAATAG 60.018 42.308 13.84 0.00 43.77 1.73
26 27 5.823045 GCTTAGCTTTAAGCCTTGAGGAATA 59.177 40.000 13.84 0.00 43.77 1.75
27 28 4.642437 GCTTAGCTTTAAGCCTTGAGGAAT 59.358 41.667 13.84 0.00 43.77 3.01
28 29 4.010349 GCTTAGCTTTAAGCCTTGAGGAA 58.990 43.478 13.84 0.00 43.77 3.36
29 30 3.610911 GCTTAGCTTTAAGCCTTGAGGA 58.389 45.455 13.84 0.00 43.77 3.71
38 39 3.186409 TCTGCACGTTGCTTAGCTTTAAG 59.814 43.478 5.60 0.00 45.31 1.85
39 40 3.135225 TCTGCACGTTGCTTAGCTTTAA 58.865 40.909 5.60 0.00 45.31 1.52
40 41 2.761559 TCTGCACGTTGCTTAGCTTTA 58.238 42.857 5.60 0.00 45.31 1.85
41 42 1.593196 TCTGCACGTTGCTTAGCTTT 58.407 45.000 5.60 0.00 45.31 3.51
42 43 1.466167 CATCTGCACGTTGCTTAGCTT 59.534 47.619 5.60 0.00 45.31 3.74
43 44 1.081892 CATCTGCACGTTGCTTAGCT 58.918 50.000 5.60 0.00 45.31 3.32
44 45 1.061711 CTCATCTGCACGTTGCTTAGC 59.938 52.381 0.00 0.00 45.31 3.09
45 46 1.061711 GCTCATCTGCACGTTGCTTAG 59.938 52.381 10.54 2.44 45.31 2.18
46 47 1.078709 GCTCATCTGCACGTTGCTTA 58.921 50.000 10.54 1.01 45.31 3.09
47 48 0.886043 TGCTCATCTGCACGTTGCTT 60.886 50.000 10.54 0.00 45.31 3.91
48 49 0.675837 ATGCTCATCTGCACGTTGCT 60.676 50.000 10.54 0.00 46.33 3.91
49 50 0.169672 AATGCTCATCTGCACGTTGC 59.830 50.000 3.44 3.44 46.33 4.17
50 51 1.891178 CAATGCTCATCTGCACGTTG 58.109 50.000 0.00 0.00 46.33 4.10
51 52 0.169672 GCAATGCTCATCTGCACGTT 59.830 50.000 0.00 0.00 46.33 3.99
52 53 1.798735 GCAATGCTCATCTGCACGT 59.201 52.632 0.00 0.00 46.33 4.49
53 54 1.297378 CGCAATGCTCATCTGCACG 60.297 57.895 2.94 0.00 46.33 5.34
54 55 1.585521 GCGCAATGCTCATCTGCAC 60.586 57.895 0.30 4.65 46.33 4.57
56 57 2.025727 GGCGCAATGCTCATCTGC 59.974 61.111 10.83 0.00 45.43 4.26
57 58 0.814410 AGAGGCGCAATGCTCATCTG 60.814 55.000 11.68 0.00 45.43 2.90
58 59 0.532417 GAGAGGCGCAATGCTCATCT 60.532 55.000 12.29 12.29 45.43 2.90
59 60 1.505477 GGAGAGGCGCAATGCTCATC 61.505 60.000 10.83 1.29 45.43 2.92
60 61 1.525535 GGAGAGGCGCAATGCTCAT 60.526 57.895 10.83 0.00 45.43 2.90
61 62 2.124983 GGAGAGGCGCAATGCTCA 60.125 61.111 10.83 0.00 45.43 4.26
62 63 1.435408 GAAGGAGAGGCGCAATGCTC 61.435 60.000 10.83 6.50 45.43 4.26
63 64 1.451028 GAAGGAGAGGCGCAATGCT 60.451 57.895 10.83 1.11 45.43 3.79
64 65 1.099879 ATGAAGGAGAGGCGCAATGC 61.100 55.000 10.83 0.00 45.38 3.56
65 66 0.942962 GATGAAGGAGAGGCGCAATG 59.057 55.000 10.83 0.00 0.00 2.82
66 67 0.531532 CGATGAAGGAGAGGCGCAAT 60.532 55.000 10.83 0.00 0.00 3.56
67 68 1.153568 CGATGAAGGAGAGGCGCAA 60.154 57.895 10.83 0.00 0.00 4.85
68 69 2.284798 GACGATGAAGGAGAGGCGCA 62.285 60.000 10.83 0.00 0.00 6.09
69 70 1.590259 GACGATGAAGGAGAGGCGC 60.590 63.158 0.00 0.00 0.00 6.53
70 71 0.030101 GAGACGATGAAGGAGAGGCG 59.970 60.000 0.00 0.00 0.00 5.52
71 72 1.066908 CAGAGACGATGAAGGAGAGGC 59.933 57.143 0.00 0.00 0.00 4.70
72 73 1.066908 GCAGAGACGATGAAGGAGAGG 59.933 57.143 0.00 0.00 0.00 3.69
73 74 1.747924 TGCAGAGACGATGAAGGAGAG 59.252 52.381 0.00 0.00 0.00 3.20
74 75 1.474478 GTGCAGAGACGATGAAGGAGA 59.526 52.381 0.00 0.00 0.00 3.71
75 76 1.476085 AGTGCAGAGACGATGAAGGAG 59.524 52.381 0.00 0.00 0.00 3.69
76 77 1.474478 GAGTGCAGAGACGATGAAGGA 59.526 52.381 0.00 0.00 0.00 3.36
77 78 1.203287 TGAGTGCAGAGACGATGAAGG 59.797 52.381 0.00 0.00 0.00 3.46
78 79 2.528125 CTGAGTGCAGAGACGATGAAG 58.472 52.381 0.00 0.00 45.17 3.02
79 80 1.203287 CCTGAGTGCAGAGACGATGAA 59.797 52.381 0.00 0.00 45.17 2.57
80 81 0.813821 CCTGAGTGCAGAGACGATGA 59.186 55.000 0.00 0.00 45.17 2.92
81 82 0.179116 CCCTGAGTGCAGAGACGATG 60.179 60.000 0.00 0.00 45.17 3.84
82 83 1.954362 GCCCTGAGTGCAGAGACGAT 61.954 60.000 0.00 0.00 45.17 3.73
83 84 2.640302 GCCCTGAGTGCAGAGACGA 61.640 63.158 0.00 0.00 45.17 4.20
84 85 2.125753 GCCCTGAGTGCAGAGACG 60.126 66.667 0.00 0.00 45.17 4.18
85 86 0.898320 TAAGCCCTGAGTGCAGAGAC 59.102 55.000 0.00 0.00 45.17 3.36
86 87 1.871418 ATAAGCCCTGAGTGCAGAGA 58.129 50.000 0.00 0.00 45.17 3.10
87 88 3.827008 TTATAAGCCCTGAGTGCAGAG 57.173 47.619 0.00 0.00 45.17 3.35
88 89 3.370527 GGTTTATAAGCCCTGAGTGCAGA 60.371 47.826 7.10 0.00 45.17 4.26
89 90 2.945668 GGTTTATAAGCCCTGAGTGCAG 59.054 50.000 7.10 0.00 41.93 4.41
90 91 2.679639 CGGTTTATAAGCCCTGAGTGCA 60.680 50.000 12.28 0.00 0.00 4.57
91 92 1.940613 CGGTTTATAAGCCCTGAGTGC 59.059 52.381 12.28 0.00 0.00 4.40
92 93 1.940613 GCGGTTTATAAGCCCTGAGTG 59.059 52.381 12.28 0.00 0.00 3.51
93 94 1.838077 AGCGGTTTATAAGCCCTGAGT 59.162 47.619 12.28 0.00 0.00 3.41
94 95 2.484889 GAGCGGTTTATAAGCCCTGAG 58.515 52.381 12.28 0.38 0.00 3.35
95 96 1.140252 GGAGCGGTTTATAAGCCCTGA 59.860 52.381 12.28 0.00 0.00 3.86
96 97 1.141053 AGGAGCGGTTTATAAGCCCTG 59.859 52.381 12.28 1.39 32.85 4.45
97 98 1.508256 AGGAGCGGTTTATAAGCCCT 58.492 50.000 12.28 10.15 0.00 5.19
98 99 2.367894 ACTAGGAGCGGTTTATAAGCCC 59.632 50.000 12.28 5.89 0.00 5.19
99 100 3.391049 CACTAGGAGCGGTTTATAAGCC 58.609 50.000 8.25 8.25 0.00 4.35
100 101 2.801111 GCACTAGGAGCGGTTTATAAGC 59.199 50.000 0.00 0.00 0.00 3.09
101 102 3.069729 AGGCACTAGGAGCGGTTTATAAG 59.930 47.826 0.00 0.00 36.02 1.73
102 103 3.036091 AGGCACTAGGAGCGGTTTATAA 58.964 45.455 0.00 0.00 36.02 0.98
103 104 2.626743 GAGGCACTAGGAGCGGTTTATA 59.373 50.000 0.00 0.00 41.55 0.98
104 105 1.413077 GAGGCACTAGGAGCGGTTTAT 59.587 52.381 0.00 0.00 41.55 1.40
105 106 0.822164 GAGGCACTAGGAGCGGTTTA 59.178 55.000 0.00 0.00 41.55 2.01
106 107 0.905337 AGAGGCACTAGGAGCGGTTT 60.905 55.000 0.00 0.00 41.55 3.27
107 108 1.305381 AGAGGCACTAGGAGCGGTT 60.305 57.895 0.00 0.00 41.55 4.44
108 109 1.755008 GAGAGGCACTAGGAGCGGT 60.755 63.158 0.00 0.00 41.55 5.68
109 110 1.452145 GAGAGAGGCACTAGGAGCGG 61.452 65.000 0.00 0.00 41.55 5.52
110 111 0.465460 AGAGAGAGGCACTAGGAGCG 60.465 60.000 0.00 0.00 41.55 5.03
111 112 1.681264 GAAGAGAGAGGCACTAGGAGC 59.319 57.143 0.00 0.00 41.55 4.70
112 113 1.946768 CGAAGAGAGAGGCACTAGGAG 59.053 57.143 0.00 0.00 41.55 3.69
113 114 2.019668 GCGAAGAGAGAGGCACTAGGA 61.020 57.143 0.00 0.00 41.55 2.94
114 115 0.383949 GCGAAGAGAGAGGCACTAGG 59.616 60.000 0.00 0.00 41.55 3.02
115 116 0.028770 CGCGAAGAGAGAGGCACTAG 59.971 60.000 0.00 0.00 41.55 2.57
116 117 0.392595 TCGCGAAGAGAGAGGCACTA 60.393 55.000 6.20 0.00 41.55 2.74
118 119 2.878429 TCGCGAAGAGAGAGGCAC 59.122 61.111 6.20 0.00 0.00 5.01
126 127 1.030488 TAGTCCCACCTCGCGAAGAG 61.030 60.000 12.53 3.06 46.44 2.85
127 128 0.609957 TTAGTCCCACCTCGCGAAGA 60.610 55.000 12.53 0.00 0.00 2.87
128 129 0.245539 TTTAGTCCCACCTCGCGAAG 59.754 55.000 11.33 6.75 0.00 3.79
129 130 0.680618 TTTTAGTCCCACCTCGCGAA 59.319 50.000 11.33 0.00 0.00 4.70
130 131 0.680618 TTTTTAGTCCCACCTCGCGA 59.319 50.000 9.26 9.26 0.00 5.87
131 132 3.220447 TTTTTAGTCCCACCTCGCG 57.780 52.632 0.00 0.00 0.00 5.87
150 151 8.619546 CGGTACTATAGTTTCTTAGTAAGCTGT 58.380 37.037 11.40 0.00 33.83 4.40
151 152 8.074972 CCGGTACTATAGTTTCTTAGTAAGCTG 58.925 40.741 11.40 0.00 33.83 4.24
152 153 7.777440 ACCGGTACTATAGTTTCTTAGTAAGCT 59.223 37.037 4.49 0.00 33.83 3.74
153 154 7.935520 ACCGGTACTATAGTTTCTTAGTAAGC 58.064 38.462 4.49 0.00 33.83 3.09
154 155 9.943163 GAACCGGTACTATAGTTTCTTAGTAAG 57.057 37.037 8.00 3.29 33.83 2.34
155 156 9.461312 TGAACCGGTACTATAGTTTCTTAGTAA 57.539 33.333 8.00 0.00 33.83 2.24
156 157 9.632638 ATGAACCGGTACTATAGTTTCTTAGTA 57.367 33.333 8.00 0.00 31.37 1.82
157 158 7.944729 TGAACCGGTACTATAGTTTCTTAGT 57.055 36.000 8.00 0.00 33.41 2.24
158 159 7.866393 CCATGAACCGGTACTATAGTTTCTTAG 59.134 40.741 8.00 3.30 0.00 2.18
159 160 7.685155 GCCATGAACCGGTACTATAGTTTCTTA 60.685 40.741 8.00 0.00 0.00 2.10
160 161 6.579865 CCATGAACCGGTACTATAGTTTCTT 58.420 40.000 8.00 4.05 0.00 2.52
161 162 5.452917 GCCATGAACCGGTACTATAGTTTCT 60.453 44.000 8.00 0.00 0.00 2.52
162 163 4.748600 GCCATGAACCGGTACTATAGTTTC 59.251 45.833 8.00 8.82 0.00 2.78
163 164 4.162698 TGCCATGAACCGGTACTATAGTTT 59.837 41.667 8.00 0.00 0.00 2.66
164 165 3.707611 TGCCATGAACCGGTACTATAGTT 59.292 43.478 8.00 0.00 0.00 2.24
165 166 3.069158 GTGCCATGAACCGGTACTATAGT 59.931 47.826 8.00 10.87 36.33 2.12
166 167 3.650139 GTGCCATGAACCGGTACTATAG 58.350 50.000 8.00 0.00 36.33 1.31
167 168 2.034939 CGTGCCATGAACCGGTACTATA 59.965 50.000 8.00 0.00 37.03 1.31
168 169 1.202486 CGTGCCATGAACCGGTACTAT 60.202 52.381 8.00 0.00 37.03 2.12
169 170 0.173935 CGTGCCATGAACCGGTACTA 59.826 55.000 8.00 0.00 37.03 1.82
170 171 1.079405 CGTGCCATGAACCGGTACT 60.079 57.895 8.00 0.00 37.03 2.73
171 172 0.671163 TTCGTGCCATGAACCGGTAC 60.671 55.000 8.00 0.00 35.94 3.34
172 173 0.671163 GTTCGTGCCATGAACCGGTA 60.671 55.000 17.21 0.00 37.98 4.02
173 174 1.964373 GTTCGTGCCATGAACCGGT 60.964 57.895 17.21 0.00 37.98 5.28
174 175 2.867472 GTTCGTGCCATGAACCGG 59.133 61.111 17.21 0.00 37.98 5.28
177 178 0.671163 TACCGGTTCGTGCCATGAAC 60.671 55.000 15.04 19.30 42.00 3.18
178 179 0.390603 CTACCGGTTCGTGCCATGAA 60.391 55.000 15.04 0.00 0.00 2.57
179 180 1.216977 CTACCGGTTCGTGCCATGA 59.783 57.895 15.04 0.00 0.00 3.07
180 181 0.173935 TACTACCGGTTCGTGCCATG 59.826 55.000 15.04 0.00 0.00 3.66
181 182 0.896923 TTACTACCGGTTCGTGCCAT 59.103 50.000 15.04 0.00 0.00 4.40
182 183 0.678395 TTTACTACCGGTTCGTGCCA 59.322 50.000 15.04 0.00 0.00 4.92
183 184 1.353076 CTTTACTACCGGTTCGTGCC 58.647 55.000 15.04 0.00 0.00 5.01
184 185 1.337167 ACCTTTACTACCGGTTCGTGC 60.337 52.381 15.04 0.00 0.00 5.34
185 186 2.331194 CACCTTTACTACCGGTTCGTG 58.669 52.381 15.04 5.21 0.00 4.35
186 187 1.337167 GCACCTTTACTACCGGTTCGT 60.337 52.381 15.04 13.70 0.00 3.85
187 188 1.353076 GCACCTTTACTACCGGTTCG 58.647 55.000 15.04 7.30 0.00 3.95
188 189 1.730501 GGCACCTTTACTACCGGTTC 58.269 55.000 15.04 0.00 0.00 3.62
189 190 3.942351 GGCACCTTTACTACCGGTT 57.058 52.632 15.04 0.00 0.00 4.44
207 208 4.722700 CAGGTTGGGGCCTCACGG 62.723 72.222 3.60 0.00 36.58 4.94
208 209 3.636231 TCAGGTTGGGGCCTCACG 61.636 66.667 3.60 0.00 36.58 4.35
209 210 2.034221 GTCAGGTTGGGGCCTCAC 59.966 66.667 3.60 0.00 36.58 3.51
210 211 3.256960 GGTCAGGTTGGGGCCTCA 61.257 66.667 0.00 0.00 36.58 3.86
211 212 3.256960 TGGTCAGGTTGGGGCCTC 61.257 66.667 0.84 0.00 36.58 4.70
212 213 3.580319 GTGGTCAGGTTGGGGCCT 61.580 66.667 0.84 0.00 39.99 5.19
213 214 3.868200 CTGTGGTCAGGTTGGGGCC 62.868 68.421 0.00 0.00 37.97 5.80
214 215 2.282462 CTGTGGTCAGGTTGGGGC 60.282 66.667 0.00 0.00 37.97 5.80
215 216 2.282462 GCTGTGGTCAGGTTGGGG 60.282 66.667 0.00 0.00 41.57 4.96
216 217 2.282462 GGCTGTGGTCAGGTTGGG 60.282 66.667 0.00 0.00 41.57 4.12
217 218 1.601759 CAGGCTGTGGTCAGGTTGG 60.602 63.158 6.28 0.00 41.57 3.77
218 219 0.886490 GTCAGGCTGTGGTCAGGTTG 60.886 60.000 15.27 0.00 41.57 3.77
219 220 1.451936 GTCAGGCTGTGGTCAGGTT 59.548 57.895 15.27 0.00 41.57 3.50
220 221 2.872388 CGTCAGGCTGTGGTCAGGT 61.872 63.158 15.27 0.00 41.57 4.00
221 222 2.047844 CGTCAGGCTGTGGTCAGG 60.048 66.667 15.27 0.00 41.57 3.86
222 223 2.740055 GCGTCAGGCTGTGGTCAG 60.740 66.667 15.27 2.25 43.87 3.51
223 224 3.519973 CTGCGTCAGGCTGTGGTCA 62.520 63.158 15.27 7.71 44.05 4.02
224 225 2.740055 CTGCGTCAGGCTGTGGTC 60.740 66.667 15.27 3.36 44.05 4.02
225 226 4.996434 GCTGCGTCAGGCTGTGGT 62.996 66.667 15.27 0.00 44.05 4.16
232 233 1.959042 ATTAATGAGGCTGCGTCAGG 58.041 50.000 26.25 0.00 31.81 3.86
233 234 2.802816 GGTATTAATGAGGCTGCGTCAG 59.197 50.000 26.25 2.92 31.81 3.51
234 235 2.801699 CGGTATTAATGAGGCTGCGTCA 60.802 50.000 24.93 24.93 32.83 4.35
235 236 1.792949 CGGTATTAATGAGGCTGCGTC 59.207 52.381 14.95 14.95 0.00 5.19
236 237 1.540363 CCGGTATTAATGAGGCTGCGT 60.540 52.381 0.00 0.00 0.00 5.24
237 238 1.148310 CCGGTATTAATGAGGCTGCG 58.852 55.000 0.00 0.00 0.00 5.18
238 239 2.256117 ACCGGTATTAATGAGGCTGC 57.744 50.000 4.49 0.00 0.00 5.25
239 240 2.800544 CGAACCGGTATTAATGAGGCTG 59.199 50.000 8.00 0.00 0.00 4.85
240 241 2.433239 ACGAACCGGTATTAATGAGGCT 59.567 45.455 8.00 0.00 0.00 4.58
241 242 2.542595 CACGAACCGGTATTAATGAGGC 59.457 50.000 8.00 0.00 0.00 4.70
242 243 3.800506 GTCACGAACCGGTATTAATGAGG 59.199 47.826 8.00 1.41 0.00 3.86
243 244 4.266976 GTGTCACGAACCGGTATTAATGAG 59.733 45.833 8.00 0.00 0.00 2.90
244 245 4.175516 GTGTCACGAACCGGTATTAATGA 58.824 43.478 8.00 5.11 0.00 2.57
245 246 3.000476 CGTGTCACGAACCGGTATTAATG 60.000 47.826 20.75 2.41 46.05 1.90
246 247 3.181397 CGTGTCACGAACCGGTATTAAT 58.819 45.455 20.75 0.00 46.05 1.40
247 248 2.594321 CGTGTCACGAACCGGTATTAA 58.406 47.619 20.75 0.00 46.05 1.40
248 249 2.261037 CGTGTCACGAACCGGTATTA 57.739 50.000 20.75 0.00 46.05 0.98
249 250 3.111536 CGTGTCACGAACCGGTATT 57.888 52.632 20.75 0.00 46.05 1.89
250 251 4.874534 CGTGTCACGAACCGGTAT 57.125 55.556 20.75 0.00 46.05 2.73
259 260 1.000233 CAGTACCGGTTCGTGTCACG 61.000 60.000 15.04 19.38 44.19 4.35
260 261 0.311790 TCAGTACCGGTTCGTGTCAC 59.688 55.000 15.04 1.99 0.00 3.67
261 262 1.001048 CTTCAGTACCGGTTCGTGTCA 60.001 52.381 15.04 0.00 0.00 3.58
262 263 1.267806 TCTTCAGTACCGGTTCGTGTC 59.732 52.381 15.04 0.00 0.00 3.67
263 264 1.321474 TCTTCAGTACCGGTTCGTGT 58.679 50.000 15.04 0.00 0.00 4.49
264 265 2.649331 ATCTTCAGTACCGGTTCGTG 57.351 50.000 15.04 8.43 0.00 4.35
265 266 2.929592 GCAATCTTCAGTACCGGTTCGT 60.930 50.000 15.04 0.00 0.00 3.85
266 267 1.659098 GCAATCTTCAGTACCGGTTCG 59.341 52.381 15.04 4.44 0.00 3.95
267 268 2.930682 GAGCAATCTTCAGTACCGGTTC 59.069 50.000 15.04 8.12 0.00 3.62
268 269 2.301870 TGAGCAATCTTCAGTACCGGTT 59.698 45.455 15.04 0.00 0.00 4.44
269 270 1.899814 TGAGCAATCTTCAGTACCGGT 59.100 47.619 13.98 13.98 0.00 5.28
270 271 2.271800 GTGAGCAATCTTCAGTACCGG 58.728 52.381 0.00 0.00 0.00 5.28
271 272 1.920574 CGTGAGCAATCTTCAGTACCG 59.079 52.381 0.00 0.00 0.00 4.02
272 273 3.232213 TCGTGAGCAATCTTCAGTACC 57.768 47.619 0.00 0.00 0.00 3.34
273 274 3.368236 GGTTCGTGAGCAATCTTCAGTAC 59.632 47.826 0.00 0.00 0.00 2.73
274 275 3.585862 GGTTCGTGAGCAATCTTCAGTA 58.414 45.455 0.00 0.00 0.00 2.74
275 276 2.417719 GGTTCGTGAGCAATCTTCAGT 58.582 47.619 0.00 0.00 0.00 3.41
276 277 1.391485 CGGTTCGTGAGCAATCTTCAG 59.609 52.381 0.00 0.00 0.00 3.02
277 278 1.428448 CGGTTCGTGAGCAATCTTCA 58.572 50.000 0.00 0.00 0.00 3.02
278 279 0.721718 CCGGTTCGTGAGCAATCTTC 59.278 55.000 0.00 0.00 0.00 2.87
279 280 0.034896 ACCGGTTCGTGAGCAATCTT 59.965 50.000 0.00 0.00 0.00 2.40
280 281 0.892755 TACCGGTTCGTGAGCAATCT 59.107 50.000 15.04 0.00 0.00 2.40
281 282 0.997196 GTACCGGTTCGTGAGCAATC 59.003 55.000 15.04 0.00 0.00 2.67
282 283 0.606604 AGTACCGGTTCGTGAGCAAT 59.393 50.000 15.04 0.00 0.00 3.56
283 284 1.246649 TAGTACCGGTTCGTGAGCAA 58.753 50.000 15.04 0.00 0.00 3.91
284 285 1.246649 TTAGTACCGGTTCGTGAGCA 58.753 50.000 15.04 0.00 0.00 4.26
285 286 2.159338 TCATTAGTACCGGTTCGTGAGC 60.159 50.000 15.04 0.00 0.00 4.26
286 287 3.770263 TCATTAGTACCGGTTCGTGAG 57.230 47.619 15.04 1.13 0.00 3.51
287 288 3.949754 AGATCATTAGTACCGGTTCGTGA 59.050 43.478 15.04 15.20 0.00 4.35
288 289 4.288531 GAGATCATTAGTACCGGTTCGTG 58.711 47.826 15.04 10.08 0.00 4.35
289 290 3.317430 GGAGATCATTAGTACCGGTTCGT 59.683 47.826 15.04 0.00 0.00 3.85
290 291 3.608707 CGGAGATCATTAGTACCGGTTCG 60.609 52.174 15.04 0.00 37.28 3.95
291 292 3.317430 ACGGAGATCATTAGTACCGGTTC 59.683 47.826 15.04 8.12 43.76 3.62
292 293 3.294214 ACGGAGATCATTAGTACCGGTT 58.706 45.455 15.04 0.00 43.76 4.44
293 294 2.883386 GACGGAGATCATTAGTACCGGT 59.117 50.000 13.98 13.98 43.76 5.28
294 295 2.228343 GGACGGAGATCATTAGTACCGG 59.772 54.545 0.00 0.00 43.76 5.28
295 296 2.095869 CGGACGGAGATCATTAGTACCG 60.096 54.545 0.00 0.00 44.77 4.02
296 297 2.351544 GCGGACGGAGATCATTAGTACC 60.352 54.545 0.00 0.00 0.00 3.34
297 298 2.292569 TGCGGACGGAGATCATTAGTAC 59.707 50.000 0.00 0.00 0.00 2.73
298 299 2.578786 TGCGGACGGAGATCATTAGTA 58.421 47.619 0.00 0.00 0.00 1.82
299 300 1.399714 TGCGGACGGAGATCATTAGT 58.600 50.000 0.00 0.00 0.00 2.24
300 301 2.509052 TTGCGGACGGAGATCATTAG 57.491 50.000 0.00 0.00 0.00 1.73
301 302 2.971660 TTTGCGGACGGAGATCATTA 57.028 45.000 0.00 0.00 0.00 1.90
302 303 2.107950 TTTTGCGGACGGAGATCATT 57.892 45.000 0.00 0.00 0.00 2.57
303 304 2.213499 GATTTTGCGGACGGAGATCAT 58.787 47.619 0.00 0.00 0.00 2.45
304 305 1.066502 TGATTTTGCGGACGGAGATCA 60.067 47.619 9.14 9.14 0.00 2.92
305 306 1.651987 TGATTTTGCGGACGGAGATC 58.348 50.000 0.00 0.00 0.00 2.75
306 307 2.107950 TTGATTTTGCGGACGGAGAT 57.892 45.000 0.00 0.00 0.00 2.75
307 308 1.533731 GTTTGATTTTGCGGACGGAGA 59.466 47.619 0.00 0.00 0.00 3.71
308 309 1.401018 GGTTTGATTTTGCGGACGGAG 60.401 52.381 0.00 0.00 0.00 4.63
309 310 0.594110 GGTTTGATTTTGCGGACGGA 59.406 50.000 0.00 0.00 0.00 4.69
310 311 0.727793 CGGTTTGATTTTGCGGACGG 60.728 55.000 0.00 0.00 0.00 4.79
311 312 0.727793 CCGGTTTGATTTTGCGGACG 60.728 55.000 0.00 0.00 0.00 4.79
312 313 1.006825 GCCGGTTTGATTTTGCGGAC 61.007 55.000 1.90 0.00 0.00 4.79
313 314 1.287503 GCCGGTTTGATTTTGCGGA 59.712 52.632 1.90 0.00 0.00 5.54
314 315 1.006805 TGCCGGTTTGATTTTGCGG 60.007 52.632 1.90 0.00 0.00 5.69
315 316 0.318614 AGTGCCGGTTTGATTTTGCG 60.319 50.000 1.90 0.00 0.00 4.85
316 317 2.715737 TAGTGCCGGTTTGATTTTGC 57.284 45.000 1.90 0.00 0.00 3.68
317 318 4.385447 CACATTAGTGCCGGTTTGATTTTG 59.615 41.667 1.90 0.00 39.21 2.44
318 319 4.555262 CACATTAGTGCCGGTTTGATTTT 58.445 39.130 1.90 0.00 39.21 1.82
319 320 4.173036 CACATTAGTGCCGGTTTGATTT 57.827 40.909 1.90 0.00 39.21 2.17
320 321 3.848272 CACATTAGTGCCGGTTTGATT 57.152 42.857 1.90 0.00 39.21 2.57
338 339 3.733443 AAAGGGTCAAATGTGAAGCAC 57.267 42.857 0.00 0.00 34.87 4.40
339 340 4.405358 AGAAAAAGGGTCAAATGTGAAGCA 59.595 37.500 0.00 0.00 34.87 3.91
340 341 4.948847 AGAAAAAGGGTCAAATGTGAAGC 58.051 39.130 0.00 0.00 34.87 3.86
341 342 7.277174 AGTAGAAAAAGGGTCAAATGTGAAG 57.723 36.000 0.00 0.00 34.87 3.02
342 343 7.996644 ACTAGTAGAAAAAGGGTCAAATGTGAA 59.003 33.333 3.59 0.00 34.87 3.18
343 344 7.444183 CACTAGTAGAAAAAGGGTCAAATGTGA 59.556 37.037 3.59 0.00 0.00 3.58
344 345 7.228706 ACACTAGTAGAAAAAGGGTCAAATGTG 59.771 37.037 3.59 0.00 0.00 3.21
345 346 7.228706 CACACTAGTAGAAAAAGGGTCAAATGT 59.771 37.037 3.59 0.00 0.00 2.71
346 347 7.308589 CCACACTAGTAGAAAAAGGGTCAAATG 60.309 40.741 3.59 0.00 0.00 2.32
347 348 6.715264 CCACACTAGTAGAAAAAGGGTCAAAT 59.285 38.462 3.59 0.00 0.00 2.32
348 349 6.059484 CCACACTAGTAGAAAAAGGGTCAAA 58.941 40.000 3.59 0.00 0.00 2.69
349 350 5.455612 CCCACACTAGTAGAAAAAGGGTCAA 60.456 44.000 3.59 0.00 0.00 3.18
350 351 4.041198 CCCACACTAGTAGAAAAAGGGTCA 59.959 45.833 3.59 0.00 0.00 4.02
351 352 4.576879 CCCACACTAGTAGAAAAAGGGTC 58.423 47.826 3.59 0.00 0.00 4.46
352 353 3.244805 GCCCACACTAGTAGAAAAAGGGT 60.245 47.826 3.59 0.00 36.17 4.34
353 354 3.244770 TGCCCACACTAGTAGAAAAAGGG 60.245 47.826 3.59 8.54 36.85 3.95
354 355 3.751698 GTGCCCACACTAGTAGAAAAAGG 59.248 47.826 3.59 0.00 43.85 3.11
367 368 2.361789 ACGGTTTATATGTGCCCACAC 58.638 47.619 2.82 0.00 45.05 3.82
368 369 2.791347 ACGGTTTATATGTGCCCACA 57.209 45.000 3.29 3.29 46.44 4.17
373 374 5.989777 ACTCCATCTAACGGTTTATATGTGC 59.010 40.000 0.00 0.00 0.00 4.57
382 383 3.956199 TCCGATTACTCCATCTAACGGTT 59.044 43.478 0.00 0.00 40.01 4.44
411 412 2.960129 CGCGAATCCCTACACCGC 60.960 66.667 0.00 0.00 42.11 5.68
417 418 0.529773 GATGTGCACGCGAATCCCTA 60.530 55.000 15.93 0.00 0.00 3.53
595 617 0.397941 CTTGCCACACTTCTCCCTCA 59.602 55.000 0.00 0.00 0.00 3.86
596 618 0.322008 CCTTGCCACACTTCTCCCTC 60.322 60.000 0.00 0.00 0.00 4.30
812 853 6.187727 AGTGGAGACAATAGAAAAACCTGA 57.812 37.500 0.00 0.00 46.06 3.86
823 864 6.043938 GGGGGTGATTATTAGTGGAGACAATA 59.956 42.308 0.00 0.00 46.06 1.90
844 885 4.499116 ATCCGAGGGGTGAGGGGG 62.499 72.222 0.00 0.00 33.83 5.40
845 886 3.164269 CATCCGAGGGGTGAGGGG 61.164 72.222 0.00 0.00 33.83 4.79
846 887 2.946988 TAGCATCCGAGGGGTGAGGG 62.947 65.000 0.00 0.00 33.83 4.30
847 888 1.457643 TAGCATCCGAGGGGTGAGG 60.458 63.158 0.00 0.00 33.83 3.86
848 889 0.757188 ACTAGCATCCGAGGGGTGAG 60.757 60.000 0.00 0.00 33.83 3.51
849 890 0.554305 TACTAGCATCCGAGGGGTGA 59.446 55.000 0.00 0.00 33.83 4.02
850 891 1.633774 ATACTAGCATCCGAGGGGTG 58.366 55.000 0.00 0.00 33.83 4.61
851 892 3.759815 ATATACTAGCATCCGAGGGGT 57.240 47.619 0.00 0.00 33.83 4.95
852 893 5.446860 TCTTATATACTAGCATCCGAGGGG 58.553 45.833 0.00 0.00 0.00 4.79
853 894 8.871629 ATATCTTATATACTAGCATCCGAGGG 57.128 38.462 0.00 0.00 0.00 4.30
854 895 9.733556 AGATATCTTATATACTAGCATCCGAGG 57.266 37.037 0.00 0.00 0.00 4.63
919 960 4.689549 TCGCCCCTCGGTTCCTGA 62.690 66.667 0.00 0.00 39.05 3.86
1205 1290 0.248843 CAGGAGACAGCAAGGAGGAC 59.751 60.000 0.00 0.00 0.00 3.85
1213 1298 1.754745 GTTCACCCAGGAGACAGCA 59.245 57.895 0.00 0.00 0.00 4.41
1214 1299 1.374758 CGTTCACCCAGGAGACAGC 60.375 63.158 0.00 0.00 0.00 4.40
1216 1301 2.879233 GCCGTTCACCCAGGAGACA 61.879 63.158 0.00 0.00 0.00 3.41
1217 1302 2.047179 GCCGTTCACCCAGGAGAC 60.047 66.667 0.00 0.00 0.00 3.36
1218 1303 3.691342 CGCCGTTCACCCAGGAGA 61.691 66.667 0.00 0.00 0.00 3.71
1219 1304 3.019003 ATCGCCGTTCACCCAGGAG 62.019 63.158 0.00 0.00 0.00 3.69
1220 1305 3.000819 ATCGCCGTTCACCCAGGA 61.001 61.111 0.00 0.00 0.00 3.86
1223 1308 3.185299 AACCATCGCCGTTCACCCA 62.185 57.895 0.00 0.00 0.00 4.51
1224 1309 2.359478 AACCATCGCCGTTCACCC 60.359 61.111 0.00 0.00 0.00 4.61
1225 1310 2.867472 CAACCATCGCCGTTCACC 59.133 61.111 0.00 0.00 0.00 4.02
1543 1728 2.943033 CCTTCAGTTTCCAAAGTCACGT 59.057 45.455 0.00 0.00 0.00 4.49
1594 1812 2.297701 GCAGTGAAAACCAGAACTCCA 58.702 47.619 0.00 0.00 0.00 3.86
1620 1838 6.264832 CACAAATGCAGAGAACAGTGTAAAA 58.735 36.000 0.00 0.00 0.00 1.52
1696 2298 3.036075 TCATCGTCATCATCATCCTGC 57.964 47.619 0.00 0.00 0.00 4.85
1752 2366 2.496899 TTTCACCTCATCCTCTTGCC 57.503 50.000 0.00 0.00 0.00 4.52
1774 2388 2.498167 AGTAGCAGCAAAGGAACACAG 58.502 47.619 0.00 0.00 0.00 3.66
1825 2442 4.642885 TCGGAACAATTGGACAAAGAACTT 59.357 37.500 10.83 0.00 0.00 2.66
1830 2447 4.202010 ACTGTTCGGAACAATTGGACAAAG 60.202 41.667 22.60 10.56 41.61 2.77
1845 2463 4.082190 TCCTTCTCTGTATTCACTGTTCGG 60.082 45.833 0.00 0.00 0.00 4.30
1846 2464 5.060662 TCCTTCTCTGTATTCACTGTTCG 57.939 43.478 0.00 0.00 0.00 3.95
1847 2465 5.293079 GCATCCTTCTCTGTATTCACTGTTC 59.707 44.000 0.00 0.00 0.00 3.18
1848 2466 5.181748 GCATCCTTCTCTGTATTCACTGTT 58.818 41.667 0.00 0.00 0.00 3.16
1849 2467 4.383552 GGCATCCTTCTCTGTATTCACTGT 60.384 45.833 0.00 0.00 0.00 3.55
1850 2468 4.125703 GGCATCCTTCTCTGTATTCACTG 58.874 47.826 0.00 0.00 0.00 3.66
1851 2469 4.036518 AGGCATCCTTCTCTGTATTCACT 58.963 43.478 0.00 0.00 0.00 3.41
1857 2475 2.025155 GACGAGGCATCCTTCTCTGTA 58.975 52.381 0.00 0.00 31.76 2.74
1887 2505 6.942576 ACAACTAGACAATTAATTCCAGCACT 59.057 34.615 0.00 0.00 0.00 4.40
2066 2743 7.751732 TGAACAATGGAATGTAGAATTTCTCG 58.248 34.615 1.27 0.00 32.02 4.04
2252 2929 1.301874 CCGCCGGAAAACACCACTA 60.302 57.895 5.05 0.00 0.00 2.74
2330 3199 6.200665 TGAAAGTTTATTCACTGCATTGTTGC 59.799 34.615 3.77 0.00 40.54 4.17
2473 3401 5.065218 ACTCAAACAAGGCGAATGCTAATAG 59.935 40.000 0.00 0.00 42.25 1.73
2545 3477 3.631686 AGCATGTAACAAGCACTCAAACA 59.368 39.130 0.00 0.00 29.93 2.83
2547 3479 6.573664 ATTAGCATGTAACAAGCACTCAAA 57.426 33.333 0.00 0.00 29.93 2.69
2548 3480 6.430925 AGAATTAGCATGTAACAAGCACTCAA 59.569 34.615 0.00 0.00 29.93 3.02
2549 3481 5.939883 AGAATTAGCATGTAACAAGCACTCA 59.060 36.000 0.00 0.00 29.93 3.41
2550 3482 6.428385 AGAATTAGCATGTAACAAGCACTC 57.572 37.500 0.00 0.00 29.93 3.51
2551 3483 7.012704 CCATAGAATTAGCATGTAACAAGCACT 59.987 37.037 0.00 0.00 29.93 4.40
2552 3484 7.134815 CCATAGAATTAGCATGTAACAAGCAC 58.865 38.462 0.00 0.00 29.93 4.40
2553 3485 6.828273 ACCATAGAATTAGCATGTAACAAGCA 59.172 34.615 0.00 0.00 29.93 3.91
2554 3486 7.264373 ACCATAGAATTAGCATGTAACAAGC 57.736 36.000 0.00 0.00 0.00 4.01
2555 3487 9.547753 AGTACCATAGAATTAGCATGTAACAAG 57.452 33.333 0.00 0.00 0.00 3.16
2561 3493 8.535335 CCAGATAGTACCATAGAATTAGCATGT 58.465 37.037 0.00 0.00 0.00 3.21
2562 3494 7.984050 CCCAGATAGTACCATAGAATTAGCATG 59.016 40.741 0.00 0.00 0.00 4.06
2563 3495 7.126421 CCCCAGATAGTACCATAGAATTAGCAT 59.874 40.741 0.00 0.00 0.00 3.79
2564 3496 6.440647 CCCCAGATAGTACCATAGAATTAGCA 59.559 42.308 0.00 0.00 0.00 3.49
2565 3497 6.668283 TCCCCAGATAGTACCATAGAATTAGC 59.332 42.308 0.00 0.00 0.00 3.09
2566 3498 8.666129 TTCCCCAGATAGTACCATAGAATTAG 57.334 38.462 0.00 0.00 0.00 1.73
2567 3499 8.461854 TCTTCCCCAGATAGTACCATAGAATTA 58.538 37.037 0.00 0.00 0.00 1.40
2568 3500 7.235812 GTCTTCCCCAGATAGTACCATAGAATT 59.764 40.741 0.00 0.00 32.60 2.17
2569 3501 6.726764 GTCTTCCCCAGATAGTACCATAGAAT 59.273 42.308 0.00 0.00 32.60 2.40
2570 3502 6.075984 GTCTTCCCCAGATAGTACCATAGAA 58.924 44.000 0.00 0.00 32.60 2.10
2640 3598 6.052360 TCCACTTGTAATTGCGCAGAATATA 58.948 36.000 11.31 0.71 0.00 0.86
2641 3599 4.881273 TCCACTTGTAATTGCGCAGAATAT 59.119 37.500 11.31 0.00 0.00 1.28
2673 3631 6.017192 ACATAAGGACCTTGTCAAGAGTAGA 58.983 40.000 17.47 0.00 33.68 2.59
2747 3708 6.902341 TGTGCAAAGCTAAGACTTATTTGAG 58.098 36.000 18.93 2.46 33.69 3.02
2749 3710 7.596248 ACATTGTGCAAAGCTAAGACTTATTTG 59.404 33.333 13.50 13.50 34.70 2.32
2758 3719 4.093514 CGATCACATTGTGCAAAGCTAAG 58.906 43.478 12.04 0.00 32.98 2.18
2772 3733 7.710044 GCATTAGATAAGGATCATCGATCACAT 59.290 37.037 0.00 0.00 40.50 3.21
2837 3800 5.421693 CACCAATCATCCACTTATTTGGGAA 59.578 40.000 0.00 0.00 37.24 3.97
2908 3873 5.389642 TTCGAATAAGTAATGCTGAAGCG 57.610 39.130 0.00 0.00 45.83 4.68
2986 3952 1.745653 GGTTCCTGCCATAGAACAAGC 59.254 52.381 9.24 0.00 43.37 4.01
3081 4048 9.905713 ACTTAAATAATGAGAATGCTCCTGTAA 57.094 29.630 0.00 0.00 40.55 2.41
3274 4242 5.053145 AGAGTCATATCAAACTTCGATGCC 58.947 41.667 0.00 0.00 0.00 4.40
3298 4266 6.605594 TGTCCAAGATTTTCCTGTTTACAAGT 59.394 34.615 0.00 0.00 0.00 3.16
3526 4504 9.691362 TTTGATTTTCAGTAAATGCCTAAACTC 57.309 29.630 0.00 0.00 36.59 3.01
3595 4581 5.103940 ACAGGATAATTCAGGCCACATAAGT 60.104 40.000 5.01 0.00 0.00 2.24
3617 4710 0.111061 ACAGATTCAGCAAGGGCACA 59.889 50.000 0.00 0.00 44.61 4.57
3855 5519 8.082852 TCGATAAGTAATAGAATGTTCAGGCTC 58.917 37.037 0.00 0.00 0.00 4.70
3941 5688 0.521735 CTTTCCTGTTTAGTGGGCGC 59.478 55.000 0.00 0.00 0.00 6.53
3987 5743 2.158957 CCCTGAGCGCTCATAGGTTTTA 60.159 50.000 38.11 14.07 39.13 1.52
4148 6490 6.090358 GCAACAGAATTGACCAAATGATTCAG 59.910 38.462 0.00 0.00 32.35 3.02
4228 6575 7.454260 AAGGGATCTTGAAAGTTAATGTCAC 57.546 36.000 0.00 0.00 0.00 3.67
4238 6585 5.718724 AAGAAGCAAAGGGATCTTGAAAG 57.281 39.130 0.00 0.00 32.75 2.62
4517 6867 8.734386 AGAAATTCTAACCTGATTGACATTCAC 58.266 33.333 0.00 0.00 0.00 3.18
4774 7255 1.980951 TTGCTAGCGCCGATGCTTTG 61.981 55.000 10.77 2.77 44.46 2.77
4834 7315 0.537653 AGCCTTCGCCTAGAGTTTCC 59.462 55.000 0.00 0.00 34.57 3.13
4989 7470 1.236628 GCCATCAGATGACATCAGGC 58.763 55.000 17.57 18.33 0.00 4.85
4996 7477 2.119801 AAGGTGTGCCATCAGATGAC 57.880 50.000 12.41 0.04 37.19 3.06
5032 7513 0.108186 TATCGCAGTTGTCAGGCCTG 60.108 55.000 27.87 27.87 0.00 4.85
5093 7581 4.873817 TCGTCGTCCAAGAATTTTCTACA 58.126 39.130 0.00 0.00 36.28 2.74
5110 7598 7.478520 AATCCCTTAGATTTTTGTATCGTCG 57.521 36.000 0.00 0.00 42.86 5.12
5215 7738 5.086104 ACTACTACACTAAACATGCCCAG 57.914 43.478 0.00 0.00 0.00 4.45
5264 7788 4.161942 CCATTTCCCAATGCAAGTATTCCA 59.838 41.667 0.00 0.00 38.88 3.53
5299 7823 4.937620 GGAGCACAACATCAGTAAGAATGA 59.062 41.667 0.00 0.00 0.00 2.57
5410 7941 4.853924 TTTGGAGAAAAGAACATCTGCC 57.146 40.909 0.00 0.00 33.55 4.85
5450 7981 5.814764 AGATTCAAATCTGCAGTCACATC 57.185 39.130 14.67 9.03 43.81 3.06
5500 8047 6.579865 AGATTACAGTTTCACCCTAATACGG 58.420 40.000 0.00 0.00 0.00 4.02
5607 8205 3.305398 AGCTAGAGAAGTTTGACCGTG 57.695 47.619 0.00 0.00 0.00 4.94
5608 8206 4.058817 CAAAGCTAGAGAAGTTTGACCGT 58.941 43.478 0.00 0.00 32.49 4.83
5781 8382 6.674861 TCTCTACTTAAAGGAGAGAGGAGAGA 59.325 42.308 12.00 9.49 40.58 3.10
5814 8415 5.276726 CGCATTGTAAGAGATGTCACATCAG 60.277 44.000 20.13 0.00 0.00 2.90
5826 8427 3.246226 GTGACATAGGCGCATTGTAAGAG 59.754 47.826 10.83 0.00 0.00 2.85
5835 8436 6.589907 CAGTATAATATTGTGACATAGGCGCA 59.410 38.462 10.83 0.00 0.00 6.09
5836 8437 6.590292 ACAGTATAATATTGTGACATAGGCGC 59.410 38.462 0.00 0.00 0.00 6.53
5857 8458 6.924111 ACATTTTTCACAGACTTTGAACAGT 58.076 32.000 3.50 0.00 32.65 3.55
5859 8460 9.698309 TTAAACATTTTTCACAGACTTTGAACA 57.302 25.926 3.50 0.00 32.65 3.18
5928 8531 3.286751 CCGTGTGGGCCAACAGTG 61.287 66.667 15.14 9.49 0.00 3.66
6006 8955 2.819595 CACGTTGGATGGCTCCCG 60.820 66.667 0.00 1.76 41.29 5.14
6021 8970 1.436336 CGGTCCGATACAGGTCCAC 59.564 63.158 4.91 0.00 39.06 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.