Multiple sequence alignment - TraesCS2D01G072700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G072700 chr2D 100.000 4516 0 0 1 4516 30471667 30467152 0.000000e+00 8340.0
1 TraesCS2D01G072700 chr2D 78.551 1063 174 34 502 1518 8976477 8977531 0.000000e+00 651.0
2 TraesCS2D01G072700 chr2D 80.612 196 30 5 63 253 112538603 112538795 1.420000e-30 145.0
3 TraesCS2D01G072700 chr2D 94.118 51 3 0 4386 4436 481061907 481061857 1.460000e-10 78.7
4 TraesCS2D01G072700 chr2D 100.000 37 0 0 4842 4878 30466826 30466790 8.760000e-08 69.4
5 TraesCS2D01G072700 chr2A 94.692 1978 75 9 2093 4067 32492634 32490684 0.000000e+00 3044.0
6 TraesCS2D01G072700 chr2A 80.715 1343 199 25 497 1809 14749661 14750973 0.000000e+00 990.0
7 TraesCS2D01G072700 chr2A 94.479 489 15 2 1562 2039 32493118 32492631 0.000000e+00 743.0
8 TraesCS2D01G072700 chr2A 75.862 1131 208 40 729 1806 32497343 32498461 2.600000e-142 516.0
9 TraesCS2D01G072700 chr2A 92.460 252 12 2 4131 4381 32490563 32490318 2.160000e-93 353.0
10 TraesCS2D01G072700 chr2A 89.552 67 6 1 4386 4451 624031834 624031768 3.130000e-12 84.2
11 TraesCS2D01G072700 chr5B 91.414 1945 117 26 2016 3934 84669398 84667478 0.000000e+00 2621.0
12 TraesCS2D01G072700 chr5B 87.856 807 78 15 480 1281 84714040 84713249 0.000000e+00 929.0
13 TraesCS2D01G072700 chr5B 94.011 551 32 1 1277 1827 84692826 84692277 0.000000e+00 833.0
14 TraesCS2D01G072700 chr5B 87.209 172 8 5 1824 1981 84692227 84692056 3.000000e-42 183.0
15 TraesCS2D01G072700 chr5B 81.951 205 28 9 63 261 18522233 18522032 1.090000e-36 165.0
16 TraesCS2D01G072700 chr5A 92.221 1337 79 10 498 1827 71462725 71461407 0.000000e+00 1869.0
17 TraesCS2D01G072700 chr5A 90.688 988 68 7 3082 4046 71460208 71459222 0.000000e+00 1293.0
18 TraesCS2D01G072700 chr5A 87.577 974 52 18 1826 2730 71461360 71460387 0.000000e+00 1064.0
19 TraesCS2D01G072700 chr5A 85.507 276 19 9 2261 2517 6768132 6767859 8.050000e-68 268.0
20 TraesCS2D01G072700 chr7B 86.071 1723 134 35 345 2019 681556079 681557743 0.000000e+00 1755.0
21 TraesCS2D01G072700 chr7B 92.196 551 41 2 3381 3930 681577182 681577731 0.000000e+00 778.0
22 TraesCS2D01G072700 chr7B 86.823 683 67 13 2716 3384 681571434 681572107 0.000000e+00 741.0
23 TraesCS2D01G072700 chr7B 90.807 533 41 4 2016 2545 681557781 681558308 0.000000e+00 706.0
24 TraesCS2D01G072700 chr7B 75.897 1087 217 29 751 1802 115410330 115409254 9.360000e-142 514.0
25 TraesCS2D01G072700 chr7B 80.465 215 27 10 57 263 451365298 451365091 3.040000e-32 150.0
26 TraesCS2D01G072700 chr2B 81.162 1136 165 21 705 1809 23046873 23047990 0.000000e+00 867.0
27 TraesCS2D01G072700 chr2B 81.857 700 102 14 744 1423 49981362 49980668 2.550000e-157 566.0
28 TraesCS2D01G072700 chr2B 83.065 124 16 3 4395 4516 658453887 658453767 1.860000e-19 108.0
29 TraesCS2D01G072700 chr7D 76.243 1086 207 37 744 1791 153640330 153639258 3.340000e-146 529.0
30 TraesCS2D01G072700 chr7D 84.393 173 11 2 2260 2417 90076992 90077163 6.540000e-34 156.0
31 TraesCS2D01G072700 chr7D 81.281 203 28 7 63 260 449447771 449447968 6.540000e-34 156.0
32 TraesCS2D01G072700 chr7D 83.453 139 21 2 751 888 486107889 486107752 1.430000e-25 128.0
33 TraesCS2D01G072700 chr7D 95.833 48 2 0 4389 4436 417608037 417607990 1.460000e-10 78.7
34 TraesCS2D01G072700 chr7D 95.652 46 2 0 4386 4431 68499481 68499526 1.880000e-09 75.0
35 TraesCS2D01G072700 chr5D 84.450 418 31 11 3653 4046 76024884 76024477 9.910000e-102 381.0
36 TraesCS2D01G072700 chr1A 87.805 164 11 2 2353 2508 98575127 98575289 3.000000e-42 183.0
37 TraesCS2D01G072700 chr1A 79.710 207 27 9 59 264 262943238 262943046 8.520000e-28 135.0
38 TraesCS2D01G072700 chr1A 84.444 135 6 7 2259 2378 98574995 98575129 8.580000e-23 119.0
39 TraesCS2D01G072700 chr1A 94.118 51 3 0 4386 4436 564343689 564343639 1.460000e-10 78.7
40 TraesCS2D01G072700 chr3B 82.126 207 28 5 63 263 21383830 21384033 8.400000e-38 169.0
41 TraesCS2D01G072700 chrUn 84.884 172 10 2 2261 2417 95567171 95567341 5.050000e-35 159.0
42 TraesCS2D01G072700 chrUn 85.321 109 16 0 154 262 358028064 358028172 3.990000e-21 113.0
43 TraesCS2D01G072700 chr4D 80.928 194 26 10 76 263 497684253 497684441 5.090000e-30 143.0
44 TraesCS2D01G072700 chr1D 79.474 190 31 5 63 247 415647552 415647366 1.430000e-25 128.0
45 TraesCS2D01G072700 chr7A 82.979 141 22 2 749 888 554491491 554491352 5.130000e-25 126.0
46 TraesCS2D01G072700 chr6D 73.879 379 68 24 744 1093 438456970 438457346 6.630000e-24 122.0
47 TraesCS2D01G072700 chr4B 86.585 82 6 4 4386 4464 629694647 629694568 8.700000e-13 86.1
48 TraesCS2D01G072700 chr4B 95.833 48 2 0 4389 4436 638157807 638157854 1.460000e-10 78.7
49 TraesCS2D01G072700 chr4A 95.918 49 2 0 4388 4436 284626892 284626940 4.050000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G072700 chr2D 30466790 30471667 4877 True 4204.700000 8340 100.000 1 4878 2 chr2D.!!$R2 4877
1 TraesCS2D01G072700 chr2D 8976477 8977531 1054 False 651.000000 651 78.551 502 1518 1 chr2D.!!$F1 1016
2 TraesCS2D01G072700 chr2A 32490318 32493118 2800 True 1380.000000 3044 93.877 1562 4381 3 chr2A.!!$R2 2819
3 TraesCS2D01G072700 chr2A 14749661 14750973 1312 False 990.000000 990 80.715 497 1809 1 chr2A.!!$F1 1312
4 TraesCS2D01G072700 chr2A 32497343 32498461 1118 False 516.000000 516 75.862 729 1806 1 chr2A.!!$F2 1077
5 TraesCS2D01G072700 chr5B 84667478 84669398 1920 True 2621.000000 2621 91.414 2016 3934 1 chr5B.!!$R2 1918
6 TraesCS2D01G072700 chr5B 84713249 84714040 791 True 929.000000 929 87.856 480 1281 1 chr5B.!!$R3 801
7 TraesCS2D01G072700 chr5B 84692056 84692826 770 True 508.000000 833 90.610 1277 1981 2 chr5B.!!$R4 704
8 TraesCS2D01G072700 chr5A 71459222 71462725 3503 True 1408.666667 1869 90.162 498 4046 3 chr5A.!!$R2 3548
9 TraesCS2D01G072700 chr7B 681556079 681558308 2229 False 1230.500000 1755 88.439 345 2545 2 chr7B.!!$F3 2200
10 TraesCS2D01G072700 chr7B 681577182 681577731 549 False 778.000000 778 92.196 3381 3930 1 chr7B.!!$F2 549
11 TraesCS2D01G072700 chr7B 681571434 681572107 673 False 741.000000 741 86.823 2716 3384 1 chr7B.!!$F1 668
12 TraesCS2D01G072700 chr7B 115409254 115410330 1076 True 514.000000 514 75.897 751 1802 1 chr7B.!!$R1 1051
13 TraesCS2D01G072700 chr2B 23046873 23047990 1117 False 867.000000 867 81.162 705 1809 1 chr2B.!!$F1 1104
14 TraesCS2D01G072700 chr2B 49980668 49981362 694 True 566.000000 566 81.857 744 1423 1 chr2B.!!$R1 679
15 TraesCS2D01G072700 chr7D 153639258 153640330 1072 True 529.000000 529 76.243 744 1791 1 chr7D.!!$R1 1047

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 141 0.032117 AGGGAGGGATGATGACGACA 60.032 55.0 0.0 0.0 0.00 4.35 F
141 142 0.105039 GGGAGGGATGATGACGACAC 59.895 60.0 0.0 0.0 0.00 3.67 F
142 143 0.249073 GGAGGGATGATGACGACACG 60.249 60.0 0.0 0.0 0.00 4.49 F
449 458 0.383949 GCTTACGAGCCTCCAGAGAG 59.616 60.0 0.0 0.0 43.29 3.20 F
463 485 0.402504 AGAGAGTCACGGACCAGTCT 59.597 55.0 0.0 0.0 32.18 3.24 F
2359 2654 0.034059 GCGGCAGCTAGTACATGGAT 59.966 55.0 0.0 0.0 41.01 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1496 1582 0.783206 TGGCCCCAAGAATCCAAAGA 59.217 50.000 0.00 0.0 0.00 2.52 R
1511 1597 1.076485 AGGACATGATTGCCTGGCC 60.076 57.895 17.53 0.0 41.21 5.36 R
2086 2367 4.455533 AGCAAACGAACATTTAGATGCTGA 59.544 37.500 0.00 0.0 41.01 4.26 R
2292 2573 2.250939 CGTTTCGGACAAGCTGCCA 61.251 57.895 0.00 0.0 0.00 4.92 R
2795 3108 0.670706 CAGCTAGCAGTGCCGAGATA 59.329 55.000 18.83 0.0 0.00 1.98 R
4441 4851 0.105194 TGAGGGGGTTGTCTGAGTCA 60.105 55.000 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.455674 TTCATGTGTCTTCAGGTCGG 57.544 50.000 0.00 0.00 0.00 4.79
20 21 1.627864 TCATGTGTCTTCAGGTCGGA 58.372 50.000 0.00 0.00 0.00 4.55
21 22 2.179427 TCATGTGTCTTCAGGTCGGAT 58.821 47.619 0.00 0.00 0.00 4.18
22 23 2.166459 TCATGTGTCTTCAGGTCGGATC 59.834 50.000 0.00 0.00 0.00 3.36
23 24 0.895530 TGTGTCTTCAGGTCGGATCC 59.104 55.000 0.00 0.00 0.00 3.36
24 25 1.187087 GTGTCTTCAGGTCGGATCCT 58.813 55.000 10.75 0.00 38.51 3.24
25 26 1.550976 GTGTCTTCAGGTCGGATCCTT 59.449 52.381 10.75 0.00 35.37 3.36
26 27 2.028020 GTGTCTTCAGGTCGGATCCTTT 60.028 50.000 10.75 0.00 35.37 3.11
27 28 2.637872 TGTCTTCAGGTCGGATCCTTTT 59.362 45.455 10.75 0.00 35.37 2.27
28 29 3.263261 GTCTTCAGGTCGGATCCTTTTC 58.737 50.000 10.75 0.00 35.37 2.29
29 30 2.903784 TCTTCAGGTCGGATCCTTTTCA 59.096 45.455 10.75 0.00 35.37 2.69
30 31 3.519510 TCTTCAGGTCGGATCCTTTTCAT 59.480 43.478 10.75 0.00 35.37 2.57
31 32 3.543680 TCAGGTCGGATCCTTTTCATC 57.456 47.619 10.75 0.00 35.37 2.92
32 33 2.159099 TCAGGTCGGATCCTTTTCATCG 60.159 50.000 10.75 0.00 35.37 3.84
33 34 1.139058 AGGTCGGATCCTTTTCATCGG 59.861 52.381 10.75 0.00 33.52 4.18
34 35 0.938008 GTCGGATCCTTTTCATCGGC 59.062 55.000 10.75 0.00 0.00 5.54
35 36 0.539518 TCGGATCCTTTTCATCGGCA 59.460 50.000 10.75 0.00 0.00 5.69
36 37 0.657840 CGGATCCTTTTCATCGGCAC 59.342 55.000 10.75 0.00 0.00 5.01
37 38 1.025041 GGATCCTTTTCATCGGCACC 58.975 55.000 3.84 0.00 0.00 5.01
38 39 0.657840 GATCCTTTTCATCGGCACCG 59.342 55.000 1.73 1.73 41.35 4.94
39 40 0.748005 ATCCTTTTCATCGGCACCGG 60.748 55.000 9.58 0.00 40.25 5.28
40 41 1.674322 CCTTTTCATCGGCACCGGT 60.674 57.895 0.00 0.00 40.25 5.28
41 42 1.241315 CCTTTTCATCGGCACCGGTT 61.241 55.000 2.97 0.00 40.25 4.44
42 43 0.109781 CTTTTCATCGGCACCGGTTG 60.110 55.000 2.97 0.00 40.25 3.77
53 54 3.663176 CCGGTTGCTGCACTGGTG 61.663 66.667 16.91 0.00 38.30 4.17
54 55 2.901840 CGGTTGCTGCACTGGTGT 60.902 61.111 0.00 0.00 0.00 4.16
55 56 2.723746 GGTTGCTGCACTGGTGTG 59.276 61.111 0.00 0.00 46.37 3.82
56 57 2.120909 GGTTGCTGCACTGGTGTGT 61.121 57.895 0.00 0.00 45.44 3.72
57 58 1.666209 GGTTGCTGCACTGGTGTGTT 61.666 55.000 0.00 0.00 45.44 3.32
58 59 0.526096 GTTGCTGCACTGGTGTGTTG 60.526 55.000 0.00 0.00 45.44 3.33
59 60 1.665264 TTGCTGCACTGGTGTGTTGG 61.665 55.000 0.00 0.00 45.44 3.77
60 61 2.848858 GCTGCACTGGTGTGTTGGG 61.849 63.158 0.00 0.00 45.44 4.12
61 62 1.453745 CTGCACTGGTGTGTTGGGT 60.454 57.895 2.64 0.00 45.44 4.51
62 63 1.000270 TGCACTGGTGTGTTGGGTT 60.000 52.632 2.64 0.00 45.44 4.11
63 64 0.613292 TGCACTGGTGTGTTGGGTTT 60.613 50.000 2.64 0.00 45.44 3.27
64 65 1.341089 TGCACTGGTGTGTTGGGTTTA 60.341 47.619 2.64 0.00 45.44 2.01
65 66 1.336755 GCACTGGTGTGTTGGGTTTAG 59.663 52.381 2.64 0.00 45.44 1.85
66 67 1.336755 CACTGGTGTGTTGGGTTTAGC 59.663 52.381 0.00 0.00 39.24 3.09
67 68 1.064314 ACTGGTGTGTTGGGTTTAGCA 60.064 47.619 0.00 0.00 0.00 3.49
68 69 2.238521 CTGGTGTGTTGGGTTTAGCAT 58.761 47.619 0.00 0.00 0.00 3.79
69 70 1.959985 TGGTGTGTTGGGTTTAGCATG 59.040 47.619 0.00 0.00 0.00 4.06
70 71 2.235016 GGTGTGTTGGGTTTAGCATGA 58.765 47.619 0.00 0.00 0.00 3.07
71 72 2.825532 GGTGTGTTGGGTTTAGCATGAT 59.174 45.455 0.00 0.00 0.00 2.45
72 73 3.367292 GGTGTGTTGGGTTTAGCATGATG 60.367 47.826 0.00 0.00 0.00 3.07
73 74 3.505680 GTGTGTTGGGTTTAGCATGATGA 59.494 43.478 0.00 0.00 0.00 2.92
74 75 3.505680 TGTGTTGGGTTTAGCATGATGAC 59.494 43.478 0.00 0.00 0.00 3.06
75 76 3.758554 GTGTTGGGTTTAGCATGATGACT 59.241 43.478 0.00 0.00 0.00 3.41
76 77 4.218417 GTGTTGGGTTTAGCATGATGACTT 59.782 41.667 0.00 0.00 0.00 3.01
77 78 4.458989 TGTTGGGTTTAGCATGATGACTTC 59.541 41.667 0.00 0.00 0.00 3.01
78 79 4.574674 TGGGTTTAGCATGATGACTTCT 57.425 40.909 0.00 0.00 0.00 2.85
79 80 4.517285 TGGGTTTAGCATGATGACTTCTC 58.483 43.478 0.00 0.00 0.00 2.87
80 81 3.557595 GGGTTTAGCATGATGACTTCTCG 59.442 47.826 0.00 0.00 0.00 4.04
81 82 4.433615 GGTTTAGCATGATGACTTCTCGA 58.566 43.478 0.00 0.00 0.00 4.04
82 83 4.268884 GGTTTAGCATGATGACTTCTCGAC 59.731 45.833 0.00 0.00 0.00 4.20
83 84 4.991153 TTAGCATGATGACTTCTCGACT 57.009 40.909 0.00 0.00 0.00 4.18
84 85 3.162202 AGCATGATGACTTCTCGACTG 57.838 47.619 0.00 0.00 0.00 3.51
85 86 2.495270 AGCATGATGACTTCTCGACTGT 59.505 45.455 0.00 0.00 0.00 3.55
86 87 2.857152 GCATGATGACTTCTCGACTGTC 59.143 50.000 0.00 0.00 0.00 3.51
87 88 3.428725 GCATGATGACTTCTCGACTGTCT 60.429 47.826 6.21 0.00 0.00 3.41
88 89 4.742417 CATGATGACTTCTCGACTGTCTT 58.258 43.478 6.21 3.62 0.00 3.01
89 90 4.427096 TGATGACTTCTCGACTGTCTTC 57.573 45.455 6.21 12.54 36.24 2.87
90 91 3.191581 TGATGACTTCTCGACTGTCTTCC 59.808 47.826 6.21 5.29 35.42 3.46
91 92 2.583143 TGACTTCTCGACTGTCTTCCA 58.417 47.619 6.21 0.00 0.00 3.53
92 93 2.293677 TGACTTCTCGACTGTCTTCCAC 59.706 50.000 6.21 0.00 0.00 4.02
93 94 2.293677 GACTTCTCGACTGTCTTCCACA 59.706 50.000 6.21 0.00 0.00 4.17
94 95 2.693591 ACTTCTCGACTGTCTTCCACAA 59.306 45.455 6.21 0.00 33.31 3.33
95 96 3.243569 ACTTCTCGACTGTCTTCCACAAG 60.244 47.826 6.21 2.59 33.31 3.16
96 97 2.583143 TCTCGACTGTCTTCCACAAGA 58.417 47.619 6.21 0.00 36.19 3.02
97 98 2.956333 TCTCGACTGTCTTCCACAAGAA 59.044 45.455 6.21 0.00 40.49 2.52
106 107 3.097877 CTTCCACAAGAAGTTTTGCCC 57.902 47.619 0.00 0.00 45.99 5.36
107 108 2.452600 TCCACAAGAAGTTTTGCCCT 57.547 45.000 0.00 0.00 0.00 5.19
108 109 2.031120 TCCACAAGAAGTTTTGCCCTG 58.969 47.619 0.00 0.00 0.00 4.45
109 110 1.538849 CCACAAGAAGTTTTGCCCTGC 60.539 52.381 0.00 0.00 0.00 4.85
110 111 1.410153 CACAAGAAGTTTTGCCCTGCT 59.590 47.619 0.00 0.00 0.00 4.24
111 112 1.683385 ACAAGAAGTTTTGCCCTGCTC 59.317 47.619 0.00 0.00 0.00 4.26
112 113 1.959282 CAAGAAGTTTTGCCCTGCTCT 59.041 47.619 0.00 0.00 0.00 4.09
113 114 1.613836 AGAAGTTTTGCCCTGCTCTG 58.386 50.000 0.00 0.00 0.00 3.35
114 115 0.600057 GAAGTTTTGCCCTGCTCTGG 59.400 55.000 0.00 0.00 0.00 3.86
122 123 3.847602 CCTGCTCTGGCGAGGGAG 61.848 72.222 0.00 0.00 42.25 4.30
123 124 3.847602 CTGCTCTGGCGAGGGAGG 61.848 72.222 0.00 0.00 42.25 4.30
126 127 2.837291 CTCTGGCGAGGGAGGGAG 60.837 72.222 0.00 0.00 33.51 4.30
127 128 4.465446 TCTGGCGAGGGAGGGAGG 62.465 72.222 0.00 0.00 0.00 4.30
130 131 4.565850 GGCGAGGGAGGGAGGGAT 62.566 72.222 0.00 0.00 0.00 3.85
131 132 3.237741 GCGAGGGAGGGAGGGATG 61.238 72.222 0.00 0.00 0.00 3.51
132 133 2.609339 CGAGGGAGGGAGGGATGA 59.391 66.667 0.00 0.00 0.00 2.92
133 134 1.157276 CGAGGGAGGGAGGGATGAT 59.843 63.158 0.00 0.00 0.00 2.45
134 135 1.190833 CGAGGGAGGGAGGGATGATG 61.191 65.000 0.00 0.00 0.00 3.07
135 136 0.192064 GAGGGAGGGAGGGATGATGA 59.808 60.000 0.00 0.00 0.00 2.92
136 137 0.104725 AGGGAGGGAGGGATGATGAC 60.105 60.000 0.00 0.00 0.00 3.06
137 138 1.476007 GGGAGGGAGGGATGATGACG 61.476 65.000 0.00 0.00 0.00 4.35
138 139 0.470080 GGAGGGAGGGATGATGACGA 60.470 60.000 0.00 0.00 0.00 4.20
139 140 0.676736 GAGGGAGGGATGATGACGAC 59.323 60.000 0.00 0.00 0.00 4.34
140 141 0.032117 AGGGAGGGATGATGACGACA 60.032 55.000 0.00 0.00 0.00 4.35
141 142 0.105039 GGGAGGGATGATGACGACAC 59.895 60.000 0.00 0.00 0.00 3.67
142 143 0.249073 GGAGGGATGATGACGACACG 60.249 60.000 0.00 0.00 0.00 4.49
143 144 0.456221 GAGGGATGATGACGACACGT 59.544 55.000 0.00 0.00 45.10 4.49
154 155 1.321474 ACGACACGTCCTAGTTTCCA 58.679 50.000 0.00 0.00 33.69 3.53
155 156 1.268899 ACGACACGTCCTAGTTTCCAG 59.731 52.381 0.00 0.00 33.69 3.86
156 157 1.268899 CGACACGTCCTAGTTTCCAGT 59.731 52.381 0.00 0.00 0.00 4.00
157 158 2.673833 GACACGTCCTAGTTTCCAGTG 58.326 52.381 0.00 0.00 0.00 3.66
158 159 2.035576 GACACGTCCTAGTTTCCAGTGT 59.964 50.000 0.00 0.00 42.98 3.55
159 160 2.433239 ACACGTCCTAGTTTCCAGTGTT 59.567 45.455 0.00 0.00 38.03 3.32
160 161 3.118519 ACACGTCCTAGTTTCCAGTGTTT 60.119 43.478 0.00 0.00 38.03 2.83
161 162 4.099881 ACACGTCCTAGTTTCCAGTGTTTA 59.900 41.667 0.00 0.00 38.03 2.01
162 163 5.221581 ACACGTCCTAGTTTCCAGTGTTTAT 60.222 40.000 0.00 0.00 38.03 1.40
163 164 6.015180 ACACGTCCTAGTTTCCAGTGTTTATA 60.015 38.462 0.00 0.00 38.03 0.98
164 165 6.530534 CACGTCCTAGTTTCCAGTGTTTATAG 59.469 42.308 0.00 0.00 0.00 1.31
165 166 6.210185 ACGTCCTAGTTTCCAGTGTTTATAGT 59.790 38.462 0.00 0.00 0.00 2.12
166 167 6.750963 CGTCCTAGTTTCCAGTGTTTATAGTC 59.249 42.308 0.00 0.00 0.00 2.59
167 168 6.750963 GTCCTAGTTTCCAGTGTTTATAGTCG 59.249 42.308 0.00 0.00 0.00 4.18
168 169 6.435277 TCCTAGTTTCCAGTGTTTATAGTCGT 59.565 38.462 0.00 0.00 0.00 4.34
169 170 6.750963 CCTAGTTTCCAGTGTTTATAGTCGTC 59.249 42.308 0.00 0.00 0.00 4.20
170 171 5.159209 AGTTTCCAGTGTTTATAGTCGTCG 58.841 41.667 0.00 0.00 0.00 5.12
171 172 3.141002 TCCAGTGTTTATAGTCGTCGC 57.859 47.619 0.00 0.00 0.00 5.19
172 173 2.751259 TCCAGTGTTTATAGTCGTCGCT 59.249 45.455 0.00 0.00 0.00 4.93
173 174 3.940852 TCCAGTGTTTATAGTCGTCGCTA 59.059 43.478 0.00 0.00 0.00 4.26
174 175 4.034858 TCCAGTGTTTATAGTCGTCGCTAG 59.965 45.833 0.00 0.00 0.00 3.42
175 176 4.280461 CAGTGTTTATAGTCGTCGCTAGG 58.720 47.826 0.00 0.00 0.00 3.02
176 177 3.944015 AGTGTTTATAGTCGTCGCTAGGT 59.056 43.478 0.00 0.00 0.00 3.08
177 178 5.007039 CAGTGTTTATAGTCGTCGCTAGGTA 59.993 44.000 0.00 0.00 0.00 3.08
178 179 5.236047 AGTGTTTATAGTCGTCGCTAGGTAG 59.764 44.000 0.00 0.00 0.00 3.18
179 180 5.007136 GTGTTTATAGTCGTCGCTAGGTAGT 59.993 44.000 0.00 0.00 0.00 2.73
180 181 5.235186 TGTTTATAGTCGTCGCTAGGTAGTC 59.765 44.000 0.00 0.00 0.00 2.59
181 182 3.749665 ATAGTCGTCGCTAGGTAGTCT 57.250 47.619 0.00 0.00 0.00 3.24
182 183 4.862902 ATAGTCGTCGCTAGGTAGTCTA 57.137 45.455 0.00 0.00 0.00 2.59
183 184 2.820330 AGTCGTCGCTAGGTAGTCTAC 58.180 52.381 0.95 0.95 0.00 2.59
184 185 1.520590 GTCGTCGCTAGGTAGTCTACG 59.479 57.143 3.92 0.00 0.00 3.51
185 186 0.857935 CGTCGCTAGGTAGTCTACGG 59.142 60.000 3.92 0.00 0.00 4.02
186 187 1.536922 CGTCGCTAGGTAGTCTACGGA 60.537 57.143 3.92 0.00 0.00 4.69
187 188 2.765122 GTCGCTAGGTAGTCTACGGAT 58.235 52.381 3.92 0.00 0.00 4.18
188 189 2.736192 GTCGCTAGGTAGTCTACGGATC 59.264 54.545 3.92 0.00 0.00 3.36
189 190 2.632028 TCGCTAGGTAGTCTACGGATCT 59.368 50.000 3.92 0.00 0.00 2.75
190 191 2.737783 CGCTAGGTAGTCTACGGATCTG 59.262 54.545 0.00 0.00 0.00 2.90
191 192 3.554544 CGCTAGGTAGTCTACGGATCTGA 60.555 52.174 9.00 0.00 0.00 3.27
192 193 4.387598 GCTAGGTAGTCTACGGATCTGAA 58.612 47.826 9.00 0.00 0.00 3.02
193 194 5.005094 GCTAGGTAGTCTACGGATCTGAAT 58.995 45.833 9.00 0.00 0.00 2.57
194 195 5.106475 GCTAGGTAGTCTACGGATCTGAATG 60.106 48.000 9.00 0.00 0.00 2.67
195 196 4.794334 AGGTAGTCTACGGATCTGAATGT 58.206 43.478 9.00 0.00 0.00 2.71
196 197 5.938279 AGGTAGTCTACGGATCTGAATGTA 58.062 41.667 9.00 0.00 0.00 2.29
197 198 6.363065 AGGTAGTCTACGGATCTGAATGTAA 58.637 40.000 9.00 0.00 0.00 2.41
198 199 6.832384 AGGTAGTCTACGGATCTGAATGTAAA 59.168 38.462 9.00 0.00 0.00 2.01
199 200 7.506261 AGGTAGTCTACGGATCTGAATGTAAAT 59.494 37.037 9.00 0.00 0.00 1.40
200 201 8.142551 GGTAGTCTACGGATCTGAATGTAAATT 58.857 37.037 9.00 0.00 0.00 1.82
201 202 9.530633 GTAGTCTACGGATCTGAATGTAAATTT 57.469 33.333 9.00 0.00 0.00 1.82
228 229 8.905103 ATAATTTATGGTGTTCGTTTTACTGC 57.095 30.769 0.00 0.00 0.00 4.40
229 230 6.569179 ATTTATGGTGTTCGTTTTACTGCT 57.431 33.333 0.00 0.00 0.00 4.24
230 231 7.675962 ATTTATGGTGTTCGTTTTACTGCTA 57.324 32.000 0.00 0.00 0.00 3.49
231 232 7.675962 TTTATGGTGTTCGTTTTACTGCTAT 57.324 32.000 0.00 0.00 0.00 2.97
232 233 5.545658 ATGGTGTTCGTTTTACTGCTATG 57.454 39.130 0.00 0.00 0.00 2.23
233 234 4.633175 TGGTGTTCGTTTTACTGCTATGA 58.367 39.130 0.00 0.00 0.00 2.15
234 235 5.242434 TGGTGTTCGTTTTACTGCTATGAT 58.758 37.500 0.00 0.00 0.00 2.45
235 236 5.703592 TGGTGTTCGTTTTACTGCTATGATT 59.296 36.000 0.00 0.00 0.00 2.57
236 237 6.021596 GGTGTTCGTTTTACTGCTATGATTG 58.978 40.000 0.00 0.00 0.00 2.67
237 238 6.128391 GGTGTTCGTTTTACTGCTATGATTGA 60.128 38.462 0.00 0.00 0.00 2.57
238 239 7.295201 GTGTTCGTTTTACTGCTATGATTGAA 58.705 34.615 0.00 0.00 0.00 2.69
239 240 7.478667 GTGTTCGTTTTACTGCTATGATTGAAG 59.521 37.037 0.00 0.00 0.00 3.02
240 241 7.386573 TGTTCGTTTTACTGCTATGATTGAAGA 59.613 33.333 0.00 0.00 0.00 2.87
241 242 8.391106 GTTCGTTTTACTGCTATGATTGAAGAT 58.609 33.333 0.00 0.00 0.00 2.40
242 243 7.909267 TCGTTTTACTGCTATGATTGAAGATG 58.091 34.615 0.00 0.00 0.00 2.90
243 244 7.763985 TCGTTTTACTGCTATGATTGAAGATGA 59.236 33.333 0.00 0.00 0.00 2.92
244 245 8.390354 CGTTTTACTGCTATGATTGAAGATGAA 58.610 33.333 0.00 0.00 0.00 2.57
249 250 8.830201 ACTGCTATGATTGAAGATGAATAGAC 57.170 34.615 0.00 0.00 0.00 2.59
250 251 8.649591 ACTGCTATGATTGAAGATGAATAGACT 58.350 33.333 0.00 0.00 0.00 3.24
251 252 9.491675 CTGCTATGATTGAAGATGAATAGACTT 57.508 33.333 0.00 0.00 0.00 3.01
252 253 9.269453 TGCTATGATTGAAGATGAATAGACTTG 57.731 33.333 0.00 0.00 0.00 3.16
253 254 9.486497 GCTATGATTGAAGATGAATAGACTTGA 57.514 33.333 0.00 0.00 0.00 3.02
293 294 8.704849 TTTTTAGAAAGAAATGATCTGGTGGA 57.295 30.769 0.00 0.00 38.79 4.02
294 295 7.928307 TTTAGAAAGAAATGATCTGGTGGAG 57.072 36.000 0.00 0.00 38.79 3.86
295 296 4.853007 AGAAAGAAATGATCTGGTGGAGG 58.147 43.478 0.00 0.00 38.79 4.30
296 297 4.537688 AGAAAGAAATGATCTGGTGGAGGA 59.462 41.667 0.00 0.00 38.79 3.71
297 298 4.500499 AAGAAATGATCTGGTGGAGGAG 57.500 45.455 0.00 0.00 38.79 3.69
298 299 3.458831 AGAAATGATCTGGTGGAGGAGT 58.541 45.455 0.00 0.00 36.88 3.85
299 300 3.848975 AGAAATGATCTGGTGGAGGAGTT 59.151 43.478 0.00 0.00 36.88 3.01
300 301 4.290722 AGAAATGATCTGGTGGAGGAGTTT 59.709 41.667 0.00 0.00 36.88 2.66
301 302 4.664688 AATGATCTGGTGGAGGAGTTTT 57.335 40.909 0.00 0.00 0.00 2.43
302 303 4.664688 ATGATCTGGTGGAGGAGTTTTT 57.335 40.909 0.00 0.00 0.00 1.94
324 325 5.850557 TTTTTGAGAACTTGGAGCAATGA 57.149 34.783 0.00 0.00 0.00 2.57
325 326 6.409524 TTTTTGAGAACTTGGAGCAATGAT 57.590 33.333 0.00 0.00 0.00 2.45
326 327 6.409524 TTTTGAGAACTTGGAGCAATGATT 57.590 33.333 0.00 0.00 0.00 2.57
327 328 7.523293 TTTTGAGAACTTGGAGCAATGATTA 57.477 32.000 0.00 0.00 0.00 1.75
328 329 7.523293 TTTGAGAACTTGGAGCAATGATTAA 57.477 32.000 0.00 0.00 0.00 1.40
329 330 6.500684 TGAGAACTTGGAGCAATGATTAAC 57.499 37.500 0.00 0.00 0.00 2.01
330 331 6.240894 TGAGAACTTGGAGCAATGATTAACT 58.759 36.000 0.00 0.00 0.00 2.24
331 332 7.394016 TGAGAACTTGGAGCAATGATTAACTA 58.606 34.615 0.00 0.00 0.00 2.24
332 333 7.882791 TGAGAACTTGGAGCAATGATTAACTAA 59.117 33.333 0.00 0.00 0.00 2.24
333 334 8.814038 AGAACTTGGAGCAATGATTAACTAAT 57.186 30.769 0.00 0.00 0.00 1.73
334 335 9.247861 AGAACTTGGAGCAATGATTAACTAATT 57.752 29.630 0.00 0.00 0.00 1.40
338 339 9.903682 CTTGGAGCAATGATTAACTAATTATGG 57.096 33.333 0.00 0.00 0.00 2.74
339 340 9.639563 TTGGAGCAATGATTAACTAATTATGGA 57.360 29.630 0.00 0.00 0.00 3.41
340 341 9.288576 TGGAGCAATGATTAACTAATTATGGAG 57.711 33.333 0.00 0.00 0.00 3.86
341 342 9.507329 GGAGCAATGATTAACTAATTATGGAGA 57.493 33.333 0.00 0.00 0.00 3.71
403 412 7.190920 ACAAATTAGTAGCAGTCACAAACTC 57.809 36.000 0.00 0.00 35.45 3.01
410 419 1.594293 AGTCACAAACTCGTGGGCG 60.594 57.895 0.00 0.00 37.50 6.13
430 439 2.415893 CGCTGAATTTGGCCCAACTAAG 60.416 50.000 0.00 0.00 0.00 2.18
431 440 2.675032 GCTGAATTTGGCCCAACTAAGC 60.675 50.000 0.00 0.00 0.00 3.09
432 441 2.827921 CTGAATTTGGCCCAACTAAGCT 59.172 45.455 0.00 0.00 0.00 3.74
434 443 4.411927 TGAATTTGGCCCAACTAAGCTTA 58.588 39.130 5.94 5.94 0.00 3.09
435 444 4.219725 TGAATTTGGCCCAACTAAGCTTAC 59.780 41.667 0.86 0.00 0.00 2.34
436 445 1.816074 TTGGCCCAACTAAGCTTACG 58.184 50.000 0.86 1.91 0.00 3.18
437 446 0.978151 TGGCCCAACTAAGCTTACGA 59.022 50.000 0.86 0.00 0.00 3.43
438 447 1.066430 TGGCCCAACTAAGCTTACGAG 60.066 52.381 0.86 0.00 0.00 4.18
448 457 2.494677 GCTTACGAGCCTCCAGAGA 58.505 57.895 0.00 0.00 43.29 3.10
449 458 0.383949 GCTTACGAGCCTCCAGAGAG 59.616 60.000 0.00 0.00 43.29 3.20
450 459 1.757682 CTTACGAGCCTCCAGAGAGT 58.242 55.000 0.00 0.00 38.58 3.24
460 482 0.609406 TCCAGAGAGTCACGGACCAG 60.609 60.000 0.00 0.00 32.18 4.00
463 485 0.402504 AGAGAGTCACGGACCAGTCT 59.597 55.000 0.00 0.00 32.18 3.24
476 498 2.303022 GACCAGTCTCCCATTTCACTCA 59.697 50.000 0.00 0.00 0.00 3.41
478 500 2.038952 CCAGTCTCCCATTTCACTCACA 59.961 50.000 0.00 0.00 0.00 3.58
479 501 3.332919 CAGTCTCCCATTTCACTCACAG 58.667 50.000 0.00 0.00 0.00 3.66
545 575 1.662446 CGTACGCCGTTCACCAACT 60.662 57.895 0.52 0.00 0.00 3.16
654 684 2.765807 CACCGAGCTCCTCCCCAT 60.766 66.667 8.47 0.00 0.00 4.00
867 922 4.803426 CGGCTCTGGCTGTCGACC 62.803 72.222 14.12 0.00 39.80 4.79
1258 1337 2.920912 AGCAGGGGGACGTCGAAA 60.921 61.111 9.92 0.00 0.00 3.46
1347 1433 2.654079 CCTCGTCAGCCAGAGCCTT 61.654 63.158 0.00 0.00 41.25 4.35
1380 1466 0.469494 TCTGCAGCTCTGTTGTGGAA 59.531 50.000 9.47 0.00 0.00 3.53
1496 1582 1.006998 TGATGCCCCCAAGCTACATTT 59.993 47.619 0.00 0.00 0.00 2.32
1497 1583 1.683385 GATGCCCCCAAGCTACATTTC 59.317 52.381 0.00 0.00 0.00 2.17
1511 1597 5.420104 AGCTACATTTCTTTGGATTCTTGGG 59.580 40.000 0.00 0.00 0.00 4.12
1590 1703 2.621763 CAGTTGTCACTGTGGGAGC 58.378 57.895 8.11 0.00 44.96 4.70
1774 1887 0.604073 TTCCCAATGTCGTGCGACTA 59.396 50.000 22.54 11.49 44.80 2.59
1816 1929 7.916450 TCCACCAATTCAAGTTTTAGTTTTACG 59.084 33.333 0.00 0.00 0.00 3.18
1956 2184 2.093890 TGCCATTCATTGTCAGCGATT 58.906 42.857 0.00 0.00 0.00 3.34
2292 2573 2.513753 TCACTGGCAATTCCATTTCGT 58.486 42.857 0.00 0.00 45.50 3.85
2322 2617 1.135315 TCCGAAACGCTACGCAATAGT 60.135 47.619 0.00 0.00 32.90 2.12
2359 2654 0.034059 GCGGCAGCTAGTACATGGAT 59.966 55.000 0.00 0.00 41.01 3.41
2534 2835 6.631962 TGGTTCCAAATGAAAACTTAAACGT 58.368 32.000 0.00 0.00 33.94 3.99
2577 2878 3.974719 TCAGGTAATTTTGGCCATAGCA 58.025 40.909 6.09 0.00 42.56 3.49
2632 2933 4.626081 AGCTGCACTTTCGCGGGT 62.626 61.111 6.13 0.00 43.96 5.28
2644 2945 4.142687 ACTTTCGCGGGTGATTTTAATCTG 60.143 41.667 6.13 0.00 36.39 2.90
2841 3154 1.536709 GGTTGTTGGCACTTTCTGCTG 60.537 52.381 0.00 0.00 46.25 4.41
3171 3498 9.362539 AGATTATTTGTTCTGATTGATTTGCAC 57.637 29.630 0.00 0.00 0.00 4.57
3243 3572 3.149196 TCTGCTGTGAAAAGTGAATCCC 58.851 45.455 0.00 0.00 0.00 3.85
3283 3612 5.534654 AGCAACACATGTTAAGGCTTTCTTA 59.465 36.000 4.45 0.00 32.96 2.10
3328 3657 7.147479 CCTCCCTCAGTTTCTCTCCAATTATTA 60.147 40.741 0.00 0.00 0.00 0.98
3703 4032 1.821216 TTTCATGCGAGGACCCTTTC 58.179 50.000 0.00 0.00 0.00 2.62
3724 4053 0.873054 CAACAGTGGAGAGCAGCTTG 59.127 55.000 0.00 0.00 0.00 4.01
3782 4112 2.386661 AGTAGGAAACAGGCATGACG 57.613 50.000 4.84 0.00 0.00 4.35
3783 4113 0.727398 GTAGGAAACAGGCATGACGC 59.273 55.000 4.84 0.00 41.28 5.19
3840 4170 4.558226 TGGATGTGCTGAACTATGAACT 57.442 40.909 0.00 0.00 0.00 3.01
3955 4307 4.627035 GGAATTGGTATTTTGCTTGCTGTC 59.373 41.667 0.00 0.00 0.00 3.51
3966 4318 1.399791 GCTTGCTGTCTAATCTGTGCC 59.600 52.381 0.00 0.00 0.00 5.01
3984 4336 3.440522 GTGCCATCAGTTTCCCTAAGTTC 59.559 47.826 0.00 0.00 0.00 3.01
3999 4351 4.702131 CCTAAGTTCCCTCCTTCAAATGTG 59.298 45.833 0.00 0.00 0.00 3.21
4007 4359 3.004734 CCTCCTTCAAATGTGTGTTCCAC 59.995 47.826 0.00 0.00 44.78 4.02
4052 4404 2.686915 CAGATTTGCATCTTCTCACCCC 59.313 50.000 0.00 0.00 37.71 4.95
4067 4419 0.476771 ACCCCGGTTGAGTTGACAAT 59.523 50.000 0.00 0.00 32.36 2.71
4068 4420 1.165270 CCCCGGTTGAGTTGACAATC 58.835 55.000 0.00 0.00 32.36 2.67
4069 4421 1.544537 CCCCGGTTGAGTTGACAATCA 60.545 52.381 0.00 0.00 31.19 2.57
4070 4422 1.806542 CCCGGTTGAGTTGACAATCAG 59.193 52.381 0.00 0.00 31.19 2.90
4071 4423 2.494059 CCGGTTGAGTTGACAATCAGT 58.506 47.619 0.00 0.00 31.19 3.41
4072 4424 2.878406 CCGGTTGAGTTGACAATCAGTT 59.122 45.455 0.00 0.00 31.19 3.16
4073 4425 3.058914 CCGGTTGAGTTGACAATCAGTTC 60.059 47.826 0.00 0.00 31.19 3.01
4074 4426 3.559655 CGGTTGAGTTGACAATCAGTTCA 59.440 43.478 0.00 0.00 31.19 3.18
4076 4428 5.448496 CGGTTGAGTTGACAATCAGTTCAAA 60.448 40.000 7.99 0.00 34.60 2.69
4077 4429 5.973565 GGTTGAGTTGACAATCAGTTCAAAG 59.026 40.000 7.99 0.00 34.60 2.77
4080 4432 8.559536 GTTGAGTTGACAATCAGTTCAAAGATA 58.440 33.333 7.99 0.00 34.60 1.98
4081 4433 8.853077 TGAGTTGACAATCAGTTCAAAGATAT 57.147 30.769 0.00 0.00 0.00 1.63
4082 4434 9.942850 TGAGTTGACAATCAGTTCAAAGATATA 57.057 29.630 0.00 0.00 0.00 0.86
4087 4439 9.346005 TGACAATCAGTTCAAAGATATATGCAT 57.654 29.630 3.79 3.79 0.00 3.96
4088 4440 9.608617 GACAATCAGTTCAAAGATATATGCATG 57.391 33.333 10.16 0.00 0.00 4.06
4089 4441 9.128404 ACAATCAGTTCAAAGATATATGCATGT 57.872 29.630 10.16 5.06 0.00 3.21
4104 4456 9.708092 ATATATGCATGTATGATCATAGAGTGC 57.292 33.333 25.44 25.44 0.00 4.40
4105 4457 5.479124 TGCATGTATGATCATAGAGTGCT 57.521 39.130 28.66 11.14 30.37 4.40
4106 4458 5.476614 TGCATGTATGATCATAGAGTGCTC 58.523 41.667 28.66 14.88 30.37 4.26
4107 4459 4.869297 GCATGTATGATCATAGAGTGCTCC 59.131 45.833 25.16 11.72 0.00 4.70
4108 4460 4.773323 TGTATGATCATAGAGTGCTCCG 57.227 45.455 15.83 0.00 0.00 4.63
4109 4461 4.398319 TGTATGATCATAGAGTGCTCCGA 58.602 43.478 15.83 0.00 0.00 4.55
4111 4463 3.930634 TGATCATAGAGTGCTCCGATG 57.069 47.619 0.00 1.26 0.00 3.84
4112 4464 3.490348 TGATCATAGAGTGCTCCGATGA 58.510 45.455 13.39 13.39 37.08 2.92
4113 4465 3.891366 TGATCATAGAGTGCTCCGATGAA 59.109 43.478 14.42 2.27 36.59 2.57
4114 4466 4.525874 TGATCATAGAGTGCTCCGATGAAT 59.474 41.667 14.42 7.10 36.59 2.57
4115 4467 4.511617 TCATAGAGTGCTCCGATGAATC 57.488 45.455 10.26 0.00 32.69 2.52
4116 4468 3.891366 TCATAGAGTGCTCCGATGAATCA 59.109 43.478 10.26 0.00 32.69 2.57
4119 4471 2.234661 AGAGTGCTCCGATGAATCACAA 59.765 45.455 0.00 0.00 30.61 3.33
4120 4472 2.606725 GAGTGCTCCGATGAATCACAAG 59.393 50.000 0.00 0.00 30.61 3.16
4121 4473 2.027745 AGTGCTCCGATGAATCACAAGT 60.028 45.455 0.00 0.00 30.61 3.16
4123 4475 3.553511 GTGCTCCGATGAATCACAAGTAG 59.446 47.826 0.00 0.00 0.00 2.57
4125 4477 4.081697 TGCTCCGATGAATCACAAGTAGAA 60.082 41.667 0.00 0.00 0.00 2.10
4126 4478 5.053145 GCTCCGATGAATCACAAGTAGAAT 58.947 41.667 0.00 0.00 0.00 2.40
4128 4480 6.701841 GCTCCGATGAATCACAAGTAGAATTA 59.298 38.462 0.00 0.00 0.00 1.40
4129 4481 7.095857 GCTCCGATGAATCACAAGTAGAATTAG 60.096 40.741 0.00 0.00 0.00 1.73
4137 4546 5.178797 TCACAAGTAGAATTAGAGCCTTGC 58.821 41.667 0.00 0.00 34.18 4.01
4157 4567 1.272648 CCATTCCTTTCAGGCCTTCCA 60.273 52.381 0.00 0.00 34.61 3.53
4218 4628 8.784043 ACTGTGAATCACAAGTAGAATTTTACC 58.216 33.333 17.41 0.00 44.08 2.85
4226 4636 8.044908 TCACAAGTAGAATTTTACCTATGGGTC 58.955 37.037 2.96 0.00 45.98 4.46
4233 4643 7.231467 AGAATTTTACCTATGGGTCGCATATT 58.769 34.615 2.96 0.00 45.98 1.28
4237 4647 2.703536 ACCTATGGGTCGCATATTCACA 59.296 45.455 9.81 0.00 43.38 3.58
4263 4673 4.504858 CTGTCCCTTTTATCTTGTAGCGT 58.495 43.478 0.00 0.00 0.00 5.07
4270 4680 8.259411 TCCCTTTTATCTTGTAGCGTTATGTTA 58.741 33.333 0.00 0.00 0.00 2.41
4271 4681 8.548721 CCCTTTTATCTTGTAGCGTTATGTTAG 58.451 37.037 0.00 0.00 0.00 2.34
4272 4682 9.309516 CCTTTTATCTTGTAGCGTTATGTTAGA 57.690 33.333 0.00 0.00 0.00 2.10
4340 4750 7.662258 TGTGTGCTTATCTCCTAGTACTAGATC 59.338 40.741 28.07 7.67 35.21 2.75
4357 4767 3.296854 AGATCCTATGGTCGTGTGCTTA 58.703 45.455 0.00 0.00 0.00 3.09
4373 4783 6.183360 CGTGTGCTTACCTCTTACAAATACAG 60.183 42.308 0.00 0.00 0.00 2.74
4381 4791 6.407202 ACCTCTTACAAATACAGCTGGTAAG 58.593 40.000 23.28 23.28 41.24 2.34
4382 4792 6.212791 ACCTCTTACAAATACAGCTGGTAAGA 59.787 38.462 26.86 26.86 44.38 2.10
4384 4794 6.106673 TCTTACAAATACAGCTGGTAAGAGC 58.893 40.000 25.83 0.00 42.76 4.09
4385 4795 3.262420 ACAAATACAGCTGGTAAGAGCG 58.738 45.455 19.93 0.97 44.24 5.03
4386 4796 1.941325 AATACAGCTGGTAAGAGCGC 58.059 50.000 19.93 0.00 44.24 5.92
4387 4797 0.105039 ATACAGCTGGTAAGAGCGCC 59.895 55.000 19.93 0.00 44.24 6.53
4388 4798 2.279502 TACAGCTGGTAAGAGCGCCG 62.280 60.000 19.93 0.00 44.24 6.46
4389 4799 4.148825 AGCTGGTAAGAGCGCCGG 62.149 66.667 2.29 0.00 44.24 6.13
4408 4818 4.697756 CGCCTCAAACCGGCCTCA 62.698 66.667 0.00 0.00 44.73 3.86
4409 4819 2.044946 GCCTCAAACCGGCCTCAT 60.045 61.111 0.00 0.00 41.73 2.90
4410 4820 1.223487 GCCTCAAACCGGCCTCATA 59.777 57.895 0.00 0.00 41.73 2.15
4411 4821 1.095807 GCCTCAAACCGGCCTCATAC 61.096 60.000 0.00 0.00 41.73 2.39
4412 4822 0.810031 CCTCAAACCGGCCTCATACG 60.810 60.000 0.00 0.00 0.00 3.06
4413 4823 1.429148 CTCAAACCGGCCTCATACGC 61.429 60.000 0.00 0.00 0.00 4.42
4414 4824 2.124860 AAACCGGCCTCATACGCC 60.125 61.111 0.00 0.00 43.38 5.68
4415 4825 3.692370 AAACCGGCCTCATACGCCC 62.692 63.158 0.00 0.00 43.98 6.13
4439 4849 3.292159 GCCGCCCGGACACTTTTT 61.292 61.111 11.48 0.00 37.50 1.94
4457 4867 2.358322 TTTTGACTCAGACAACCCCC 57.642 50.000 0.00 0.00 0.00 5.40
4458 4868 1.518367 TTTGACTCAGACAACCCCCT 58.482 50.000 0.00 0.00 0.00 4.79
4459 4869 1.056660 TTGACTCAGACAACCCCCTC 58.943 55.000 0.00 0.00 0.00 4.30
4460 4870 0.105194 TGACTCAGACAACCCCCTCA 60.105 55.000 0.00 0.00 0.00 3.86
4461 4871 1.056660 GACTCAGACAACCCCCTCAA 58.943 55.000 0.00 0.00 0.00 3.02
4462 4872 1.420138 GACTCAGACAACCCCCTCAAA 59.580 52.381 0.00 0.00 0.00 2.69
4463 4873 1.143073 ACTCAGACAACCCCCTCAAAC 59.857 52.381 0.00 0.00 0.00 2.93
4464 4874 0.107831 TCAGACAACCCCCTCAAACG 59.892 55.000 0.00 0.00 0.00 3.60
4465 4875 1.228154 AGACAACCCCCTCAAACGC 60.228 57.895 0.00 0.00 0.00 4.84
4466 4876 2.203437 ACAACCCCCTCAAACGCC 60.203 61.111 0.00 0.00 0.00 5.68
4467 4877 2.989253 CAACCCCCTCAAACGCCC 60.989 66.667 0.00 0.00 0.00 6.13
4468 4878 4.653888 AACCCCCTCAAACGCCCG 62.654 66.667 0.00 0.00 0.00 6.13
4472 4882 4.016706 CCCTCAAACGCCCGGACT 62.017 66.667 0.73 0.00 0.00 3.85
4473 4883 2.742372 CCTCAAACGCCCGGACTG 60.742 66.667 0.73 0.00 0.00 3.51
4474 4884 2.342279 CTCAAACGCCCGGACTGA 59.658 61.111 0.73 0.00 0.00 3.41
4475 4885 2.027625 CTCAAACGCCCGGACTGAC 61.028 63.158 0.73 0.00 0.00 3.51
4476 4886 2.030562 CAAACGCCCGGACTGACT 59.969 61.111 0.73 0.00 0.00 3.41
4477 4887 2.030562 AAACGCCCGGACTGACTG 59.969 61.111 0.73 0.00 0.00 3.51
4478 4888 2.504274 AAACGCCCGGACTGACTGA 61.504 57.895 0.73 0.00 0.00 3.41
4479 4889 2.710724 AAACGCCCGGACTGACTGAC 62.711 60.000 0.73 0.00 0.00 3.51
4480 4890 3.680786 CGCCCGGACTGACTGACA 61.681 66.667 0.73 0.00 0.00 3.58
4481 4891 2.048127 GCCCGGACTGACTGACAC 60.048 66.667 0.73 0.00 0.00 3.67
4482 4892 2.657237 CCCGGACTGACTGACACC 59.343 66.667 0.73 0.00 0.00 4.16
4483 4893 2.657237 CCGGACTGACTGACACCC 59.343 66.667 0.00 0.00 0.00 4.61
4484 4894 2.657237 CGGACTGACTGACACCCC 59.343 66.667 0.00 0.00 0.00 4.95
4485 4895 1.908793 CGGACTGACTGACACCCCT 60.909 63.158 0.00 0.00 0.00 4.79
4486 4896 1.472662 CGGACTGACTGACACCCCTT 61.473 60.000 0.00 0.00 0.00 3.95
4487 4897 1.640917 GGACTGACTGACACCCCTTA 58.359 55.000 0.00 0.00 0.00 2.69
4488 4898 2.188817 GGACTGACTGACACCCCTTAT 58.811 52.381 0.00 0.00 0.00 1.73
4489 4899 3.371965 GGACTGACTGACACCCCTTATA 58.628 50.000 0.00 0.00 0.00 0.98
4490 4900 3.967987 GGACTGACTGACACCCCTTATAT 59.032 47.826 0.00 0.00 0.00 0.86
4491 4901 5.145564 GGACTGACTGACACCCCTTATATA 58.854 45.833 0.00 0.00 0.00 0.86
4492 4902 5.780793 GGACTGACTGACACCCCTTATATAT 59.219 44.000 0.00 0.00 0.00 0.86
4493 4903 6.071278 GGACTGACTGACACCCCTTATATATC 60.071 46.154 0.00 0.00 0.00 1.63
4494 4904 5.780793 ACTGACTGACACCCCTTATATATCC 59.219 44.000 0.00 0.00 0.00 2.59
4495 4905 4.770531 TGACTGACACCCCTTATATATCCG 59.229 45.833 0.00 0.00 0.00 4.18
4496 4906 4.094476 ACTGACACCCCTTATATATCCGG 58.906 47.826 0.00 0.00 0.00 5.14
4497 4907 2.835764 TGACACCCCTTATATATCCGGC 59.164 50.000 0.00 0.00 0.00 6.13
4498 4908 2.169978 GACACCCCTTATATATCCGGCC 59.830 54.545 0.00 0.00 0.00 6.13
4499 4909 1.489230 CACCCCTTATATATCCGGCCC 59.511 57.143 0.00 0.00 0.00 5.80
4500 4910 1.081513 ACCCCTTATATATCCGGCCCA 59.918 52.381 0.00 0.00 0.00 5.36
4501 4911 2.201830 CCCCTTATATATCCGGCCCAA 58.798 52.381 0.00 0.00 0.00 4.12
4502 4912 2.578940 CCCCTTATATATCCGGCCCAAA 59.421 50.000 0.00 0.00 0.00 3.28
4503 4913 3.204382 CCCCTTATATATCCGGCCCAAAT 59.796 47.826 0.00 0.00 0.00 2.32
4504 4914 4.414182 CCCCTTATATATCCGGCCCAAATA 59.586 45.833 0.00 0.00 0.00 1.40
4505 4915 5.456186 CCCCTTATATATCCGGCCCAAATAG 60.456 48.000 0.00 0.00 0.00 1.73
4506 4916 5.456186 CCCTTATATATCCGGCCCAAATAGG 60.456 48.000 0.00 0.00 37.03 2.57
4863 5273 5.371115 GATCCATTTACTCTCTCCTCTCG 57.629 47.826 0.00 0.00 0.00 4.04
4864 5274 4.237976 TCCATTTACTCTCTCCTCTCGT 57.762 45.455 0.00 0.00 0.00 4.18
4865 5275 4.200874 TCCATTTACTCTCTCCTCTCGTC 58.799 47.826 0.00 0.00 0.00 4.20
4866 5276 4.080243 TCCATTTACTCTCTCCTCTCGTCT 60.080 45.833 0.00 0.00 0.00 4.18
4867 5277 4.642885 CCATTTACTCTCTCCTCTCGTCTT 59.357 45.833 0.00 0.00 0.00 3.01
4868 5278 5.220970 CCATTTACTCTCTCCTCTCGTCTTC 60.221 48.000 0.00 0.00 0.00 2.87
4869 5279 2.413310 ACTCTCTCCTCTCGTCTTCC 57.587 55.000 0.00 0.00 0.00 3.46
4870 5280 1.913419 ACTCTCTCCTCTCGTCTTCCT 59.087 52.381 0.00 0.00 0.00 3.36
4871 5281 2.093128 ACTCTCTCCTCTCGTCTTCCTC 60.093 54.545 0.00 0.00 0.00 3.71
4872 5282 1.210967 TCTCTCCTCTCGTCTTCCTCC 59.789 57.143 0.00 0.00 0.00 4.30
4873 5283 1.211949 CTCTCCTCTCGTCTTCCTCCT 59.788 57.143 0.00 0.00 0.00 3.69
4874 5284 1.210967 TCTCCTCTCGTCTTCCTCCTC 59.789 57.143 0.00 0.00 0.00 3.71
4875 5285 0.256464 TCCTCTCGTCTTCCTCCTCC 59.744 60.000 0.00 0.00 0.00 4.30
4876 5286 0.033991 CCTCTCGTCTTCCTCCTCCA 60.034 60.000 0.00 0.00 0.00 3.86
4877 5287 1.099689 CTCTCGTCTTCCTCCTCCAC 58.900 60.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.967779 TCCGACCTGAAGACACATGAA 59.032 47.619 0.00 0.00 0.00 2.57
1 2 1.627864 TCCGACCTGAAGACACATGA 58.372 50.000 0.00 0.00 0.00 3.07
2 3 2.544685 GATCCGACCTGAAGACACATG 58.455 52.381 0.00 0.00 0.00 3.21
3 4 1.482593 GGATCCGACCTGAAGACACAT 59.517 52.381 0.00 0.00 0.00 3.21
4 5 0.895530 GGATCCGACCTGAAGACACA 59.104 55.000 0.00 0.00 0.00 3.72
9 10 3.334583 TGAAAAGGATCCGACCTGAAG 57.665 47.619 5.98 0.00 40.49 3.02
10 11 3.678806 CGATGAAAAGGATCCGACCTGAA 60.679 47.826 5.98 0.00 40.49 3.02
11 12 2.159099 CGATGAAAAGGATCCGACCTGA 60.159 50.000 5.98 0.00 40.49 3.86
12 13 2.205074 CGATGAAAAGGATCCGACCTG 58.795 52.381 5.98 0.00 40.49 4.00
13 14 1.139058 CCGATGAAAAGGATCCGACCT 59.861 52.381 5.98 0.00 42.69 3.85
14 15 1.583054 CCGATGAAAAGGATCCGACC 58.417 55.000 5.98 0.00 0.00 4.79
15 16 0.938008 GCCGATGAAAAGGATCCGAC 59.062 55.000 5.98 0.00 0.00 4.79
16 17 0.539518 TGCCGATGAAAAGGATCCGA 59.460 50.000 5.98 0.00 0.00 4.55
17 18 0.657840 GTGCCGATGAAAAGGATCCG 59.342 55.000 5.98 0.00 0.00 4.18
18 19 1.025041 GGTGCCGATGAAAAGGATCC 58.975 55.000 2.48 2.48 0.00 3.36
19 20 0.657840 CGGTGCCGATGAAAAGGATC 59.342 55.000 4.35 0.00 42.83 3.36
20 21 0.748005 CCGGTGCCGATGAAAAGGAT 60.748 55.000 12.71 0.00 42.83 3.24
21 22 1.376683 CCGGTGCCGATGAAAAGGA 60.377 57.895 12.71 0.00 42.83 3.36
22 23 1.241315 AACCGGTGCCGATGAAAAGG 61.241 55.000 8.52 0.00 42.83 3.11
23 24 0.109781 CAACCGGTGCCGATGAAAAG 60.110 55.000 8.52 0.00 42.83 2.27
24 25 1.953017 CAACCGGTGCCGATGAAAA 59.047 52.632 8.52 0.00 42.83 2.29
25 26 3.661911 CAACCGGTGCCGATGAAA 58.338 55.556 8.52 0.00 42.83 2.69
34 35 3.663176 CCAGTGCAGCAACCGGTG 61.663 66.667 8.52 3.35 43.71 4.94
35 36 4.189580 ACCAGTGCAGCAACCGGT 62.190 61.111 0.00 0.00 0.00 5.28
36 37 3.663176 CACCAGTGCAGCAACCGG 61.663 66.667 0.00 0.00 0.00 5.28
37 38 2.901840 ACACCAGTGCAGCAACCG 60.902 61.111 0.00 0.00 0.00 4.44
38 39 2.723746 CACACCAGTGCAGCAACC 59.276 61.111 0.00 0.00 39.21 3.77
47 48 1.064314 TGCTAAACCCAACACACCAGT 60.064 47.619 0.00 0.00 0.00 4.00
48 49 1.686355 TGCTAAACCCAACACACCAG 58.314 50.000 0.00 0.00 0.00 4.00
49 50 1.959985 CATGCTAAACCCAACACACCA 59.040 47.619 0.00 0.00 0.00 4.17
50 51 2.235016 TCATGCTAAACCCAACACACC 58.765 47.619 0.00 0.00 0.00 4.16
51 52 3.505680 TCATCATGCTAAACCCAACACAC 59.494 43.478 0.00 0.00 0.00 3.82
52 53 3.505680 GTCATCATGCTAAACCCAACACA 59.494 43.478 0.00 0.00 0.00 3.72
53 54 3.758554 AGTCATCATGCTAAACCCAACAC 59.241 43.478 0.00 0.00 0.00 3.32
54 55 4.032960 AGTCATCATGCTAAACCCAACA 57.967 40.909 0.00 0.00 0.00 3.33
55 56 4.702131 AGAAGTCATCATGCTAAACCCAAC 59.298 41.667 0.00 0.00 0.00 3.77
56 57 4.922206 AGAAGTCATCATGCTAAACCCAA 58.078 39.130 0.00 0.00 0.00 4.12
57 58 4.517285 GAGAAGTCATCATGCTAAACCCA 58.483 43.478 0.00 0.00 0.00 4.51
58 59 3.557595 CGAGAAGTCATCATGCTAAACCC 59.442 47.826 0.00 0.00 0.00 4.11
59 60 4.268884 GTCGAGAAGTCATCATGCTAAACC 59.731 45.833 0.00 0.00 0.00 3.27
60 61 5.005203 CAGTCGAGAAGTCATCATGCTAAAC 59.995 44.000 0.00 0.00 0.00 2.01
61 62 5.105063 CAGTCGAGAAGTCATCATGCTAAA 58.895 41.667 0.00 0.00 0.00 1.85
62 63 4.158579 ACAGTCGAGAAGTCATCATGCTAA 59.841 41.667 0.00 0.00 0.00 3.09
63 64 3.696548 ACAGTCGAGAAGTCATCATGCTA 59.303 43.478 0.00 0.00 0.00 3.49
64 65 2.495270 ACAGTCGAGAAGTCATCATGCT 59.505 45.455 0.00 0.00 0.00 3.79
65 66 2.857152 GACAGTCGAGAAGTCATCATGC 59.143 50.000 6.88 0.00 32.68 4.06
66 67 4.368874 AGACAGTCGAGAAGTCATCATG 57.631 45.455 12.59 0.00 34.80 3.07
67 68 4.142271 GGAAGACAGTCGAGAAGTCATCAT 60.142 45.833 14.79 1.59 33.14 2.45
68 69 3.191581 GGAAGACAGTCGAGAAGTCATCA 59.808 47.826 14.79 0.00 33.14 3.07
69 70 3.191581 TGGAAGACAGTCGAGAAGTCATC 59.808 47.826 12.59 10.19 34.80 2.92
70 71 3.057174 GTGGAAGACAGTCGAGAAGTCAT 60.057 47.826 12.59 2.75 34.80 3.06
71 72 2.293677 GTGGAAGACAGTCGAGAAGTCA 59.706 50.000 12.59 0.00 34.80 3.41
72 73 2.293677 TGTGGAAGACAGTCGAGAAGTC 59.706 50.000 0.00 4.19 0.00 3.01
73 74 2.307768 TGTGGAAGACAGTCGAGAAGT 58.692 47.619 0.00 0.00 0.00 3.01
74 75 3.004839 TCTTGTGGAAGACAGTCGAGAAG 59.995 47.826 0.00 0.00 35.44 2.85
75 76 2.956333 TCTTGTGGAAGACAGTCGAGAA 59.044 45.455 0.00 0.00 35.44 2.87
76 77 2.583143 TCTTGTGGAAGACAGTCGAGA 58.417 47.619 0.00 0.00 35.44 4.04
77 78 3.371102 TTCTTGTGGAAGACAGTCGAG 57.629 47.619 0.00 0.00 37.97 4.04
87 88 2.430332 CAGGGCAAAACTTCTTGTGGAA 59.570 45.455 0.00 0.00 0.00 3.53
88 89 2.031120 CAGGGCAAAACTTCTTGTGGA 58.969 47.619 0.00 0.00 0.00 4.02
89 90 1.538849 GCAGGGCAAAACTTCTTGTGG 60.539 52.381 0.00 0.00 0.00 4.17
90 91 1.410153 AGCAGGGCAAAACTTCTTGTG 59.590 47.619 0.00 0.00 0.00 3.33
91 92 1.683385 GAGCAGGGCAAAACTTCTTGT 59.317 47.619 0.00 0.00 0.00 3.16
92 93 1.959282 AGAGCAGGGCAAAACTTCTTG 59.041 47.619 0.00 0.00 0.00 3.02
93 94 1.959282 CAGAGCAGGGCAAAACTTCTT 59.041 47.619 0.00 0.00 0.00 2.52
94 95 1.613836 CAGAGCAGGGCAAAACTTCT 58.386 50.000 0.00 0.00 0.00 2.85
95 96 0.600057 CCAGAGCAGGGCAAAACTTC 59.400 55.000 0.00 0.00 0.00 3.01
96 97 2.737503 CCAGAGCAGGGCAAAACTT 58.262 52.632 0.00 0.00 0.00 2.66
97 98 4.507969 CCAGAGCAGGGCAAAACT 57.492 55.556 0.00 0.00 0.00 2.66
105 106 3.847602 CTCCCTCGCCAGAGCAGG 61.848 72.222 0.00 0.00 43.05 4.85
106 107 3.847602 CCTCCCTCGCCAGAGCAG 61.848 72.222 0.00 0.00 43.05 4.24
109 110 2.837291 CTCCCTCCCTCGCCAGAG 60.837 72.222 0.00 0.00 43.98 3.35
110 111 4.465446 CCTCCCTCCCTCGCCAGA 62.465 72.222 0.00 0.00 0.00 3.86
113 114 4.565850 ATCCCTCCCTCCCTCGCC 62.566 72.222 0.00 0.00 0.00 5.54
114 115 3.237741 CATCCCTCCCTCCCTCGC 61.238 72.222 0.00 0.00 0.00 5.03
115 116 1.157276 ATCATCCCTCCCTCCCTCG 59.843 63.158 0.00 0.00 0.00 4.63
116 117 0.192064 TCATCATCCCTCCCTCCCTC 59.808 60.000 0.00 0.00 0.00 4.30
117 118 0.104725 GTCATCATCCCTCCCTCCCT 60.105 60.000 0.00 0.00 0.00 4.20
118 119 1.476007 CGTCATCATCCCTCCCTCCC 61.476 65.000 0.00 0.00 0.00 4.30
119 120 0.470080 TCGTCATCATCCCTCCCTCC 60.470 60.000 0.00 0.00 0.00 4.30
120 121 0.676736 GTCGTCATCATCCCTCCCTC 59.323 60.000 0.00 0.00 0.00 4.30
121 122 0.032117 TGTCGTCATCATCCCTCCCT 60.032 55.000 0.00 0.00 0.00 4.20
122 123 0.105039 GTGTCGTCATCATCCCTCCC 59.895 60.000 0.00 0.00 0.00 4.30
123 124 0.249073 CGTGTCGTCATCATCCCTCC 60.249 60.000 0.00 0.00 0.00 4.30
124 125 0.456221 ACGTGTCGTCATCATCCCTC 59.544 55.000 0.00 0.00 33.69 4.30
125 126 2.579878 ACGTGTCGTCATCATCCCT 58.420 52.632 0.00 0.00 33.69 4.20
135 136 1.268899 CTGGAAACTAGGACGTGTCGT 59.731 52.381 0.00 0.57 45.10 4.34
136 137 1.268899 ACTGGAAACTAGGACGTGTCG 59.731 52.381 0.00 0.00 0.00 4.35
137 138 2.035576 ACACTGGAAACTAGGACGTGTC 59.964 50.000 0.00 0.00 29.00 3.67
138 139 2.037144 ACACTGGAAACTAGGACGTGT 58.963 47.619 0.00 0.00 0.00 4.49
139 140 2.814280 ACACTGGAAACTAGGACGTG 57.186 50.000 0.00 0.00 0.00 4.49
140 141 3.832615 AAACACTGGAAACTAGGACGT 57.167 42.857 0.00 0.00 0.00 4.34
141 142 6.628185 ACTATAAACACTGGAAACTAGGACG 58.372 40.000 0.00 0.00 0.00 4.79
142 143 6.750963 CGACTATAAACACTGGAAACTAGGAC 59.249 42.308 0.00 0.00 0.00 3.85
143 144 6.435277 ACGACTATAAACACTGGAAACTAGGA 59.565 38.462 0.00 0.00 0.00 2.94
144 145 6.628185 ACGACTATAAACACTGGAAACTAGG 58.372 40.000 0.00 0.00 0.00 3.02
145 146 6.468319 CGACGACTATAAACACTGGAAACTAG 59.532 42.308 0.00 0.00 0.00 2.57
146 147 6.317088 CGACGACTATAAACACTGGAAACTA 58.683 40.000 0.00 0.00 0.00 2.24
147 148 5.159209 CGACGACTATAAACACTGGAAACT 58.841 41.667 0.00 0.00 0.00 2.66
148 149 4.201561 GCGACGACTATAAACACTGGAAAC 60.202 45.833 0.00 0.00 0.00 2.78
149 150 3.922240 GCGACGACTATAAACACTGGAAA 59.078 43.478 0.00 0.00 0.00 3.13
150 151 3.192001 AGCGACGACTATAAACACTGGAA 59.808 43.478 0.00 0.00 0.00 3.53
151 152 2.751259 AGCGACGACTATAAACACTGGA 59.249 45.455 0.00 0.00 0.00 3.86
152 153 3.146618 AGCGACGACTATAAACACTGG 57.853 47.619 0.00 0.00 0.00 4.00
153 154 4.201891 ACCTAGCGACGACTATAAACACTG 60.202 45.833 0.00 0.00 0.00 3.66
154 155 3.944015 ACCTAGCGACGACTATAAACACT 59.056 43.478 0.00 0.00 0.00 3.55
155 156 4.284378 ACCTAGCGACGACTATAAACAC 57.716 45.455 0.00 0.00 0.00 3.32
156 157 5.118990 ACTACCTAGCGACGACTATAAACA 58.881 41.667 0.00 0.00 0.00 2.83
157 158 5.465056 AGACTACCTAGCGACGACTATAAAC 59.535 44.000 0.00 0.00 0.00 2.01
158 159 5.605534 AGACTACCTAGCGACGACTATAAA 58.394 41.667 0.00 0.00 0.00 1.40
159 160 5.207110 AGACTACCTAGCGACGACTATAA 57.793 43.478 0.00 0.00 0.00 0.98
160 161 4.862902 AGACTACCTAGCGACGACTATA 57.137 45.455 0.00 0.00 0.00 1.31
161 162 3.749665 AGACTACCTAGCGACGACTAT 57.250 47.619 0.00 0.00 0.00 2.12
162 163 3.549019 CGTAGACTACCTAGCGACGACTA 60.549 52.174 7.05 0.00 33.84 2.59
163 164 2.797792 CGTAGACTACCTAGCGACGACT 60.798 54.545 7.05 0.00 33.84 4.18
164 165 1.520590 CGTAGACTACCTAGCGACGAC 59.479 57.143 7.05 0.00 33.84 4.34
165 166 1.536922 CCGTAGACTACCTAGCGACGA 60.537 57.143 7.05 0.00 33.84 4.20
166 167 0.857935 CCGTAGACTACCTAGCGACG 59.142 60.000 7.05 0.00 32.81 5.12
167 168 2.231215 TCCGTAGACTACCTAGCGAC 57.769 55.000 7.05 0.00 0.00 5.19
168 169 2.632028 AGATCCGTAGACTACCTAGCGA 59.368 50.000 7.05 0.00 0.00 4.93
169 170 2.737783 CAGATCCGTAGACTACCTAGCG 59.262 54.545 7.05 0.00 0.00 4.26
170 171 4.005487 TCAGATCCGTAGACTACCTAGC 57.995 50.000 7.05 0.00 0.00 3.42
171 172 5.998981 ACATTCAGATCCGTAGACTACCTAG 59.001 44.000 7.05 0.00 0.00 3.02
172 173 5.938279 ACATTCAGATCCGTAGACTACCTA 58.062 41.667 7.05 0.00 0.00 3.08
173 174 4.794334 ACATTCAGATCCGTAGACTACCT 58.206 43.478 7.05 0.00 0.00 3.08
174 175 6.630444 TTACATTCAGATCCGTAGACTACC 57.370 41.667 7.05 0.00 0.00 3.18
175 176 9.530633 AAATTTACATTCAGATCCGTAGACTAC 57.469 33.333 2.24 2.24 0.00 2.73
202 203 9.991388 GCAGTAAAACGAACACCATAAATTATA 57.009 29.630 0.00 0.00 0.00 0.98
203 204 8.736244 AGCAGTAAAACGAACACCATAAATTAT 58.264 29.630 0.00 0.00 0.00 1.28
204 205 8.101654 AGCAGTAAAACGAACACCATAAATTA 57.898 30.769 0.00 0.00 0.00 1.40
205 206 6.977213 AGCAGTAAAACGAACACCATAAATT 58.023 32.000 0.00 0.00 0.00 1.82
206 207 6.569179 AGCAGTAAAACGAACACCATAAAT 57.431 33.333 0.00 0.00 0.00 1.40
207 208 7.388224 TCATAGCAGTAAAACGAACACCATAAA 59.612 33.333 0.00 0.00 0.00 1.40
208 209 6.874664 TCATAGCAGTAAAACGAACACCATAA 59.125 34.615 0.00 0.00 0.00 1.90
209 210 6.399743 TCATAGCAGTAAAACGAACACCATA 58.600 36.000 0.00 0.00 0.00 2.74
210 211 5.242434 TCATAGCAGTAAAACGAACACCAT 58.758 37.500 0.00 0.00 0.00 3.55
211 212 4.633175 TCATAGCAGTAAAACGAACACCA 58.367 39.130 0.00 0.00 0.00 4.17
212 213 5.796350 ATCATAGCAGTAAAACGAACACC 57.204 39.130 0.00 0.00 0.00 4.16
213 214 6.827641 TCAATCATAGCAGTAAAACGAACAC 58.172 36.000 0.00 0.00 0.00 3.32
214 215 7.386573 TCTTCAATCATAGCAGTAAAACGAACA 59.613 33.333 0.00 0.00 0.00 3.18
215 216 7.739295 TCTTCAATCATAGCAGTAAAACGAAC 58.261 34.615 0.00 0.00 0.00 3.95
216 217 7.899178 TCTTCAATCATAGCAGTAAAACGAA 57.101 32.000 0.00 0.00 0.00 3.85
217 218 7.763985 TCATCTTCAATCATAGCAGTAAAACGA 59.236 33.333 0.00 0.00 0.00 3.85
218 219 7.909267 TCATCTTCAATCATAGCAGTAAAACG 58.091 34.615 0.00 0.00 0.00 3.60
223 224 9.920133 GTCTATTCATCTTCAATCATAGCAGTA 57.080 33.333 0.00 0.00 0.00 2.74
224 225 8.649591 AGTCTATTCATCTTCAATCATAGCAGT 58.350 33.333 0.00 0.00 0.00 4.40
225 226 9.491675 AAGTCTATTCATCTTCAATCATAGCAG 57.508 33.333 0.00 0.00 0.00 4.24
226 227 9.269453 CAAGTCTATTCATCTTCAATCATAGCA 57.731 33.333 0.00 0.00 0.00 3.49
227 228 9.486497 TCAAGTCTATTCATCTTCAATCATAGC 57.514 33.333 0.00 0.00 0.00 2.97
268 269 8.704849 TCCACCAGATCATTTCTTTCTAAAAA 57.295 30.769 0.00 0.00 29.93 1.94
269 270 7.394359 CCTCCACCAGATCATTTCTTTCTAAAA 59.606 37.037 0.00 0.00 29.93 1.52
270 271 6.886459 CCTCCACCAGATCATTTCTTTCTAAA 59.114 38.462 0.00 0.00 29.93 1.85
271 272 6.215431 TCCTCCACCAGATCATTTCTTTCTAA 59.785 38.462 0.00 0.00 29.93 2.10
272 273 5.726308 TCCTCCACCAGATCATTTCTTTCTA 59.274 40.000 0.00 0.00 29.93 2.10
273 274 4.537688 TCCTCCACCAGATCATTTCTTTCT 59.462 41.667 0.00 0.00 29.93 2.52
274 275 4.848357 TCCTCCACCAGATCATTTCTTTC 58.152 43.478 0.00 0.00 29.93 2.62
275 276 4.290722 ACTCCTCCACCAGATCATTTCTTT 59.709 41.667 0.00 0.00 29.93 2.52
276 277 3.848975 ACTCCTCCACCAGATCATTTCTT 59.151 43.478 0.00 0.00 29.93 2.52
277 278 3.458831 ACTCCTCCACCAGATCATTTCT 58.541 45.455 0.00 0.00 33.90 2.52
278 279 3.922171 ACTCCTCCACCAGATCATTTC 57.078 47.619 0.00 0.00 0.00 2.17
279 280 4.664688 AAACTCCTCCACCAGATCATTT 57.335 40.909 0.00 0.00 0.00 2.32
280 281 4.664688 AAAACTCCTCCACCAGATCATT 57.335 40.909 0.00 0.00 0.00 2.57
281 282 4.664688 AAAAACTCCTCCACCAGATCAT 57.335 40.909 0.00 0.00 0.00 2.45
302 303 5.850557 TCATTGCTCCAAGTTCTCAAAAA 57.149 34.783 0.00 0.00 0.00 1.94
303 304 6.409524 AATCATTGCTCCAAGTTCTCAAAA 57.590 33.333 0.00 0.00 0.00 2.44
304 305 7.231317 AGTTAATCATTGCTCCAAGTTCTCAAA 59.769 33.333 0.00 0.00 0.00 2.69
305 306 6.716628 AGTTAATCATTGCTCCAAGTTCTCAA 59.283 34.615 0.00 0.00 0.00 3.02
306 307 6.240894 AGTTAATCATTGCTCCAAGTTCTCA 58.759 36.000 0.00 0.00 0.00 3.27
307 308 6.749923 AGTTAATCATTGCTCCAAGTTCTC 57.250 37.500 0.00 0.00 0.00 2.87
308 309 8.814038 ATTAGTTAATCATTGCTCCAAGTTCT 57.186 30.769 0.00 0.00 0.00 3.01
312 313 9.903682 CCATAATTAGTTAATCATTGCTCCAAG 57.096 33.333 0.00 0.00 0.00 3.61
313 314 9.639563 TCCATAATTAGTTAATCATTGCTCCAA 57.360 29.630 0.00 0.00 0.00 3.53
314 315 9.288576 CTCCATAATTAGTTAATCATTGCTCCA 57.711 33.333 0.00 0.00 0.00 3.86
315 316 9.507329 TCTCCATAATTAGTTAATCATTGCTCC 57.493 33.333 0.00 0.00 0.00 4.70
377 378 7.996385 AGTTTGTGACTGCTACTAATTTGTTT 58.004 30.769 0.00 0.00 37.17 2.83
389 391 0.532862 CCCACGAGTTTGTGACTGCT 60.533 55.000 1.00 0.00 42.55 4.24
390 392 1.941812 CCCACGAGTTTGTGACTGC 59.058 57.895 1.00 0.00 42.55 4.40
395 404 2.972505 AGCGCCCACGAGTTTGTG 60.973 61.111 2.29 0.00 43.93 3.33
403 412 2.179018 CCAAATTCAGCGCCCACG 59.821 61.111 2.29 0.00 44.07 4.94
410 419 2.675032 GCTTAGTTGGGCCAAATTCAGC 60.675 50.000 25.53 25.41 0.00 4.26
430 439 4.148338 GACTCTCTGGAGGCTCGTAAGC 62.148 59.091 8.69 0.00 43.98 3.09
431 440 1.673920 GACTCTCTGGAGGCTCGTAAG 59.326 57.143 8.69 6.30 43.98 2.34
432 441 1.752683 GACTCTCTGGAGGCTCGTAA 58.247 55.000 8.69 0.00 43.98 3.18
434 443 4.329831 GACTCTCTGGAGGCTCGT 57.670 61.111 8.69 0.00 43.98 4.18
439 448 1.316706 GGTCCGTGACTCTCTGGAGG 61.317 65.000 4.41 0.00 43.46 4.30
440 449 0.609406 TGGTCCGTGACTCTCTGGAG 60.609 60.000 4.41 0.00 44.62 3.86
441 450 0.609406 CTGGTCCGTGACTCTCTGGA 60.609 60.000 4.41 0.00 32.47 3.86
443 452 0.523966 GACTGGTCCGTGACTCTCTG 59.476 60.000 4.41 0.00 32.47 3.35
444 453 0.402504 AGACTGGTCCGTGACTCTCT 59.597 55.000 4.41 0.67 32.47 3.10
445 454 0.806241 GAGACTGGTCCGTGACTCTC 59.194 60.000 4.41 5.45 32.47 3.20
446 455 0.609681 GGAGACTGGTCCGTGACTCT 60.610 60.000 11.57 0.57 32.47 3.24
447 456 1.596895 GGGAGACTGGTCCGTGACTC 61.597 65.000 4.41 5.90 37.50 3.36
448 457 1.606889 GGGAGACTGGTCCGTGACT 60.607 63.158 4.41 0.00 37.50 3.41
449 458 1.258445 ATGGGAGACTGGTCCGTGAC 61.258 60.000 0.00 0.00 37.50 3.67
450 459 0.544357 AATGGGAGACTGGTCCGTGA 60.544 55.000 0.00 0.00 37.50 4.35
460 482 2.079925 GCTGTGAGTGAAATGGGAGAC 58.920 52.381 0.00 0.00 0.00 3.36
463 485 1.338105 CGAGCTGTGAGTGAAATGGGA 60.338 52.381 0.00 0.00 0.00 4.37
476 498 2.359230 GCTTTCCCAGCGAGCTGT 60.359 61.111 21.73 0.00 42.15 4.40
685 731 2.279784 GAGGCGGGAGAAGATGCG 60.280 66.667 0.00 0.00 0.00 4.73
733 779 3.771160 GTCGACGCTGGTGGGGAT 61.771 66.667 0.00 0.00 0.00 3.85
867 922 3.209812 TCGATGAGGACGGGCTCG 61.210 66.667 3.27 3.27 43.02 5.03
1061 1134 3.324099 TTGACGAGGACGAGCTCGC 62.324 63.158 34.83 25.65 45.79 5.03
1258 1337 2.187946 GCTGCTGGCTACGATGGT 59.812 61.111 0.00 0.00 38.06 3.55
1347 1433 3.252964 CAGATTTGCACGCACCGA 58.747 55.556 0.00 0.00 0.00 4.69
1496 1582 0.783206 TGGCCCCAAGAATCCAAAGA 59.217 50.000 0.00 0.00 0.00 2.52
1497 1583 1.188863 CTGGCCCCAAGAATCCAAAG 58.811 55.000 0.00 0.00 0.00 2.77
1511 1597 1.076485 AGGACATGATTGCCTGGCC 60.076 57.895 17.53 0.00 41.21 5.36
1774 1887 8.551682 AATTGGTGGAAATTACCATGATATGT 57.448 30.769 0.00 0.00 46.81 2.29
1816 1929 8.347035 ACACACACCATTTACAAGTAATAACAC 58.653 33.333 0.00 0.00 0.00 3.32
2086 2367 4.455533 AGCAAACGAACATTTAGATGCTGA 59.544 37.500 0.00 0.00 41.01 4.26
2169 2450 5.798132 TCTGTCATCAGTGTGAAATAAGCT 58.202 37.500 0.00 0.00 41.91 3.74
2254 2535 7.655328 TGCCAGTGATTTAAAACTTTGGTATTG 59.345 33.333 15.11 0.00 0.00 1.90
2292 2573 2.250939 CGTTTCGGACAAGCTGCCA 61.251 57.895 0.00 0.00 0.00 4.92
2795 3108 0.670706 CAGCTAGCAGTGCCGAGATA 59.329 55.000 18.83 0.00 0.00 1.98
2841 3154 3.615496 GCTTTCATGTGCATGATGAAACC 59.385 43.478 23.11 17.01 46.12 3.27
3171 3498 4.641396 TGGTAATTCACTTGACAGGTCTG 58.359 43.478 0.65 0.00 0.00 3.51
3243 3572 7.056002 TGTGTTGCTTGAATAACTACATACG 57.944 36.000 0.00 0.00 0.00 3.06
3349 3678 4.344104 ACCCATTACATTTTCTGGACTGG 58.656 43.478 0.00 0.00 0.00 4.00
3448 3777 1.677966 CTCCCCTCGGAACTCACGA 60.678 63.158 0.00 0.00 37.86 4.35
3454 3783 2.269241 CCTTGCTCCCCTCGGAAC 59.731 66.667 0.00 0.00 37.86 3.62
3703 4032 0.321021 AGCTGCTCTCCACTGTTGAG 59.679 55.000 0.00 2.62 0.00 3.02
3724 4053 1.444553 CGACTGCTCCGGAGTGAAC 60.445 63.158 31.43 19.03 0.00 3.18
3840 4170 1.216064 AGAAGCAGATACCATGCCCA 58.784 50.000 0.00 0.00 44.97 5.36
3910 4241 4.037208 CCAGTATCAATCAGGCCACAAATC 59.963 45.833 5.01 0.00 0.00 2.17
3966 4318 4.518249 GAGGGAACTTAGGGAAACTGATG 58.482 47.826 0.00 0.00 44.43 3.07
3984 4336 2.558359 GGAACACACATTTGAAGGAGGG 59.442 50.000 0.00 0.00 0.00 4.30
4007 4359 3.599584 CTGGAACATGCTGCCAGG 58.400 61.111 17.09 3.80 44.24 4.45
4052 4404 3.559655 TGAACTGATTGTCAACTCAACCG 59.440 43.478 0.00 0.00 0.00 4.44
4080 4432 7.793036 AGCACTCTATGATCATACATGCATAT 58.207 34.615 27.11 14.34 0.00 1.78
4081 4433 7.179076 AGCACTCTATGATCATACATGCATA 57.821 36.000 27.11 6.98 0.00 3.14
4082 4434 6.051179 AGCACTCTATGATCATACATGCAT 57.949 37.500 27.11 17.00 0.00 3.96
4083 4435 5.476614 GAGCACTCTATGATCATACATGCA 58.523 41.667 27.11 8.12 43.60 3.96
4087 4439 4.398319 TCGGAGCACTCTATGATCATACA 58.602 43.478 11.49 0.75 46.10 2.29
4088 4440 5.124617 TCATCGGAGCACTCTATGATCATAC 59.875 44.000 11.49 2.00 46.10 2.39
4089 4441 5.256474 TCATCGGAGCACTCTATGATCATA 58.744 41.667 14.64 14.64 46.10 2.15
4090 4442 4.085009 TCATCGGAGCACTCTATGATCAT 58.915 43.478 13.81 13.81 46.10 2.45
4091 4443 3.490348 TCATCGGAGCACTCTATGATCA 58.510 45.455 0.00 0.00 46.10 2.92
4092 4444 4.511617 TTCATCGGAGCACTCTATGATC 57.488 45.455 13.37 0.00 43.39 2.92
4093 4445 4.525874 TGATTCATCGGAGCACTCTATGAT 59.474 41.667 13.37 6.13 34.47 2.45
4094 4446 3.891366 TGATTCATCGGAGCACTCTATGA 59.109 43.478 10.32 10.32 33.46 2.15
4095 4447 3.986572 GTGATTCATCGGAGCACTCTATG 59.013 47.826 0.00 3.01 31.41 2.23
4096 4448 3.638627 TGTGATTCATCGGAGCACTCTAT 59.361 43.478 0.00 0.00 33.72 1.98
4098 4450 1.827344 TGTGATTCATCGGAGCACTCT 59.173 47.619 0.00 0.00 33.72 3.24
4100 4452 2.027745 ACTTGTGATTCATCGGAGCACT 60.028 45.455 0.00 0.00 33.72 4.40
4101 4453 2.350522 ACTTGTGATTCATCGGAGCAC 58.649 47.619 0.00 0.00 33.39 4.40
4102 4454 2.768253 ACTTGTGATTCATCGGAGCA 57.232 45.000 0.00 0.00 0.00 4.26
4103 4455 4.046938 TCTACTTGTGATTCATCGGAGC 57.953 45.455 0.00 0.00 0.00 4.70
4104 4456 8.138074 TCTAATTCTACTTGTGATTCATCGGAG 58.862 37.037 0.00 0.00 0.00 4.63
4105 4457 8.007405 TCTAATTCTACTTGTGATTCATCGGA 57.993 34.615 0.00 0.00 0.00 4.55
4106 4458 7.095857 GCTCTAATTCTACTTGTGATTCATCGG 60.096 40.741 0.00 0.00 0.00 4.18
4107 4459 7.095857 GGCTCTAATTCTACTTGTGATTCATCG 60.096 40.741 0.00 0.00 0.00 3.84
4108 4460 7.930865 AGGCTCTAATTCTACTTGTGATTCATC 59.069 37.037 0.00 0.00 0.00 2.92
4109 4461 7.800092 AGGCTCTAATTCTACTTGTGATTCAT 58.200 34.615 0.00 0.00 0.00 2.57
4111 4463 7.466590 GCAAGGCTCTAATTCTACTTGTGATTC 60.467 40.741 0.00 0.00 38.01 2.52
4112 4464 6.317391 GCAAGGCTCTAATTCTACTTGTGATT 59.683 38.462 0.00 0.00 38.01 2.57
4113 4465 5.819901 GCAAGGCTCTAATTCTACTTGTGAT 59.180 40.000 0.00 0.00 38.01 3.06
4114 4466 5.178797 GCAAGGCTCTAATTCTACTTGTGA 58.821 41.667 0.00 0.00 38.01 3.58
4115 4467 4.333926 GGCAAGGCTCTAATTCTACTTGTG 59.666 45.833 0.00 0.00 38.01 3.33
4116 4468 4.019321 TGGCAAGGCTCTAATTCTACTTGT 60.019 41.667 0.00 0.00 38.01 3.16
4119 4471 5.372373 GAATGGCAAGGCTCTAATTCTACT 58.628 41.667 0.00 0.00 0.00 2.57
4120 4472 4.517075 GGAATGGCAAGGCTCTAATTCTAC 59.483 45.833 0.00 0.00 0.00 2.59
4121 4473 4.413520 AGGAATGGCAAGGCTCTAATTCTA 59.586 41.667 0.00 0.00 0.00 2.10
4123 4475 3.560105 AGGAATGGCAAGGCTCTAATTC 58.440 45.455 0.00 0.00 0.00 2.17
4125 4477 3.677156 AAGGAATGGCAAGGCTCTAAT 57.323 42.857 0.00 0.00 0.00 1.73
4126 4478 3.245229 TGAAAGGAATGGCAAGGCTCTAA 60.245 43.478 0.00 0.00 0.00 2.10
4128 4480 1.076024 TGAAAGGAATGGCAAGGCTCT 59.924 47.619 0.00 0.00 0.00 4.09
4129 4481 1.475682 CTGAAAGGAATGGCAAGGCTC 59.524 52.381 0.00 0.00 0.00 4.70
4157 4567 4.159135 CAGCAAAAGCCCTTTCAGATATGT 59.841 41.667 0.00 0.00 31.45 2.29
4218 4628 3.125829 GCATGTGAATATGCGACCCATAG 59.874 47.826 0.00 0.00 43.36 2.23
4233 4643 3.266772 AGATAAAAGGGACAGGCATGTGA 59.733 43.478 9.62 0.00 40.68 3.58
4237 4647 4.322057 ACAAGATAAAAGGGACAGGCAT 57.678 40.909 0.00 0.00 0.00 4.40
4241 4651 4.504858 ACGCTACAAGATAAAAGGGACAG 58.495 43.478 0.00 0.00 0.00 3.51
4270 4680 7.491372 TCGTGCAAACGAAGAATATCTTATTCT 59.509 33.333 0.00 4.34 36.73 2.40
4271 4681 7.618442 TCGTGCAAACGAAGAATATCTTATTC 58.382 34.615 0.00 0.02 36.73 1.75
4272 4682 7.491372 TCTCGTGCAAACGAAGAATATCTTATT 59.509 33.333 2.33 0.00 41.87 1.40
4273 4683 6.978659 TCTCGTGCAAACGAAGAATATCTTAT 59.021 34.615 2.33 0.00 41.87 1.73
4274 4684 6.327154 TCTCGTGCAAACGAAGAATATCTTA 58.673 36.000 2.33 0.00 41.87 2.10
4275 4685 5.168569 TCTCGTGCAAACGAAGAATATCTT 58.831 37.500 2.33 0.00 41.87 2.40
4287 4697 1.202245 TGCAAAACCTCTCGTGCAAAC 60.202 47.619 0.00 0.00 43.65 2.93
4340 4750 1.480954 AGGTAAGCACACGACCATAGG 59.519 52.381 0.00 0.00 35.56 2.57
4357 4767 4.910458 ACCAGCTGTATTTGTAAGAGGT 57.090 40.909 13.81 0.00 0.00 3.85
4393 4803 0.810031 CGTATGAGGCCGGTTTGAGG 60.810 60.000 1.90 0.00 0.00 3.86
4394 4804 1.429148 GCGTATGAGGCCGGTTTGAG 61.429 60.000 1.90 0.00 0.00 3.02
4395 4805 1.448893 GCGTATGAGGCCGGTTTGA 60.449 57.895 1.90 0.00 0.00 2.69
4396 4806 2.469516 GGCGTATGAGGCCGGTTTG 61.470 63.158 1.90 0.00 39.53 2.93
4397 4807 2.124860 GGCGTATGAGGCCGGTTT 60.125 61.111 1.90 0.00 39.53 3.27
4422 4832 3.292159 AAAAAGTGTCCGGGCGGC 61.292 61.111 0.00 0.00 34.68 6.53
4437 4847 2.243736 AGGGGGTTGTCTGAGTCAAAAA 59.756 45.455 0.00 0.00 0.00 1.94
4438 4848 1.850345 AGGGGGTTGTCTGAGTCAAAA 59.150 47.619 0.00 0.00 0.00 2.44
4439 4849 1.420138 GAGGGGGTTGTCTGAGTCAAA 59.580 52.381 0.00 0.00 0.00 2.69
4440 4850 1.056660 GAGGGGGTTGTCTGAGTCAA 58.943 55.000 0.00 0.00 0.00 3.18
4441 4851 0.105194 TGAGGGGGTTGTCTGAGTCA 60.105 55.000 0.00 0.00 0.00 3.41
4442 4852 1.056660 TTGAGGGGGTTGTCTGAGTC 58.943 55.000 0.00 0.00 0.00 3.36
4443 4853 1.143073 GTTTGAGGGGGTTGTCTGAGT 59.857 52.381 0.00 0.00 0.00 3.41
4444 4854 1.878102 CGTTTGAGGGGGTTGTCTGAG 60.878 57.143 0.00 0.00 0.00 3.35
4445 4855 0.107831 CGTTTGAGGGGGTTGTCTGA 59.892 55.000 0.00 0.00 0.00 3.27
4446 4856 1.515521 GCGTTTGAGGGGGTTGTCTG 61.516 60.000 0.00 0.00 0.00 3.51
4447 4857 1.228154 GCGTTTGAGGGGGTTGTCT 60.228 57.895 0.00 0.00 0.00 3.41
4448 4858 2.265904 GGCGTTTGAGGGGGTTGTC 61.266 63.158 0.00 0.00 0.00 3.18
4449 4859 2.203437 GGCGTTTGAGGGGGTTGT 60.203 61.111 0.00 0.00 0.00 3.32
4450 4860 2.989253 GGGCGTTTGAGGGGGTTG 60.989 66.667 0.00 0.00 0.00 3.77
4451 4861 4.653888 CGGGCGTTTGAGGGGGTT 62.654 66.667 0.00 0.00 0.00 4.11
4455 4865 4.016706 AGTCCGGGCGTTTGAGGG 62.017 66.667 0.00 0.00 0.00 4.30
4456 4866 2.742372 CAGTCCGGGCGTTTGAGG 60.742 66.667 0.00 0.00 0.00 3.86
4457 4867 2.027625 GTCAGTCCGGGCGTTTGAG 61.028 63.158 0.00 0.00 0.00 3.02
4458 4868 2.029964 GTCAGTCCGGGCGTTTGA 59.970 61.111 0.00 0.00 0.00 2.69
4459 4869 2.030562 AGTCAGTCCGGGCGTTTG 59.969 61.111 0.00 0.00 0.00 2.93
4460 4870 2.030562 CAGTCAGTCCGGGCGTTT 59.969 61.111 0.00 0.00 0.00 3.60
4461 4871 2.915659 TCAGTCAGTCCGGGCGTT 60.916 61.111 0.00 0.00 0.00 4.84
4462 4872 3.681835 GTCAGTCAGTCCGGGCGT 61.682 66.667 0.00 0.00 0.00 5.68
4463 4873 3.680786 TGTCAGTCAGTCCGGGCG 61.681 66.667 0.00 0.00 0.00 6.13
4464 4874 2.048127 GTGTCAGTCAGTCCGGGC 60.048 66.667 0.00 0.00 0.00 6.13
4465 4875 2.657237 GGTGTCAGTCAGTCCGGG 59.343 66.667 0.00 0.00 0.00 5.73
4466 4876 2.657237 GGGTGTCAGTCAGTCCGG 59.343 66.667 0.00 0.00 0.00 5.14
4467 4877 1.472662 AAGGGGTGTCAGTCAGTCCG 61.473 60.000 0.00 0.00 0.00 4.79
4468 4878 1.640917 TAAGGGGTGTCAGTCAGTCC 58.359 55.000 0.00 0.00 0.00 3.85
4469 4879 6.071278 GGATATATAAGGGGTGTCAGTCAGTC 60.071 46.154 0.00 0.00 0.00 3.51
4470 4880 5.780793 GGATATATAAGGGGTGTCAGTCAGT 59.219 44.000 0.00 0.00 0.00 3.41
4471 4881 5.105716 CGGATATATAAGGGGTGTCAGTCAG 60.106 48.000 0.00 0.00 0.00 3.51
4472 4882 4.770531 CGGATATATAAGGGGTGTCAGTCA 59.229 45.833 0.00 0.00 0.00 3.41
4473 4883 4.159879 CCGGATATATAAGGGGTGTCAGTC 59.840 50.000 0.00 0.00 0.00 3.51
4474 4884 4.094476 CCGGATATATAAGGGGTGTCAGT 58.906 47.826 0.00 0.00 0.00 3.41
4475 4885 3.118738 GCCGGATATATAAGGGGTGTCAG 60.119 52.174 5.05 0.00 0.00 3.51
4476 4886 2.835764 GCCGGATATATAAGGGGTGTCA 59.164 50.000 5.05 0.00 0.00 3.58
4477 4887 2.169978 GGCCGGATATATAAGGGGTGTC 59.830 54.545 5.05 0.00 0.00 3.67
4478 4888 2.193993 GGCCGGATATATAAGGGGTGT 58.806 52.381 5.05 0.00 0.00 4.16
4479 4889 1.489230 GGGCCGGATATATAAGGGGTG 59.511 57.143 5.05 0.00 0.00 4.61
4480 4890 1.081513 TGGGCCGGATATATAAGGGGT 59.918 52.381 5.05 0.00 0.00 4.95
4481 4891 1.887797 TGGGCCGGATATATAAGGGG 58.112 55.000 5.05 0.00 0.00 4.79
4482 4892 4.519906 ATTTGGGCCGGATATATAAGGG 57.480 45.455 5.05 1.19 0.00 3.95
4483 4893 5.621193 CCTATTTGGGCCGGATATATAAGG 58.379 45.833 5.05 0.00 0.00 2.69
4841 5251 4.825085 ACGAGAGGAGAGAGTAAATGGATC 59.175 45.833 0.00 0.00 0.00 3.36
4842 5252 4.798882 ACGAGAGGAGAGAGTAAATGGAT 58.201 43.478 0.00 0.00 0.00 3.41
4843 5253 4.080243 AGACGAGAGGAGAGAGTAAATGGA 60.080 45.833 0.00 0.00 0.00 3.41
4844 5254 4.204012 AGACGAGAGGAGAGAGTAAATGG 58.796 47.826 0.00 0.00 0.00 3.16
4845 5255 5.220970 GGAAGACGAGAGGAGAGAGTAAATG 60.221 48.000 0.00 0.00 0.00 2.32
4846 5256 4.885325 GGAAGACGAGAGGAGAGAGTAAAT 59.115 45.833 0.00 0.00 0.00 1.40
4847 5257 4.019141 AGGAAGACGAGAGGAGAGAGTAAA 60.019 45.833 0.00 0.00 0.00 2.01
4848 5258 3.520317 AGGAAGACGAGAGGAGAGAGTAA 59.480 47.826 0.00 0.00 0.00 2.24
4849 5259 3.109151 AGGAAGACGAGAGGAGAGAGTA 58.891 50.000 0.00 0.00 0.00 2.59
4850 5260 1.913419 AGGAAGACGAGAGGAGAGAGT 59.087 52.381 0.00 0.00 0.00 3.24
4851 5261 2.561569 GAGGAAGACGAGAGGAGAGAG 58.438 57.143 0.00 0.00 0.00 3.20
4852 5262 1.210967 GGAGGAAGACGAGAGGAGAGA 59.789 57.143 0.00 0.00 0.00 3.10
4853 5263 1.211949 AGGAGGAAGACGAGAGGAGAG 59.788 57.143 0.00 0.00 0.00 3.20
4854 5264 1.210967 GAGGAGGAAGACGAGAGGAGA 59.789 57.143 0.00 0.00 0.00 3.71
4855 5265 1.675552 GAGGAGGAAGACGAGAGGAG 58.324 60.000 0.00 0.00 0.00 3.69
4856 5266 0.256464 GGAGGAGGAAGACGAGAGGA 59.744 60.000 0.00 0.00 0.00 3.71
4857 5267 0.033991 TGGAGGAGGAAGACGAGAGG 60.034 60.000 0.00 0.00 0.00 3.69
4858 5268 1.099689 GTGGAGGAGGAAGACGAGAG 58.900 60.000 0.00 0.00 0.00 3.20
4859 5269 3.267908 GTGGAGGAGGAAGACGAGA 57.732 57.895 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.