AutoCloner

Multiple sequence alignment - TraesCS2D01G072300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G072300	chr2D	100.000	2744	0	0	1	2744	30421305	30424048	0.000000e+00	5068.0
1	TraesCS2D01G072300	chr2D	86.273	1304	115	27	462	1736	30398935	30397667	0.000000e+00	1358.0
2	TraesCS2D01G072300	chr2D	80.640	1250	131	55	741	1937	30401742	30400551	0.000000e+00	865.0
3	TraesCS2D01G072300	chr2D	93.639	393	21	3	2355	2744	46167058	46167449	3.940000e-163	584.0
4	TraesCS2D01G072300	chr2D	93.671	395	18	5	2354	2744	401444720	401445111	3.940000e-163	584.0
5	TraesCS2D01G072300	chr2D	78.365	795	95	34	979	1765	30358065	30357340	6.970000e-121	444.0
6	TraesCS2D01G072300	chr2D	94.694	245	12	1	2114	2358	591693015	591693258	1.990000e-101	379.0
7	TraesCS2D01G072300	chr2D	95.339	236	10	1	2123	2358	108631729	108631963	9.280000e-100	374.0
8	TraesCS2D01G072300	chr2A	90.345	1564	90	22	830	2358	32369674	32371211	0.000000e+00	1995.0
9	TraesCS2D01G072300	chr2A	83.465	883	87	27	890	1739	32281000	32280144	0.000000e+00	767.0
10	TraesCS2D01G072300	chr2A	83.619	641	61	25	227	838	32368953	32369578	1.850000e-156	562.0
11	TraesCS2D01G072300	chr2A	87.568	370	32	5	987	1347	32333583	32333219	1.520000e-112	416.0
12	TraesCS2D01G072300	chr2A	78.807	486	53	20	1258	1734	32375683	32376127	5.790000e-72	281.0
13	TraesCS2D01G072300	chr2A	93.939	99	6	0	65	163	32346478	32346576	1.700000e-32	150.0
14	TraesCS2D01G072300	chr2A	93.939	99	6	0	65	163	32368846	32368944	1.700000e-32	150.0
15	TraesCS2D01G072300	chr2A	87.395	119	11	1	651	769	32326800	32326686	1.710000e-27	134.0
16	TraesCS2D01G072300	chr2B	86.058	1786	130	55	39	1756	49520672	49522406	0.000000e+00	1808.0
17	TraesCS2D01G072300	chr2B	83.261	1159	120	37	648	1752	49486325	49485187	0.000000e+00	998.0
18	TraesCS2D01G072300	chr2B	81.456	1154	136	47	864	1987	49599925	49601030	0.000000e+00	874.0
19	TraesCS2D01G072300	chr2B	86.658	757	46	13	39	779	49596238	49596955	0.000000e+00	787.0
20	TraesCS2D01G072300	chr2B	81.510	384	41	17	1606	1981	49668300	49668661	3.460000e-74	289.0
21	TraesCS2D01G072300	chr2B	81.170	393	44	17	1597	1981	49698455	49698825	3.460000e-74	289.0
22	TraesCS2D01G072300	chr2B	96.774	155	5	0	1856	2010	49522522	49522676	2.710000e-65	259.0
23	TraesCS2D01G072300	chr2B	82.792	308	35	9	1099	1403	49698017	49698309	2.710000e-65	259.0
24	TraesCS2D01G072300	chr2B	81.000	300	28	17	1597	1890	49653557	49653833	7.700000e-51	211.0
25	TraesCS2D01G072300	chr2B	89.855	138	12	2	1994	2130	49522892	49523028	2.810000e-40	176.0
26	TraesCS2D01G072300	chr2B	95.789	95	4	0	1813	1907	49522414	49522508	1.320000e-33	154.0
27	TraesCS2D01G072300	chr2B	78.125	224	25	15	650	859	49651543	49651756	1.330000e-23	121.0
28	TraesCS2D01G072300	chr2B	92.063	63	0	1	813	870	49596958	49597020	1.750000e-12	84.2
29	TraesCS2D01G072300	chr4D	91.190	647	26	6	2128	2744	14853330	14853975	0.000000e+00	850.0
30	TraesCS2D01G072300	chr3D	90.867	646	27	7	2128	2743	110223292	110222649	0.000000e+00	837.0
31	TraesCS2D01G072300	chr3D	94.177	395	17	4	2354	2744	598593893	598593501	5.060000e-167	597.0
32	TraesCS2D01G072300	chr3D	96.104	231	9	0	2128	2358	455690077	455690307	7.170000e-101	377.0
33	TraesCS2D01G072300	chr6D	94.430	395	17	3	2354	2744	379030283	379030676	1.090000e-168	603.0
34	TraesCS2D01G072300	chr6D	96.970	231	7	0	2128	2358	139385267	139385497	3.310000e-104	388.0
35	TraesCS2D01G072300	chr1D	94.177	395	17	4	2354	2744	100910823	100911215	5.060000e-167	597.0
36	TraesCS2D01G072300	chr1D	93.924	395	19	3	2354	2744	437505940	437506333	2.350000e-165	592.0
37	TraesCS2D01G072300	chr1D	96.186	236	8	1	2123	2358	437505684	437505918	4.290000e-103	385.0
38	TraesCS2D01G072300	chr1D	95.359	237	10	1	2123	2359	384778847	384778612	2.580000e-100	375.0
39	TraesCS2D01G072300	chr7D	93.671	395	21	2	2354	2744	626212679	626212285	3.040000e-164	588.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G072300	chr2D	30421305	30424048	2743	False	5068.000000	5068	100.000000	1	2744	1	chr2D.!!$F1	2743
1	TraesCS2D01G072300	chr2D	30397667	30401742	4075	True	1111.500000	1358	83.456500	462	1937	2	chr2D.!!$R2	1475
2	TraesCS2D01G072300	chr2D	30357340	30358065	725	True	444.000000	444	78.365000	979	1765	1	chr2D.!!$R1	786
3	TraesCS2D01G072300	chr2A	32368846	32371211	2365	False	902.333333	1995	89.301000	65	2358	3	chr2A.!!$F3	2293
4	TraesCS2D01G072300	chr2A	32280144	32281000	856	True	767.000000	767	83.465000	890	1739	1	chr2A.!!$R1	849
5	TraesCS2D01G072300	chr2B	49485187	49486325	1138	True	998.000000	998	83.261000	648	1752	1	chr2B.!!$R1	1104
6	TraesCS2D01G072300	chr2B	49520672	49523028	2356	False	599.250000	1808	92.119000	39	2130	4	chr2B.!!$F2	2091
7	TraesCS2D01G072300	chr2B	49596238	49601030	4792	False	581.733333	874	86.725667	39	1987	3	chr2B.!!$F3	1948
8	TraesCS2D01G072300	chr2B	49698017	49698825	808	False	274.000000	289	81.981000	1099	1981	2	chr2B.!!$F5	882
9	TraesCS2D01G072300	chr4D	14853330	14853975	645	False	850.000000	850	91.190000	2128	2744	1	chr4D.!!$F1	616
10	TraesCS2D01G072300	chr3D	110222649	110223292	643	True	837.000000	837	90.867000	2128	2743	1	chr3D.!!$R1	615
11	TraesCS2D01G072300	chr1D	437505684	437506333	649	False	488.500000	592	95.055000	2123	2744	2	chr1D.!!$F2	621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
947	6359	0.107214	ACCAACACCCTCACACACAG	60.107	55.0	0.0	0.0	0.0	3.66	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2710	8578	0.593128	AACAACTCAATGCCACGAGC	59.407	50.0	0.0	0.0	44.14	5.03	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	0.676184	TCCGAGATACTGATGCCTGC	59.324	55.000	0.00	0.00	0.00	4.85
20	21	0.390492	CCGAGATACTGATGCCTGCA	59.610	55.000	0.00	0.00	0.00	4.41
21	22	1.495878	CGAGATACTGATGCCTGCAC	58.504	55.000	0.00	0.00	0.00	4.57
22	23	1.068281	CGAGATACTGATGCCTGCACT	59.932	52.381	0.00	0.00	0.00	4.40
23	24	2.294512	CGAGATACTGATGCCTGCACTA	59.705	50.000	0.00	0.00	0.00	2.74
24	25	3.243535	CGAGATACTGATGCCTGCACTAA	60.244	47.826	0.00	0.00	0.00	2.24
26	27	5.102953	AGATACTGATGCCTGCACTAAAA	57.897	39.130	0.00	0.00	0.00	1.52
74	79	2.514013	GCGGCGATCTAACACCACG	61.514	63.158	12.98	0.00	0.00	4.94
174	179	6.740401	GCGACCCAATGGATTAATCTAGTACA	60.740	42.308	14.95	4.79	34.81	2.90
186	199	3.955650	TCTAGTACAAACACTCCTGGC	57.044	47.619	0.00	0.00	0.00	4.85
275	291	1.005804	CCGATCATGATCAGACGGCG	61.006	60.000	30.13	17.42	37.69	6.46
284	301	2.798148	ATCAGACGGCGTTTGTCCCC	62.798	60.000	26.65	7.46	37.04	4.81
294	316	2.643551	CGTTTGTCCCCAGCAATCTAT	58.356	47.619	0.00	0.00	0.00	1.98
348	382	3.435671	GGTTGGTCTAACTGAATGTTCCG	59.564	47.826	0.00	0.00	39.89	4.30
351	385	3.070446	TGGTCTAACTGAATGTTCCGTGT	59.930	43.478	0.00	0.00	39.89	4.49
396	437	0.452184	TCATCACTCTCGCTCGGAAC	59.548	55.000	0.00	0.00	0.00	3.62
450	494	2.287457	CTGATGGGGCCGCATTTGTG	62.287	60.000	33.33	19.84	0.00	3.33
451	495	2.283821	ATGGGGCCGCATTTGTGT	60.284	55.556	28.49	7.54	0.00	3.72
456	500	1.519751	GGGCCGCATTTGTGTACACA	61.520	55.000	24.62	24.62	39.98	3.72
457	501	0.525761	GGCCGCATTTGTGTACACAT	59.474	50.000	28.35	12.84	41.52	3.21
460	504	1.202020	CCGCATTTGTGTACACATCCG	60.202	52.381	28.35	23.91	41.52	4.18
461	505	1.202020	CGCATTTGTGTACACATCCGG	60.202	52.381	28.35	18.35	41.52	5.14
465	509	2.102109	TTGTGTACACATCCGGCCGT	62.102	55.000	28.35	6.67	41.52	5.68
511	2858	5.671074	CGTTGAGCTGAAAGAAGTAACTTC	58.329	41.667	0.00	0.00	40.45	3.01
512	2859	7.933715	GCGTTGAGCTGAAAGAAGTAACTTCT	61.934	42.308	2.61	0.00	46.52	2.85
529	2876	3.893813	ACTTCTGGTAAGTGGTAACGACT	59.106	43.478	0.00	0.00	42.51	4.18
617	2970	8.577296	CCTATAGTCAGCAGCAGTATTAACTAA	58.423	37.037	0.00	0.00	33.48	2.24
623	2980	7.278868	GTCAGCAGCAGTATTAACTAATCAGTT	59.721	37.037	0.00	0.00	46.77	3.16
624	2981	8.474831	TCAGCAGCAGTATTAACTAATCAGTTA	58.525	33.333	0.00	0.00	43.33	2.24
680	3047	3.077359	GTTCCATGAGACTTCCTGGTTG	58.923	50.000	0.00	0.00	39.40	3.77
681	3048	1.630369	TCCATGAGACTTCCTGGTTGG	59.370	52.381	0.00	0.00	39.40	3.77
779	3149	5.671493	AGTACACCTACAATACAAGCATCC	58.329	41.667	0.00	0.00	0.00	3.51
793	3174	4.298332	CAAGCATCCCTGTTTGTTTACAC	58.702	43.478	0.00	0.00	38.40	2.90
809	3192	6.065374	TGTTTACACTTTAGATCCCAGCAAA	58.935	36.000	0.00	0.00	0.00	3.68
870	3358	4.612259	CGACTTGTACGATAATAGTCCCCG	60.612	50.000	0.00	0.00	33.39	5.73
947	6359	0.107214	ACCAACACCCTCACACACAG	60.107	55.000	0.00	0.00	0.00	3.66
948	6360	0.107214	CCAACACCCTCACACACAGT	60.107	55.000	0.00	0.00	0.00	3.55
952	6372	1.559682	ACACCCTCACACACAGTCTTT	59.440	47.619	0.00	0.00	0.00	2.52
967	6387	4.843516	ACAGTCTTTCTCTTCCCTTCTGAT	59.156	41.667	0.00	0.00	0.00	2.90
968	6388	5.046663	ACAGTCTTTCTCTTCCCTTCTGATC	60.047	44.000	0.00	0.00	0.00	2.92
971	6391	5.186797	GTCTTTCTCTTCCCTTCTGATCAGA	59.813	44.000	21.67	21.67	35.27	3.27
972	6392	5.421693	TCTTTCTCTTCCCTTCTGATCAGAG	59.578	44.000	23.92	17.49	38.88	3.35
975	6410	3.176411	TCTTCCCTTCTGATCAGAGCAA	58.824	45.455	23.92	14.24	38.88	3.91
977	6412	2.544721	TCCCTTCTGATCAGAGCAACT	58.455	47.619	23.92	0.00	38.88	3.16
998	6438	2.069273	GAGCAAGTAAAGAAGCGAGCA	58.931	47.619	0.00	0.00	0.00	4.26
999	6439	2.675348	GAGCAAGTAAAGAAGCGAGCAT	59.325	45.455	0.00	0.00	0.00	3.79
1202	6654	2.466846	GGCTTCTTCTTCCTCTCTCCT	58.533	52.381	0.00	0.00	0.00	3.69
1365	6832	0.761187	CCATCCCATCCACGAGTGAT	59.239	55.000	4.59	0.00	0.00	3.06
1366	6833	1.970640	CCATCCCATCCACGAGTGATA	59.029	52.381	4.59	0.00	0.00	2.15
1392	6865	2.029739	TGTCGTCACGGCTTCTGAATTA	60.030	45.455	2.20	0.00	30.55	1.40
1480	6968	3.197790	CCAAGAGTGCATCGGCGG	61.198	66.667	7.21	0.00	45.35	6.13
1485	6973	3.173390	GAGTGCATCGGCGGATTGC	62.173	63.158	18.74	18.74	45.35	3.56
1631	7149	1.143684	AGCTGAGGAGGAGCTAGAGAG	59.856	57.143	0.00	0.00	45.17	3.20
1766	7292	5.302059	AGTCTAACTTGTAGCACTTGTGAGA	59.698	40.000	4.79	0.00	0.00	3.27
1767	7293	5.631512	GTCTAACTTGTAGCACTTGTGAGAG	59.368	44.000	4.79	0.00	0.00	3.20
1768	7294	2.760374	ACTTGTAGCACTTGTGAGAGC	58.240	47.619	4.79	0.00	39.45	4.09
1770	7296	1.047801	TGTAGCACTTGTGAGAGCCA	58.952	50.000	4.79	0.00	39.93	4.75
1771	7297	1.625315	TGTAGCACTTGTGAGAGCCAT	59.375	47.619	4.79	0.00	39.93	4.40
1810	7341	4.832248	ACTTGGATGATTTACGCTGAGAA	58.168	39.130	0.00	0.00	0.00	2.87
2134	7972	7.200455	AGTATTCGTAAGTGCAAAAGCTTTTT	58.800	30.769	21.70	9.78	39.48	1.94
2224	8062	4.019051	TCTGAGATGTGATGTTCCATGGTT	60.019	41.667	12.58	0.00	0.00	3.67
2257	8095	4.397420	AGGATTATGCATATTCGTTGCCA	58.603	39.130	17.90	0.00	39.39	4.92
2340	8178	0.776080	AATGAAGGGGGTGGTCCAGT	60.776	55.000	0.00	0.00	37.22	4.00
2365	8229	2.206750	GCAACAACACTTCAGTACCGA	58.793	47.619	0.00	0.00	0.00	4.69
2434	8298	0.823460	CCTGGCAATGGCGGTATTTT	59.177	50.000	14.66	0.00	42.47	1.82
2449	8313	6.646240	GGCGGTATTTTGATATCGTTACCTTA	59.354	38.462	15.45	0.00	33.49	2.69
2508	8372	5.947663	TCAGGGTGAAAACTCAGGATTTAA	58.052	37.500	0.00	0.00	0.00	1.52
2529	8393	7.581213	TTAATATTTGACTGAATCCGGCAAT	57.419	32.000	0.00	0.00	0.00	3.56
2535	8399	1.064463	ACTGAATCCGGCAATGGTGAT	60.064	47.619	0.00	0.00	0.00	3.06
2636	8500	2.067766	GTATCGTTGTTGGTTACGGCA	58.932	47.619	0.00	0.00	38.26	5.69
2639	8503	0.727793	CGTTGTTGGTTACGGCATGC	60.728	55.000	9.90	9.90	34.30	4.06
2649	8513	3.060602	GTTACGGCATGCCTTAGATCTC	58.939	50.000	33.07	13.44	0.00	2.75
2710	8578	1.938577	CATCCTTGATGCCTCGAGTTG	59.061	52.381	12.31	0.00	33.17	3.16
2735	8603	2.029649	GTGGCATTGAGTTGTTGCAGAT	60.030	45.455	0.00	0.00	38.12	2.90

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	0.676184	GCAGGCATCAGTATCTCGGA	59.324	55.000	0.00	0.00	0.00	4.55
2	3	1.068281	AGTGCAGGCATCAGTATCTCG	59.932	52.381	0.00	0.00	0.00	4.04
3	4	2.906691	AGTGCAGGCATCAGTATCTC	57.093	50.000	0.00	0.00	0.00	2.75
5	6	5.818136	TTTTTAGTGCAGGCATCAGTATC	57.182	39.130	0.00	0.00	0.00	2.24
29	30	3.990469	CACACGCATCAGTACTTCTCTTT	59.010	43.478	0.00	0.00	0.00	2.52
30	31	3.005897	ACACACGCATCAGTACTTCTCTT	59.994	43.478	0.00	0.00	0.00	2.85
31	32	2.558795	ACACACGCATCAGTACTTCTCT	59.441	45.455	0.00	0.00	0.00	3.10
32	33	2.917971	GACACACGCATCAGTACTTCTC	59.082	50.000	0.00	0.00	0.00	2.87
33	34	2.668556	CGACACACGCATCAGTACTTCT	60.669	50.000	0.00	0.00	34.51	2.85
34	35	1.649171	CGACACACGCATCAGTACTTC	59.351	52.381	0.00	0.00	34.51	3.01
35	36	1.698165	CGACACACGCATCAGTACTT	58.302	50.000	0.00	0.00	34.51	2.24
36	37	3.401577	CGACACACGCATCAGTACT	57.598	52.632	0.00	0.00	34.51	2.73
86	91	2.143122	GTCGTGTTTGATCTTGGCAGA	58.857	47.619	0.00	0.00	0.00	4.26
174	179	0.398318	GACAGGAGCCAGGAGTGTTT	59.602	55.000	0.00	0.00	0.00	2.83
275	291	5.193679	AGTAATAGATTGCTGGGGACAAAC	58.806	41.667	0.00	0.00	42.06	2.93
294	316	5.812642	GCAGCAGAAGAGCAAATAGTAGTAA	59.187	40.000	0.00	0.00	36.85	2.24
348	382	0.960861	GCAGGGCCAGGAAAGTACAC	60.961	60.000	6.18	0.00	0.00	2.90
375	409	0.676782	TCCGAGCGAGAGTGATGACA	60.677	55.000	0.00	0.00	0.00	3.58
396	437	3.854666	ACGGTGATGTCATTCTTCAGAG	58.145	45.455	0.00	0.00	32.21	3.35
450	494	2.202837	GGACGGCCGGATGTGTAC	60.203	66.667	31.76	3.28	0.00	2.90
451	495	2.363276	AGGACGGCCGGATGTGTA	60.363	61.111	31.76	0.00	39.96	2.90
465	509	0.537143	AAATTGCAGACCACGCAGGA	60.537	50.000	0.93	0.00	41.18	3.86
511	2858	3.928727	TCAGTCGTTACCACTTACCAG	57.071	47.619	0.00	0.00	0.00	4.00
512	2859	3.890756	TCTTCAGTCGTTACCACTTACCA	59.109	43.478	0.00	0.00	0.00	3.25
514	2861	5.118642	ACTCTTCAGTCGTTACCACTTAC	57.881	43.478	0.00	0.00	0.00	2.34
515	2862	5.300034	TCAACTCTTCAGTCGTTACCACTTA	59.700	40.000	0.00	0.00	29.93	2.24
516	2863	4.098960	TCAACTCTTCAGTCGTTACCACTT	59.901	41.667	0.00	0.00	29.93	3.16
529	2876	6.410942	TTCTGAGACTCAATCAACTCTTCA	57.589	37.500	6.61	0.00	0.00	3.02
645	3012	0.694771	TGGAACTTGCTCATGCCTCT	59.305	50.000	0.00	0.00	38.71	3.69
779	3149	6.488683	TGGGATCTAAAGTGTAAACAAACAGG	59.511	38.462	0.00	0.00	0.00	4.00
791	3172	5.335976	GGTTTCTTTGCTGGGATCTAAAGTG	60.336	44.000	0.00	0.00	33.19	3.16
793	3174	4.766891	TGGTTTCTTTGCTGGGATCTAAAG	59.233	41.667	0.00	0.00	0.00	1.85
809	3192	2.765699	ACATGTTTGTTGGCTGGTTTCT	59.234	40.909	0.00	0.00	29.55	2.52
870	3358	1.008538	CAGTTTTCACTGCCGTGCC	60.009	57.895	2.98	0.00	44.16	5.01
947	6359	5.186797	TCTGATCAGAAGGGAAGAGAAAGAC	59.813	44.000	23.17	0.00	33.91	3.01
948	6360	5.336945	TCTGATCAGAAGGGAAGAGAAAGA	58.663	41.667	23.17	0.00	33.91	2.52
952	6372	3.030291	GCTCTGATCAGAAGGGAAGAGA	58.970	50.000	25.09	0.53	36.94	3.10
968	6388	4.060900	TCTTTACTTGCTCAGTTGCTCTG	58.939	43.478	3.68	3.68	44.85	3.35
971	6391	3.251972	GCTTCTTTACTTGCTCAGTTGCT	59.748	43.478	0.00	0.00	36.88	3.91
972	6392	3.559504	GCTTCTTTACTTGCTCAGTTGC	58.440	45.455	0.00	0.00	36.88	4.17
975	6410	3.321497	CTCGCTTCTTTACTTGCTCAGT	58.679	45.455	0.00	0.00	39.87	3.41
977	6412	2.069273	GCTCGCTTCTTTACTTGCTCA	58.931	47.619	0.00	0.00	0.00	4.26
1349	6810	1.407618	CGTTATCACTCGTGGATGGGA	59.592	52.381	0.00	0.00	0.00	4.37
1416	6889	1.737793	CCTGAATAAGAACCACACGGC	59.262	52.381	0.00	0.00	34.57	5.68
1480	6968	3.267860	CTCTGCCGCCGAGCAATC	61.268	66.667	0.00	0.00	43.52	2.67
1490	6978	1.401905	GTTTAATCCCTTGCTCTGCCG	59.598	52.381	0.00	0.00	0.00	5.69
1491	6979	1.401905	CGTTTAATCCCTTGCTCTGCC	59.598	52.381	0.00	0.00	0.00	4.85
1631	7149	0.515564	GAGCTCGTCGATCTCTAGCC	59.484	60.000	16.82	0.00	33.63	3.93
1756	7282	6.596309	TCCTATATATGGCTCTCACAAGTG	57.404	41.667	0.00	0.00	0.00	3.16
1810	7341	7.344352	AGAGAACCTTAATTACTGCTCATCTCT	59.656	37.037	0.00	0.00	35.26	3.10
2073	7908	8.884726	GTTTCCAAATTTAAGGTTTTGCACTTA	58.115	29.630	0.00	0.00	32.68	2.24
2134	7972	2.433970	TCACACACACAGTTCTGATGGA	59.566	45.455	6.83	0.00	0.00	3.41
2224	8062	2.279741	GCATAATCCTCGTGCACAAGA	58.720	47.619	18.64	10.25	38.68	3.02
2257	8095	1.335689	GCGTCGTGTTCTAGACCACTT	60.336	52.381	17.18	0.00	34.10	3.16
2340	8178	2.166829	ACTGAAGTGTTGTTGCAACCA	58.833	42.857	26.14	13.54	0.00	3.67
2365	8229	2.103153	TCACCCTGAAACTCCAGTCT	57.897	50.000	0.00	0.00	32.43	3.24
2398	8262	0.759436	AGGTATGACCGGCGAAGGAT	60.759	55.000	9.30	0.00	44.90	3.24
2449	8313	4.868171	GCAACATCATGCAATGTCTTCAAT	59.132	37.500	4.53	0.00	46.80	2.57
2508	8372	4.279169	CCATTGCCGGATTCAGTCAAATAT	59.721	41.667	5.05	0.00	0.00	1.28
2529	8393	5.483937	AGATAAGGACACACAAGTATCACCA	59.516	40.000	0.00	0.00	0.00	4.17
2535	8399	7.297936	TCAAGAAGATAAGGACACACAAGTA	57.702	36.000	0.00	0.00	0.00	2.24
2666	8530	5.065090	GCACACAGCCAAAAGAAAGAAAAAT	59.935	36.000	0.00	0.00	37.23	1.82
2710	8578	0.593128	AACAACTCAATGCCACGAGC	59.407	50.000	0.00	0.00	44.14	5.03

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.