Multiple sequence alignment - TraesCS2D01G072800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G072800 chr2D 100.000 8877 0 0 1 8877 30490985 30482109 0.000000e+00 16393.0
1 TraesCS2D01G072800 chr2A 91.703 5315 270 61 3376 8609 32512216 32506992 0.000000e+00 7214.0
2 TraesCS2D01G072800 chr2A 91.775 1763 87 28 1372 3091 32514038 32512291 0.000000e+00 2399.0
3 TraesCS2D01G072800 chr2A 87.843 510 26 16 887 1379 32514609 32514119 4.650000e-157 566.0
4 TraesCS2D01G072800 chr2B 95.280 2521 79 16 3361 5858 49972500 49975003 0.000000e+00 3960.0
5 TraesCS2D01G072800 chr2B 94.453 1334 39 16 3361 4689 50152725 50151422 0.000000e+00 2021.0
6 TraesCS2D01G072800 chr2B 91.321 1279 89 12 6607 7868 50150298 50149025 0.000000e+00 1727.0
7 TraesCS2D01G072800 chr2B 91.009 1279 93 12 6607 7868 49975899 49977172 0.000000e+00 1705.0
8 TraesCS2D01G072800 chr2B 90.409 1126 62 19 2097 3184 50153810 50152693 0.000000e+00 1439.0
9 TraesCS2D01G072800 chr2B 90.769 1040 47 14 2190 3184 49971497 49972532 0.000000e+00 1343.0
10 TraesCS2D01G072800 chr2B 83.175 1474 127 61 442 1842 49970009 49971434 0.000000e+00 1236.0
11 TraesCS2D01G072800 chr2B 95.935 738 30 0 5860 6597 49975036 49975773 0.000000e+00 1197.0
12 TraesCS2D01G072800 chr2B 88.945 986 83 11 7895 8877 49977162 49978124 0.000000e+00 1194.0
13 TraesCS2D01G072800 chr2B 93.783 756 29 1 5860 6597 50151179 50150424 0.000000e+00 1120.0
14 TraesCS2D01G072800 chr2B 89.736 643 48 8 1208 1842 50154441 50153809 0.000000e+00 806.0
15 TraesCS2D01G072800 chr2B 93.991 233 8 2 948 1180 50154665 50154439 1.830000e-91 348.0
16 TraesCS2D01G072800 chr2B 91.089 202 12 3 7895 8094 50149035 50148838 1.470000e-67 268.0
17 TraesCS2D01G072800 chr3B 87.790 1466 117 27 6611 8043 651721381 651719945 0.000000e+00 1659.0
18 TraesCS2D01G072800 chr3B 85.422 1077 88 40 2039 3091 651727249 651726218 0.000000e+00 1055.0
19 TraesCS2D01G072800 chr3B 85.778 900 67 37 5011 5858 651723109 651722219 0.000000e+00 896.0
20 TraesCS2D01G072800 chr3B 85.948 733 67 17 5861 6587 651722185 651721483 0.000000e+00 750.0
21 TraesCS2D01G072800 chr3B 89.207 593 45 7 4395 4980 651724077 651723497 0.000000e+00 723.0
22 TraesCS2D01G072800 chr3B 92.308 507 34 5 3371 3875 651726128 651725625 0.000000e+00 715.0
23 TraesCS2D01G072800 chr3B 83.333 546 58 12 4410 4943 395986652 395986128 2.900000e-129 473.0
24 TraesCS2D01G072800 chr3B 85.894 397 27 13 3919 4301 651725506 651725125 6.460000e-106 396.0
25 TraesCS2D01G072800 chr3B 91.447 152 11 1 1000 1151 651728626 651728477 3.250000e-49 207.0
26 TraesCS2D01G072800 chr3A 86.927 1484 122 26 6599 8043 632616319 632614869 0.000000e+00 1600.0
27 TraesCS2D01G072800 chr3A 86.693 1007 76 39 2110 3091 632622329 632621356 0.000000e+00 1064.0
28 TraesCS2D01G072800 chr3A 86.475 732 76 14 5861 6587 632617124 632616411 0.000000e+00 782.0
29 TraesCS2D01G072800 chr3A 89.916 595 41 7 4395 4982 632619356 632618774 0.000000e+00 749.0
30 TraesCS2D01G072800 chr3A 92.688 506 30 6 3371 3875 632621267 632620768 0.000000e+00 723.0
31 TraesCS2D01G072800 chr3A 89.928 556 48 7 5310 5858 632617712 632617158 0.000000e+00 710.0
32 TraesCS2D01G072800 chr3A 82.735 585 66 16 4409 4979 400096537 400095974 1.040000e-133 488.0
33 TraesCS2D01G072800 chr3A 84.188 468 34 19 3919 4372 632620569 632620128 1.380000e-112 418.0
34 TraesCS2D01G072800 chr3A 86.364 330 22 11 5011 5325 632618197 632617876 1.100000e-88 339.0
35 TraesCS2D01G072800 chr3A 92.523 214 14 1 1001 1214 632623348 632623137 1.120000e-78 305.0
36 TraesCS2D01G072800 chr3D 87.378 1434 118 23 6647 8043 489546161 489544754 0.000000e+00 1587.0
37 TraesCS2D01G072800 chr3D 86.400 1000 82 32 2110 3091 489551696 489550733 0.000000e+00 1044.0
38 TraesCS2D01G072800 chr3D 86.000 900 64 38 5011 5858 489547913 489547024 0.000000e+00 907.0
39 TraesCS2D01G072800 chr3D 87.004 731 73 13 5861 6587 489546990 489546278 0.000000e+00 804.0
40 TraesCS2D01G072800 chr3D 90.252 595 39 7 4395 4982 489548880 489548298 0.000000e+00 760.0
41 TraesCS2D01G072800 chr3D 90.335 507 28 8 3371 3875 489550642 489550155 0.000000e+00 645.0
42 TraesCS2D01G072800 chr3D 84.402 468 33 21 3919 4372 489549956 489549515 2.960000e-114 424.0
43 TraesCS2D01G072800 chr3D 82.803 471 53 10 4515 4976 323244675 323245126 6.460000e-106 396.0
44 TraesCS2D01G072800 chr3D 93.023 215 13 1 1000 1214 489552699 489552487 6.690000e-81 313.0
45 TraesCS2D01G072800 chr5B 94.009 217 9 3 3171 3386 220640533 220640746 8.590000e-85 326.0
46 TraesCS2D01G072800 chr5B 95.500 200 7 2 3173 3371 147439622 147439820 1.440000e-82 318.0
47 TraesCS2D01G072800 chr5B 92.558 215 12 4 3171 3384 67959012 67958801 1.120000e-78 305.0
48 TraesCS2D01G072800 chr5B 78.972 214 40 3 1000 1210 610678225 610678436 3.340000e-29 141.0
49 TraesCS2D01G072800 chr4B 97.382 191 4 1 3180 3370 588430816 588431005 3.090000e-84 324.0
50 TraesCS2D01G072800 chr1B 96.447 197 5 2 3173 3369 225811782 225811976 3.090000e-84 324.0
51 TraesCS2D01G072800 chr1B 95.980 199 6 2 3170 3368 309518875 309519071 1.110000e-83 322.0
52 TraesCS2D01G072800 chr6A 93.810 210 10 3 3180 3387 70421119 70420911 6.690000e-81 313.0
53 TraesCS2D01G072800 chr6B 92.308 221 13 4 3145 3363 157786484 157786702 2.410000e-80 311.0
54 TraesCS2D01G072800 chr7B 92.308 221 11 5 3149 3368 413255469 413255254 8.660000e-80 309.0
55 TraesCS2D01G072800 chr5D 79.907 214 38 3 1000 1210 494458721 494458932 1.540000e-32 152.0
56 TraesCS2D01G072800 chr5D 96.970 33 0 1 365 396 502111226 502111194 4.000000e-03 54.7
57 TraesCS2D01G072800 chr5A 80.000 215 36 5 1000 1210 617347114 617347325 1.540000e-32 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G072800 chr2D 30482109 30490985 8876 True 16393.000000 16393 100.000000 1 8877 1 chr2D.!!$R1 8876
1 TraesCS2D01G072800 chr2A 32506992 32514609 7617 True 3393.000000 7214 90.440333 887 8609 3 chr2A.!!$R1 7722
2 TraesCS2D01G072800 chr2B 49970009 49978124 8115 False 1772.500000 3960 90.852167 442 8877 6 chr2B.!!$F1 8435
3 TraesCS2D01G072800 chr2B 50148838 50154665 5827 True 1104.142857 2021 92.111714 948 8094 7 chr2B.!!$R1 7146
4 TraesCS2D01G072800 chr3B 651719945 651728626 8681 True 800.125000 1659 87.974250 1000 8043 8 chr3B.!!$R2 7043
5 TraesCS2D01G072800 chr3B 395986128 395986652 524 True 473.000000 473 83.333000 4410 4943 1 chr3B.!!$R1 533
6 TraesCS2D01G072800 chr3A 632614869 632623348 8479 True 743.333333 1600 88.411333 1001 8043 9 chr3A.!!$R2 7042
7 TraesCS2D01G072800 chr3A 400095974 400096537 563 True 488.000000 488 82.735000 4409 4979 1 chr3A.!!$R1 570
8 TraesCS2D01G072800 chr3D 489544754 489552699 7945 True 810.500000 1587 88.099250 1000 8043 8 chr3D.!!$R1 7043

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 919 0.034337 TCTATTTGATACGGCCGGCC 59.966 55.000 36.69 36.69 0.00 6.13 F
928 973 0.456312 CAGGAAGTCGCACGAGGTAC 60.456 60.000 0.00 0.00 0.00 3.34 F
2247 2994 2.162408 GTGCTAAGATGAACCAGCAACC 59.838 50.000 0.00 0.00 44.99 3.77 F
2400 3150 0.242017 GCACTCACTGGTCAATTGCC 59.758 55.000 0.00 6.27 0.00 4.52 F
3216 4027 0.039165 GCAGTGGTAAAGCTGTTGCC 60.039 55.000 8.21 8.21 40.80 4.52 F
3243 4054 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69 F
4816 6966 0.038251 CTGCGTCTCTTACAGGCACA 60.038 55.000 0.00 0.00 0.00 4.57 F
5111 7818 1.063183 TTTGGGGCTTTGGGAATTGG 58.937 50.000 0.00 0.00 0.00 3.16 F
6279 9249 1.859080 GGAACAGTGTCTCGTGTGTTC 59.141 52.381 0.00 9.11 45.30 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2202 2949 0.692476 AGCCACACCATCTGTAAGCA 59.308 50.000 0.00 0.00 34.92 3.91 R
2400 3150 1.757118 TCTTCGGCCTGAACATAGGAG 59.243 52.381 0.00 0.00 40.42 3.69 R
3197 4008 0.039165 GGCAACAGCTTTACCACTGC 60.039 55.000 0.00 0.00 37.42 4.40 R
3233 4044 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94 R
5002 7286 0.534412 CCACAGCAGGGAGTAGTCTG 59.466 60.000 0.00 0.00 0.00 3.51 R
5319 8044 7.966246 AGTTTGCTTTTATTCATGAATGCAA 57.034 28.000 27.22 27.22 41.33 4.08 R
6503 9475 0.746204 GCTAACCTGGCAGAAGGCTC 60.746 60.000 17.94 0.00 41.46 4.70 R
6675 9765 2.082231 CTCATTCCTCCACTGCACAAG 58.918 52.381 0.00 0.00 0.00 3.16 R
8342 11497 0.460987 CTAGGGAAAGCTGAGTGGCG 60.461 60.000 0.00 0.00 37.29 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.479993 CCGGCCAGGAGCTCCTTG 62.480 72.222 33.33 29.36 46.09 3.61
21 22 3.393970 CGGCCAGGAGCTCCTTGA 61.394 66.667 32.62 0.00 46.09 3.02
22 23 2.270527 GGCCAGGAGCTCCTTGAC 59.729 66.667 32.62 28.26 46.09 3.18
23 24 2.297129 GGCCAGGAGCTCCTTGACT 61.297 63.158 32.62 11.78 46.09 3.41
24 25 0.978146 GGCCAGGAGCTCCTTGACTA 60.978 60.000 32.62 0.00 46.09 2.59
25 26 0.463620 GCCAGGAGCTCCTTGACTAG 59.536 60.000 32.62 20.65 46.09 2.57
26 27 0.463620 CCAGGAGCTCCTTGACTAGC 59.536 60.000 33.33 2.27 46.09 3.42
27 28 0.102120 CAGGAGCTCCTTGACTAGCG 59.898 60.000 33.33 15.13 46.09 4.26
28 29 1.227118 GGAGCTCCTTGACTAGCGC 60.227 63.158 26.25 0.00 43.63 5.92
29 30 1.671901 GGAGCTCCTTGACTAGCGCT 61.672 60.000 26.25 17.26 43.63 5.92
30 31 0.174617 GAGCTCCTTGACTAGCGCTT 59.825 55.000 18.68 0.00 43.63 4.68
31 32 0.174617 AGCTCCTTGACTAGCGCTTC 59.825 55.000 18.68 9.08 43.63 3.86
32 33 1.142778 GCTCCTTGACTAGCGCTTCG 61.143 60.000 18.68 10.39 0.00 3.79
33 34 0.171455 CTCCTTGACTAGCGCTTCGT 59.829 55.000 18.68 14.16 0.00 3.85
34 35 0.170561 TCCTTGACTAGCGCTTCGTC 59.829 55.000 18.68 22.50 0.00 4.20
35 36 0.109272 CCTTGACTAGCGCTTCGTCA 60.109 55.000 27.82 27.82 36.02 4.35
36 37 1.469940 CCTTGACTAGCGCTTCGTCAT 60.470 52.381 30.25 8.36 37.50 3.06
37 38 2.263077 CTTGACTAGCGCTTCGTCATT 58.737 47.619 30.25 5.05 37.50 2.57
38 39 1.629013 TGACTAGCGCTTCGTCATTG 58.371 50.000 27.82 4.63 33.15 2.82
39 40 0.924090 GACTAGCGCTTCGTCATTGG 59.076 55.000 25.48 3.22 0.00 3.16
40 41 1.084370 ACTAGCGCTTCGTCATTGGC 61.084 55.000 18.68 0.00 0.00 4.52
41 42 1.766143 CTAGCGCTTCGTCATTGGCC 61.766 60.000 18.68 0.00 0.00 5.36
42 43 2.238847 TAGCGCTTCGTCATTGGCCT 62.239 55.000 18.68 0.00 0.00 5.19
43 44 2.787249 CGCTTCGTCATTGGCCTG 59.213 61.111 3.32 0.00 0.00 4.85
44 45 1.741401 CGCTTCGTCATTGGCCTGA 60.741 57.895 3.32 0.00 0.00 3.86
45 46 1.091771 CGCTTCGTCATTGGCCTGAT 61.092 55.000 3.32 0.00 0.00 2.90
46 47 0.659957 GCTTCGTCATTGGCCTGATC 59.340 55.000 3.32 0.00 0.00 2.92
47 48 1.745141 GCTTCGTCATTGGCCTGATCT 60.745 52.381 3.32 0.00 0.00 2.75
48 49 1.938577 CTTCGTCATTGGCCTGATCTG 59.061 52.381 3.32 0.00 0.00 2.90
49 50 0.904649 TCGTCATTGGCCTGATCTGT 59.095 50.000 3.32 0.00 0.00 3.41
50 51 1.012086 CGTCATTGGCCTGATCTGTG 58.988 55.000 3.32 0.00 0.00 3.66
51 52 1.676916 CGTCATTGGCCTGATCTGTGT 60.677 52.381 3.32 0.00 0.00 3.72
52 53 1.741706 GTCATTGGCCTGATCTGTGTG 59.258 52.381 3.32 0.00 0.00 3.82
53 54 1.352017 TCATTGGCCTGATCTGTGTGT 59.648 47.619 3.32 0.00 0.00 3.72
54 55 1.471287 CATTGGCCTGATCTGTGTGTG 59.529 52.381 3.32 0.00 0.00 3.82
55 56 0.473755 TTGGCCTGATCTGTGTGTGT 59.526 50.000 3.32 0.00 0.00 3.72
56 57 0.250424 TGGCCTGATCTGTGTGTGTG 60.250 55.000 3.32 0.00 0.00 3.82
57 58 0.957395 GGCCTGATCTGTGTGTGTGG 60.957 60.000 0.00 0.00 0.00 4.17
58 59 0.035317 GCCTGATCTGTGTGTGTGGA 59.965 55.000 0.00 0.00 0.00 4.02
59 60 1.943046 GCCTGATCTGTGTGTGTGGAG 60.943 57.143 0.00 0.00 0.00 3.86
60 61 1.338484 CCTGATCTGTGTGTGTGGAGG 60.338 57.143 0.00 0.00 0.00 4.30
61 62 0.035317 TGATCTGTGTGTGTGGAGGC 59.965 55.000 0.00 0.00 0.00 4.70
62 63 0.674895 GATCTGTGTGTGTGGAGGCC 60.675 60.000 0.00 0.00 0.00 5.19
63 64 2.129555 ATCTGTGTGTGTGGAGGCCC 62.130 60.000 0.00 0.00 0.00 5.80
64 65 2.772191 TGTGTGTGTGGAGGCCCT 60.772 61.111 0.00 0.00 0.00 5.19
65 66 1.460497 TGTGTGTGTGGAGGCCCTA 60.460 57.895 0.00 0.00 0.00 3.53
66 67 0.840288 TGTGTGTGTGGAGGCCCTAT 60.840 55.000 0.00 0.00 0.00 2.57
67 68 0.107654 GTGTGTGTGGAGGCCCTATC 60.108 60.000 0.00 0.00 0.00 2.08
68 69 0.252696 TGTGTGTGGAGGCCCTATCT 60.253 55.000 0.00 0.00 0.00 1.98
69 70 0.912486 GTGTGTGGAGGCCCTATCTT 59.088 55.000 0.00 0.00 0.00 2.40
70 71 1.282157 GTGTGTGGAGGCCCTATCTTT 59.718 52.381 0.00 0.00 0.00 2.52
71 72 1.281867 TGTGTGGAGGCCCTATCTTTG 59.718 52.381 0.00 0.00 0.00 2.77
72 73 0.918983 TGTGGAGGCCCTATCTTTGG 59.081 55.000 0.00 0.00 0.00 3.28
97 98 7.741027 CATTGATGCCAAGACTTATGACTAT 57.259 36.000 0.00 0.00 35.48 2.12
98 99 8.837788 CATTGATGCCAAGACTTATGACTATA 57.162 34.615 0.00 0.00 35.48 1.31
99 100 8.715998 CATTGATGCCAAGACTTATGACTATAC 58.284 37.037 0.00 0.00 35.48 1.47
100 101 7.360113 TGATGCCAAGACTTATGACTATACA 57.640 36.000 0.00 0.00 0.00 2.29
101 102 7.791029 TGATGCCAAGACTTATGACTATACAA 58.209 34.615 0.00 0.00 0.00 2.41
102 103 8.264347 TGATGCCAAGACTTATGACTATACAAA 58.736 33.333 0.00 0.00 0.00 2.83
103 104 9.109393 GATGCCAAGACTTATGACTATACAAAA 57.891 33.333 0.00 0.00 0.00 2.44
104 105 8.856153 TGCCAAGACTTATGACTATACAAAAA 57.144 30.769 0.00 0.00 0.00 1.94
105 106 9.461312 TGCCAAGACTTATGACTATACAAAAAT 57.539 29.630 0.00 0.00 0.00 1.82
106 107 9.722056 GCCAAGACTTATGACTATACAAAAATG 57.278 33.333 0.00 0.00 0.00 2.32
138 139 9.979578 AATTTCAATAATGTGTGTAAGCTCAAA 57.020 25.926 0.00 0.00 0.00 2.69
139 140 9.979578 ATTTCAATAATGTGTGTAAGCTCAAAA 57.020 25.926 0.00 0.00 0.00 2.44
140 141 9.809096 TTTCAATAATGTGTGTAAGCTCAAAAA 57.191 25.926 0.00 0.00 0.00 1.94
164 165 9.733219 AAAAATGTTCATGCAAATTCGAAAAAT 57.267 22.222 0.00 0.00 0.00 1.82
165 166 8.716619 AAATGTTCATGCAAATTCGAAAAATG 57.283 26.923 0.00 2.80 0.00 2.32
166 167 6.841443 TGTTCATGCAAATTCGAAAAATGT 57.159 29.167 0.00 0.00 0.00 2.71
167 168 7.244166 TGTTCATGCAAATTCGAAAAATGTT 57.756 28.000 0.00 0.00 0.00 2.71
168 169 7.692088 TGTTCATGCAAATTCGAAAAATGTTT 58.308 26.923 0.00 0.00 0.00 2.83
169 170 7.639072 TGTTCATGCAAATTCGAAAAATGTTTG 59.361 29.630 14.07 14.07 33.98 2.93
177 178 9.224058 CAAATTCGAAAAATGTTTGCAATTTCT 57.776 25.926 16.37 0.00 34.81 2.52
178 179 9.786105 AAATTCGAAAAATGTTTGCAATTTCTT 57.214 22.222 16.37 5.67 34.81 2.52
255 256 9.545105 TCATGAATTTTAAAGAATGTTTGCACT 57.455 25.926 0.00 0.00 0.00 4.40
344 345 7.951287 TGTGAATGATATTGAAAATGTTTGCG 58.049 30.769 0.00 0.00 0.00 4.85
345 346 7.811713 TGTGAATGATATTGAAAATGTTTGCGA 59.188 29.630 0.00 0.00 0.00 5.10
346 347 8.646356 GTGAATGATATTGAAAATGTTTGCGAA 58.354 29.630 0.00 0.00 0.00 4.70
347 348 9.201127 TGAATGATATTGAAAATGTTTGCGAAA 57.799 25.926 0.00 0.00 0.00 3.46
495 496 6.862469 ATCCATGAATTTGAAATGTGTCCT 57.138 33.333 0.00 0.00 0.00 3.85
496 497 6.028146 TCCATGAATTTGAAATGTGTCCTG 57.972 37.500 0.00 0.00 0.00 3.86
502 503 4.764679 TTTGAAATGTGTCCTGGATTCG 57.235 40.909 0.00 0.00 0.00 3.34
504 505 4.014569 TGAAATGTGTCCTGGATTCGAA 57.985 40.909 0.00 0.00 0.00 3.71
507 508 5.048782 TGAAATGTGTCCTGGATTCGAAAAG 60.049 40.000 0.00 0.11 0.00 2.27
509 510 4.286297 TGTGTCCTGGATTCGAAAAGAT 57.714 40.909 0.00 0.00 0.00 2.40
510 511 4.002982 TGTGTCCTGGATTCGAAAAGATG 58.997 43.478 0.00 0.00 0.00 2.90
516 517 5.586243 TCCTGGATTCGAAAAGATGTTCATC 59.414 40.000 0.00 4.80 0.00 2.92
521 522 7.337689 TGGATTCGAAAAGATGTTCATCAATCT 59.662 33.333 14.05 0.00 0.00 2.40
522 523 8.830580 GGATTCGAAAAGATGTTCATCAATCTA 58.169 33.333 14.05 0.94 0.00 1.98
553 554 6.540914 TGTCCTCGAGTGTTAAAAGATGTTTT 59.459 34.615 12.31 5.82 39.31 2.43
554 555 6.851330 GTCCTCGAGTGTTAAAAGATGTTTTG 59.149 38.462 12.31 0.00 36.51 2.44
555 556 6.764085 TCCTCGAGTGTTAAAAGATGTTTTGA 59.236 34.615 12.31 0.00 36.51 2.69
559 560 9.445786 TCGAGTGTTAAAAGATGTTTTGAATTC 57.554 29.630 10.65 0.00 36.51 2.17
604 607 9.943163 AATTAACAAATTGCACAAAATGTAACC 57.057 25.926 0.00 0.00 35.56 2.85
605 608 6.992063 AACAAATTGCACAAAATGTAACCA 57.008 29.167 0.00 0.00 35.56 3.67
636 640 8.871862 TCACAAATTTCAAAAACTGTTGATGAG 58.128 29.630 0.00 0.00 37.36 2.90
679 692 7.716768 AAACGAAGAAGGAAAAACAAACAAA 57.283 28.000 0.00 0.00 0.00 2.83
680 693 7.716768 AACGAAGAAGGAAAAACAAACAAAA 57.283 28.000 0.00 0.00 0.00 2.44
681 694 7.716768 ACGAAGAAGGAAAAACAAACAAAAA 57.283 28.000 0.00 0.00 0.00 1.94
730 755 3.275617 AAAACTGGCAAAAGGAAACCC 57.724 42.857 0.00 0.00 0.00 4.11
738 763 4.080072 TGGCAAAAGGAAACCCAGAAAAAT 60.080 37.500 0.00 0.00 0.00 1.82
739 764 4.275689 GGCAAAAGGAAACCCAGAAAAATG 59.724 41.667 0.00 0.00 0.00 2.32
742 767 2.688477 AGGAAACCCAGAAAAATGCCA 58.312 42.857 0.00 0.00 0.00 4.92
747 772 1.970640 ACCCAGAAAAATGCCAGTTCC 59.029 47.619 0.00 0.00 0.00 3.62
754 779 3.323751 AAAATGCCAGTTCCATGAAGC 57.676 42.857 0.00 0.00 0.00 3.86
757 782 0.111061 TGCCAGTTCCATGAAGCTGT 59.889 50.000 0.00 0.00 0.00 4.40
758 783 1.350684 TGCCAGTTCCATGAAGCTGTA 59.649 47.619 0.00 0.00 0.00 2.74
759 784 2.025981 TGCCAGTTCCATGAAGCTGTAT 60.026 45.455 0.00 0.00 0.00 2.29
760 785 2.357009 GCCAGTTCCATGAAGCTGTATG 59.643 50.000 0.00 0.00 0.00 2.39
761 786 3.877559 CCAGTTCCATGAAGCTGTATGA 58.122 45.455 11.03 0.00 0.00 2.15
762 787 4.264253 CCAGTTCCATGAAGCTGTATGAA 58.736 43.478 11.03 0.00 0.00 2.57
763 788 4.701651 CCAGTTCCATGAAGCTGTATGAAA 59.298 41.667 11.03 0.00 0.00 2.69
764 789 5.392380 CCAGTTCCATGAAGCTGTATGAAAC 60.392 44.000 11.03 7.91 0.00 2.78
765 790 5.413833 CAGTTCCATGAAGCTGTATGAAACT 59.586 40.000 8.62 8.62 0.00 2.66
769 794 5.183713 TCCATGAAGCTGTATGAAACTTTGG 59.816 40.000 11.03 0.00 0.00 3.28
771 796 6.127535 CCATGAAGCTGTATGAAACTTTGGAT 60.128 38.462 11.03 0.00 0.00 3.41
773 798 6.003326 TGAAGCTGTATGAAACTTTGGATCA 58.997 36.000 0.00 0.00 0.00 2.92
774 799 6.660521 TGAAGCTGTATGAAACTTTGGATCAT 59.339 34.615 0.00 0.00 37.54 2.45
785 810 2.889170 TTGGATCATCCCAAAACCGA 57.111 45.000 0.00 0.00 42.75 4.69
800 825 3.790089 AACCGATGGGAAAGAGAAAGT 57.210 42.857 0.00 0.00 36.97 2.66
804 829 5.627135 ACCGATGGGAAAGAGAAAGTAAAA 58.373 37.500 0.00 0.00 36.97 1.52
805 830 6.066032 ACCGATGGGAAAGAGAAAGTAAAAA 58.934 36.000 0.00 0.00 36.97 1.94
838 878 0.468585 AAGGTCCCAAAACCGGTTCC 60.469 55.000 22.53 16.24 44.49 3.62
871 911 4.828387 ACGGACTCCCTCTCTATTTGATAC 59.172 45.833 0.00 0.00 0.00 2.24
872 912 4.083217 CGGACTCCCTCTCTATTTGATACG 60.083 50.000 0.00 0.00 0.00 3.06
873 913 4.218852 GGACTCCCTCTCTATTTGATACGG 59.781 50.000 0.00 0.00 0.00 4.02
874 914 3.574826 ACTCCCTCTCTATTTGATACGGC 59.425 47.826 0.00 0.00 0.00 5.68
875 915 2.897969 TCCCTCTCTATTTGATACGGCC 59.102 50.000 0.00 0.00 0.00 6.13
876 916 2.352814 CCCTCTCTATTTGATACGGCCG 60.353 54.545 26.86 26.86 0.00 6.13
877 917 2.352814 CCTCTCTATTTGATACGGCCGG 60.353 54.545 31.76 11.88 0.00 6.13
878 918 1.000506 TCTCTATTTGATACGGCCGGC 59.999 52.381 31.76 21.18 0.00 6.13
879 919 0.034337 TCTATTTGATACGGCCGGCC 59.966 55.000 36.69 36.69 0.00 6.13
880 920 0.953960 CTATTTGATACGGCCGGCCC 60.954 60.000 39.24 25.39 0.00 5.80
918 963 2.125912 CACCGCCTCAGGAAGTCG 60.126 66.667 0.00 0.00 34.73 4.18
922 967 2.811317 GCCTCAGGAAGTCGCACG 60.811 66.667 0.00 0.00 0.00 5.34
923 968 2.962569 CCTCAGGAAGTCGCACGA 59.037 61.111 0.00 0.00 0.00 4.35
924 969 1.153939 CCTCAGGAAGTCGCACGAG 60.154 63.158 0.00 0.00 0.00 4.18
925 970 1.153939 CTCAGGAAGTCGCACGAGG 60.154 63.158 0.00 0.00 0.00 4.63
926 971 1.867919 CTCAGGAAGTCGCACGAGGT 61.868 60.000 0.00 0.00 0.00 3.85
927 972 0.607217 TCAGGAAGTCGCACGAGGTA 60.607 55.000 0.00 0.00 0.00 3.08
928 973 0.456312 CAGGAAGTCGCACGAGGTAC 60.456 60.000 0.00 0.00 0.00 3.34
1127 1175 2.672996 CACCTCCAAGCCCAACCG 60.673 66.667 0.00 0.00 0.00 4.44
1128 1176 3.966543 ACCTCCAAGCCCAACCGG 61.967 66.667 0.00 0.00 0.00 5.28
1277 1872 7.333323 GCACCTGGGTCTTACTTAATTACTTA 58.667 38.462 0.00 0.00 0.00 2.24
1367 1979 9.134055 AGGAGGATGTTACTATAGTTCAACTAC 57.866 37.037 11.40 12.96 32.84 2.73
1428 2127 9.399403 GGTTCTTCTGTTTTTCATCAAACTATC 57.601 33.333 0.00 0.00 37.51 2.08
1459 2162 5.175673 GCAAAACTAATTTCTGGACAAGTGC 59.824 40.000 0.00 0.00 0.00 4.40
1543 2268 3.236632 TGCACACTGCTACTGTATCAG 57.763 47.619 15.13 15.13 45.31 2.90
1581 2306 7.585286 GGAAACATTTTATTTCCCGGTTTAC 57.415 36.000 0.00 0.00 46.42 2.01
1583 2308 7.543172 GGAAACATTTTATTTCCCGGTTTACTC 59.457 37.037 0.00 0.00 46.42 2.59
1633 2358 6.127054 TGGATCTTAGTTAGTTCCCACATCTG 60.127 42.308 4.25 0.00 40.62 2.90
1817 2542 4.747931 GCTTCTCTACATGGCCATTGGTAT 60.748 45.833 17.92 1.81 0.00 2.73
1829 2554 4.440525 GGCCATTGGTATGTGTTTCATCTG 60.441 45.833 4.26 0.00 37.91 2.90
1928 2664 6.913132 ACTGATTTCGTTCGTATACTGATCAG 59.087 38.462 21.37 21.37 37.31 2.90
1959 2695 7.934120 AGAAATAATTGGGAGTGCTCAGTATAC 59.066 37.037 0.00 0.00 0.00 1.47
1963 2699 5.854010 TTGGGAGTGCTCAGTATACTTAG 57.146 43.478 9.36 9.36 0.00 2.18
1967 2703 5.239963 GGGAGTGCTCAGTATACTTAGACTC 59.760 48.000 22.55 22.55 31.38 3.36
2003 2747 2.632028 TGCACAACACCTTGCCATAATT 59.368 40.909 0.00 0.00 38.00 1.40
2004 2748 3.829026 TGCACAACACCTTGCCATAATTA 59.171 39.130 0.00 0.00 38.00 1.40
2005 2749 4.281941 TGCACAACACCTTGCCATAATTAA 59.718 37.500 0.00 0.00 38.00 1.40
2006 2750 5.046735 TGCACAACACCTTGCCATAATTAAT 60.047 36.000 0.00 0.00 38.00 1.40
2050 2794 5.007724 CGCTCACATGACAGTCATACTACTA 59.992 44.000 15.98 0.00 34.28 1.82
2247 2994 2.162408 GTGCTAAGATGAACCAGCAACC 59.838 50.000 0.00 0.00 44.99 3.77
2328 3075 9.202273 GGAATCATCTTCTCATATTCTGTGTAC 57.798 37.037 0.00 0.00 0.00 2.90
2356 3103 8.583810 TTGTACAGCCGTATCTATTGTTATTC 57.416 34.615 0.00 0.00 0.00 1.75
2357 3104 7.149973 TGTACAGCCGTATCTATTGTTATTCC 58.850 38.462 0.00 0.00 0.00 3.01
2372 3119 2.363306 ATTCCTGGACAGTTGCAACA 57.637 45.000 30.11 9.36 0.00 3.33
2395 3145 2.636647 TGATTGCACTCACTGGTCAA 57.363 45.000 2.07 0.00 0.00 3.18
2400 3150 0.242017 GCACTCACTGGTCAATTGCC 59.758 55.000 0.00 6.27 0.00 4.52
2409 3163 3.010584 ACTGGTCAATTGCCTCCTATGTT 59.989 43.478 16.52 0.00 0.00 2.71
2517 3278 6.040166 GTGACTCTAATGTTATTACTCCCGGA 59.960 42.308 0.73 0.00 0.00 5.14
2861 3637 3.042871 ACTTAACGCAAATACCCGACA 57.957 42.857 0.00 0.00 0.00 4.35
2862 3638 3.602483 ACTTAACGCAAATACCCGACAT 58.398 40.909 0.00 0.00 0.00 3.06
2925 3701 7.274250 GCTTAATGTTCTATTTCTTGTTGGCTG 59.726 37.037 0.00 0.00 0.00 4.85
2936 3712 7.575414 TTTCTTGTTGGCTGTTTTATCTGTA 57.425 32.000 0.00 0.00 0.00 2.74
2937 3713 7.759489 TTCTTGTTGGCTGTTTTATCTGTAT 57.241 32.000 0.00 0.00 0.00 2.29
2939 3715 8.856153 TCTTGTTGGCTGTTTTATCTGTATTA 57.144 30.769 0.00 0.00 0.00 0.98
2940 3716 8.946085 TCTTGTTGGCTGTTTTATCTGTATTAG 58.054 33.333 0.00 0.00 0.00 1.73
2941 3717 8.630054 TTGTTGGCTGTTTTATCTGTATTAGT 57.370 30.769 0.00 0.00 0.00 2.24
2942 3718 8.263940 TGTTGGCTGTTTTATCTGTATTAGTC 57.736 34.615 0.00 0.00 0.00 2.59
2944 3720 8.604890 GTTGGCTGTTTTATCTGTATTAGTCTC 58.395 37.037 0.00 0.00 0.00 3.36
2945 3721 7.847096 TGGCTGTTTTATCTGTATTAGTCTCA 58.153 34.615 0.00 0.00 0.00 3.27
2946 3722 8.486210 TGGCTGTTTTATCTGTATTAGTCTCAT 58.514 33.333 0.00 0.00 0.00 2.90
2947 3723 9.982651 GGCTGTTTTATCTGTATTAGTCTCATA 57.017 33.333 0.00 0.00 0.00 2.15
3135 3945 9.804758 GTTGTCTATGTTGCTACTCTACTTTAT 57.195 33.333 0.00 0.00 0.00 1.40
3177 3988 9.788960 TTTCTTTCTTTTAGAGCACTCTTTTTC 57.211 29.630 5.33 0.00 40.93 2.29
3178 3989 7.931275 TCTTTCTTTTAGAGCACTCTTTTTCC 58.069 34.615 5.33 0.00 40.93 3.13
3179 3990 7.775561 TCTTTCTTTTAGAGCACTCTTTTTCCT 59.224 33.333 5.33 0.00 40.93 3.36
3180 3991 7.881775 TTCTTTTAGAGCACTCTTTTTCCTT 57.118 32.000 5.33 0.00 40.93 3.36
3181 3992 7.264373 TCTTTTAGAGCACTCTTTTTCCTTG 57.736 36.000 5.33 0.00 40.93 3.61
3182 3993 7.054124 TCTTTTAGAGCACTCTTTTTCCTTGA 58.946 34.615 5.33 0.00 40.93 3.02
3183 3994 7.556275 TCTTTTAGAGCACTCTTTTTCCTTGAA 59.444 33.333 5.33 0.00 40.93 2.69
3184 3995 6.867662 TTAGAGCACTCTTTTTCCTTGAAG 57.132 37.500 5.33 0.00 40.93 3.02
3185 3996 4.140536 AGAGCACTCTTTTTCCTTGAAGG 58.859 43.478 4.45 4.45 36.31 3.46
3186 3997 3.225940 AGCACTCTTTTTCCTTGAAGGG 58.774 45.455 11.99 0.00 35.59 3.95
3187 3998 2.297315 GCACTCTTTTTCCTTGAAGGGG 59.703 50.000 11.99 0.00 35.59 4.79
3188 3999 3.832527 CACTCTTTTTCCTTGAAGGGGA 58.167 45.455 11.99 0.00 35.59 4.81
3189 4000 3.823304 CACTCTTTTTCCTTGAAGGGGAG 59.177 47.826 11.99 12.74 35.59 4.30
3190 4001 2.822561 CTCTTTTTCCTTGAAGGGGAGC 59.177 50.000 11.99 0.00 35.59 4.70
3191 4002 1.895798 CTTTTTCCTTGAAGGGGAGCC 59.104 52.381 11.99 0.00 35.59 4.70
3192 4003 1.158007 TTTTCCTTGAAGGGGAGCCT 58.842 50.000 11.99 0.00 35.59 4.58
3193 4004 1.158007 TTTCCTTGAAGGGGAGCCTT 58.842 50.000 11.99 0.00 35.59 4.35
3194 4005 0.405585 TTCCTTGAAGGGGAGCCTTG 59.594 55.000 11.99 0.00 35.59 3.61
3195 4006 1.000396 CCTTGAAGGGGAGCCTTGG 60.000 63.158 2.50 0.00 0.00 3.61
3196 4007 1.680314 CTTGAAGGGGAGCCTTGGC 60.680 63.158 2.97 2.97 0.00 4.52
3197 4008 3.567579 TTGAAGGGGAGCCTTGGCG 62.568 63.158 5.95 0.00 0.00 5.69
3205 4016 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
3206 4017 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
3207 4018 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
3208 4019 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
3209 4020 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
3210 4021 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
3211 4022 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
3212 4023 1.966451 GGCGCAGTGGTAAAGCTGT 60.966 57.895 10.83 0.00 35.33 4.40
3213 4024 1.515521 GGCGCAGTGGTAAAGCTGTT 61.516 55.000 10.83 0.00 35.33 3.16
3214 4025 0.385974 GCGCAGTGGTAAAGCTGTTG 60.386 55.000 0.30 0.00 35.33 3.33
3215 4026 0.385974 CGCAGTGGTAAAGCTGTTGC 60.386 55.000 0.00 0.00 40.05 4.17
3216 4027 0.039165 GCAGTGGTAAAGCTGTTGCC 60.039 55.000 8.21 8.21 40.80 4.52
3217 4028 1.609208 CAGTGGTAAAGCTGTTGCCT 58.391 50.000 13.72 0.00 40.80 4.75
3218 4029 1.956477 CAGTGGTAAAGCTGTTGCCTT 59.044 47.619 13.72 0.00 40.80 4.35
3219 4030 2.362077 CAGTGGTAAAGCTGTTGCCTTT 59.638 45.455 13.72 0.00 40.80 3.11
3220 4031 2.362077 AGTGGTAAAGCTGTTGCCTTTG 59.638 45.455 13.72 0.00 40.80 2.77
3221 4032 2.100749 GTGGTAAAGCTGTTGCCTTTGT 59.899 45.455 13.72 0.00 40.80 2.83
3222 4033 2.100584 TGGTAAAGCTGTTGCCTTTGTG 59.899 45.455 13.72 0.00 40.80 3.33
3223 4034 2.360801 GGTAAAGCTGTTGCCTTTGTGA 59.639 45.455 7.98 0.00 40.80 3.58
3224 4035 2.584492 AAAGCTGTTGCCTTTGTGAC 57.416 45.000 0.00 0.00 40.80 3.67
3225 4036 0.746659 AAGCTGTTGCCTTTGTGACC 59.253 50.000 0.00 0.00 40.80 4.02
3226 4037 0.395586 AGCTGTTGCCTTTGTGACCA 60.396 50.000 0.00 0.00 40.80 4.02
3227 4038 0.675633 GCTGTTGCCTTTGTGACCAT 59.324 50.000 0.00 0.00 0.00 3.55
3228 4039 1.603678 GCTGTTGCCTTTGTGACCATG 60.604 52.381 0.00 0.00 0.00 3.66
3229 4040 1.955778 CTGTTGCCTTTGTGACCATGA 59.044 47.619 0.00 0.00 0.00 3.07
3230 4041 1.955778 TGTTGCCTTTGTGACCATGAG 59.044 47.619 0.00 0.00 0.00 2.90
3231 4042 1.270550 GTTGCCTTTGTGACCATGAGG 59.729 52.381 0.00 0.00 42.21 3.86
3241 4052 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
3242 4053 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
3243 4054 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
3244 4055 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
3245 4056 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
3246 4057 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
3247 4058 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
3248 4059 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
3249 4060 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
3250 4061 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
3251 4062 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
3252 4063 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
3253 4064 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
3254 4065 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
3255 4066 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
3269 4080 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
3270 4081 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
3271 4082 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
3272 4083 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
3273 4084 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
3274 4085 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
3275 4086 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
3276 4087 4.777896 ACAGCCTCTTACAGAAATGTAGGA 59.222 41.667 0.00 0.97 0.00 2.94
3277 4088 5.248477 ACAGCCTCTTACAGAAATGTAGGAA 59.752 40.000 2.49 0.00 31.51 3.36
3278 4089 6.173339 CAGCCTCTTACAGAAATGTAGGAAA 58.827 40.000 2.49 0.00 31.51 3.13
3279 4090 6.655003 CAGCCTCTTACAGAAATGTAGGAAAA 59.345 38.462 2.49 0.00 31.51 2.29
3280 4091 6.881602 AGCCTCTTACAGAAATGTAGGAAAAG 59.118 38.462 2.49 0.00 31.51 2.27
3281 4092 6.094186 GCCTCTTACAGAAATGTAGGAAAAGG 59.906 42.308 2.49 2.24 31.51 3.11
3282 4093 7.168905 CCTCTTACAGAAATGTAGGAAAAGGT 58.831 38.462 2.49 0.00 31.51 3.50
3283 4094 7.665974 CCTCTTACAGAAATGTAGGAAAAGGTT 59.334 37.037 2.49 0.00 31.51 3.50
3284 4095 8.391075 TCTTACAGAAATGTAGGAAAAGGTTG 57.609 34.615 0.00 0.00 29.32 3.77
3285 4096 5.453567 ACAGAAATGTAGGAAAAGGTTGC 57.546 39.130 0.00 0.00 0.00 4.17
3286 4097 4.023193 ACAGAAATGTAGGAAAAGGTTGCG 60.023 41.667 0.00 0.00 0.00 4.85
3287 4098 4.023193 CAGAAATGTAGGAAAAGGTTGCGT 60.023 41.667 0.00 0.00 0.00 5.24
3288 4099 5.180492 CAGAAATGTAGGAAAAGGTTGCGTA 59.820 40.000 0.00 0.00 0.00 4.42
3289 4100 5.180680 AGAAATGTAGGAAAAGGTTGCGTAC 59.819 40.000 0.00 0.00 0.00 3.67
3290 4101 3.756933 TGTAGGAAAAGGTTGCGTACT 57.243 42.857 0.00 0.00 0.00 2.73
3291 4102 4.870123 TGTAGGAAAAGGTTGCGTACTA 57.130 40.909 0.00 0.00 0.00 1.82
3292 4103 5.410355 TGTAGGAAAAGGTTGCGTACTAT 57.590 39.130 0.00 0.00 0.00 2.12
3293 4104 6.528537 TGTAGGAAAAGGTTGCGTACTATA 57.471 37.500 0.00 0.00 0.00 1.31
3294 4105 6.567050 TGTAGGAAAAGGTTGCGTACTATAG 58.433 40.000 0.00 0.00 0.00 1.31
3295 4106 5.927281 AGGAAAAGGTTGCGTACTATAGA 57.073 39.130 6.78 0.00 0.00 1.98
3296 4107 5.658468 AGGAAAAGGTTGCGTACTATAGAC 58.342 41.667 6.78 0.00 0.00 2.59
3297 4108 4.807834 GGAAAAGGTTGCGTACTATAGACC 59.192 45.833 6.78 2.23 0.00 3.85
3298 4109 4.397481 AAAGGTTGCGTACTATAGACCC 57.603 45.455 6.78 0.00 0.00 4.46
3299 4110 3.022557 AGGTTGCGTACTATAGACCCA 57.977 47.619 6.78 0.00 0.00 4.51
3300 4111 3.368248 AGGTTGCGTACTATAGACCCAA 58.632 45.455 6.78 3.02 0.00 4.12
3301 4112 3.770933 AGGTTGCGTACTATAGACCCAAA 59.229 43.478 6.78 0.00 0.00 3.28
3302 4113 4.117685 GGTTGCGTACTATAGACCCAAAG 58.882 47.826 6.78 0.00 0.00 2.77
3303 4114 4.382362 GGTTGCGTACTATAGACCCAAAGT 60.382 45.833 6.78 0.00 0.00 2.66
3304 4115 4.380841 TGCGTACTATAGACCCAAAGTG 57.619 45.455 6.78 0.00 0.00 3.16
3305 4116 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
3306 4117 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
3311 4122 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3312 4123 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3313 4124 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3314 4125 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3315 4126 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3316 4127 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3317 4128 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3318 4129 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3319 4130 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
3326 4137 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
3353 4164 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
3354 4165 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
3355 4166 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
3356 4167 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
3357 4168 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
3358 4169 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
3364 4175 2.917227 CACCGGGCTGCCCTTTTT 60.917 61.111 33.39 13.23 42.67 1.94
3578 4389 5.163447 TGAGAAGGGTGATGAAATAGTACCG 60.163 44.000 0.00 0.00 32.22 4.02
3749 4560 5.528320 AGAGTACCTAGAATACGAGTTCAGC 59.472 44.000 0.00 0.00 0.00 4.26
4134 5117 8.646004 TGTTTTATTTGAAATGAACCTCATGGA 58.354 29.630 0.00 0.00 37.15 3.41
4142 5125 8.771521 TGAAATGAACCTCATGGATATTTCAT 57.228 30.769 0.00 8.86 40.59 2.57
4143 5126 8.853126 TGAAATGAACCTCATGGATATTTCATC 58.147 33.333 0.00 4.91 40.59 2.92
4144 5127 9.075678 GAAATGAACCTCATGGATATTTCATCT 57.924 33.333 0.00 0.00 37.15 2.90
4420 6568 2.009774 AGTGTGTGCTTTCACTGACAC 58.990 47.619 9.58 9.58 44.17 3.67
4550 6698 1.062002 CTTATTGTACCTGTTGCGCGG 59.938 52.381 8.83 0.00 0.00 6.46
4644 6793 2.047179 AAAAGGGCGGTCGAGCTC 60.047 61.111 13.48 2.73 38.04 4.09
4816 6966 0.038251 CTGCGTCTCTTACAGGCACA 60.038 55.000 0.00 0.00 0.00 4.57
5111 7818 1.063183 TTTGGGGCTTTGGGAATTGG 58.937 50.000 0.00 0.00 0.00 3.16
5120 7827 3.056821 GCTTTGGGAATTGGAAGTACACC 60.057 47.826 0.00 0.00 0.00 4.16
5121 7828 3.885976 TTGGGAATTGGAAGTACACCA 57.114 42.857 7.56 7.56 35.47 4.17
5125 7832 4.351407 TGGGAATTGGAAGTACACCACTAA 59.649 41.667 10.60 0.00 36.04 2.24
5344 8251 9.656040 ATTGCATTCATGAATAAAAGCAAACTA 57.344 25.926 31.18 18.64 38.54 2.24
5367 8274 9.599866 ACTACATTCTTGATTCATTATCGACAA 57.400 29.630 0.00 0.00 35.94 3.18
5374 8281 8.204160 TCTTGATTCATTATCGACAACATACCT 58.796 33.333 0.00 0.00 35.94 3.08
5375 8282 7.946655 TGATTCATTATCGACAACATACCTC 57.053 36.000 0.00 0.00 35.94 3.85
5388 8295 5.417580 ACAACATACCTCGTTGCCATTATTT 59.582 36.000 3.07 0.00 46.14 1.40
5602 8518 3.369546 GGCCAATTATATGCCACACAC 57.630 47.619 0.00 0.00 44.70 3.82
5605 8521 4.582656 GGCCAATTATATGCCACACACTTA 59.417 41.667 0.00 0.00 44.70 2.24
5846 8762 7.224753 CGGCGAGGTGAATATGCTAATATTATT 59.775 37.037 0.00 0.00 38.77 1.40
5951 8903 8.557029 AGTTCGTCGATAATTGATTTTTATCCC 58.443 33.333 0.00 0.00 34.13 3.85
6103 9073 4.321527 GGAAAGAGATTTTCTTGGCAGGTG 60.322 45.833 0.00 0.00 45.41 4.00
6236 9206 4.518211 AGGTTGCTGTCTGAGATTGAAAAG 59.482 41.667 0.00 0.00 0.00 2.27
6279 9249 1.859080 GGAACAGTGTCTCGTGTGTTC 59.141 52.381 0.00 9.11 45.30 3.18
6302 9272 9.801873 GTTCTTGTTTTTATGGCATACATGTAT 57.198 29.630 12.75 12.75 40.82 2.29
6394 9366 6.520792 AGACGAAACAGTACAATGTACAAC 57.479 37.500 23.52 9.82 31.70 3.32
6446 9418 3.685272 TGCGCCTTATATCTACTCTCTCG 59.315 47.826 4.18 0.00 0.00 4.04
6450 9422 4.459685 GCCTTATATCTACTCTCTCGGCAA 59.540 45.833 0.00 0.00 34.16 4.52
6503 9475 5.734498 CGAAATGAAATTAAAGAGCCACTCG 59.266 40.000 0.00 0.00 33.67 4.18
6546 9518 7.015779 AGCTAACCCTACTAGGATTCTTGATTC 59.984 40.741 3.36 0.00 37.67 2.52
6570 9544 8.621532 TCACTGCAGATAGTATTTTCTTGTTT 57.378 30.769 23.35 0.00 0.00 2.83
6675 9765 7.225538 TCACTTAATTAGCTGCTCTTGCTTATC 59.774 37.037 4.91 0.00 41.46 1.75
6796 9886 5.316167 TGGACAATCAAGTGATGTAAGCTT 58.684 37.500 3.48 3.48 34.49 3.74
6889 9982 3.829886 TGCTCAATTTACAAGCTTCCG 57.170 42.857 0.00 0.00 36.96 4.30
6898 9991 0.250513 ACAAGCTTCCGGATCCTCAC 59.749 55.000 4.15 0.00 0.00 3.51
6967 10060 8.514330 AGGTACAGAACTGTTGTTTATTTTCA 57.486 30.769 12.66 0.00 41.83 2.69
7002 10095 5.667626 ACATGAGTATTACCATTCCACTCCT 59.332 40.000 0.00 0.00 35.78 3.69
7003 10096 6.844388 ACATGAGTATTACCATTCCACTCCTA 59.156 38.462 0.00 0.00 35.78 2.94
7122 10221 2.614987 GCAGGAGGCCTCATGATGATAC 60.615 54.545 43.20 24.50 43.36 2.24
7249 10357 0.899717 GGCAAAACCCTGCAGGATCA 60.900 55.000 34.91 0.00 44.52 2.92
7289 10397 4.101448 GGGAGGCTGCACACCGAT 62.101 66.667 8.68 0.00 0.00 4.18
7316 10424 3.057666 TGCAAACAGCTTGAATATTCGCA 60.058 39.130 15.07 10.24 45.94 5.10
7319 10427 2.358957 ACAGCTTGAATATTCGCAGCA 58.641 42.857 28.26 6.08 38.12 4.41
7334 10442 2.438434 GCAGCGGGCAATACACCT 60.438 61.111 0.00 0.00 43.97 4.00
7411 10522 3.432445 ATGGATGGAGCAGCCTGCC 62.432 63.158 14.25 4.78 46.52 4.85
7495 10612 0.543277 TGCCATCAGGATCAGGTCAC 59.457 55.000 0.00 0.00 36.89 3.67
7507 10624 4.202264 GGATCAGGTCACCAGTATACAAGG 60.202 50.000 5.50 9.09 0.00 3.61
7626 10743 5.391203 GCAGCAACGCATATTCATCATATCA 60.391 40.000 0.00 0.00 0.00 2.15
7682 10799 2.421314 CGCCATCGTATGCTGGGA 59.579 61.111 6.94 0.00 31.83 4.37
7729 10861 2.974148 CGACAGTGGCAGCAGCAA 60.974 61.111 2.65 0.00 44.61 3.91
7788 10920 4.326826 CTTCCTGCAAGACCTAATTCACA 58.673 43.478 0.00 0.00 34.07 3.58
7801 10933 1.568612 ATTCACAACCGCAGCAGTCG 61.569 55.000 0.00 0.00 0.00 4.18
7806 10938 4.731612 ACCGCAGCAGTCGCAGAG 62.732 66.667 0.00 0.00 42.27 3.35
7828 10960 3.413327 CTCCTACGGCAGCTTAGATAGA 58.587 50.000 0.00 0.00 0.00 1.98
7873 11019 2.628178 CCAGGGTTTTCCTCTTTGGTTC 59.372 50.000 0.00 0.00 46.12 3.62
7874 11020 3.566351 CAGGGTTTTCCTCTTTGGTTCT 58.434 45.455 0.00 0.00 46.12 3.01
7875 11021 4.447180 CCAGGGTTTTCCTCTTTGGTTCTA 60.447 45.833 0.00 0.00 46.12 2.10
7876 11022 4.762251 CAGGGTTTTCCTCTTTGGTTCTAG 59.238 45.833 0.00 0.00 46.12 2.43
7897 11047 1.963515 CTAGCCCAGGTTTTGCTGTTT 59.036 47.619 0.00 0.00 36.57 2.83
7970 11121 2.290367 CGTTTGCAAAGTCTGGTGATCA 59.710 45.455 13.26 0.00 0.00 2.92
7983 11134 3.349927 TGGTGATCATCAAGCTTCTTGG 58.650 45.455 6.09 0.00 0.00 3.61
7995 11146 5.880332 TCAAGCTTCTTGGTCATGGTATAAC 59.120 40.000 0.00 0.00 0.00 1.89
8074 11227 4.118168 AGAAGAAATTTGGCTCCTTCCA 57.882 40.909 11.11 0.00 35.18 3.53
8112 11265 2.159240 GGCGGTTTCCTCATCAAAATCC 60.159 50.000 0.00 0.00 0.00 3.01
8143 11297 0.395862 TGGCCCAAACAGGTTTTCGA 60.396 50.000 0.00 0.00 34.66 3.71
8148 11302 3.004944 GCCCAAACAGGTTTTCGATTACA 59.995 43.478 0.00 0.00 34.66 2.41
8156 11310 5.643777 ACAGGTTTTCGATTACATTCCTCAG 59.356 40.000 0.00 0.00 0.00 3.35
8195 11350 2.967201 TCAAACCCCTCGTCTACAAAGA 59.033 45.455 0.00 0.00 0.00 2.52
8197 11352 3.611766 AACCCCTCGTCTACAAAGATG 57.388 47.619 0.00 0.00 39.72 2.90
8208 11363 8.922058 TCGTCTACAAAGATGTTATAGGTTTC 57.078 34.615 0.00 0.00 41.05 2.78
8212 11367 9.871238 TCTACAAAGATGTTATAGGTTTCTGTC 57.129 33.333 0.00 0.00 41.05 3.51
8215 11370 9.003658 ACAAAGATGTTATAGGTTTCTGTCTTG 57.996 33.333 0.00 0.00 35.91 3.02
8224 11379 0.468226 TTTCTGTCTTGGCACGGTCT 59.532 50.000 0.00 0.00 0.00 3.85
8231 11386 1.354337 CTTGGCACGGTCTGACATCG 61.354 60.000 10.38 7.48 37.91 3.84
8234 11389 1.352156 GGCACGGTCTGACATCGAAC 61.352 60.000 10.38 3.22 0.00 3.95
8255 11410 7.437267 TCGAACGTCTGAATTAATCCCTTATTC 59.563 37.037 0.00 0.00 0.00 1.75
8282 11437 5.312079 AGGTCAAGGCAGCTGATAATATTC 58.688 41.667 20.43 0.00 0.00 1.75
8342 11497 5.003804 TCTAAGTTCCCAGTGAAATGCTTC 58.996 41.667 0.00 0.00 33.94 3.86
8356 11511 1.230635 TGCTTCGCCACTCAGCTTTC 61.231 55.000 0.00 0.00 34.42 2.62
8360 11515 0.902984 TCGCCACTCAGCTTTCCCTA 60.903 55.000 0.00 0.00 0.00 3.53
8369 11524 1.378646 GCTTTCCCTAGTGGCCCAC 60.379 63.158 5.50 5.50 34.10 4.61
8374 11529 4.778143 CCTAGTGGCCCACCGTGC 62.778 72.222 11.06 0.00 39.70 5.34
8459 11614 6.983307 CCCTCCATGAGATTATTCACGATATC 59.017 42.308 0.00 0.00 0.00 1.63
8497 11653 2.920524 AGCAATCATCCTCAAGCTCAG 58.079 47.619 0.00 0.00 0.00 3.35
8510 11666 3.999001 TCAAGCTCAGCTTCACAACTATG 59.001 43.478 9.64 0.00 46.77 2.23
8535 11691 5.344128 CACTCAAATGCACTTTACATTCTGC 59.656 40.000 0.00 0.00 36.74 4.26
8559 11715 9.821240 TGCAATGGGTGGTAGAAAAATATATAT 57.179 29.630 0.00 0.00 0.00 0.86
8642 11798 6.751514 AATTGCTATCGACAACCAATGTTA 57.248 33.333 0.00 0.00 44.12 2.41
8648 11804 7.148540 TGCTATCGACAACCAATGTTAACTAAC 60.149 37.037 7.22 0.00 44.12 2.34
8653 11809 6.139048 ACAACCAATGTTAACTAACGCTTT 57.861 33.333 7.22 0.00 40.06 3.51
8691 11847 5.783111 ACTACAAAACTCAAATTGATGGGC 58.217 37.500 0.00 0.00 0.00 5.36
8703 11859 6.608405 TCAAATTGATGGGCAGTTATCTTGAT 59.392 34.615 0.00 0.00 0.00 2.57
8704 11860 6.401047 AATTGATGGGCAGTTATCTTGATG 57.599 37.500 0.00 0.00 0.00 3.07
8724 11880 8.969260 TTGATGCATCTGACTTAGTTATTGAT 57.031 30.769 26.32 0.00 0.00 2.57
8796 11952 2.028420 TCCTTCAGGACATTGATGCG 57.972 50.000 0.00 0.00 39.78 4.73
8818 11974 5.449041 GCGGTCTTCAATATGATGCTTTGAA 60.449 40.000 0.00 0.00 37.11 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.227118 GCGCTAGTCAAGGAGCTCC 60.227 63.158 26.22 26.22 36.50 4.70
11 12 0.174617 AAGCGCTAGTCAAGGAGCTC 59.825 55.000 12.05 4.71 37.60 4.09
12 13 0.174617 GAAGCGCTAGTCAAGGAGCT 59.825 55.000 12.05 0.00 40.05 4.09
13 14 1.142778 CGAAGCGCTAGTCAAGGAGC 61.143 60.000 12.05 0.00 35.24 4.70
14 15 0.171455 ACGAAGCGCTAGTCAAGGAG 59.829 55.000 12.05 0.00 0.00 3.69
15 16 0.170561 GACGAAGCGCTAGTCAAGGA 59.829 55.000 29.49 0.00 35.19 3.36
16 17 0.109272 TGACGAAGCGCTAGTCAAGG 60.109 55.000 32.72 11.94 41.30 3.61
17 18 1.914634 ATGACGAAGCGCTAGTCAAG 58.085 50.000 35.80 18.04 46.22 3.02
18 19 1.992667 CAATGACGAAGCGCTAGTCAA 59.007 47.619 35.80 25.04 46.22 3.18
19 20 1.629013 CAATGACGAAGCGCTAGTCA 58.371 50.000 34.94 34.94 46.99 3.41
20 21 0.924090 CCAATGACGAAGCGCTAGTC 59.076 55.000 28.44 28.44 35.61 2.59
21 22 1.084370 GCCAATGACGAAGCGCTAGT 61.084 55.000 12.05 15.03 0.00 2.57
22 23 1.638467 GCCAATGACGAAGCGCTAG 59.362 57.895 12.05 11.25 0.00 3.42
23 24 1.813753 GGCCAATGACGAAGCGCTA 60.814 57.895 12.05 0.00 0.00 4.26
24 25 3.127533 GGCCAATGACGAAGCGCT 61.128 61.111 2.64 2.64 0.00 5.92
25 26 3.127533 AGGCCAATGACGAAGCGC 61.128 61.111 5.01 0.00 0.00 5.92
26 27 1.091771 ATCAGGCCAATGACGAAGCG 61.092 55.000 5.01 0.00 30.46 4.68
27 28 0.659957 GATCAGGCCAATGACGAAGC 59.340 55.000 5.01 0.00 30.46 3.86
28 29 1.938577 CAGATCAGGCCAATGACGAAG 59.061 52.381 5.01 0.00 30.46 3.79
29 30 1.278985 ACAGATCAGGCCAATGACGAA 59.721 47.619 5.01 0.00 30.46 3.85
30 31 0.904649 ACAGATCAGGCCAATGACGA 59.095 50.000 5.01 0.00 30.46 4.20
31 32 1.012086 CACAGATCAGGCCAATGACG 58.988 55.000 5.01 0.00 30.46 4.35
32 33 1.741706 CACACAGATCAGGCCAATGAC 59.258 52.381 5.01 0.00 30.46 3.06
33 34 1.352017 ACACACAGATCAGGCCAATGA 59.648 47.619 5.01 0.00 0.00 2.57
34 35 1.471287 CACACACAGATCAGGCCAATG 59.529 52.381 5.01 0.00 0.00 2.82
35 36 1.074405 ACACACACAGATCAGGCCAAT 59.926 47.619 5.01 0.00 0.00 3.16
36 37 0.473755 ACACACACAGATCAGGCCAA 59.526 50.000 5.01 0.00 0.00 4.52
37 38 0.250424 CACACACACAGATCAGGCCA 60.250 55.000 5.01 0.00 0.00 5.36
38 39 0.957395 CCACACACACAGATCAGGCC 60.957 60.000 0.00 0.00 0.00 5.19
39 40 0.035317 TCCACACACACAGATCAGGC 59.965 55.000 0.00 0.00 0.00 4.85
40 41 1.338484 CCTCCACACACACAGATCAGG 60.338 57.143 0.00 0.00 0.00 3.86
41 42 1.943046 GCCTCCACACACACAGATCAG 60.943 57.143 0.00 0.00 0.00 2.90
42 43 0.035317 GCCTCCACACACACAGATCA 59.965 55.000 0.00 0.00 0.00 2.92
43 44 0.674895 GGCCTCCACACACACAGATC 60.675 60.000 0.00 0.00 0.00 2.75
44 45 1.376466 GGCCTCCACACACACAGAT 59.624 57.895 0.00 0.00 0.00 2.90
45 46 2.818169 GGGCCTCCACACACACAGA 61.818 63.158 0.84 0.00 0.00 3.41
46 47 1.480212 TAGGGCCTCCACACACACAG 61.480 60.000 10.74 0.00 34.83 3.66
47 48 0.840288 ATAGGGCCTCCACACACACA 60.840 55.000 10.74 0.00 34.83 3.72
48 49 0.107654 GATAGGGCCTCCACACACAC 60.108 60.000 10.74 0.00 34.83 3.82
49 50 0.252696 AGATAGGGCCTCCACACACA 60.253 55.000 10.74 0.00 34.83 3.72
50 51 0.912486 AAGATAGGGCCTCCACACAC 59.088 55.000 10.74 0.00 34.83 3.82
51 52 1.281867 CAAAGATAGGGCCTCCACACA 59.718 52.381 10.74 0.00 34.83 3.72
52 53 1.408822 CCAAAGATAGGGCCTCCACAC 60.409 57.143 10.74 0.00 34.83 3.82
53 54 0.918983 CCAAAGATAGGGCCTCCACA 59.081 55.000 10.74 0.00 34.83 4.17
54 55 0.466372 GCCAAAGATAGGGCCTCCAC 60.466 60.000 10.74 2.42 44.53 4.02
55 56 1.922821 GCCAAAGATAGGGCCTCCA 59.077 57.895 10.74 0.00 44.53 3.86
56 57 4.909678 GCCAAAGATAGGGCCTCC 57.090 61.111 10.74 2.96 44.53 4.30
73 74 7.741027 ATAGTCATAAGTCTTGGCATCAATG 57.259 36.000 0.00 0.00 31.75 2.82
74 75 8.432013 TGTATAGTCATAAGTCTTGGCATCAAT 58.568 33.333 0.00 0.00 31.75 2.57
75 76 7.791029 TGTATAGTCATAAGTCTTGGCATCAA 58.209 34.615 0.00 0.00 0.00 2.57
76 77 7.360113 TGTATAGTCATAAGTCTTGGCATCA 57.640 36.000 0.00 0.00 0.00 3.07
77 78 8.662781 TTTGTATAGTCATAAGTCTTGGCATC 57.337 34.615 0.00 0.00 0.00 3.91
78 79 9.461312 TTTTTGTATAGTCATAAGTCTTGGCAT 57.539 29.630 0.00 0.00 0.00 4.40
79 80 8.856153 TTTTTGTATAGTCATAAGTCTTGGCA 57.144 30.769 0.00 0.00 0.00 4.92
80 81 9.722056 CATTTTTGTATAGTCATAAGTCTTGGC 57.278 33.333 0.00 0.00 0.00 4.52
112 113 9.979578 TTTGAGCTTACACACATTATTGAAATT 57.020 25.926 0.00 0.00 0.00 1.82
113 114 9.979578 TTTTGAGCTTACACACATTATTGAAAT 57.020 25.926 0.00 0.00 0.00 2.17
114 115 9.809096 TTTTTGAGCTTACACACATTATTGAAA 57.191 25.926 0.00 0.00 0.00 2.69
138 139 9.733219 ATTTTTCGAATTTGCATGAACATTTTT 57.267 22.222 0.00 0.00 0.00 1.94
139 140 9.171701 CATTTTTCGAATTTGCATGAACATTTT 57.828 25.926 0.00 0.00 0.00 1.82
140 141 8.344098 ACATTTTTCGAATTTGCATGAACATTT 58.656 25.926 0.00 0.00 0.00 2.32
141 142 7.863666 ACATTTTTCGAATTTGCATGAACATT 58.136 26.923 0.00 0.00 0.00 2.71
142 143 7.424227 ACATTTTTCGAATTTGCATGAACAT 57.576 28.000 0.00 0.00 0.00 2.71
143 144 6.841443 ACATTTTTCGAATTTGCATGAACA 57.159 29.167 0.00 0.00 0.00 3.18
144 145 7.973789 CAAACATTTTTCGAATTTGCATGAAC 58.026 30.769 0.00 0.00 0.00 3.18
151 152 9.224058 AGAAATTGCAAACATTTTTCGAATTTG 57.776 25.926 14.07 14.07 35.23 2.32
152 153 9.786105 AAGAAATTGCAAACATTTTTCGAATTT 57.214 22.222 1.71 0.00 35.23 1.82
229 230 9.545105 AGTGCAAACATTCTTTAAAATTCATGA 57.455 25.926 0.00 0.00 0.00 3.07
318 319 8.597227 CGCAAACATTTTCAATATCATTCACAT 58.403 29.630 0.00 0.00 0.00 3.21
319 320 7.811713 TCGCAAACATTTTCAATATCATTCACA 59.188 29.630 0.00 0.00 0.00 3.58
320 321 8.172159 TCGCAAACATTTTCAATATCATTCAC 57.828 30.769 0.00 0.00 0.00 3.18
321 322 8.754230 TTCGCAAACATTTTCAATATCATTCA 57.246 26.923 0.00 0.00 0.00 2.57
478 479 5.801947 CGAATCCAGGACACATTTCAAATTC 59.198 40.000 0.00 0.00 0.00 2.17
481 482 4.393834 TCGAATCCAGGACACATTTCAAA 58.606 39.130 0.00 0.00 0.00 2.69
484 485 5.181245 TCTTTTCGAATCCAGGACACATTTC 59.819 40.000 0.00 0.00 0.00 2.17
488 489 3.762407 TCTTTTCGAATCCAGGACACA 57.238 42.857 0.00 0.00 0.00 3.72
493 494 5.355071 TGATGAACATCTTTTCGAATCCAGG 59.645 40.000 14.50 0.00 38.60 4.45
495 496 6.816134 TTGATGAACATCTTTTCGAATCCA 57.184 33.333 14.50 0.00 38.60 3.41
496 497 7.701445 AGATTGATGAACATCTTTTCGAATCC 58.299 34.615 14.50 2.56 38.60 3.01
527 528 5.794894 ACATCTTTTAACACTCGAGGACAT 58.205 37.500 18.41 2.44 0.00 3.06
530 531 6.764085 TCAAAACATCTTTTAACACTCGAGGA 59.236 34.615 18.41 1.54 0.00 3.71
531 532 6.954944 TCAAAACATCTTTTAACACTCGAGG 58.045 36.000 18.41 8.36 0.00 4.63
579 580 9.113838 TGGTTACATTTTGTGCAATTTGTTAAT 57.886 25.926 0.00 0.00 0.00 1.40
580 581 8.492673 TGGTTACATTTTGTGCAATTTGTTAA 57.507 26.923 0.00 0.00 0.00 2.01
581 582 8.668510 ATGGTTACATTTTGTGCAATTTGTTA 57.331 26.923 0.00 0.00 32.00 2.41
602 605 9.623350 CAGTTTTTGAAATTTGTGAAAAATGGT 57.377 25.926 15.59 5.38 31.80 3.55
603 606 9.623350 ACAGTTTTTGAAATTTGTGAAAAATGG 57.377 25.926 21.52 15.25 31.80 3.16
710 723 2.573915 TGGGTTTCCTTTTGCCAGTTTT 59.426 40.909 0.00 0.00 0.00 2.43
714 727 1.703411 TCTGGGTTTCCTTTTGCCAG 58.297 50.000 0.00 0.00 0.00 4.85
715 728 2.166907 TTCTGGGTTTCCTTTTGCCA 57.833 45.000 0.00 0.00 0.00 4.92
723 748 2.368548 ACTGGCATTTTTCTGGGTTTCC 59.631 45.455 0.00 0.00 0.00 3.13
730 755 4.524316 TCATGGAACTGGCATTTTTCTG 57.476 40.909 0.00 0.00 0.00 3.02
738 763 0.111061 ACAGCTTCATGGAACTGGCA 59.889 50.000 9.23 0.00 34.40 4.92
739 764 2.113860 TACAGCTTCATGGAACTGGC 57.886 50.000 9.23 0.00 34.40 4.85
742 767 5.564550 AGTTTCATACAGCTTCATGGAACT 58.435 37.500 19.11 19.11 43.24 3.01
747 772 6.258230 TCCAAAGTTTCATACAGCTTCATG 57.742 37.500 0.00 0.00 0.00 3.07
754 779 5.887598 TGGGATGATCCAAAGTTTCATACAG 59.112 40.000 14.36 0.00 38.64 2.74
804 829 3.891977 GGGACCTTTCAGAGCTTCTTTTT 59.108 43.478 0.00 0.00 0.00 1.94
805 830 3.117512 TGGGACCTTTCAGAGCTTCTTTT 60.118 43.478 0.00 0.00 0.00 2.27
806 831 2.443255 TGGGACCTTTCAGAGCTTCTTT 59.557 45.455 0.00 0.00 0.00 2.52
809 834 2.568623 TTGGGACCTTTCAGAGCTTC 57.431 50.000 0.00 0.00 0.00 3.86
812 837 1.613925 GGTTTTGGGACCTTTCAGAGC 59.386 52.381 0.00 0.00 36.73 4.09
814 839 1.477923 CCGGTTTTGGGACCTTTCAGA 60.478 52.381 0.00 0.00 37.56 3.27
824 849 1.906333 CCCAGGAACCGGTTTTGGG 60.906 63.158 36.58 36.58 39.61 4.12
825 850 0.757561 AACCCAGGAACCGGTTTTGG 60.758 55.000 30.56 30.56 38.15 3.28
838 878 2.432628 GAGTCCGTCGCAACCCAG 60.433 66.667 0.00 0.00 0.00 4.45
918 963 2.267681 CTGGACCTCGTACCTCGTGC 62.268 65.000 0.00 0.00 40.80 5.34
960 1005 3.134792 GAGAGGCAGGTCGAGCGA 61.135 66.667 9.28 0.00 0.00 4.93
961 1006 4.544689 CGAGAGGCAGGTCGAGCG 62.545 72.222 9.28 5.56 38.50 5.03
962 1007 4.863925 GCGAGAGGCAGGTCGAGC 62.864 72.222 6.48 6.48 42.87 5.03
1299 1896 3.814283 GGGACAGCATTGAATTGCAAAAA 59.186 39.130 1.71 0.00 45.23 1.94
1302 1899 1.275856 GGGGACAGCATTGAATTGCAA 59.724 47.619 0.00 0.00 45.23 4.08
1305 1902 3.681593 TTTGGGGACAGCATTGAATTG 57.318 42.857 0.00 0.00 44.54 2.32
1307 1904 3.443052 TGATTTGGGGACAGCATTGAAT 58.557 40.909 0.00 0.00 44.54 2.57
1314 1922 2.686915 CTCAAGATGATTTGGGGACAGC 59.313 50.000 0.00 0.00 44.54 4.40
1367 1979 5.231702 TGGAACTGCATCATCAAATTTGTG 58.768 37.500 17.47 14.31 0.00 3.33
1428 2127 7.078228 GTCCAGAAATTAGTTTTGCAGTGTAG 58.922 38.462 0.00 0.00 0.00 2.74
1459 2162 8.712285 ATAAAATTGAATCTTGTTGGCAGATG 57.288 30.769 0.00 0.00 0.00 2.90
1498 2207 4.018870 TCCACAATTAATCTGCAGGGTGTA 60.019 41.667 15.13 0.00 0.00 2.90
1575 2300 3.139077 CAGGACTGTTGGTGAGTAAACC 58.861 50.000 0.00 0.00 40.94 3.27
1576 2301 2.548480 GCAGGACTGTTGGTGAGTAAAC 59.452 50.000 0.82 0.00 0.00 2.01
1581 2306 0.394192 TCTGCAGGACTGTTGGTGAG 59.606 55.000 15.13 0.00 0.00 3.51
1583 2308 1.901591 AATCTGCAGGACTGTTGGTG 58.098 50.000 15.13 0.00 0.00 4.17
1633 2358 0.105778 GGTGTGGCTAGCTCTCATCC 59.894 60.000 15.72 11.23 0.00 3.51
1817 2542 8.676401 CCATATATGACAAACAGATGAAACACA 58.324 33.333 14.54 0.00 32.43 3.72
1829 2554 8.160106 AGAGAATTCCCTCCATATATGACAAAC 58.840 37.037 14.54 0.00 33.76 2.93
1928 2664 5.193679 AGCACTCCCAATTATTTCTACCAC 58.806 41.667 0.00 0.00 0.00 4.16
1943 2679 5.134661 AGTCTAAGTATACTGAGCACTCCC 58.865 45.833 12.01 0.00 0.00 4.30
1967 2703 9.109393 AGGTGTTGTGCATAATAATAGTAACAG 57.891 33.333 0.00 0.00 0.00 3.16
1980 2724 1.921982 ATGGCAAGGTGTTGTGCATA 58.078 45.000 0.00 0.00 42.74 3.14
1981 2725 1.921982 TATGGCAAGGTGTTGTGCAT 58.078 45.000 0.00 0.00 42.74 3.96
1988 2732 5.187576 AGTTGCATTAATTATGGCAAGGTGT 59.812 36.000 18.98 7.00 33.77 4.16
2004 2748 9.302345 GAGCGTATACACATATATAGTTGCATT 57.698 33.333 3.32 0.00 0.00 3.56
2005 2749 8.466798 TGAGCGTATACACATATATAGTTGCAT 58.533 33.333 3.32 0.00 0.00 3.96
2006 2750 7.753580 GTGAGCGTATACACATATATAGTTGCA 59.246 37.037 3.32 0.00 37.05 4.08
2050 2794 7.763613 AGGATGCCTATTCATTCTAAAGGAAT 58.236 34.615 5.13 5.13 37.32 3.01
2101 2845 5.774498 AAGGAAAGCTTAACAAGTGAAGG 57.226 39.130 0.00 0.00 0.00 3.46
2202 2949 0.692476 AGCCACACCATCTGTAAGCA 59.308 50.000 0.00 0.00 34.92 3.91
2247 2994 2.287547 GCAGCTCTGAATCGTCTAGAGG 60.288 54.545 6.08 6.08 38.65 3.69
2328 3075 6.844696 ACAATAGATACGGCTGTACAATTG 57.155 37.500 22.69 22.69 35.49 2.32
2356 3103 3.758023 TCATAATGTTGCAACTGTCCAGG 59.242 43.478 28.61 13.02 0.00 4.45
2357 3104 5.571784 ATCATAATGTTGCAACTGTCCAG 57.428 39.130 28.61 14.76 0.00 3.86
2372 3119 4.847198 TGACCAGTGAGTGCAATCATAAT 58.153 39.130 21.00 6.89 0.00 1.28
2400 3150 1.757118 TCTTCGGCCTGAACATAGGAG 59.243 52.381 0.00 0.00 40.42 3.69
2409 3163 3.485463 TTTTCTTCTTCTTCGGCCTGA 57.515 42.857 0.00 0.00 0.00 3.86
2496 3257 6.812998 TGTTCCGGGAGTAATAACATTAGAG 58.187 40.000 0.00 0.00 0.00 2.43
2675 3450 6.023603 TCCATAGAGTTTCTGAACCCTAAGT 58.976 40.000 0.00 0.00 36.39 2.24
3172 3983 1.503347 AGGCTCCCCTTCAAGGAAAAA 59.497 47.619 4.43 0.00 38.74 1.94
3173 3984 1.158007 AGGCTCCCCTTCAAGGAAAA 58.842 50.000 4.43 0.00 38.74 2.29
3174 3985 2.882955 AGGCTCCCCTTCAAGGAAA 58.117 52.632 4.43 0.00 38.74 3.13
3175 3986 4.690153 AGGCTCCCCTTCAAGGAA 57.310 55.556 4.43 0.00 38.74 3.36
3187 3998 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
3188 3999 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
3189 4000 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
3190 4001 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
3191 4002 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
3192 4003 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
3193 4004 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
3194 4005 1.515521 AACAGCTTTACCACTGCGCC 61.516 55.000 4.18 0.00 37.42 6.53
3195 4006 0.385974 CAACAGCTTTACCACTGCGC 60.386 55.000 0.00 0.00 37.42 6.09
3196 4007 0.385974 GCAACAGCTTTACCACTGCG 60.386 55.000 0.00 0.00 37.42 5.18
3197 4008 0.039165 GGCAACAGCTTTACCACTGC 60.039 55.000 0.00 0.00 37.42 4.40
3198 4009 1.609208 AGGCAACAGCTTTACCACTG 58.391 50.000 0.00 0.00 39.86 3.66
3199 4010 2.362077 CAAAGGCAACAGCTTTACCACT 59.638 45.455 0.00 0.00 41.41 4.00
3200 4011 2.100749 ACAAAGGCAACAGCTTTACCAC 59.899 45.455 0.00 0.00 41.41 4.16
3201 4012 2.100584 CACAAAGGCAACAGCTTTACCA 59.899 45.455 0.00 0.00 41.41 3.25
3202 4013 2.360801 TCACAAAGGCAACAGCTTTACC 59.639 45.455 0.00 0.00 41.41 2.85
3203 4014 3.372060 GTCACAAAGGCAACAGCTTTAC 58.628 45.455 0.00 0.00 41.41 2.01
3204 4015 2.360801 GGTCACAAAGGCAACAGCTTTA 59.639 45.455 0.00 0.00 41.41 1.85
3205 4016 1.136891 GGTCACAAAGGCAACAGCTTT 59.863 47.619 0.00 0.00 41.41 3.51
3206 4017 0.746659 GGTCACAAAGGCAACAGCTT 59.253 50.000 0.00 0.00 41.41 3.74
3207 4018 0.395586 TGGTCACAAAGGCAACAGCT 60.396 50.000 0.00 0.00 41.41 4.24
3208 4019 0.675633 ATGGTCACAAAGGCAACAGC 59.324 50.000 0.00 0.00 41.41 4.40
3209 4020 1.955778 TCATGGTCACAAAGGCAACAG 59.044 47.619 0.00 0.00 41.41 3.16
3210 4021 1.955778 CTCATGGTCACAAAGGCAACA 59.044 47.619 0.00 0.00 41.41 3.33
3211 4022 1.270550 CCTCATGGTCACAAAGGCAAC 59.729 52.381 0.00 0.00 30.01 4.17
3212 4023 1.133513 ACCTCATGGTCACAAAGGCAA 60.134 47.619 0.00 0.00 44.78 4.52
3213 4024 0.478072 ACCTCATGGTCACAAAGGCA 59.522 50.000 0.00 0.00 44.78 4.75
3214 4025 3.346426 ACCTCATGGTCACAAAGGC 57.654 52.632 0.00 0.00 44.78 4.35
3225 4036 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
3226 4037 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
3227 4038 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
3228 4039 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
3229 4040 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
3230 4041 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
3231 4042 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
3232 4043 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
3233 4044 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
3234 4045 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
3235 4046 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
3236 4047 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
3237 4048 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3238 4049 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3239 4050 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3240 4051 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3241 4052 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3242 4053 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3243 4054 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
3244 4055 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
3245 4056 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
3246 4057 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
3247 4058 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
3259 4070 7.040686 GCAACCTTTTCCTACATTTCTGTAAGA 60.041 37.037 0.00 0.00 44.68 2.10
3260 4071 7.084486 GCAACCTTTTCCTACATTTCTGTAAG 58.916 38.462 0.00 0.00 37.41 2.34
3261 4072 6.293735 CGCAACCTTTTCCTACATTTCTGTAA 60.294 38.462 0.00 0.00 37.41 2.41
3262 4073 5.180492 CGCAACCTTTTCCTACATTTCTGTA 59.820 40.000 0.00 0.00 36.79 2.74
3263 4074 4.023193 CGCAACCTTTTCCTACATTTCTGT 60.023 41.667 0.00 0.00 39.49 3.41
3264 4075 4.023193 ACGCAACCTTTTCCTACATTTCTG 60.023 41.667 0.00 0.00 0.00 3.02
3265 4076 4.142038 ACGCAACCTTTTCCTACATTTCT 58.858 39.130 0.00 0.00 0.00 2.52
3266 4077 4.499037 ACGCAACCTTTTCCTACATTTC 57.501 40.909 0.00 0.00 0.00 2.17
3267 4078 5.067954 AGTACGCAACCTTTTCCTACATTT 58.932 37.500 0.00 0.00 0.00 2.32
3268 4079 4.648651 AGTACGCAACCTTTTCCTACATT 58.351 39.130 0.00 0.00 0.00 2.71
3269 4080 4.281898 AGTACGCAACCTTTTCCTACAT 57.718 40.909 0.00 0.00 0.00 2.29
3270 4081 3.756933 AGTACGCAACCTTTTCCTACA 57.243 42.857 0.00 0.00 0.00 2.74
3271 4082 6.694844 GTCTATAGTACGCAACCTTTTCCTAC 59.305 42.308 0.00 0.00 0.00 3.18
3272 4083 6.183360 GGTCTATAGTACGCAACCTTTTCCTA 60.183 42.308 0.00 0.00 0.00 2.94
3273 4084 5.394993 GGTCTATAGTACGCAACCTTTTCCT 60.395 44.000 0.00 0.00 0.00 3.36
3274 4085 4.807834 GGTCTATAGTACGCAACCTTTTCC 59.192 45.833 0.00 0.00 0.00 3.13
3275 4086 4.807834 GGGTCTATAGTACGCAACCTTTTC 59.192 45.833 0.00 0.00 0.00 2.29
3276 4087 4.223477 TGGGTCTATAGTACGCAACCTTTT 59.777 41.667 14.98 0.00 36.92 2.27
3277 4088 3.770933 TGGGTCTATAGTACGCAACCTTT 59.229 43.478 14.98 0.00 36.92 3.11
3278 4089 3.368248 TGGGTCTATAGTACGCAACCTT 58.632 45.455 14.98 0.00 36.92 3.50
3279 4090 3.022557 TGGGTCTATAGTACGCAACCT 57.977 47.619 14.98 0.00 36.92 3.50
3280 4091 3.806625 TTGGGTCTATAGTACGCAACC 57.193 47.619 20.49 11.82 42.63 3.77
3281 4092 4.565564 CACTTTGGGTCTATAGTACGCAAC 59.434 45.833 22.43 6.45 45.77 4.17
3282 4093 4.382254 CCACTTTGGGTCTATAGTACGCAA 60.382 45.833 20.49 20.49 44.85 4.85
3283 4094 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
3284 4095 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
3285 4096 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
3295 4106 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3296 4107 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3297 4108 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3298 4109 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3299 4110 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3300 4111 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3301 4112 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3302 4113 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
3309 4120 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
3325 4136 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3328 4139 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3329 4140 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3330 4141 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3331 4142 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3337 4148 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
3338 4149 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
3339 4150 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
3340 4151 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
3341 4152 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
3365 4176 7.639113 TCAAGGAAAAAGAGTGCTCTAAAAA 57.361 32.000 1.77 0.00 39.39 1.94
3366 4177 7.122055 TGTTCAAGGAAAAAGAGTGCTCTAAAA 59.878 33.333 1.77 0.00 39.39 1.52
3367 4178 6.601613 TGTTCAAGGAAAAAGAGTGCTCTAAA 59.398 34.615 1.77 0.00 39.39 1.85
3368 4179 6.119536 TGTTCAAGGAAAAAGAGTGCTCTAA 58.880 36.000 1.77 0.00 39.39 2.10
3369 4180 5.680619 TGTTCAAGGAAAAAGAGTGCTCTA 58.319 37.500 1.77 0.00 39.39 2.43
3370 4181 4.526970 TGTTCAAGGAAAAAGAGTGCTCT 58.473 39.130 0.00 0.00 42.75 4.09
3371 4182 4.900635 TGTTCAAGGAAAAAGAGTGCTC 57.099 40.909 0.00 0.00 0.00 4.26
3372 4183 5.859205 AATGTTCAAGGAAAAAGAGTGCT 57.141 34.783 0.00 0.00 0.00 4.40
3373 4184 6.313658 ACAAAATGTTCAAGGAAAAAGAGTGC 59.686 34.615 0.00 0.00 0.00 4.40
3374 4185 7.832503 ACAAAATGTTCAAGGAAAAAGAGTG 57.167 32.000 0.00 0.00 0.00 3.51
3616 4427 1.361271 CCACACCACAAGCTGCAAG 59.639 57.895 1.02 0.00 0.00 4.01
3749 4560 3.258872 TCTTGAAAGGTGGATTTGGCATG 59.741 43.478 0.00 0.00 0.00 4.06
3913 4877 9.508642 CTAAGAAAGGAACTAAAACAGAGGAAT 57.491 33.333 0.00 0.00 38.49 3.01
4109 5092 9.657419 ATCCATGAGGTTCATTTCAAATAAAAC 57.343 29.630 0.00 0.76 34.28 2.43
4125 5108 5.314718 TGCAGATGAAATATCCATGAGGT 57.685 39.130 0.00 0.00 35.89 3.85
4144 5127 9.926158 ACAATGAAGATAAAATGTGTTATTGCA 57.074 25.926 0.00 0.00 0.00 4.08
4550 6698 1.375326 AAGGCGAGACCCTTGGAAC 59.625 57.895 0.00 0.00 43.43 3.62
4644 6793 4.627035 TGAAGATGATACACGTGCTTTCTG 59.373 41.667 17.22 0.00 0.00 3.02
4816 6966 8.055279 TGACTTCAGTTCTTCTTTGTTTTCAT 57.945 30.769 0.00 0.00 0.00 2.57
4893 7043 1.834263 ACATACCTTGTCCTCCTCTGC 59.166 52.381 0.00 0.00 30.89 4.26
5002 7286 0.534412 CCACAGCAGGGAGTAGTCTG 59.466 60.000 0.00 0.00 0.00 3.51
5319 8044 7.966246 AGTTTGCTTTTATTCATGAATGCAA 57.034 28.000 27.22 27.22 41.33 4.08
5344 8251 8.267620 TGTTGTCGATAATGAATCAAGAATGT 57.732 30.769 0.00 0.00 33.87 2.71
5350 8257 7.169140 CGAGGTATGTTGTCGATAATGAATCAA 59.831 37.037 0.00 0.00 35.70 2.57
5367 8274 5.296780 CAGAAATAATGGCAACGAGGTATGT 59.703 40.000 0.00 0.00 42.51 2.29
5374 8281 6.507958 TGAATTCAGAAATAATGGCAACGA 57.492 33.333 3.38 0.00 42.51 3.85
5375 8282 6.974048 TCATGAATTCAGAAATAATGGCAACG 59.026 34.615 14.54 0.00 42.51 4.10
5649 8565 3.332187 TGAAACAGGTATTGGTGGGATGA 59.668 43.478 0.00 0.00 0.00 2.92
5693 8609 6.423001 GCATAGTGATAAGGGTAAAACCTACG 59.577 42.308 0.00 0.00 40.87 3.51
5853 8772 9.749490 GCTGAAATGTAATGAAACAAATGATTG 57.251 29.630 0.00 0.00 42.46 2.67
5854 8773 9.715121 AGCTGAAATGTAATGAAACAAATGATT 57.285 25.926 0.00 0.00 32.02 2.57
5855 8774 9.362539 GAGCTGAAATGTAATGAAACAAATGAT 57.637 29.630 0.00 0.00 32.02 2.45
5856 8775 8.358895 TGAGCTGAAATGTAATGAAACAAATGA 58.641 29.630 0.00 0.00 32.02 2.57
5857 8776 8.430063 GTGAGCTGAAATGTAATGAAACAAATG 58.570 33.333 0.00 0.00 32.02 2.32
5858 8777 8.143193 TGTGAGCTGAAATGTAATGAAACAAAT 58.857 29.630 0.00 0.00 32.02 2.32
5931 8883 9.142014 ACCAATGGGATAAAAATCAATTATCGA 57.858 29.630 3.55 0.00 39.55 3.59
6236 9206 1.278238 CCGTCAAAGTATGCTCGACC 58.722 55.000 7.46 0.00 0.00 4.79
6394 9366 4.687018 TGCAAGCTATTCACAAAAAGCATG 59.313 37.500 0.00 0.00 37.44 4.06
6446 9418 2.867429 CAGATGTCCGAATTTGTTGCC 58.133 47.619 0.00 0.00 0.00 4.52
6450 9422 1.463674 GGGCAGATGTCCGAATTTGT 58.536 50.000 0.00 0.00 0.00 2.83
6503 9475 0.746204 GCTAACCTGGCAGAAGGCTC 60.746 60.000 17.94 0.00 41.46 4.70
6532 9504 5.682234 TCTGCAGTGAATCAAGAATCCTA 57.318 39.130 14.67 0.00 0.00 2.94
6675 9765 2.082231 CTCATTCCTCCACTGCACAAG 58.918 52.381 0.00 0.00 0.00 3.16
6889 9982 2.216898 GCTATGTGCTTGTGAGGATCC 58.783 52.381 2.48 2.48 38.95 3.36
6898 9991 2.100031 TGGACGCGCTATGTGCTTG 61.100 57.895 5.73 0.00 40.11 4.01
6967 10060 7.722363 TGGTAATACTCATGTCGATGTTACAT 58.278 34.615 0.00 0.00 38.08 2.29
7002 10095 4.260294 CGCTTGTTAACCGTGAACACTTTA 60.260 41.667 0.44 0.00 36.55 1.85
7003 10096 3.486209 CGCTTGTTAACCGTGAACACTTT 60.486 43.478 0.44 0.00 36.55 2.66
7122 10221 2.947652 CTGTTATCACAATGCCTCCTGG 59.052 50.000 0.00 0.00 30.36 4.45
7249 10357 3.280938 TTGGCGGCCCTGCTGTATT 62.281 57.895 17.97 0.00 37.24 1.89
7289 10397 6.801377 CGAATATTCAAGCTGTTTGCAACTAA 59.199 34.615 15.57 0.00 45.94 2.24
7316 10424 2.438434 GGTGTATTGCCCGCTGCT 60.438 61.111 0.00 0.00 42.00 4.24
7319 10427 2.186903 CGAGGTGTATTGCCCGCT 59.813 61.111 0.00 0.00 0.00 5.52
7411 10522 3.567579 ATGCCAACCAGGGTGTCCG 62.568 63.158 3.04 0.00 38.09 4.79
7495 10612 4.174009 CGCGATTATCCCTTGTATACTGG 58.826 47.826 0.00 6.48 0.00 4.00
7507 10624 1.228657 GGTGCCTTCCGCGATTATCC 61.229 60.000 8.23 0.00 42.08 2.59
7713 10845 1.727511 TTGTTGCTGCTGCCACTGTC 61.728 55.000 18.44 2.66 36.03 3.51
7788 10920 4.299547 TCTGCGACTGCTGCGGTT 62.300 61.111 16.36 0.00 43.34 4.44
7828 10960 2.241176 TGGTGGTCTCCTGTTTGAAGTT 59.759 45.455 0.00 0.00 0.00 2.66
7873 11019 1.065126 AGCAAAACCTGGGCTAGCTAG 60.065 52.381 16.84 16.84 35.82 3.42
7874 11020 0.991920 AGCAAAACCTGGGCTAGCTA 59.008 50.000 15.72 3.29 35.82 3.32
7875 11021 0.610232 CAGCAAAACCTGGGCTAGCT 60.610 55.000 15.72 0.00 35.82 3.32
7876 11022 0.895559 ACAGCAAAACCTGGGCTAGC 60.896 55.000 6.04 6.04 37.16 3.42
7897 11047 9.717942 AAGTCGAAGTAAGTTCTAGTAAGTAGA 57.282 33.333 0.00 0.00 35.84 2.59
7970 11121 3.446442 ACCATGACCAAGAAGCTTGAT 57.554 42.857 2.10 0.00 0.00 2.57
8050 11203 5.011023 TGGAAGGAGCCAAATTTCTTCTTTC 59.989 40.000 13.30 7.54 34.31 2.62
8074 11227 6.590234 AACCGCCTTATCAATTTCTTTCTT 57.410 33.333 0.00 0.00 0.00 2.52
8129 11282 6.677913 AGGAATGTAATCGAAAACCTGTTTG 58.322 36.000 0.00 0.00 32.36 2.93
8130 11283 6.488683 TGAGGAATGTAATCGAAAACCTGTTT 59.511 34.615 0.00 0.00 0.00 2.83
8131 11284 6.001460 TGAGGAATGTAATCGAAAACCTGTT 58.999 36.000 0.00 0.00 0.00 3.16
8134 11287 5.045869 TCCTGAGGAATGTAATCGAAAACCT 60.046 40.000 0.00 0.00 0.00 3.50
8143 11297 8.314021 GTTCCAAAATTTCCTGAGGAATGTAAT 58.686 33.333 15.75 2.28 41.71 1.89
8148 11302 6.070596 GGATGTTCCAAAATTTCCTGAGGAAT 60.071 38.462 15.75 0.00 37.78 3.01
8156 11310 5.700832 GGTTTGAGGATGTTCCAAAATTTCC 59.299 40.000 0.00 0.00 39.61 3.13
8195 11350 5.648092 GTGCCAAGACAGAAACCTATAACAT 59.352 40.000 0.00 0.00 0.00 2.71
8197 11352 4.092968 CGTGCCAAGACAGAAACCTATAAC 59.907 45.833 0.00 0.00 0.00 1.89
8208 11363 0.946221 GTCAGACCGTGCCAAGACAG 60.946 60.000 0.00 0.00 0.00 3.51
8212 11367 1.354337 CGATGTCAGACCGTGCCAAG 61.354 60.000 0.00 0.00 0.00 3.61
8215 11370 1.080093 TTCGATGTCAGACCGTGCC 60.080 57.895 0.00 0.00 0.00 5.01
8224 11379 5.518847 GGATTAATTCAGACGTTCGATGTCA 59.481 40.000 17.45 1.44 36.61 3.58
8231 11386 7.715686 AGGAATAAGGGATTAATTCAGACGTTC 59.284 37.037 0.00 0.00 0.00 3.95
8234 11389 9.209175 CTTAGGAATAAGGGATTAATTCAGACG 57.791 37.037 0.00 0.00 0.00 4.18
8255 11410 0.615331 TCAGCTGCCTTGACCTTAGG 59.385 55.000 9.47 0.00 35.80 2.69
8263 11418 5.679734 AACGAATATTATCAGCTGCCTTG 57.320 39.130 9.47 0.00 0.00 3.61
8313 11468 7.470009 GCATTTCACTGGGAACTTAGAGAAAAA 60.470 37.037 0.00 0.00 36.48 1.94
8314 11469 6.016276 GCATTTCACTGGGAACTTAGAGAAAA 60.016 38.462 0.00 0.00 36.48 2.29
8342 11497 0.460987 CTAGGGAAAGCTGAGTGGCG 60.461 60.000 0.00 0.00 37.29 5.69
8356 11511 4.096003 CACGGTGGGCCACTAGGG 62.096 72.222 33.87 25.14 40.85 3.53
8369 11524 5.051240 GGTTTGAGTATTACTAATCGCACGG 60.051 44.000 0.00 0.00 0.00 4.94
8374 11529 5.287226 AGGCGGTTTGAGTATTACTAATCG 58.713 41.667 7.38 7.38 32.07 3.34
8420 11575 1.296832 TGGAGGGTTAGGATCCCATCA 59.703 52.381 8.55 0.00 46.82 3.07
8497 11653 4.488126 TTTGAGTGCATAGTTGTGAAGC 57.512 40.909 0.00 0.00 0.00 3.86
8510 11666 5.344128 CAGAATGTAAAGTGCATTTGAGTGC 59.656 40.000 0.00 0.00 45.25 4.40
8568 11724 9.976511 GAATTTTAAAGTTAACTTTACTGGGCT 57.023 29.630 31.16 17.94 45.11 5.19
8569 11725 9.752961 TGAATTTTAAAGTTAACTTTACTGGGC 57.247 29.630 31.16 22.33 45.11 5.36
8629 11785 5.352643 AGCGTTAGTTAACATTGGTTGTC 57.647 39.130 8.61 0.00 37.68 3.18
8632 11788 8.569641 TCATAAAAGCGTTAGTTAACATTGGTT 58.430 29.630 8.61 3.85 41.06 3.67
8642 11798 8.865590 ACAATTGTTTCATAAAAGCGTTAGTT 57.134 26.923 4.92 0.00 0.00 2.24
8648 11804 8.942669 TGTAGTACAATTGTTTCATAAAAGCG 57.057 30.769 17.78 0.00 0.00 4.68
8691 11847 6.922247 AAGTCAGATGCATCAAGATAACTG 57.078 37.500 27.81 14.61 0.00 3.16
8703 11859 8.565896 AAACATCAATAACTAAGTCAGATGCA 57.434 30.769 0.00 0.00 35.91 3.96
8796 11952 6.855836 TGTTCAAAGCATCATATTGAAGACC 58.144 36.000 0.79 0.00 42.03 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.