Multiple sequence alignment - TraesCS2D01G072200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G072200 chr2D 100.000 6098 0 0 1 6098 30410450 30404353 0.000000e+00 11261.0
1 TraesCS2D01G072200 chr2D 91.209 91 8 0 78 168 26434411 26434321 2.310000e-24 124.0
2 TraesCS2D01G072200 chr2B 87.278 3160 240 54 640 3708 49492592 49489504 0.000000e+00 3459.0
3 TraesCS2D01G072200 chr2B 94.496 1072 43 8 4350 5408 49488988 49487920 0.000000e+00 1639.0
4 TraesCS2D01G072200 chr2B 94.335 406 20 1 3845 4247 49489492 49489087 2.410000e-173 619.0
5 TraesCS2D01G072200 chr2A 89.089 2053 143 32 1697 3708 32339494 32337482 0.000000e+00 2475.0
6 TraesCS2D01G072200 chr2A 95.204 1105 36 6 4350 5448 32336924 32335831 0.000000e+00 1731.0
7 TraesCS2D01G072200 chr2A 96.267 509 13 4 3845 4349 32337470 32336964 0.000000e+00 830.0
8 TraesCS2D01G072200 chr2A 83.546 942 83 32 640 1540 32340842 32339932 0.000000e+00 815.0
9 TraesCS2D01G072200 chr5D 94.820 444 21 2 5448 5891 93860802 93860361 0.000000e+00 691.0
10 TraesCS2D01G072200 chr5D 92.601 446 30 3 1 443 463025376 463024931 6.670000e-179 638.0
11 TraesCS2D01G072200 chr5D 93.782 193 4 2 5913 6098 93860372 93860181 3.600000e-72 283.0
12 TraesCS2D01G072200 chr5D 92.386 197 11 2 445 640 463024883 463024690 1.670000e-70 278.0
13 TraesCS2D01G072200 chr5D 89.529 191 19 1 172 361 426297189 426296999 2.200000e-59 241.0
14 TraesCS2D01G072200 chr5D 93.103 116 6 1 3696 3809 500862438 500862553 1.050000e-37 169.0
15 TraesCS2D01G072200 chr5A 95.134 411 19 1 5481 5891 87415614 87415205 0.000000e+00 647.0
16 TraesCS2D01G072200 chr5A 93.229 192 6 5 5913 6098 87415216 87415026 6.020000e-70 276.0
17 TraesCS2D01G072200 chr5A 89.529 191 19 1 172 361 540395640 540395450 2.200000e-59 241.0
18 TraesCS2D01G072200 chr5A 87.179 117 14 1 5913 6029 478904957 478904842 1.380000e-26 132.0
19 TraesCS2D01G072200 chr3B 91.553 367 29 2 5448 5813 225178361 225178726 7.050000e-139 505.0
20 TraesCS2D01G072200 chr3B 89.459 370 29 8 5446 5813 49744033 49744394 5.570000e-125 459.0
21 TraesCS2D01G072200 chr3B 97.030 101 3 0 3704 3804 327059287 327059387 2.920000e-38 171.0
22 TraesCS2D01G072200 chr3B 95.327 107 5 0 3707 3813 674424290 674424184 2.920000e-38 171.0
23 TraesCS2D01G072200 chr3B 91.379 58 5 0 82 139 59967506 59967563 5.070000e-11 80.5
24 TraesCS2D01G072200 chr3B 91.379 58 5 0 82 139 808466284 808466341 5.070000e-11 80.5
25 TraesCS2D01G072200 chr1A 91.281 367 29 3 5448 5813 242688206 242688570 1.180000e-136 497.0
26 TraesCS2D01G072200 chrUn 90.244 369 34 2 5446 5813 287847627 287847260 1.190000e-131 481.0
27 TraesCS2D01G072200 chrUn 90.244 369 34 2 5446 5813 295169059 295168692 1.190000e-131 481.0
28 TraesCS2D01G072200 chrUn 90.244 369 34 2 5446 5813 347971748 347971381 1.190000e-131 481.0
29 TraesCS2D01G072200 chr7B 89.918 367 29 6 5448 5813 669134586 669134945 3.330000e-127 466.0
30 TraesCS2D01G072200 chr7B 95.455 110 4 1 3697 3805 372816557 372816666 2.260000e-39 174.0
31 TraesCS2D01G072200 chr7B 95.652 46 2 0 94 139 161222395 161222350 2.360000e-09 75.0
32 TraesCS2D01G072200 chr5B 96.237 186 7 0 5913 6098 536480895 536481080 7.680000e-79 305.0
33 TraesCS2D01G072200 chr5B 88.482 191 21 1 172 361 516094262 516094072 4.750000e-56 230.0
34 TraesCS2D01G072200 chr5B 97.000 100 3 0 3704 3803 382074723 382074624 1.050000e-37 169.0
35 TraesCS2D01G072200 chr5B 89.474 114 11 1 5913 6026 454486378 454486266 6.370000e-30 143.0
36 TraesCS2D01G072200 chr5B 94.565 92 5 0 5800 5891 536480815 536480906 6.370000e-30 143.0
37 TraesCS2D01G072200 chr5B 86.325 117 12 2 5913 6029 454359600 454359488 2.310000e-24 124.0
38 TraesCS2D01G072200 chr7D 89.231 195 16 1 169 363 8974734 8974923 7.900000e-59 239.0
39 TraesCS2D01G072200 chr7D 98.969 97 1 0 3707 3803 529049454 529049358 2.260000e-39 174.0
40 TraesCS2D01G072200 chr7D 95.789 95 3 1 269 363 615365605 615365698 1.060000e-32 152.0
41 TraesCS2D01G072200 chr7D 90.426 94 6 2 446 538 615365950 615366041 2.990000e-23 121.0
42 TraesCS2D01G072200 chr7D 90.698 86 7 1 548 633 8980613 8980697 5.000000e-21 113.0
43 TraesCS2D01G072200 chr3A 87.179 195 19 2 169 363 382372196 382372384 3.700000e-52 217.0
44 TraesCS2D01G072200 chr3A 92.105 76 5 1 559 633 382373518 382373593 8.360000e-19 106.0
45 TraesCS2D01G072200 chr3A 90.000 80 8 0 361 440 382372508 382372587 3.010000e-18 104.0
46 TraesCS2D01G072200 chr6B 97.059 102 3 0 3705 3806 76858312 76858211 8.130000e-39 172.0
47 TraesCS2D01G072200 chr6B 94.393 107 6 0 3705 3811 517836072 517835966 1.360000e-36 165.0
48 TraesCS2D01G072200 chr1B 97.980 99 2 0 3707 3805 572205775 572205677 8.130000e-39 172.0
49 TraesCS2D01G072200 chr4D 97.059 34 1 0 106 139 346193876 346193843 2.370000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G072200 chr2D 30404353 30410450 6097 True 11261.000000 11261 100.000000 1 6098 1 chr2D.!!$R2 6097
1 TraesCS2D01G072200 chr2B 49487920 49492592 4672 True 1905.666667 3459 92.036333 640 5408 3 chr2B.!!$R1 4768
2 TraesCS2D01G072200 chr2A 32335831 32340842 5011 True 1462.750000 2475 91.026500 640 5448 4 chr2A.!!$R1 4808
3 TraesCS2D01G072200 chr5D 93860181 93860802 621 True 487.000000 691 94.301000 5448 6098 2 chr5D.!!$R2 650
4 TraesCS2D01G072200 chr5D 463024690 463025376 686 True 458.000000 638 92.493500 1 640 2 chr5D.!!$R3 639
5 TraesCS2D01G072200 chr5A 87415026 87415614 588 True 461.500000 647 94.181500 5481 6098 2 chr5A.!!$R3 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.028955 GGGATAAGGGAGAAGGGGGT 60.029 60.0 0.0 0.0 0.00 4.95 F
1401 1503 0.184933 TTGTCCCAACTCAACCCCAG 59.815 55.0 0.0 0.0 0.00 4.45 F
1723 2108 0.179129 GCACTTGCCCATATGCACAC 60.179 55.0 0.0 0.0 41.88 3.82 F
2223 2611 0.319900 CTGCCGTGCTACTTCTGTGT 60.320 55.0 0.0 0.0 0.00 3.72 F
3804 4235 0.115745 TTTGGGACGGAGGGAGTAGT 59.884 55.0 0.0 0.0 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1655 1994 0.039618 AAACATGGGTAGGGTGGCTG 59.960 55.0 0.0 0.0 0.00 4.85 R
2722 3116 0.462581 TGCTGCTAGTGCTATGTGCC 60.463 55.0 0.0 0.0 42.00 5.01 R
3502 3931 0.098200 CCTGCTCATCAATGCACACG 59.902 55.0 0.0 0.0 35.20 4.49 R
4007 4441 0.035881 CCTCAGCTTCAGCCAGTTCA 59.964 55.0 0.0 0.0 43.38 3.18 R
5380 5870 0.827925 ACAGGCACAGGTCTCTCGAA 60.828 55.0 0.0 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.028955 GGGATAAGGGAGAAGGGGGT 60.029 60.000 0.00 0.00 0.00 4.95
53 55 5.890419 GGTTGGAAGATGAGGAAGAAATGAT 59.110 40.000 0.00 0.00 0.00 2.45
89 91 2.579201 GAGGCTACCTTGCTGCGA 59.421 61.111 0.00 0.00 31.76 5.10
166 168 3.844090 GGAGCAGCTCCGGGAGAC 61.844 72.222 26.09 17.74 41.08 3.36
307 311 1.869574 CGTCGACGAGCATGAGGTG 60.870 63.158 33.35 0.00 43.02 4.00
320 324 1.846124 GAGGTGGTTGGGGGAGTCA 60.846 63.158 0.00 0.00 0.00 3.41
501 551 1.021920 GCCTCCACCGCTTTTCTCTC 61.022 60.000 0.00 0.00 0.00 3.20
512 562 5.644206 ACCGCTTTTCTCTCCTCTTTAATTC 59.356 40.000 0.00 0.00 0.00 2.17
519 569 5.350547 TCTCTCCTCTTTAATTCCCCTTGA 58.649 41.667 0.00 0.00 0.00 3.02
548 598 3.226347 CGCTTCTTTCCGTTGCTAAAAG 58.774 45.455 0.00 0.00 0.00 2.27
549 599 2.980476 GCTTCTTTCCGTTGCTAAAAGC 59.020 45.455 0.00 0.00 42.82 3.51
562 613 2.226674 GCTAAAAGCACGCTTCTTTCCT 59.773 45.455 4.46 0.00 41.89 3.36
563 614 3.304726 GCTAAAAGCACGCTTCTTTCCTT 60.305 43.478 4.46 0.00 41.89 3.36
564 615 3.801114 AAAAGCACGCTTCTTTCCTTT 57.199 38.095 4.46 0.00 34.84 3.11
575 626 0.517316 CTTTCCTTTTCACCTCCGCG 59.483 55.000 0.00 0.00 0.00 6.46
897 984 0.253327 ATCCCCTCCGCTTTTCTGTC 59.747 55.000 0.00 0.00 0.00 3.51
943 1030 1.069823 ACTTCTCTGCACACTGACAGG 59.930 52.381 7.51 0.00 34.57 4.00
947 1034 2.592574 TGCACACTGACAGGCTGC 60.593 61.111 15.89 16.09 0.00 5.25
948 1035 2.281345 GCACACTGACAGGCTGCT 60.281 61.111 15.89 1.32 0.00 4.24
949 1036 1.895707 GCACACTGACAGGCTGCTT 60.896 57.895 15.89 0.00 0.00 3.91
950 1037 1.849976 GCACACTGACAGGCTGCTTC 61.850 60.000 15.89 6.27 0.00 3.86
1239 1335 1.446966 GGCTGTCTCGTCTTGCCTC 60.447 63.158 0.00 0.00 40.36 4.70
1283 1379 1.000171 CTTGCTTTGCTTGGGTCTTCC 60.000 52.381 0.00 0.00 0.00 3.46
1284 1380 0.185901 TGCTTTGCTTGGGTCTTCCT 59.814 50.000 0.00 0.00 36.20 3.36
1285 1381 0.884514 GCTTTGCTTGGGTCTTCCTC 59.115 55.000 0.00 0.00 36.20 3.71
1286 1382 1.546548 GCTTTGCTTGGGTCTTCCTCT 60.547 52.381 0.00 0.00 36.20 3.69
1287 1383 2.157738 CTTTGCTTGGGTCTTCCTCTG 58.842 52.381 0.00 0.00 36.20 3.35
1310 1406 4.323417 CTGCGGCTAACCATATCCAAATA 58.677 43.478 0.00 0.00 34.57 1.40
1331 1427 0.321122 GATCCATCCTCGTCCATGGC 60.321 60.000 6.96 0.96 39.69 4.40
1335 1431 0.249784 CATCCTCGTCCATGGCTCTG 60.250 60.000 6.96 0.00 0.00 3.35
1371 1467 6.287589 AGGTTGATCCTAGTTTACTCTGTG 57.712 41.667 0.00 0.00 46.10 3.66
1386 1488 1.009829 CTGTGCCTAGCCGATTTGTC 58.990 55.000 0.00 0.00 0.00 3.18
1397 1499 1.539827 CCGATTTGTCCCAACTCAACC 59.460 52.381 0.00 0.00 0.00 3.77
1401 1503 0.184933 TTGTCCCAACTCAACCCCAG 59.815 55.000 0.00 0.00 0.00 4.45
1442 1544 4.962836 AGTGGTGGCTGCTGGTGC 62.963 66.667 0.00 0.00 40.20 5.01
1457 1559 2.124612 TGCCCATGACATGCTCGG 60.125 61.111 10.10 7.32 0.00 4.63
1492 1594 4.290155 ACAAAATCTGTCACATTGTTCGC 58.710 39.130 0.00 0.00 29.87 4.70
1522 1624 1.611592 CTTGGTGTACGCGACGGAAC 61.612 60.000 15.93 3.20 0.00 3.62
1586 1925 3.138283 CCAAGGAGGCCAGGAATGTATAA 59.862 47.826 5.01 0.00 0.00 0.98
1590 1929 6.030727 AGGAGGCCAGGAATGTATAATTTT 57.969 37.500 5.01 0.00 0.00 1.82
1596 1935 6.016276 GGCCAGGAATGTATAATTTTCGTCAT 60.016 38.462 0.00 0.00 0.00 3.06
1613 1952 6.892310 TCGTCATGATAATCTCAGTTTGTG 57.108 37.500 0.00 0.00 37.28 3.33
1622 1961 3.657015 TCTCAGTTTGTGCTCTCTCAG 57.343 47.619 0.00 0.00 0.00 3.35
1625 1964 1.071385 CAGTTTGTGCTCTCTCAGGGT 59.929 52.381 0.00 0.00 0.00 4.34
1626 1965 1.346068 AGTTTGTGCTCTCTCAGGGTC 59.654 52.381 0.00 0.00 0.00 4.46
1632 1971 0.817013 GCTCTCTCAGGGTCACTCTG 59.183 60.000 0.00 0.00 0.00 3.35
1651 1990 4.934356 TCTGCATCTTTGGGGATTTTACT 58.066 39.130 0.00 0.00 0.00 2.24
1653 1992 4.671831 TGCATCTTTGGGGATTTTACTCA 58.328 39.130 0.00 0.00 0.00 3.41
1655 1994 5.360714 TGCATCTTTGGGGATTTTACTCATC 59.639 40.000 0.00 0.00 0.00 2.92
1656 1995 5.360714 GCATCTTTGGGGATTTTACTCATCA 59.639 40.000 0.00 0.00 0.00 3.07
1666 2005 3.906720 TTTACTCATCAGCCACCCTAC 57.093 47.619 0.00 0.00 0.00 3.18
1673 2012 0.844661 TCAGCCACCCTACCCATGTT 60.845 55.000 0.00 0.00 0.00 2.71
1676 2015 1.182667 GCCACCCTACCCATGTTTTC 58.817 55.000 0.00 0.00 0.00 2.29
1687 2026 1.202177 CCATGTTTTCGGGAAGCATCG 60.202 52.381 0.00 0.00 37.11 3.84
1692 2031 3.195661 GTTTTCGGGAAGCATCGTATCT 58.804 45.455 0.00 0.00 0.00 1.98
1693 2032 2.509052 TTCGGGAAGCATCGTATCTG 57.491 50.000 0.00 0.00 0.00 2.90
1695 2034 2.578786 TCGGGAAGCATCGTATCTGTA 58.421 47.619 0.00 0.00 0.00 2.74
1707 2092 2.069273 GTATCTGTATGATGGGCGCAC 58.931 52.381 10.83 6.04 36.65 5.34
1710 2095 0.659427 CTGTATGATGGGCGCACTTG 59.341 55.000 12.74 0.00 0.00 3.16
1723 2108 0.179129 GCACTTGCCCATATGCACAC 60.179 55.000 0.00 0.00 41.88 3.82
1731 2116 2.726821 CCCATATGCACACCAACTTCT 58.273 47.619 0.00 0.00 0.00 2.85
1734 2119 4.704540 CCCATATGCACACCAACTTCTAAA 59.295 41.667 0.00 0.00 0.00 1.85
1735 2120 5.360714 CCCATATGCACACCAACTTCTAAAT 59.639 40.000 0.00 0.00 0.00 1.40
1737 2122 4.789012 ATGCACACCAACTTCTAAATGG 57.211 40.909 0.00 0.00 40.16 3.16
1738 2123 2.295909 TGCACACCAACTTCTAAATGGC 59.704 45.455 0.00 0.00 37.77 4.40
1739 2124 2.668279 GCACACCAACTTCTAAATGGCG 60.668 50.000 0.00 0.00 37.77 5.69
1740 2125 2.552315 CACACCAACTTCTAAATGGCGT 59.448 45.455 0.00 0.00 37.77 5.68
1741 2126 2.552315 ACACCAACTTCTAAATGGCGTG 59.448 45.455 0.00 0.00 37.77 5.34
1742 2127 1.539827 ACCAACTTCTAAATGGCGTGC 59.460 47.619 0.00 0.00 37.77 5.34
1743 2128 1.539388 CCAACTTCTAAATGGCGTGCA 59.461 47.619 0.00 0.00 0.00 4.57
1746 2131 2.504367 ACTTCTAAATGGCGTGCACTT 58.496 42.857 16.19 4.31 0.00 3.16
1747 2132 2.226437 ACTTCTAAATGGCGTGCACTTG 59.774 45.455 16.19 0.69 0.00 3.16
1748 2133 0.521291 TCTAAATGGCGTGCACTTGC 59.479 50.000 16.19 11.80 42.50 4.01
1773 2158 7.436376 GCATTCTCTATTTTTATGGCAAAGGAC 59.564 37.037 0.00 0.00 0.00 3.85
1784 2169 2.040278 TGGCAAAGGACTCTTGCATAGT 59.960 45.455 9.52 2.05 32.75 2.12
1785 2170 3.084786 GGCAAAGGACTCTTGCATAGTT 58.915 45.455 9.52 0.00 32.75 2.24
1786 2171 3.119708 GGCAAAGGACTCTTGCATAGTTG 60.120 47.826 9.52 0.60 32.75 3.16
1821 2206 6.096846 ACCTAAAATCGCCTTTATTGCAATCT 59.903 34.615 16.86 0.00 0.00 2.40
1822 2207 6.418819 CCTAAAATCGCCTTTATTGCAATCTG 59.581 38.462 16.86 7.20 0.00 2.90
1824 2209 1.405105 TCGCCTTTATTGCAATCTGCC 59.595 47.619 16.86 1.30 44.23 4.85
1834 2220 7.643569 TTATTGCAATCTGCCAGAATAAAGA 57.356 32.000 16.86 0.00 44.23 2.52
1836 2222 3.696051 TGCAATCTGCCAGAATAAAGACC 59.304 43.478 0.00 0.00 44.23 3.85
1841 2227 6.765915 ATCTGCCAGAATAAAGACCTTTTC 57.234 37.500 0.00 0.00 34.23 2.29
1842 2228 5.630121 TCTGCCAGAATAAAGACCTTTTCA 58.370 37.500 0.00 0.00 34.23 2.69
1843 2229 6.248433 TCTGCCAGAATAAAGACCTTTTCAT 58.752 36.000 0.00 0.00 34.23 2.57
1844 2230 6.721208 TCTGCCAGAATAAAGACCTTTTCATT 59.279 34.615 0.00 0.00 34.23 2.57
1848 2234 9.875691 GCCAGAATAAAGACCTTTTCATTTTAT 57.124 29.630 0.00 0.00 34.23 1.40
1878 2264 2.451490 TGTTCAGTTTTGGTGAGGCAA 58.549 42.857 0.00 0.00 0.00 4.52
2025 2413 3.512516 GATGAAGCAGGTGGCCGC 61.513 66.667 8.12 8.12 46.50 6.53
2178 2566 1.600413 GGCAGAGCAAAACCAGTTTCG 60.600 52.381 0.00 0.00 31.45 3.46
2223 2611 0.319900 CTGCCGTGCTACTTCTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
2315 2703 2.164219 CAGGTTTCACGGCAGCATTTAT 59.836 45.455 0.00 0.00 0.00 1.40
2316 2704 2.164219 AGGTTTCACGGCAGCATTTATG 59.836 45.455 0.00 0.00 0.00 1.90
2382 2770 3.804036 TCAGTTCGCCTTTTTCTCTTCA 58.196 40.909 0.00 0.00 0.00 3.02
2387 2775 7.174946 TCAGTTCGCCTTTTTCTCTTCATATTT 59.825 33.333 0.00 0.00 0.00 1.40
2389 2777 6.436843 TCGCCTTTTTCTCTTCATATTTCC 57.563 37.500 0.00 0.00 0.00 3.13
2393 2781 8.458843 CGCCTTTTTCTCTTCATATTTCCTTTA 58.541 33.333 0.00 0.00 0.00 1.85
2417 2805 6.849085 TGTACATTTTGGCATGTTCCTTAT 57.151 33.333 0.00 0.00 38.40 1.73
2418 2806 6.862209 TGTACATTTTGGCATGTTCCTTATC 58.138 36.000 0.00 0.00 38.40 1.75
2419 2807 5.343307 ACATTTTGGCATGTTCCTTATCC 57.657 39.130 0.00 0.00 33.29 2.59
2420 2808 4.142182 ACATTTTGGCATGTTCCTTATCCG 60.142 41.667 0.00 0.00 33.29 4.18
2500 2892 5.762179 TGTGGTGTAAGGAAGATCTTCAT 57.238 39.130 31.29 24.75 41.20 2.57
2508 2900 7.397221 TGTAAGGAAGATCTTCATGACACAAT 58.603 34.615 28.57 13.12 39.14 2.71
2512 2904 4.978083 AGATCTTCATGACACAATTGGC 57.022 40.909 10.83 0.00 0.00 4.52
2522 2914 3.818210 TGACACAATTGGCGTTACTGATT 59.182 39.130 10.83 0.00 30.42 2.57
2540 2932 9.997482 TTACTGATTTCACTAAACAAACTGAAC 57.003 29.630 0.00 0.00 0.00 3.18
2583 2975 2.152016 GGTTTCACCTACACTCTTGCC 58.848 52.381 0.00 0.00 34.73 4.52
2588 2980 3.236047 TCACCTACACTCTTGCCTTGTA 58.764 45.455 0.00 0.00 0.00 2.41
2604 2996 4.751964 GCCTTGTAAACCCCTTTTAGAGGT 60.752 45.833 0.00 0.00 44.71 3.85
2606 2998 6.545567 CCTTGTAAACCCCTTTTAGAGGTTA 58.454 40.000 0.00 0.00 43.06 2.85
2670 3064 2.990740 TAATGTTGCCAACCCCTCTT 57.009 45.000 4.90 0.00 0.00 2.85
2671 3065 1.341080 AATGTTGCCAACCCCTCTTG 58.659 50.000 4.90 0.00 0.00 3.02
2680 3074 0.765510 AACCCCTCTTGTGGAGTGAC 59.234 55.000 0.00 0.00 40.30 3.67
2692 3086 1.065926 TGGAGTGACACATGATGAGCC 60.066 52.381 8.59 0.00 0.00 4.70
2698 3092 2.291089 TGACACATGATGAGCCATTGGT 60.291 45.455 0.00 0.00 0.00 3.67
2701 3095 2.494471 CACATGATGAGCCATTGGTGTT 59.506 45.455 0.00 0.00 0.00 3.32
2767 3161 5.220624 GCAGCTTCATCTACAGTTCTGATTG 60.221 44.000 6.83 0.00 0.00 2.67
2785 3179 5.350633 TGATTGTGGCTTATGCTATTTTGC 58.649 37.500 0.13 0.00 39.59 3.68
2790 3184 4.676924 GTGGCTTATGCTATTTTGCGAATC 59.323 41.667 0.13 0.00 39.59 2.52
2801 3195 3.476295 TTTGCGAATCAGAGAATGTGC 57.524 42.857 0.00 0.00 0.00 4.57
2808 3202 2.275134 TCAGAGAATGTGCTTGCCAA 57.725 45.000 0.00 0.00 0.00 4.52
2814 3208 1.997606 GAATGTGCTTGCCAATTCTGC 59.002 47.619 8.94 0.00 0.00 4.26
2817 3211 1.345089 TGTGCTTGCCAATTCTGCAAT 59.655 42.857 11.26 0.00 46.68 3.56
2820 3214 4.401837 TGTGCTTGCCAATTCTGCAATATA 59.598 37.500 11.26 2.30 46.68 0.86
2847 3241 7.230510 GGGGTTATATTGCATTGACAGTGAATA 59.769 37.037 1.52 4.27 0.00 1.75
2917 3311 6.749923 AAATGTTCTCTGCATTTAGACCTC 57.250 37.500 1.96 0.00 42.59 3.85
3004 3401 2.629617 CCAAGAAATTTGACCAGGCTGT 59.370 45.455 14.43 1.17 0.00 4.40
3005 3402 3.070015 CCAAGAAATTTGACCAGGCTGTT 59.930 43.478 14.43 0.00 0.00 3.16
3012 3409 1.691196 TGACCAGGCTGTTCCTTTTG 58.309 50.000 14.43 0.00 44.75 2.44
3046 3443 5.464168 ACATTTTTCATTGCTGCACTACTC 58.536 37.500 0.00 0.00 0.00 2.59
3090 3487 2.073816 GGTATGTTGTGGACCTTGACG 58.926 52.381 0.00 0.00 0.00 4.35
3110 3507 6.170506 TGACGTTTTATATCTGCCTCACTTT 58.829 36.000 0.00 0.00 0.00 2.66
3144 3541 8.718656 AGTTATTCCAATTCTGCTCTTACCTAT 58.281 33.333 0.00 0.00 0.00 2.57
3169 3566 6.433847 TTTTCCTTTCCTGTCAGTCTCATA 57.566 37.500 0.00 0.00 0.00 2.15
3218 3615 7.692908 ATTATTTATGCCGTTTTGTGTATGC 57.307 32.000 0.00 0.00 0.00 3.14
3225 3622 3.181575 GCCGTTTTGTGTATGCAAAAGAC 59.818 43.478 0.00 0.00 45.40 3.01
3227 3624 4.981674 CCGTTTTGTGTATGCAAAAGACAT 59.018 37.500 7.90 0.00 45.40 3.06
3257 3656 4.156739 CCTTTAACTGGATTCTGTTGAGGC 59.843 45.833 6.53 0.00 35.27 4.70
3279 3678 4.106197 CGTCTAATGGTCAGTGCTCTTAC 58.894 47.826 0.00 0.00 0.00 2.34
3289 3688 4.273480 GTCAGTGCTCTTACATGTTGTGTT 59.727 41.667 2.30 0.00 42.29 3.32
3297 3696 6.751888 GCTCTTACATGTTGTGTTGAAAGTTT 59.248 34.615 2.30 0.00 42.29 2.66
3312 3711 5.437060 TGAAAGTTTAGCAGAGAACAACCT 58.563 37.500 0.00 0.00 0.00 3.50
3316 3715 5.059833 AGTTTAGCAGAGAACAACCTCTTG 58.940 41.667 0.00 0.00 41.29 3.02
3319 3718 4.689612 AGCAGAGAACAACCTCTTGTAA 57.310 40.909 0.00 0.00 41.29 2.41
3323 3722 5.504173 GCAGAGAACAACCTCTTGTAAACAC 60.504 44.000 0.00 0.00 41.29 3.32
3434 3857 4.072839 CACCTGATGATGATAGCATTGCT 58.927 43.478 16.63 16.63 43.41 3.91
3442 3865 6.519679 TGATGATAGCATTGCTTTCAGTTT 57.480 33.333 27.72 16.73 46.10 2.66
3468 3897 8.433421 TGTTGTTTGTAGAGAAAGTTCCTTAG 57.567 34.615 0.00 0.00 0.00 2.18
3476 3905 8.738106 TGTAGAGAAAGTTCCTTAGCTAACTAC 58.262 37.037 0.86 8.91 34.91 2.73
3477 3906 6.854778 AGAGAAAGTTCCTTAGCTAACTACG 58.145 40.000 0.86 0.00 34.91 3.51
3479 3908 6.990798 AGAAAGTTCCTTAGCTAACTACGTT 58.009 36.000 0.86 5.58 34.91 3.99
3486 3915 6.567050 TCCTTAGCTAACTACGTTAATGGTG 58.433 40.000 0.86 0.00 0.00 4.17
3502 3931 8.425491 CGTTAATGGTGAATTAGTGATATCGTC 58.575 37.037 0.00 0.00 32.30 4.20
3512 3941 2.860136 AGTGATATCGTCGTGTGCATTG 59.140 45.455 0.00 0.00 0.00 2.82
3562 3992 4.630111 CTGCTCTTTCCCTGATGACTATC 58.370 47.826 0.00 0.00 0.00 2.08
3631 4062 8.889000 CAATTTCAAACAAGTTAGTAACGCTAC 58.111 33.333 7.38 0.00 36.23 3.58
3641 4072 7.219484 AGTTAGTAACGCTACAGACCTTAAA 57.781 36.000 7.38 0.00 36.23 1.52
3649 4080 6.331061 ACGCTACAGACCTTAAATAAGTCAG 58.669 40.000 0.00 0.00 0.00 3.51
3652 4083 7.972277 CGCTACAGACCTTAAATAAGTCAGTTA 59.028 37.037 0.00 0.00 0.00 2.24
3656 4087 9.708092 ACAGACCTTAAATAAGTCAGTTAGTTC 57.292 33.333 0.00 0.00 31.50 3.01
3667 4098 6.913873 AGTCAGTTAGTTCGTGCTTTAAAA 57.086 33.333 0.00 0.00 0.00 1.52
3696 4127 3.667497 TCAGTGCTTCCTCTGTTACTG 57.333 47.619 0.00 0.00 37.47 2.74
3700 4131 4.218635 CAGTGCTTCCTCTGTTACTGTCTA 59.781 45.833 0.00 0.00 32.92 2.59
3704 4135 7.178628 AGTGCTTCCTCTGTTACTGTCTATAAA 59.821 37.037 0.00 0.00 0.00 1.40
3711 4142 9.968870 CCTCTGTTACTGTCTATAAAATACTCC 57.031 37.037 0.00 0.00 0.00 3.85
3712 4143 9.968870 CTCTGTTACTGTCTATAAAATACTCCC 57.031 37.037 0.00 0.00 0.00 4.30
3714 4145 9.968870 CTGTTACTGTCTATAAAATACTCCCTC 57.031 37.037 0.00 0.00 0.00 4.30
3716 4147 6.651975 ACTGTCTATAAAATACTCCCTCCG 57.348 41.667 0.00 0.00 0.00 4.63
3717 4148 6.134754 ACTGTCTATAAAATACTCCCTCCGT 58.865 40.000 0.00 0.00 0.00 4.69
3719 4150 6.371278 TGTCTATAAAATACTCCCTCCGTCT 58.629 40.000 0.00 0.00 0.00 4.18
3720 4151 6.489361 TGTCTATAAAATACTCCCTCCGTCTC 59.511 42.308 0.00 0.00 0.00 3.36
3721 4152 6.489361 GTCTATAAAATACTCCCTCCGTCTCA 59.511 42.308 0.00 0.00 0.00 3.27
3722 4153 7.014038 GTCTATAAAATACTCCCTCCGTCTCAA 59.986 40.741 0.00 0.00 0.00 3.02
3723 4154 4.903045 AAAATACTCCCTCCGTCTCAAA 57.097 40.909 0.00 0.00 0.00 2.69
3724 4155 4.903045 AAATACTCCCTCCGTCTCAAAA 57.097 40.909 0.00 0.00 0.00 2.44
3725 4156 5.437191 AAATACTCCCTCCGTCTCAAAAT 57.563 39.130 0.00 0.00 0.00 1.82
3726 4157 6.555463 AAATACTCCCTCCGTCTCAAAATA 57.445 37.500 0.00 0.00 0.00 1.40
3727 4158 6.555463 AATACTCCCTCCGTCTCAAAATAA 57.445 37.500 0.00 0.00 0.00 1.40
3728 4159 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
3729 4160 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
3730 4161 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
3731 4162 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
3732 4163 3.933332 CCCTCCGTCTCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
3733 4164 4.322801 CCCTCCGTCTCAAAATAAGTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
3734 4165 4.865365 CCTCCGTCTCAAAATAAGTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
3735 4166 5.462530 TCCGTCTCAAAATAAGTGTCTCA 57.537 39.130 0.00 0.00 0.00 3.27
3736 4167 5.849510 TCCGTCTCAAAATAAGTGTCTCAA 58.150 37.500 0.00 0.00 0.00 3.02
3737 4168 5.694910 TCCGTCTCAAAATAAGTGTCTCAAC 59.305 40.000 0.00 0.00 0.00 3.18
3738 4169 5.696724 CCGTCTCAAAATAAGTGTCTCAACT 59.303 40.000 0.00 0.00 0.00 3.16
3739 4170 6.202954 CCGTCTCAAAATAAGTGTCTCAACTT 59.797 38.462 0.00 0.00 42.89 2.66
3740 4171 7.254795 CCGTCTCAAAATAAGTGTCTCAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
3741 4172 7.584123 CGTCTCAAAATAAGTGTCTCAACTTTG 59.416 37.037 0.00 0.00 40.77 2.77
3742 4173 8.398665 GTCTCAAAATAAGTGTCTCAACTTTGT 58.601 33.333 0.00 0.00 40.77 2.83
3743 4174 9.607988 TCTCAAAATAAGTGTCTCAACTTTGTA 57.392 29.630 0.00 0.00 40.77 2.41
3744 4175 9.651718 CTCAAAATAAGTGTCTCAACTTTGTAC 57.348 33.333 0.00 0.00 40.77 2.90
3745 4176 9.391006 TCAAAATAAGTGTCTCAACTTTGTACT 57.609 29.630 0.00 0.00 40.77 2.73
3748 4179 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
3749 4180 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
3750 4181 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
3751 4182 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
3752 4183 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
3753 4184 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
3755 4186 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
3780 4211 8.366671 ACAAAGTTGTACTAAGCTTAAGACAG 57.633 34.615 15.83 6.05 40.16 3.51
3781 4212 7.985752 ACAAAGTTGTACTAAGCTTAAGACAGT 59.014 33.333 15.83 10.85 40.16 3.55
3782 4213 8.827677 CAAAGTTGTACTAAGCTTAAGACAGTT 58.172 33.333 15.83 12.28 0.00 3.16
3790 4221 8.336801 ACTAAGCTTAAGACAGTTATTTTGGG 57.663 34.615 6.67 0.00 0.00 4.12
3791 4222 8.161425 ACTAAGCTTAAGACAGTTATTTTGGGA 58.839 33.333 6.67 0.00 0.00 4.37
3792 4223 6.819397 AGCTTAAGACAGTTATTTTGGGAC 57.181 37.500 6.67 0.00 0.00 4.46
3793 4224 5.411669 AGCTTAAGACAGTTATTTTGGGACG 59.588 40.000 6.67 0.00 0.00 4.79
3794 4225 5.391629 GCTTAAGACAGTTATTTTGGGACGG 60.392 44.000 6.67 0.00 0.00 4.79
3795 4226 4.360951 AAGACAGTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
3796 4227 3.939066 AGACAGTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
3797 4228 3.007635 GACAGTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3798 4229 2.290705 ACAGTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3799 4230 2.026636 CAGTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3800 4231 2.238898 AGTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3801 4232 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3802 4233 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3803 4234 1.272807 TTTTGGGACGGAGGGAGTAG 58.727 55.000 0.00 0.00 0.00 2.57
3804 4235 0.115745 TTTGGGACGGAGGGAGTAGT 59.884 55.000 0.00 0.00 0.00 2.73
3805 4236 0.115745 TTGGGACGGAGGGAGTAGTT 59.884 55.000 0.00 0.00 0.00 2.24
3806 4237 0.115745 TGGGACGGAGGGAGTAGTTT 59.884 55.000 0.00 0.00 0.00 2.66
3807 4238 0.535797 GGGACGGAGGGAGTAGTTTG 59.464 60.000 0.00 0.00 0.00 2.93
3808 4239 1.264295 GGACGGAGGGAGTAGTTTGT 58.736 55.000 0.00 0.00 0.00 2.83
3809 4240 2.450476 GGACGGAGGGAGTAGTTTGTA 58.550 52.381 0.00 0.00 0.00 2.41
3810 4241 2.426381 GGACGGAGGGAGTAGTTTGTAG 59.574 54.545 0.00 0.00 0.00 2.74
3811 4242 1.823610 ACGGAGGGAGTAGTTTGTAGC 59.176 52.381 0.00 0.00 0.00 3.58
3812 4243 1.822990 CGGAGGGAGTAGTTTGTAGCA 59.177 52.381 0.00 0.00 0.00 3.49
3813 4244 2.431057 CGGAGGGAGTAGTTTGTAGCAT 59.569 50.000 0.00 0.00 0.00 3.79
3814 4245 3.635373 CGGAGGGAGTAGTTTGTAGCATA 59.365 47.826 0.00 0.00 0.00 3.14
3815 4246 4.281182 CGGAGGGAGTAGTTTGTAGCATAT 59.719 45.833 0.00 0.00 0.00 1.78
3816 4247 5.475909 CGGAGGGAGTAGTTTGTAGCATATA 59.524 44.000 0.00 0.00 0.00 0.86
3817 4248 6.569994 CGGAGGGAGTAGTTTGTAGCATATAC 60.570 46.154 0.00 0.00 0.00 1.47
3818 4249 6.494146 GGAGGGAGTAGTTTGTAGCATATACT 59.506 42.308 0.00 0.00 0.00 2.12
3819 4250 7.309316 GGAGGGAGTAGTTTGTAGCATATACTC 60.309 44.444 0.00 0.00 38.79 2.59
3821 4252 6.380190 GGAGTAGTTTGTAGCATATACTCCG 58.620 44.000 12.09 0.00 45.43 4.63
3822 4253 6.016443 GGAGTAGTTTGTAGCATATACTCCGT 60.016 42.308 12.09 0.00 45.43 4.69
3823 4254 7.173907 GGAGTAGTTTGTAGCATATACTCCGTA 59.826 40.741 12.09 0.00 45.43 4.02
3824 4255 8.632906 AGTAGTTTGTAGCATATACTCCGTAT 57.367 34.615 0.00 0.00 33.05 3.06
3825 4256 9.075678 AGTAGTTTGTAGCATATACTCCGTATT 57.924 33.333 0.00 0.00 30.79 1.89
3826 4257 9.688592 GTAGTTTGTAGCATATACTCCGTATTT 57.311 33.333 0.00 0.00 30.79 1.40
3827 4258 8.589335 AGTTTGTAGCATATACTCCGTATTTG 57.411 34.615 0.00 0.00 33.05 2.32
3828 4259 8.202137 AGTTTGTAGCATATACTCCGTATTTGT 58.798 33.333 6.40 0.00 32.69 2.83
3829 4260 8.823818 GTTTGTAGCATATACTCCGTATTTGTT 58.176 33.333 6.40 3.84 32.69 2.83
3832 4263 9.850628 TGTAGCATATACTCCGTATTTGTTATC 57.149 33.333 6.40 2.73 31.03 1.75
3835 4266 9.998106 AGCATATACTCCGTATTTGTTATCTTT 57.002 29.630 6.40 0.00 32.69 2.52
3839 4270 6.178239 ACTCCGTATTTGTTATCTTTGTGC 57.822 37.500 0.00 0.00 0.00 4.57
3840 4271 5.938125 ACTCCGTATTTGTTATCTTTGTGCT 59.062 36.000 0.00 0.00 0.00 4.40
3841 4272 7.101054 ACTCCGTATTTGTTATCTTTGTGCTA 58.899 34.615 0.00 0.00 0.00 3.49
3842 4273 7.604927 ACTCCGTATTTGTTATCTTTGTGCTAA 59.395 33.333 0.00 0.00 0.00 3.09
3843 4274 7.970384 TCCGTATTTGTTATCTTTGTGCTAAG 58.030 34.615 0.00 0.00 0.00 2.18
4007 4441 4.630644 TCAAGAAAGCTCTGAATCTGGT 57.369 40.909 0.00 0.00 30.03 4.00
4294 4729 2.143925 GGTCTGACTTTGGCTACACAC 58.856 52.381 7.85 0.00 0.00 3.82
4322 4757 7.402054 TCTAAAGCATCACCTATTTCCAAAGA 58.598 34.615 0.00 0.00 0.00 2.52
4400 4874 6.039616 GCGCATTTTGGATTTCCTTATGTTA 58.960 36.000 0.30 0.00 36.82 2.41
4404 4878 9.034544 GCATTTTGGATTTCCTTATGTTATGTC 57.965 33.333 0.00 0.00 36.82 3.06
4479 4955 7.093992 TCTTTTGTTTACTGGAGGTTGTTTTG 58.906 34.615 0.00 0.00 0.00 2.44
4480 4956 4.993029 TGTTTACTGGAGGTTGTTTTGG 57.007 40.909 0.00 0.00 0.00 3.28
4583 5059 5.181009 TGCCTCTCATGTTCAGAAATACTG 58.819 41.667 0.00 0.00 46.97 2.74
4791 5267 3.396260 TGGTTTAGCTCTTGCGTAAGT 57.604 42.857 13.14 0.00 45.42 2.24
4803 5279 1.638388 GCGTAAGTGTAAACCGGGCC 61.638 60.000 6.32 0.00 41.68 5.80
4932 5419 4.021229 TCCGAGAAGCTGGTAAGATAACA 58.979 43.478 0.00 0.00 0.00 2.41
4982 5470 6.369615 GGCTCATGTTTTTGCATTACTTTGAT 59.630 34.615 0.00 0.00 0.00 2.57
4999 5487 1.908619 TGATAGCTTGGCTCTGGTTCA 59.091 47.619 0.00 0.00 40.44 3.18
5053 5541 1.768077 GGCCTGCTGGGAGGAGTAT 60.768 63.158 12.30 0.00 34.69 2.12
5370 5860 0.739813 AACTGTCCATAAGCCGTCGC 60.740 55.000 0.00 0.00 0.00 5.19
5376 5866 0.034896 CCATAAGCCGTCGCCCTTAT 59.965 55.000 9.34 9.34 35.28 1.73
5380 5870 0.756903 AAGCCGTCGCCCTTATATGT 59.243 50.000 0.00 0.00 34.57 2.29
5414 5904 2.803956 TGCCTGTAAACTCGCTGTAAAC 59.196 45.455 0.00 0.00 0.00 2.01
5419 5909 3.872182 TGTAAACTCGCTGTAAACTTGCA 59.128 39.130 0.00 0.00 0.00 4.08
5435 5925 2.535588 GCAATTGCACCTTTGGCTG 58.464 52.632 25.36 0.00 41.59 4.85
5440 5930 1.769026 TTGCACCTTTGGCTGTGTTA 58.231 45.000 0.00 0.00 34.94 2.41
5458 5948 8.026607 GCTGTGTTATCAATAAGGCTTTGTTTA 58.973 33.333 4.45 0.00 0.00 2.01
5553 6043 2.181196 TCCCCTCAAAACCCCTTGAATT 59.819 45.455 0.00 0.00 34.96 2.17
5555 6045 3.238597 CCCTCAAAACCCCTTGAATTCA 58.761 45.455 3.38 3.38 34.96 2.57
5557 6047 3.640967 CCTCAAAACCCCTTGAATTCACA 59.359 43.478 7.89 0.00 34.96 3.58
5701 6191 7.737607 TCCCCTTATATCCTTGCTACAGAATTA 59.262 37.037 0.00 0.00 0.00 1.40
5754 6244 8.823220 AAGTTGCTACATGGGAATAATTTAGT 57.177 30.769 0.13 0.00 0.00 2.24
5760 6250 7.661847 GCTACATGGGAATAATTTAGTAGCTGT 59.338 37.037 12.46 0.00 45.74 4.40
5808 6298 6.335471 TGCATGACTTGAAATCAATGTCTT 57.665 33.333 18.06 12.93 36.21 3.01
5827 6317 7.384439 TGTCTTATCACAACAACAACTTTGA 57.616 32.000 0.00 0.00 0.00 2.69
5831 6321 7.920151 TCTTATCACAACAACAACTTTGAATGG 59.080 33.333 0.00 0.00 0.00 3.16
5869 6359 6.739112 ACAGAATTTCCTTGCTTAGTTGTTC 58.261 36.000 0.00 0.00 0.00 3.18
5893 6383 9.585099 TTCATCAAATTTTCATACTGTATTGCC 57.415 29.630 0.00 0.00 0.00 4.52
5894 6384 8.970020 TCATCAAATTTTCATACTGTATTGCCT 58.030 29.630 0.00 0.00 0.00 4.75
5895 6385 9.590451 CATCAAATTTTCATACTGTATTGCCTT 57.410 29.630 0.00 0.00 0.00 4.35
5896 6386 9.807649 ATCAAATTTTCATACTGTATTGCCTTC 57.192 29.630 0.00 0.00 0.00 3.46
5897 6387 8.250332 TCAAATTTTCATACTGTATTGCCTTCC 58.750 33.333 0.00 0.00 0.00 3.46
5898 6388 6.715347 ATTTTCATACTGTATTGCCTTCCC 57.285 37.500 0.00 0.00 0.00 3.97
5899 6389 5.450818 TTTCATACTGTATTGCCTTCCCT 57.549 39.130 0.00 0.00 0.00 4.20
5900 6390 4.689612 TCATACTGTATTGCCTTCCCTC 57.310 45.455 0.00 0.00 0.00 4.30
5901 6391 4.037222 TCATACTGTATTGCCTTCCCTCA 58.963 43.478 0.00 0.00 0.00 3.86
5902 6392 4.473196 TCATACTGTATTGCCTTCCCTCAA 59.527 41.667 0.00 0.00 0.00 3.02
5903 6393 3.806949 ACTGTATTGCCTTCCCTCAAA 57.193 42.857 0.00 0.00 0.00 2.69
5904 6394 4.112634 ACTGTATTGCCTTCCCTCAAAA 57.887 40.909 0.00 0.00 0.00 2.44
5905 6395 4.479158 ACTGTATTGCCTTCCCTCAAAAA 58.521 39.130 0.00 0.00 0.00 1.94
6093 6590 7.336931 GTGTACAGATGGATAAACAGGACAAAT 59.663 37.037 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.163290 CCTTCTCCCTTATCCCTTCTACAAC 60.163 48.000 0.00 0.00 0.00 3.32
18 19 0.846870 CTTCCAACCCCCTTCTCCCT 60.847 60.000 0.00 0.00 0.00 4.20
31 32 6.724351 TCATCATTTCTTCCTCATCTTCCAA 58.276 36.000 0.00 0.00 0.00 3.53
53 55 0.914417 CCCTCCTTGGCCCTTACTCA 60.914 60.000 0.00 0.00 0.00 3.41
307 311 1.972660 CTCCGATGACTCCCCCAACC 61.973 65.000 0.00 0.00 0.00 3.77
320 324 3.717294 GGCACCCACACCTCCGAT 61.717 66.667 0.00 0.00 0.00 4.18
416 420 3.069980 GCCTCGTCTCGCCTCACAT 62.070 63.158 0.00 0.00 0.00 3.21
452 502 2.046217 GGGCTCGTTCTTCCCACC 60.046 66.667 0.00 0.00 39.82 4.61
492 542 6.726379 AGGGGAATTAAAGAGGAGAGAAAAG 58.274 40.000 0.00 0.00 0.00 2.27
501 551 4.023980 GGGTTCAAGGGGAATTAAAGAGG 58.976 47.826 0.00 0.00 37.93 3.69
512 562 2.989253 GCGGTTGGGTTCAAGGGG 60.989 66.667 0.00 0.00 32.92 4.79
519 569 1.170290 CGGAAAGAAGCGGTTGGGTT 61.170 55.000 3.70 0.00 39.52 4.11
548 598 2.385315 GTGAAAAGGAAAGAAGCGTGC 58.615 47.619 0.00 0.00 0.00 5.34
549 599 2.618709 AGGTGAAAAGGAAAGAAGCGTG 59.381 45.455 0.00 0.00 0.00 5.34
562 613 0.249953 TTACTGCGCGGAGGTGAAAA 60.250 50.000 31.29 13.93 0.00 2.29
563 614 0.036765 ATTACTGCGCGGAGGTGAAA 60.037 50.000 31.29 18.84 0.00 2.69
564 615 0.818938 TATTACTGCGCGGAGGTGAA 59.181 50.000 31.29 21.13 0.00 3.18
575 626 2.093869 TCCACGTGTCCCTTATTACTGC 60.094 50.000 15.65 0.00 0.00 4.40
619 670 0.993532 TGGAAGCATTAACGTACGCG 59.006 50.000 16.72 3.53 44.93 6.01
620 671 3.350912 CATTGGAAGCATTAACGTACGC 58.649 45.455 16.72 0.00 0.00 4.42
753 824 1.258445 ACGAACCGAGAGAGGCCAAT 61.258 55.000 5.01 0.00 33.69 3.16
1220 1316 2.435059 GGCAAGACGAGACAGCCC 60.435 66.667 0.00 0.00 39.42 5.19
1223 1319 1.153939 CCGAGGCAAGACGAGACAG 60.154 63.158 0.00 0.00 0.00 3.51
1239 1335 2.959707 AGCTAGTGATCCTTCCTTACCG 59.040 50.000 0.00 0.00 0.00 4.02
1283 1379 0.104855 TATGGTTAGCCGCAGCAGAG 59.895 55.000 0.00 0.00 43.56 3.35
1284 1380 0.758734 ATATGGTTAGCCGCAGCAGA 59.241 50.000 0.00 0.00 43.56 4.26
1285 1381 1.151668 GATATGGTTAGCCGCAGCAG 58.848 55.000 0.00 0.00 43.56 4.24
1286 1382 0.250295 GGATATGGTTAGCCGCAGCA 60.250 55.000 0.00 0.00 43.56 4.41
1287 1383 0.250295 TGGATATGGTTAGCCGCAGC 60.250 55.000 0.00 0.00 36.63 5.25
1310 1406 1.627329 CCATGGACGAGGATGGATCAT 59.373 52.381 5.56 0.00 41.63 2.45
1331 1427 3.051081 ACCTTGAGCAGCTAAACAGAG 57.949 47.619 0.00 0.00 0.00 3.35
1335 1431 3.127721 GGATCAACCTTGAGCAGCTAAAC 59.872 47.826 0.00 0.00 44.90 2.01
1371 1467 1.223487 TGGGACAAATCGGCTAGGC 59.777 57.895 6.15 6.15 31.92 3.93
1386 1488 0.537371 GTCACTGGGGTTGAGTTGGG 60.537 60.000 0.00 0.00 0.00 4.12
1397 1499 0.112218 TTGAACATGGGGTCACTGGG 59.888 55.000 0.00 0.00 0.00 4.45
1401 1503 3.417101 TGTACATTGAACATGGGGTCAC 58.583 45.455 0.00 0.00 0.00 3.67
1442 1544 0.392863 TTCACCGAGCATGTCATGGG 60.393 55.000 14.64 9.59 0.00 4.00
1445 1547 1.402968 GCATTTCACCGAGCATGTCAT 59.597 47.619 0.00 0.00 0.00 3.06
1457 1559 4.815846 ACAGATTTTGTTTGGGCATTTCAC 59.184 37.500 0.00 0.00 36.31 3.18
1492 1594 3.120792 CGTACACCAAGGATAATGACGG 58.879 50.000 0.00 0.00 0.00 4.79
1586 1925 8.950210 ACAAACTGAGATTATCATGACGAAAAT 58.050 29.630 0.00 0.00 37.28 1.82
1590 1929 5.291858 GCACAAACTGAGATTATCATGACGA 59.708 40.000 0.00 0.00 37.28 4.20
1596 1935 6.071165 TGAGAGAGCACAAACTGAGATTATCA 60.071 38.462 0.00 0.00 36.21 2.15
1613 1952 0.817013 CAGAGTGACCCTGAGAGAGC 59.183 60.000 0.00 0.00 33.65 4.09
1622 1961 1.457346 CCAAAGATGCAGAGTGACCC 58.543 55.000 0.00 0.00 0.00 4.46
1625 1964 1.361204 TCCCCAAAGATGCAGAGTGA 58.639 50.000 0.00 0.00 0.00 3.41
1626 1965 2.431954 ATCCCCAAAGATGCAGAGTG 57.568 50.000 0.00 0.00 0.00 3.51
1632 1971 5.360714 TGATGAGTAAAATCCCCAAAGATGC 59.639 40.000 0.00 0.00 0.00 3.91
1651 1990 0.327480 ATGGGTAGGGTGGCTGATGA 60.327 55.000 0.00 0.00 0.00 2.92
1653 1992 0.624500 ACATGGGTAGGGTGGCTGAT 60.625 55.000 0.00 0.00 0.00 2.90
1655 1994 0.039618 AAACATGGGTAGGGTGGCTG 59.960 55.000 0.00 0.00 0.00 4.85
1656 1995 0.783850 AAAACATGGGTAGGGTGGCT 59.216 50.000 0.00 0.00 0.00 4.75
1673 2012 2.167693 ACAGATACGATGCTTCCCGAAA 59.832 45.455 0.00 0.00 0.00 3.46
1676 2015 3.057526 TCATACAGATACGATGCTTCCCG 60.058 47.826 0.00 0.00 0.00 5.14
1687 2026 2.069273 GTGCGCCCATCATACAGATAC 58.931 52.381 4.18 0.00 34.43 2.24
1692 2031 1.375853 GCAAGTGCGCCCATCATACA 61.376 55.000 4.18 0.00 0.00 2.29
1693 2032 1.356624 GCAAGTGCGCCCATCATAC 59.643 57.895 4.18 0.00 0.00 2.39
1707 2092 1.135024 GTTGGTGTGCATATGGGCAAG 60.135 52.381 4.56 0.00 46.93 4.01
1710 2095 1.134946 GAAGTTGGTGTGCATATGGGC 59.865 52.381 4.56 0.00 0.00 5.36
1723 2108 1.539388 TGCACGCCATTTAGAAGTTGG 59.461 47.619 0.00 0.00 0.00 3.77
1741 2126 6.199719 GCCATAAAAATAGAGAATGCAAGTGC 59.800 38.462 0.00 0.00 42.50 4.40
1742 2127 7.259882 TGCCATAAAAATAGAGAATGCAAGTG 58.740 34.615 0.00 0.00 0.00 3.16
1743 2128 7.408756 TGCCATAAAAATAGAGAATGCAAGT 57.591 32.000 0.00 0.00 0.00 3.16
1746 2131 7.123997 TCCTTTGCCATAAAAATAGAGAATGCA 59.876 33.333 0.00 0.00 0.00 3.96
1747 2132 7.436376 GTCCTTTGCCATAAAAATAGAGAATGC 59.564 37.037 0.00 0.00 0.00 3.56
1748 2133 8.689972 AGTCCTTTGCCATAAAAATAGAGAATG 58.310 33.333 0.00 0.00 0.00 2.67
1749 2134 8.829373 AGTCCTTTGCCATAAAAATAGAGAAT 57.171 30.769 0.00 0.00 0.00 2.40
1750 2135 8.109634 AGAGTCCTTTGCCATAAAAATAGAGAA 58.890 33.333 0.00 0.00 0.00 2.87
1751 2136 7.633789 AGAGTCCTTTGCCATAAAAATAGAGA 58.366 34.615 0.00 0.00 0.00 3.10
1752 2137 7.872113 AGAGTCCTTTGCCATAAAAATAGAG 57.128 36.000 0.00 0.00 0.00 2.43
1756 2141 5.011943 TGCAAGAGTCCTTTGCCATAAAAAT 59.988 36.000 12.96 0.00 0.00 1.82
1758 2143 3.894427 TGCAAGAGTCCTTTGCCATAAAA 59.106 39.130 12.96 0.00 0.00 1.52
1784 2169 4.380023 GCGATTTTAGGTGGTGTTATGCAA 60.380 41.667 0.00 0.00 0.00 4.08
1785 2170 3.127895 GCGATTTTAGGTGGTGTTATGCA 59.872 43.478 0.00 0.00 0.00 3.96
1786 2171 3.488553 GGCGATTTTAGGTGGTGTTATGC 60.489 47.826 0.00 0.00 0.00 3.14
1787 2172 3.945285 AGGCGATTTTAGGTGGTGTTATG 59.055 43.478 0.00 0.00 0.00 1.90
1788 2173 4.230745 AGGCGATTTTAGGTGGTGTTAT 57.769 40.909 0.00 0.00 0.00 1.89
1790 2175 2.579410 AGGCGATTTTAGGTGGTGTT 57.421 45.000 0.00 0.00 0.00 3.32
1791 2176 2.579410 AAGGCGATTTTAGGTGGTGT 57.421 45.000 0.00 0.00 0.00 4.16
1792 2177 5.339990 CAATAAAGGCGATTTTAGGTGGTG 58.660 41.667 0.00 0.00 32.01 4.17
1793 2178 4.142249 GCAATAAAGGCGATTTTAGGTGGT 60.142 41.667 0.00 0.00 32.01 4.16
1794 2179 4.142271 TGCAATAAAGGCGATTTTAGGTGG 60.142 41.667 0.00 0.00 32.01 4.61
1795 2180 4.992688 TGCAATAAAGGCGATTTTAGGTG 58.007 39.130 0.00 0.00 32.01 4.00
1796 2181 5.652994 TTGCAATAAAGGCGATTTTAGGT 57.347 34.783 0.00 0.00 32.01 3.08
1797 2182 6.418819 CAGATTGCAATAAAGGCGATTTTAGG 59.581 38.462 12.97 0.00 35.53 2.69
1821 2206 6.916360 AATGAAAAGGTCTTTATTCTGGCA 57.084 33.333 0.00 0.00 31.63 4.92
1822 2207 9.875691 ATAAAATGAAAAGGTCTTTATTCTGGC 57.124 29.630 0.00 0.00 31.63 4.85
1848 2234 6.882140 TCACCAAAACTGAACAAGAGACTTTA 59.118 34.615 0.00 0.00 0.00 1.85
1849 2235 5.710099 TCACCAAAACTGAACAAGAGACTTT 59.290 36.000 0.00 0.00 0.00 2.66
1850 2236 5.253330 TCACCAAAACTGAACAAGAGACTT 58.747 37.500 0.00 0.00 0.00 3.01
1851 2237 4.843728 TCACCAAAACTGAACAAGAGACT 58.156 39.130 0.00 0.00 0.00 3.24
1864 2250 9.736023 CTAAAGATATATTTGCCTCACCAAAAC 57.264 33.333 5.58 0.00 38.12 2.43
2003 2391 0.463474 GCCACCTGCTTCATCTCCTC 60.463 60.000 0.00 0.00 36.87 3.71
2025 2413 4.256920 CAGAACTATCCAACTGTTCCCTG 58.743 47.826 0.00 0.00 40.42 4.45
2108 2496 3.868757 TTTCTGTATCAGGACAGGACG 57.131 47.619 3.87 0.00 45.79 4.79
2127 2515 7.634671 TGTCAATGATATGAGCTCAATGTTT 57.365 32.000 22.50 6.22 0.00 2.83
2129 2517 7.649057 CATTGTCAATGATATGAGCTCAATGT 58.351 34.615 22.50 9.60 41.46 2.71
2178 2566 1.599542 GCTTGCATGTAACGAGATCCC 59.400 52.381 1.14 0.00 0.00 3.85
2315 2703 4.507756 CGATCTCGGATACAAAAATCAGCA 59.492 41.667 0.00 0.00 35.37 4.41
2316 2704 5.011451 CGATCTCGGATACAAAAATCAGC 57.989 43.478 0.00 0.00 35.37 4.26
2387 2775 6.849085 ACATGCCAAAATGTACATAAAGGA 57.151 33.333 19.09 7.78 39.01 3.36
2389 2777 7.322664 AGGAACATGCCAAAATGTACATAAAG 58.677 34.615 9.21 1.71 39.89 1.85
2393 2781 5.743636 AAGGAACATGCCAAAATGTACAT 57.256 34.783 1.41 1.41 39.89 2.29
2417 2805 5.467735 GTGAAAAACTCTTACTAAAGGCGGA 59.532 40.000 0.00 0.00 33.22 5.54
2418 2806 5.469084 AGTGAAAAACTCTTACTAAAGGCGG 59.531 40.000 0.00 0.00 31.64 6.13
2419 2807 6.541111 AGTGAAAAACTCTTACTAAAGGCG 57.459 37.500 0.00 0.00 31.64 5.52
2420 2808 9.582431 AAAAAGTGAAAAACTCTTACTAAAGGC 57.418 29.630 0.00 0.00 38.56 4.35
2459 2851 6.399639 CCACAAGGTTACCAAAGTACAAAT 57.600 37.500 3.51 0.00 0.00 2.32
2460 2852 5.838531 CCACAAGGTTACCAAAGTACAAA 57.161 39.130 3.51 0.00 0.00 2.83
2500 2892 2.839975 TCAGTAACGCCAATTGTGTCA 58.160 42.857 4.43 0.00 36.45 3.58
2508 2900 5.527951 TGTTTAGTGAAATCAGTAACGCCAA 59.472 36.000 9.63 0.00 40.36 4.52
2512 2904 8.332464 TCAGTTTGTTTAGTGAAATCAGTAACG 58.668 33.333 9.63 0.00 40.36 3.18
2540 2932 6.763610 ACCTAGACTTCTGAGTGAAACAAAAG 59.236 38.462 0.00 0.00 41.43 2.27
2606 2998 9.529823 ACATTAATGATGGAGCATGAGAATTAT 57.470 29.630 22.16 0.00 40.21 1.28
2630 3024 9.349713 ACATTAAAATAAGGTCAACTCTGAACA 57.650 29.630 0.00 0.00 42.23 3.18
2671 3065 2.005451 GCTCATCATGTGTCACTCCAC 58.995 52.381 4.27 0.00 35.86 4.02
2680 3074 2.097036 ACACCAATGGCTCATCATGTG 58.903 47.619 0.00 0.00 0.00 3.21
2686 3080 7.093377 ACAATACATTAAACACCAATGGCTCAT 60.093 33.333 0.00 0.00 37.64 2.90
2687 3081 6.210385 ACAATACATTAAACACCAATGGCTCA 59.790 34.615 0.00 0.00 37.64 4.26
2698 3092 9.579768 GCCATGTTTCATACAATACATTAAACA 57.420 29.630 0.00 0.00 40.89 2.83
2701 3095 8.743714 TGTGCCATGTTTCATACAATACATTAA 58.256 29.630 0.00 0.00 40.89 1.40
2722 3116 0.462581 TGCTGCTAGTGCTATGTGCC 60.463 55.000 0.00 0.00 42.00 5.01
2728 3122 0.812811 GCTGCATGCTGCTAGTGCTA 60.813 55.000 34.29 4.66 45.31 3.49
2729 3123 2.113433 GCTGCATGCTGCTAGTGCT 61.113 57.895 34.29 0.00 45.31 4.40
2730 3124 2.408022 GCTGCATGCTGCTAGTGC 59.592 61.111 34.29 16.37 45.31 4.40
2767 3161 3.691049 TCGCAAAATAGCATAAGCCAC 57.309 42.857 0.00 0.00 43.56 5.01
2785 3179 2.223203 GGCAAGCACATTCTCTGATTCG 60.223 50.000 0.00 0.00 0.00 3.34
2790 3184 3.192844 AGAATTGGCAAGCACATTCTCTG 59.807 43.478 5.96 0.00 0.00 3.35
2817 3211 7.882791 CACTGTCAATGCAATATAACCCCTATA 59.117 37.037 0.00 0.00 0.00 1.31
2820 3214 4.889409 CACTGTCAATGCAATATAACCCCT 59.111 41.667 0.00 0.00 0.00 4.79
2847 3241 9.466497 ACTGATGGTCTAAATTACATCACAATT 57.534 29.630 0.00 0.00 43.23 2.32
2911 3305 1.722034 TGTTGGCTGAAGAGAGGTCT 58.278 50.000 0.00 0.00 32.81 3.85
2917 3311 2.877168 GCATAGGATGTTGGCTGAAGAG 59.123 50.000 0.00 0.00 0.00 2.85
2978 3375 5.365314 AGCCTGGTCAAATTTCTTGGTTTAA 59.635 36.000 0.00 0.00 0.00 1.52
2987 3384 3.303881 GGAACAGCCTGGTCAAATTTC 57.696 47.619 12.63 0.00 35.30 2.17
3004 3401 3.295093 TGTCTGCAATGACCAAAAGGAA 58.705 40.909 3.85 0.00 36.21 3.36
3005 3402 2.942804 TGTCTGCAATGACCAAAAGGA 58.057 42.857 3.85 0.00 36.21 3.36
3012 3409 5.390145 GCAATGAAAAATGTCTGCAATGACC 60.390 40.000 3.85 0.00 36.21 4.02
3046 3443 1.595489 GCCTTTTGATACTGCATCGCG 60.595 52.381 0.00 0.00 36.33 5.87
3090 3487 7.862873 GGCAATAAAGTGAGGCAGATATAAAAC 59.137 37.037 0.00 0.00 0.00 2.43
3110 3507 7.290061 AGCAGAATTGGAATAACTAGGCAATA 58.710 34.615 0.00 0.00 0.00 1.90
3149 3546 5.721480 TCAATATGAGACTGACAGGAAAGGA 59.279 40.000 7.51 0.00 0.00 3.36
3195 3592 6.621613 TGCATACACAAAACGGCATAAATAA 58.378 32.000 0.00 0.00 0.00 1.40
3225 3622 9.784531 ACAGAATCCAGTTAAAGGTCATATATG 57.215 33.333 6.36 6.36 0.00 1.78
3227 3624 9.613428 CAACAGAATCCAGTTAAAGGTCATATA 57.387 33.333 0.00 0.00 0.00 0.86
3257 3656 2.949451 AGAGCACTGACCATTAGACG 57.051 50.000 0.00 0.00 0.00 4.18
3279 3678 6.264832 TCTGCTAAACTTTCAACACAACATG 58.735 36.000 0.00 0.00 0.00 3.21
3289 3688 5.437060 AGGTTGTTCTCTGCTAAACTTTCA 58.563 37.500 0.00 0.00 0.00 2.69
3297 3696 5.801531 TTACAAGAGGTTGTTCTCTGCTA 57.198 39.130 0.00 0.00 45.00 3.49
3316 3715 7.120579 TGGATCCAACATATGTCTTGTGTTTAC 59.879 37.037 13.46 0.00 34.09 2.01
3319 3718 5.569355 TGGATCCAACATATGTCTTGTGTT 58.431 37.500 13.46 0.00 36.57 3.32
3323 3722 5.954296 GGATGGATCCAACATATGTCTTG 57.046 43.478 20.67 4.65 46.38 3.02
3404 3803 8.929260 TGCTATCATCATCAGGTGAAAAATAT 57.071 30.769 0.00 0.00 40.97 1.28
3406 3805 7.834881 ATGCTATCATCATCAGGTGAAAAAT 57.165 32.000 0.00 0.00 40.97 1.82
3407 3806 7.485810 CAATGCTATCATCATCAGGTGAAAAA 58.514 34.615 0.00 0.00 40.97 1.94
3409 3808 5.009310 GCAATGCTATCATCATCAGGTGAAA 59.991 40.000 0.00 0.00 40.97 2.69
3410 3809 4.517832 GCAATGCTATCATCATCAGGTGAA 59.482 41.667 0.00 0.00 40.97 3.18
3411 3810 4.070009 GCAATGCTATCATCATCAGGTGA 58.930 43.478 0.00 0.00 42.06 4.02
3412 3811 4.072839 AGCAATGCTATCATCATCAGGTG 58.927 43.478 5.69 0.00 36.99 4.00
3413 3812 4.368565 AGCAATGCTATCATCATCAGGT 57.631 40.909 5.69 0.00 36.99 4.00
3427 3850 4.863152 ACAACAAAACTGAAAGCAATGC 57.137 36.364 0.00 0.00 37.60 3.56
3434 3857 9.405587 CTTTCTCTACAAACAACAAAACTGAAA 57.594 29.630 0.00 0.00 0.00 2.69
3476 3905 8.294341 ACGATATCACTAATTCACCATTAACG 57.706 34.615 3.12 0.00 0.00 3.18
3477 3906 8.425491 CGACGATATCACTAATTCACCATTAAC 58.575 37.037 3.12 0.00 0.00 2.01
3479 3908 7.593644 CACGACGATATCACTAATTCACCATTA 59.406 37.037 0.00 0.00 0.00 1.90
3486 3915 4.738252 TGCACACGACGATATCACTAATTC 59.262 41.667 0.00 0.00 0.00 2.17
3502 3931 0.098200 CCTGCTCATCAATGCACACG 59.902 55.000 0.00 0.00 35.20 4.49
3512 3941 3.421844 ACCCAAGTAAAACCTGCTCATC 58.578 45.455 0.00 0.00 0.00 2.92
3562 3992 1.060713 GTCCAATCACGACACTCACG 58.939 55.000 0.00 0.00 0.00 4.35
3631 4062 8.861101 CGAACTAACTGACTTATTTAAGGTCTG 58.139 37.037 2.63 0.00 37.62 3.51
3641 4072 8.597662 TTTAAAGCACGAACTAACTGACTTAT 57.402 30.769 0.00 0.00 0.00 1.73
3656 4087 9.091255 GCACTGAAAATTTAATTTTAAAGCACG 57.909 29.630 14.62 9.30 42.15 5.34
3667 4098 7.530426 ACAGAGGAAGCACTGAAAATTTAAT 57.470 32.000 0.00 0.00 37.54 1.40
3672 4103 5.471456 CAGTAACAGAGGAAGCACTGAAAAT 59.529 40.000 0.00 0.00 36.37 1.82
3679 4110 3.669251 AGACAGTAACAGAGGAAGCAC 57.331 47.619 0.00 0.00 0.00 4.40
3680 4111 7.476540 TTTATAGACAGTAACAGAGGAAGCA 57.523 36.000 0.00 0.00 0.00 3.91
3681 4112 8.950208 ATTTTATAGACAGTAACAGAGGAAGC 57.050 34.615 0.00 0.00 0.00 3.86
3686 4117 9.968870 GGGAGTATTTTATAGACAGTAACAGAG 57.031 37.037 0.00 0.00 0.00 3.35
3696 4127 6.489361 TGAGACGGAGGGAGTATTTTATAGAC 59.511 42.308 0.00 0.00 0.00 2.59
3700 4131 6.555463 TTTGAGACGGAGGGAGTATTTTAT 57.445 37.500 0.00 0.00 0.00 1.40
3704 4135 6.156429 ACTTATTTTGAGACGGAGGGAGTATT 59.844 38.462 0.00 0.00 0.00 1.89
3708 4139 4.184629 CACTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
3710 4141 3.933332 GACACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
3711 4142 4.822026 AGACACTTATTTTGAGACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
3712 4143 5.470368 TGAGACACTTATTTTGAGACGGAG 58.530 41.667 0.00 0.00 0.00 4.63
3714 4145 5.696724 AGTTGAGACACTTATTTTGAGACGG 59.303 40.000 0.00 0.00 0.00 4.79
3716 4147 8.398665 ACAAAGTTGAGACACTTATTTTGAGAC 58.601 33.333 0.00 0.00 35.87 3.36
3717 4148 8.506168 ACAAAGTTGAGACACTTATTTTGAGA 57.494 30.769 0.00 0.00 35.87 3.27
3719 4150 9.391006 AGTACAAAGTTGAGACACTTATTTTGA 57.609 29.630 0.00 0.00 35.87 2.69
3722 4153 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
3723 4154 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
3724 4155 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
3725 4156 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
3726 4157 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
3727 4158 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
3728 4159 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
3729 4160 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
3730 4161 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
3754 4185 9.472361 CTGTCTTAAGCTTAGTACAACTTTGTA 57.528 33.333 18.24 0.00 42.35 2.41
3755 4186 7.985752 ACTGTCTTAAGCTTAGTACAACTTTGT 59.014 33.333 18.24 12.12 44.86 2.83
3756 4187 8.366671 ACTGTCTTAAGCTTAGTACAACTTTG 57.633 34.615 18.24 11.67 0.00 2.77
3757 4188 8.959705 AACTGTCTTAAGCTTAGTACAACTTT 57.040 30.769 18.24 11.70 0.00 2.66
3764 4195 9.444600 CCCAAAATAACTGTCTTAAGCTTAGTA 57.555 33.333 6.24 0.00 0.00 1.82
3765 4196 8.161425 TCCCAAAATAACTGTCTTAAGCTTAGT 58.839 33.333 6.24 0.00 0.00 2.24
3766 4197 8.451748 GTCCCAAAATAACTGTCTTAAGCTTAG 58.548 37.037 6.24 0.00 0.00 2.18
3767 4198 7.118680 CGTCCCAAAATAACTGTCTTAAGCTTA 59.881 37.037 0.86 0.86 0.00 3.09
3768 4199 6.072673 CGTCCCAAAATAACTGTCTTAAGCTT 60.073 38.462 3.48 3.48 0.00 3.74
3769 4200 5.411669 CGTCCCAAAATAACTGTCTTAAGCT 59.588 40.000 0.00 0.00 0.00 3.74
3770 4201 5.391629 CCGTCCCAAAATAACTGTCTTAAGC 60.392 44.000 0.00 0.00 0.00 3.09
3771 4202 5.935789 TCCGTCCCAAAATAACTGTCTTAAG 59.064 40.000 0.00 0.00 0.00 1.85
3772 4203 5.867330 TCCGTCCCAAAATAACTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
3773 4204 5.484715 CTCCGTCCCAAAATAACTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
3774 4205 4.324267 CTCCGTCCCAAAATAACTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
3775 4206 3.307480 CCTCCGTCCCAAAATAACTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3776 4207 3.007635 CCTCCGTCCCAAAATAACTGTC 58.992 50.000 0.00 0.00 0.00 3.51
3777 4208 2.290705 CCCTCCGTCCCAAAATAACTGT 60.291 50.000 0.00 0.00 0.00 3.55
3778 4209 2.026636 TCCCTCCGTCCCAAAATAACTG 60.027 50.000 0.00 0.00 0.00 3.16
3779 4210 2.238898 CTCCCTCCGTCCCAAAATAACT 59.761 50.000 0.00 0.00 0.00 2.24
3780 4211 2.026542 ACTCCCTCCGTCCCAAAATAAC 60.027 50.000 0.00 0.00 0.00 1.89
3781 4212 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3782 4213 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3783 4214 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
3784 4215 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
3785 4216 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3786 4217 0.115745 AACTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
3787 4218 0.115745 AAACTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
3788 4219 0.535797 CAAACTACTCCCTCCGTCCC 59.464 60.000 0.00 0.00 0.00 4.46
3789 4220 1.264295 ACAAACTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
3790 4221 2.159268 GCTACAAACTACTCCCTCCGTC 60.159 54.545 0.00 0.00 0.00 4.79
3791 4222 1.823610 GCTACAAACTACTCCCTCCGT 59.176 52.381 0.00 0.00 0.00 4.69
3792 4223 1.822990 TGCTACAAACTACTCCCTCCG 59.177 52.381 0.00 0.00 0.00 4.63
3793 4224 5.810080 ATATGCTACAAACTACTCCCTCC 57.190 43.478 0.00 0.00 0.00 4.30
3794 4225 7.309316 GGAGTATATGCTACAAACTACTCCCTC 60.309 44.444 13.22 0.00 44.82 4.30
3795 4226 6.494146 GGAGTATATGCTACAAACTACTCCCT 59.506 42.308 13.22 0.00 44.82 4.20
3796 4227 6.569994 CGGAGTATATGCTACAAACTACTCCC 60.570 46.154 16.77 4.42 46.51 4.30
3797 4228 6.016443 ACGGAGTATATGCTACAAACTACTCC 60.016 42.308 13.92 13.92 46.08 3.85
3798 4229 6.968250 ACGGAGTATATGCTACAAACTACTC 58.032 40.000 3.76 0.00 41.94 2.59
3799 4230 6.956202 ACGGAGTATATGCTACAAACTACT 57.044 37.500 3.76 0.00 41.94 2.57
3817 4248 6.422776 AGCACAAAGATAACAAATACGGAG 57.577 37.500 0.00 0.00 0.00 4.63
3818 4249 7.820386 TCTTAGCACAAAGATAACAAATACGGA 59.180 33.333 0.00 0.00 30.54 4.69
3819 4250 7.970384 TCTTAGCACAAAGATAACAAATACGG 58.030 34.615 0.00 0.00 30.54 4.02
3884 4318 5.627735 CGCTGCATATTCTCCTATGGGTAAT 60.628 44.000 0.00 0.00 31.11 1.89
4007 4441 0.035881 CCTCAGCTTCAGCCAGTTCA 59.964 55.000 0.00 0.00 43.38 3.18
4163 4597 3.100817 CAATACTACAACGCTGCAATGC 58.899 45.455 0.00 0.00 0.00 3.56
4255 4689 4.706962 AGACCTCCCAAATTTATCTTGCAC 59.293 41.667 0.00 0.00 0.00 4.57
4263 4697 5.076873 CCAAAGTCAGACCTCCCAAATTTA 58.923 41.667 0.00 0.00 0.00 1.40
4294 4729 7.630242 TGGAAATAGGTGATGCTTTAGAAAG 57.370 36.000 0.00 0.00 39.03 2.62
4322 4757 9.765795 AGTAAAGCAAAAGATTACGCTATATCT 57.234 29.630 0.00 0.00 35.28 1.98
4479 4955 4.911514 TTTTCAGTGAAGCCTACAAACC 57.088 40.909 5.56 0.00 0.00 3.27
4480 4956 5.915196 GTGATTTTCAGTGAAGCCTACAAAC 59.085 40.000 5.56 0.00 0.00 2.93
4583 5059 2.349817 CGGCAGTGATTGTTTGACAGAC 60.350 50.000 0.00 0.00 0.00 3.51
4982 5470 3.711190 TCATATGAACCAGAGCCAAGCTA 59.289 43.478 1.98 0.00 39.88 3.32
5053 5541 2.395654 GGCGGCGAATAACAAAAACAA 58.604 42.857 12.98 0.00 0.00 2.83
5209 5697 6.257849 ACACGAATGCCTAATTACATACAGTG 59.742 38.462 0.00 12.06 34.30 3.66
5370 5860 4.585162 ACAGGTCTCTCGAACATATAAGGG 59.415 45.833 0.00 0.00 0.00 3.95
5376 5866 1.476891 GGCACAGGTCTCTCGAACATA 59.523 52.381 0.00 0.00 0.00 2.29
5380 5870 0.827925 ACAGGCACAGGTCTCTCGAA 60.828 55.000 0.00 0.00 0.00 3.71
5419 5909 1.122227 ACACAGCCAAAGGTGCAATT 58.878 45.000 0.00 0.00 45.66 2.32
5429 5919 4.599041 AGCCTTATTGATAACACAGCCAA 58.401 39.130 0.00 0.00 0.00 4.52
5432 5922 5.954335 ACAAAGCCTTATTGATAACACAGC 58.046 37.500 0.00 0.00 0.00 4.40
5440 5930 9.740710 ACTTCTACTAAACAAAGCCTTATTGAT 57.259 29.630 0.00 0.00 0.00 2.57
5458 5948 2.225908 ACCTCCCCAATCCACTTCTACT 60.226 50.000 0.00 0.00 0.00 2.57
5553 6043 1.153539 TGGATGGAGGGGTTTTGTGA 58.846 50.000 0.00 0.00 0.00 3.58
5555 6045 0.856982 TGTGGATGGAGGGGTTTTGT 59.143 50.000 0.00 0.00 0.00 2.83
5557 6047 2.559705 GGATTGTGGATGGAGGGGTTTT 60.560 50.000 0.00 0.00 0.00 2.43
5766 6256 3.587923 GCAAAATTATGTTGCTGCTGGA 58.412 40.909 12.47 0.00 46.31 3.86
5804 6294 8.745837 CATTCAAAGTTGTTGTTGTGATAAGAC 58.254 33.333 0.00 0.00 0.00 3.01
5808 6298 5.982516 GCCATTCAAAGTTGTTGTTGTGATA 59.017 36.000 0.00 0.00 0.00 2.15
5827 6317 6.463995 TTCTGTTTGTAGTTTCAAGCCATT 57.536 33.333 0.00 0.00 0.00 3.16
5831 6321 7.203218 AGGAAATTCTGTTTGTAGTTTCAAGC 58.797 34.615 0.00 0.00 0.00 4.01
5869 6359 9.590451 AAGGCAATACAGTATGAAAATTTGATG 57.410 29.630 0.00 0.00 39.69 3.07
5915 6405 9.862149 TCCACTCTCAGATTATATAACACAGTA 57.138 33.333 0.00 0.00 0.00 2.74
5916 6406 8.768501 TCCACTCTCAGATTATATAACACAGT 57.231 34.615 0.00 0.00 0.00 3.55
5917 6407 9.072375 TCTCCACTCTCAGATTATATAACACAG 57.928 37.037 0.00 0.00 0.00 3.66
5918 6408 8.996651 TCTCCACTCTCAGATTATATAACACA 57.003 34.615 0.00 0.00 0.00 3.72
5995 6485 8.588472 TGGTTCTCCAATATCAGAGTATATGTG 58.412 37.037 2.78 0.00 41.25 3.21
6065 6562 6.070251 TGTCCTGTTTATCCATCTGTACACAT 60.070 38.462 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.