Multiple sequence alignment - TraesCS2D01G070300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G070300 chr2D 100.000 4392 0 0 1 4392 29534438 29530047 0.000000e+00 8111.0
1 TraesCS2D01G070300 chr2D 98.361 305 5 0 1 305 29539227 29538923 1.800000e-148 536.0
2 TraesCS2D01G070300 chr2D 96.508 315 9 2 1 314 635445375 635445062 1.810000e-143 520.0
3 TraesCS2D01G070300 chr2D 97.049 305 9 0 1 305 635450168 635449864 8.420000e-142 514.0
4 TraesCS2D01G070300 chr2B 89.584 4157 291 71 300 4392 47644973 47640895 0.000000e+00 5147.0
5 TraesCS2D01G070300 chr2B 88.623 3841 276 52 592 4388 47544427 47540704 0.000000e+00 4523.0
6 TraesCS2D01G070300 chr2B 78.140 828 153 20 2570 3392 47746420 47747224 6.560000e-138 501.0
7 TraesCS2D01G070300 chr2B 78.140 828 153 20 2570 3392 47818072 47818876 6.560000e-138 501.0
8 TraesCS2D01G070300 chr2B 77.899 828 155 20 2570 3392 47776105 47776909 1.420000e-134 490.0
9 TraesCS2D01G070300 chr2B 86.130 447 62 0 998 1444 47743871 47744317 2.380000e-132 483.0
10 TraesCS2D01G070300 chr2B 85.746 449 60 3 998 1444 47684163 47684609 5.140000e-129 472.0
11 TraesCS2D01G070300 chr2B 85.746 449 60 3 998 1444 47709842 47710288 5.140000e-129 472.0
12 TraesCS2D01G070300 chr2A 91.000 2900 201 28 1529 4392 31835932 31833057 0.000000e+00 3855.0
13 TraesCS2D01G070300 chr2A 90.958 1117 62 15 452 1536 31837199 31836090 0.000000e+00 1467.0
14 TraesCS2D01G070300 chr2A 78.545 825 155 16 2570 3392 31898689 31899493 1.400000e-144 523.0
15 TraesCS2D01G070300 chr2A 94.771 153 8 0 300 452 31839009 31838857 5.680000e-59 239.0
16 TraesCS2D01G070300 chr1A 79.044 1088 195 22 2314 3394 104580389 104581450 0.000000e+00 715.0
17 TraesCS2D01G070300 chr1A 95.425 306 13 1 1 305 5149810 5149505 1.840000e-133 486.0
18 TraesCS2D01G070300 chr1A 85.523 449 64 1 1001 1449 104578971 104579418 6.650000e-128 468.0
19 TraesCS2D01G070300 chr6B 88.455 563 50 4 2872 3434 689994140 689994687 0.000000e+00 665.0
20 TraesCS2D01G070300 chr1B 77.838 1101 214 19 2299 3394 150994738 150995813 0.000000e+00 654.0
21 TraesCS2D01G070300 chr4D 96.990 299 9 0 1 299 367787161 367787459 1.820000e-138 503.0
22 TraesCS2D01G070300 chr4D 95.667 300 13 0 1 300 367791955 367792254 2.380000e-132 483.0
23 TraesCS2D01G070300 chr7D 96.667 300 9 1 1 299 556873458 556873757 8.480000e-137 497.0
24 TraesCS2D01G070300 chr7D 96.333 300 10 1 1 299 556878192 556878491 3.950000e-135 492.0
25 TraesCS2D01G070300 chr7D 75.112 1117 221 43 2314 3403 629330031 629328945 1.850000e-128 470.0
26 TraesCS2D01G070300 chr7D 92.857 42 3 0 1736 1777 187342227 187342268 1.320000e-05 62.1
27 TraesCS2D01G070300 chr1D 86.854 426 56 0 1019 1444 100838977 100838552 1.110000e-130 477.0
28 TraesCS2D01G070300 chrUn 85.746 449 60 3 998 1444 406625119 406625565 5.140000e-129 472.0
29 TraesCS2D01G070300 chr7B 75.297 1093 213 40 2327 3395 732152625 732153684 1.850000e-128 470.0
30 TraesCS2D01G070300 chr7B 75.183 1092 213 40 2327 3395 732194504 732195560 3.090000e-126 462.0
31 TraesCS2D01G070300 chr7A 76.471 833 169 16 2574 3403 725231099 725230291 1.130000e-115 427.0
32 TraesCS2D01G070300 chr3B 90.820 305 28 0 1 305 707120074 707119770 4.090000e-110 409.0
33 TraesCS2D01G070300 chr6D 100.000 28 0 0 1751 1778 108160007 108160034 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G070300 chr2D 29530047 29534438 4391 True 8111.000000 8111 100.0000 1 4392 1 chr2D.!!$R1 4391
1 TraesCS2D01G070300 chr2B 47640895 47644973 4078 True 5147.000000 5147 89.5840 300 4392 1 chr2B.!!$R2 4092
2 TraesCS2D01G070300 chr2B 47540704 47544427 3723 True 4523.000000 4523 88.6230 592 4388 1 chr2B.!!$R1 3796
3 TraesCS2D01G070300 chr2B 47818072 47818876 804 False 501.000000 501 78.1400 2570 3392 1 chr2B.!!$F4 822
4 TraesCS2D01G070300 chr2B 47743871 47747224 3353 False 492.000000 501 82.1350 998 3392 2 chr2B.!!$F5 2394
5 TraesCS2D01G070300 chr2B 47776105 47776909 804 False 490.000000 490 77.8990 2570 3392 1 chr2B.!!$F3 822
6 TraesCS2D01G070300 chr2A 31833057 31839009 5952 True 1853.666667 3855 92.2430 300 4392 3 chr2A.!!$R1 4092
7 TraesCS2D01G070300 chr2A 31898689 31899493 804 False 523.000000 523 78.5450 2570 3392 1 chr2A.!!$F1 822
8 TraesCS2D01G070300 chr1A 104578971 104581450 2479 False 591.500000 715 82.2835 1001 3394 2 chr1A.!!$F1 2393
9 TraesCS2D01G070300 chr6B 689994140 689994687 547 False 665.000000 665 88.4550 2872 3434 1 chr6B.!!$F1 562
10 TraesCS2D01G070300 chr1B 150994738 150995813 1075 False 654.000000 654 77.8380 2299 3394 1 chr1B.!!$F1 1095
11 TraesCS2D01G070300 chr7D 629328945 629330031 1086 True 470.000000 470 75.1120 2314 3403 1 chr7D.!!$R1 1089
12 TraesCS2D01G070300 chr7B 732152625 732153684 1059 False 470.000000 470 75.2970 2327 3395 1 chr7B.!!$F1 1068
13 TraesCS2D01G070300 chr7B 732194504 732195560 1056 False 462.000000 462 75.1830 2327 3395 1 chr7B.!!$F2 1068
14 TraesCS2D01G070300 chr7A 725230291 725231099 808 True 427.000000 427 76.4710 2574 3403 1 chr7A.!!$R1 829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.029834 ATGATCCGATTTTGCTGCGC 59.970 50.0 0.00 0.0 0.00 6.09 F
166 167 0.035598 TTTTGCGGATCGGGAGAACA 59.964 50.0 2.13 0.0 45.37 3.18 F
974 2677 0.238289 CCATCAAACACACACGCTCC 59.762 55.0 0.00 0.0 0.00 4.70 F
2090 5375 0.107654 AATCAGCCCTTGACGTAGCC 60.108 55.0 0.00 0.0 38.99 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 3024 0.248907 CGACGCCGACATACTCCATT 60.249 55.0 0.00 0.00 38.22 3.16 R
1870 5155 0.460284 GTCTGCCACGTGTATCTGGG 60.460 60.0 15.65 0.00 0.00 4.45 R
2463 5865 0.322816 TCAAGATGGTGGCCAAGAGC 60.323 55.0 7.24 0.00 36.95 4.09 R
3828 7293 0.035056 CTCCCATGGAGCGTTTCCTT 60.035 55.0 15.22 1.16 46.92 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.070429 CTGAAAGTTGCAGCGTTTTCT 57.930 42.857 13.73 0.00 32.28 2.52
32 33 2.785477 CTGAAAGTTGCAGCGTTTTCTG 59.215 45.455 13.73 10.53 37.15 3.02
33 34 2.163412 TGAAAGTTGCAGCGTTTTCTGT 59.837 40.909 13.73 0.00 36.49 3.41
34 35 2.939460 AAGTTGCAGCGTTTTCTGTT 57.061 40.000 0.00 0.00 36.49 3.16
35 36 4.142578 TGAAAGTTGCAGCGTTTTCTGTTA 60.143 37.500 13.73 0.00 36.49 2.41
36 37 4.568152 AAGTTGCAGCGTTTTCTGTTAT 57.432 36.364 0.00 0.00 36.49 1.89
37 38 4.568152 AGTTGCAGCGTTTTCTGTTATT 57.432 36.364 0.00 0.00 36.49 1.40
38 39 4.290155 AGTTGCAGCGTTTTCTGTTATTG 58.710 39.130 0.00 0.00 36.49 1.90
39 40 2.660490 TGCAGCGTTTTCTGTTATTGC 58.340 42.857 0.00 0.00 36.49 3.56
40 41 2.293122 TGCAGCGTTTTCTGTTATTGCT 59.707 40.909 0.00 0.00 36.49 3.91
41 42 2.911102 GCAGCGTTTTCTGTTATTGCTC 59.089 45.455 0.00 0.00 36.49 4.26
42 43 3.365364 GCAGCGTTTTCTGTTATTGCTCT 60.365 43.478 0.00 0.00 36.49 4.09
43 44 4.398247 CAGCGTTTTCTGTTATTGCTCTC 58.602 43.478 0.00 0.00 0.00 3.20
44 45 4.153117 CAGCGTTTTCTGTTATTGCTCTCT 59.847 41.667 0.00 0.00 0.00 3.10
45 46 4.153117 AGCGTTTTCTGTTATTGCTCTCTG 59.847 41.667 0.00 0.00 0.00 3.35
46 47 4.398247 CGTTTTCTGTTATTGCTCTCTGC 58.602 43.478 0.00 0.00 43.25 4.26
47 48 4.153117 CGTTTTCTGTTATTGCTCTCTGCT 59.847 41.667 0.00 0.00 43.37 4.24
48 49 5.348724 CGTTTTCTGTTATTGCTCTCTGCTA 59.651 40.000 0.00 0.00 43.37 3.49
49 50 6.036517 CGTTTTCTGTTATTGCTCTCTGCTAT 59.963 38.462 0.00 0.00 43.37 2.97
50 51 7.222805 CGTTTTCTGTTATTGCTCTCTGCTATA 59.777 37.037 0.00 0.00 43.37 1.31
51 52 9.050601 GTTTTCTGTTATTGCTCTCTGCTATAT 57.949 33.333 0.00 0.00 43.37 0.86
52 53 8.824159 TTTCTGTTATTGCTCTCTGCTATATC 57.176 34.615 0.00 0.00 43.37 1.63
53 54 7.773489 TCTGTTATTGCTCTCTGCTATATCT 57.227 36.000 0.00 0.00 43.37 1.98
54 55 7.825681 TCTGTTATTGCTCTCTGCTATATCTC 58.174 38.462 0.00 0.00 43.37 2.75
55 56 7.669304 TCTGTTATTGCTCTCTGCTATATCTCT 59.331 37.037 0.00 0.00 43.37 3.10
56 57 8.187913 TGTTATTGCTCTCTGCTATATCTCTT 57.812 34.615 0.00 0.00 43.37 2.85
57 58 8.087136 TGTTATTGCTCTCTGCTATATCTCTTG 58.913 37.037 0.00 0.00 43.37 3.02
58 59 6.669125 ATTGCTCTCTGCTATATCTCTTGT 57.331 37.500 0.00 0.00 43.37 3.16
59 60 6.477053 TTGCTCTCTGCTATATCTCTTGTT 57.523 37.500 0.00 0.00 43.37 2.83
60 61 7.588497 TTGCTCTCTGCTATATCTCTTGTTA 57.412 36.000 0.00 0.00 43.37 2.41
61 62 6.976088 TGCTCTCTGCTATATCTCTTGTTAC 58.024 40.000 0.00 0.00 43.37 2.50
62 63 6.547510 TGCTCTCTGCTATATCTCTTGTTACA 59.452 38.462 0.00 0.00 43.37 2.41
63 64 7.083858 GCTCTCTGCTATATCTCTTGTTACAG 58.916 42.308 0.00 0.00 38.95 2.74
64 65 6.976088 TCTCTGCTATATCTCTTGTTACAGC 58.024 40.000 0.00 0.00 0.00 4.40
65 66 6.547510 TCTCTGCTATATCTCTTGTTACAGCA 59.452 38.462 0.00 0.00 36.44 4.41
67 68 6.471233 TGCTATATCTCTTGTTACAGCAGT 57.529 37.500 0.00 0.00 33.15 4.40
68 69 6.878317 TGCTATATCTCTTGTTACAGCAGTT 58.122 36.000 0.00 0.00 33.15 3.16
69 70 6.758416 TGCTATATCTCTTGTTACAGCAGTTG 59.242 38.462 0.00 0.00 33.15 3.16
70 71 6.980978 GCTATATCTCTTGTTACAGCAGTTGA 59.019 38.462 0.00 0.00 0.00 3.18
71 72 7.043059 GCTATATCTCTTGTTACAGCAGTTGAC 60.043 40.741 0.00 0.00 0.00 3.18
72 73 4.672587 TCTCTTGTTACAGCAGTTGACT 57.327 40.909 0.00 0.00 0.00 3.41
73 74 5.784578 TCTCTTGTTACAGCAGTTGACTA 57.215 39.130 0.00 0.00 0.00 2.59
74 75 5.529791 TCTCTTGTTACAGCAGTTGACTAC 58.470 41.667 0.00 0.00 0.00 2.73
75 76 5.302059 TCTCTTGTTACAGCAGTTGACTACT 59.698 40.000 0.00 0.00 37.68 2.57
76 77 6.489022 TCTCTTGTTACAGCAGTTGACTACTA 59.511 38.462 0.00 0.00 34.56 1.82
77 78 6.678878 TCTTGTTACAGCAGTTGACTACTAG 58.321 40.000 0.00 0.00 34.56 2.57
78 79 4.806330 TGTTACAGCAGTTGACTACTAGC 58.194 43.478 0.00 0.00 34.56 3.42
79 80 4.523173 TGTTACAGCAGTTGACTACTAGCT 59.477 41.667 0.00 0.00 39.92 3.32
80 81 5.708697 TGTTACAGCAGTTGACTACTAGCTA 59.291 40.000 11.35 0.00 38.40 3.32
81 82 4.974368 ACAGCAGTTGACTACTAGCTAG 57.026 45.455 19.44 19.44 38.40 3.42
82 83 3.129638 ACAGCAGTTGACTACTAGCTAGC 59.870 47.826 20.91 6.62 38.40 3.42
83 84 3.380004 CAGCAGTTGACTACTAGCTAGCT 59.620 47.826 23.12 23.12 38.40 3.32
84 85 4.576873 CAGCAGTTGACTACTAGCTAGCTA 59.423 45.833 22.85 22.85 38.40 3.32
85 86 4.577283 AGCAGTTGACTACTAGCTAGCTAC 59.423 45.833 20.67 10.91 38.56 3.58
86 87 4.261280 GCAGTTGACTACTAGCTAGCTACC 60.261 50.000 20.67 8.52 34.56 3.18
87 88 5.127491 CAGTTGACTACTAGCTAGCTACCT 58.873 45.833 20.67 10.89 34.56 3.08
88 89 5.237779 CAGTTGACTACTAGCTAGCTACCTC 59.762 48.000 20.67 12.03 34.56 3.85
89 90 4.354893 TGACTACTAGCTAGCTACCTCC 57.645 50.000 20.67 9.36 0.00 4.30
90 91 3.072768 TGACTACTAGCTAGCTACCTCCC 59.927 52.174 20.67 10.33 0.00 4.30
91 92 2.038820 ACTACTAGCTAGCTACCTCCCG 59.961 54.545 20.67 12.07 0.00 5.14
92 93 1.138568 ACTAGCTAGCTACCTCCCGA 58.861 55.000 20.67 0.00 0.00 5.14
93 94 1.706305 ACTAGCTAGCTACCTCCCGAT 59.294 52.381 20.67 0.00 0.00 4.18
94 95 2.290450 ACTAGCTAGCTACCTCCCGATC 60.290 54.545 20.67 0.00 0.00 3.69
95 96 0.251430 AGCTAGCTACCTCCCGATCC 60.251 60.000 17.69 0.00 0.00 3.36
96 97 1.587933 GCTAGCTACCTCCCGATCCG 61.588 65.000 7.70 0.00 0.00 4.18
97 98 1.587933 CTAGCTACCTCCCGATCCGC 61.588 65.000 0.00 0.00 0.00 5.54
98 99 3.992317 GCTACCTCCCGATCCGCC 61.992 72.222 0.00 0.00 0.00 6.13
99 100 3.671411 CTACCTCCCGATCCGCCG 61.671 72.222 0.00 0.00 0.00 6.46
106 107 3.680786 CCGATCCGCCGGCTATGA 61.681 66.667 26.68 18.35 43.25 2.15
107 108 2.573869 CGATCCGCCGGCTATGAT 59.426 61.111 26.68 22.24 0.00 2.45
108 109 1.517257 CGATCCGCCGGCTATGATC 60.517 63.158 27.38 27.38 0.00 2.92
109 110 1.153549 GATCCGCCGGCTATGATCC 60.154 63.158 27.13 15.96 0.00 3.36
110 111 2.890847 GATCCGCCGGCTATGATCCG 62.891 65.000 27.13 11.72 46.05 4.18
119 120 3.549299 GGCTATGATCCGATTTTGCTG 57.451 47.619 0.00 0.00 0.00 4.41
120 121 2.351157 GGCTATGATCCGATTTTGCTGC 60.351 50.000 0.00 0.00 0.00 5.25
121 122 2.663879 GCTATGATCCGATTTTGCTGCG 60.664 50.000 0.00 0.00 0.00 5.18
122 123 0.029834 ATGATCCGATTTTGCTGCGC 59.970 50.000 0.00 0.00 0.00 6.09
123 124 1.298638 GATCCGATTTTGCTGCGCC 60.299 57.895 4.18 0.00 0.00 6.53
124 125 1.992233 GATCCGATTTTGCTGCGCCA 61.992 55.000 4.18 0.00 0.00 5.69
125 126 1.386525 ATCCGATTTTGCTGCGCCAT 61.387 50.000 4.18 0.00 0.00 4.40
126 127 1.587088 CCGATTTTGCTGCGCCATC 60.587 57.895 4.18 0.00 0.00 3.51
127 128 1.587088 CGATTTTGCTGCGCCATCC 60.587 57.895 4.18 0.00 0.00 3.51
128 129 1.227060 GATTTTGCTGCGCCATCCC 60.227 57.895 4.18 0.00 0.00 3.85
129 130 1.947597 GATTTTGCTGCGCCATCCCA 61.948 55.000 4.18 0.00 0.00 4.37
130 131 2.229690 ATTTTGCTGCGCCATCCCAC 62.230 55.000 4.18 0.00 0.00 4.61
131 132 4.657408 TTGCTGCGCCATCCCACA 62.657 61.111 4.18 0.00 0.00 4.17
138 139 4.101448 GCCATCCCACAGCCTCGT 62.101 66.667 0.00 0.00 0.00 4.18
139 140 2.187946 CCATCCCACAGCCTCGTC 59.812 66.667 0.00 0.00 0.00 4.20
140 141 2.362369 CCATCCCACAGCCTCGTCT 61.362 63.158 0.00 0.00 0.00 4.18
141 142 1.142748 CATCCCACAGCCTCGTCTC 59.857 63.158 0.00 0.00 0.00 3.36
142 143 1.305297 ATCCCACAGCCTCGTCTCA 60.305 57.895 0.00 0.00 0.00 3.27
143 144 1.608717 ATCCCACAGCCTCGTCTCAC 61.609 60.000 0.00 0.00 0.00 3.51
144 145 2.574018 CCCACAGCCTCGTCTCACA 61.574 63.158 0.00 0.00 0.00 3.58
145 146 1.080230 CCACAGCCTCGTCTCACAG 60.080 63.158 0.00 0.00 0.00 3.66
146 147 1.735920 CACAGCCTCGTCTCACAGC 60.736 63.158 0.00 0.00 0.00 4.40
147 148 1.905843 ACAGCCTCGTCTCACAGCT 60.906 57.895 0.00 0.00 0.00 4.24
148 149 1.291588 CAGCCTCGTCTCACAGCTT 59.708 57.895 0.00 0.00 0.00 3.74
149 150 0.320247 CAGCCTCGTCTCACAGCTTT 60.320 55.000 0.00 0.00 0.00 3.51
150 151 0.394565 AGCCTCGTCTCACAGCTTTT 59.605 50.000 0.00 0.00 0.00 2.27
151 152 0.514691 GCCTCGTCTCACAGCTTTTG 59.485 55.000 0.00 0.00 0.00 2.44
162 163 3.102097 GCTTTTGCGGATCGGGAG 58.898 61.111 2.13 0.00 34.86 4.30
163 164 1.449601 GCTTTTGCGGATCGGGAGA 60.450 57.895 2.13 0.00 38.65 3.71
164 165 1.024579 GCTTTTGCGGATCGGGAGAA 61.025 55.000 2.13 0.19 37.98 2.87
165 166 0.727398 CTTTTGCGGATCGGGAGAAC 59.273 55.000 2.13 0.00 45.37 3.01
166 167 0.035598 TTTTGCGGATCGGGAGAACA 59.964 50.000 2.13 0.00 45.37 3.18
167 168 0.391130 TTTGCGGATCGGGAGAACAG 60.391 55.000 2.13 0.00 45.37 3.16
168 169 2.107141 GCGGATCGGGAGAACAGG 59.893 66.667 2.13 0.00 45.37 4.00
169 170 2.722201 GCGGATCGGGAGAACAGGT 61.722 63.158 2.13 0.00 45.37 4.00
170 171 1.389609 GCGGATCGGGAGAACAGGTA 61.390 60.000 2.13 0.00 45.37 3.08
171 172 1.108776 CGGATCGGGAGAACAGGTAA 58.891 55.000 0.00 0.00 45.37 2.85
172 173 1.479323 CGGATCGGGAGAACAGGTAAA 59.521 52.381 0.00 0.00 45.37 2.01
173 174 2.093869 CGGATCGGGAGAACAGGTAAAA 60.094 50.000 0.00 0.00 45.37 1.52
174 175 3.268330 GGATCGGGAGAACAGGTAAAAC 58.732 50.000 0.00 0.00 45.37 2.43
175 176 2.443887 TCGGGAGAACAGGTAAAACG 57.556 50.000 0.00 0.00 34.75 3.60
176 177 0.794473 CGGGAGAACAGGTAAAACGC 59.206 55.000 0.00 0.00 0.00 4.84
177 178 0.794473 GGGAGAACAGGTAAAACGCG 59.206 55.000 3.53 3.53 0.00 6.01
178 179 0.794473 GGAGAACAGGTAAAACGCGG 59.206 55.000 12.47 0.00 0.00 6.46
179 180 0.794473 GAGAACAGGTAAAACGCGGG 59.206 55.000 12.47 0.00 0.00 6.13
180 181 0.393820 AGAACAGGTAAAACGCGGGA 59.606 50.000 12.47 0.00 0.00 5.14
181 182 1.002773 AGAACAGGTAAAACGCGGGAT 59.997 47.619 12.47 0.00 0.00 3.85
182 183 1.395954 GAACAGGTAAAACGCGGGATC 59.604 52.381 12.47 0.00 0.00 3.36
183 184 0.738412 ACAGGTAAAACGCGGGATCG 60.738 55.000 12.47 0.00 39.81 3.69
184 185 0.738412 CAGGTAAAACGCGGGATCGT 60.738 55.000 12.47 0.00 45.58 3.73
191 192 4.794439 CGCGGGATCGTGTGCAGA 62.794 66.667 0.00 0.00 41.47 4.26
192 193 2.887568 GCGGGATCGTGTGCAGAG 60.888 66.667 0.00 0.00 38.89 3.35
193 194 2.573869 CGGGATCGTGTGCAGAGT 59.426 61.111 0.00 0.00 0.00 3.24
194 195 1.807165 CGGGATCGTGTGCAGAGTG 60.807 63.158 0.00 0.00 0.00 3.51
195 196 2.103042 GGGATCGTGTGCAGAGTGC 61.103 63.158 0.00 0.00 45.29 4.40
204 205 3.418068 GCAGAGTGCAGCACGTCC 61.418 66.667 19.96 12.86 44.26 4.79
205 206 3.108289 CAGAGTGCAGCACGTCCG 61.108 66.667 19.96 6.83 39.64 4.79
206 207 3.606662 AGAGTGCAGCACGTCCGT 61.607 61.111 19.96 1.42 39.64 4.69
207 208 3.106407 GAGTGCAGCACGTCCGTC 61.106 66.667 19.96 7.90 39.64 4.79
208 209 4.664677 AGTGCAGCACGTCCGTCC 62.665 66.667 19.96 0.00 39.64 4.79
209 210 4.664677 GTGCAGCACGTCCGTCCT 62.665 66.667 10.47 0.00 0.00 3.85
210 211 2.986979 TGCAGCACGTCCGTCCTA 60.987 61.111 0.00 0.00 0.00 2.94
211 212 2.202623 GCAGCACGTCCGTCCTAG 60.203 66.667 0.00 0.00 0.00 3.02
212 213 2.202623 CAGCACGTCCGTCCTAGC 60.203 66.667 0.00 0.00 0.00 3.42
213 214 2.361357 AGCACGTCCGTCCTAGCT 60.361 61.111 0.00 0.00 0.00 3.32
214 215 1.077930 AGCACGTCCGTCCTAGCTA 60.078 57.895 1.17 0.00 0.00 3.32
215 216 1.063811 GCACGTCCGTCCTAGCTAC 59.936 63.158 0.00 0.00 0.00 3.58
216 217 1.375098 GCACGTCCGTCCTAGCTACT 61.375 60.000 0.00 0.00 0.00 2.57
217 218 1.093159 CACGTCCGTCCTAGCTACTT 58.907 55.000 0.00 0.00 0.00 2.24
218 219 1.093159 ACGTCCGTCCTAGCTACTTG 58.907 55.000 0.00 0.00 0.00 3.16
219 220 0.248539 CGTCCGTCCTAGCTACTTGC 60.249 60.000 0.00 0.00 43.29 4.01
220 221 0.815734 GTCCGTCCTAGCTACTTGCA 59.184 55.000 0.00 0.00 45.94 4.08
221 222 0.815734 TCCGTCCTAGCTACTTGCAC 59.184 55.000 0.00 0.00 45.94 4.57
222 223 0.525668 CCGTCCTAGCTACTTGCACG 60.526 60.000 0.00 0.00 45.94 5.34
223 224 1.140407 CGTCCTAGCTACTTGCACGC 61.140 60.000 0.00 0.00 45.94 5.34
224 225 1.138883 TCCTAGCTACTTGCACGCG 59.861 57.895 3.53 3.53 45.94 6.01
225 226 2.517450 CCTAGCTACTTGCACGCGC 61.517 63.158 5.73 0.00 45.94 6.86
226 227 2.508439 TAGCTACTTGCACGCGCC 60.508 61.111 5.73 0.00 45.94 6.53
227 228 3.289704 TAGCTACTTGCACGCGCCA 62.290 57.895 5.73 0.00 45.94 5.69
228 229 4.445545 GCTACTTGCACGCGCCAC 62.446 66.667 5.73 0.00 42.31 5.01
229 230 3.041351 CTACTTGCACGCGCCACA 61.041 61.111 5.73 0.00 37.32 4.17
230 231 2.358125 TACTTGCACGCGCCACAT 60.358 55.556 5.73 0.00 37.32 3.21
231 232 2.567470 CTACTTGCACGCGCCACATG 62.567 60.000 5.73 6.99 37.32 3.21
249 250 2.791383 TGCGGCCATGCATTATTAAC 57.209 45.000 2.24 0.00 40.62 2.01
250 251 2.027385 TGCGGCCATGCATTATTAACA 58.973 42.857 2.24 0.00 40.62 2.41
251 252 2.034432 TGCGGCCATGCATTATTAACAG 59.966 45.455 2.24 0.00 40.62 3.16
252 253 2.293122 GCGGCCATGCATTATTAACAGA 59.707 45.455 2.24 0.00 34.15 3.41
253 254 3.243367 GCGGCCATGCATTATTAACAGAA 60.243 43.478 2.24 0.00 34.15 3.02
254 255 4.736168 GCGGCCATGCATTATTAACAGAAA 60.736 41.667 2.24 0.00 34.15 2.52
255 256 5.347342 CGGCCATGCATTATTAACAGAAAA 58.653 37.500 2.24 0.00 0.00 2.29
256 257 5.231991 CGGCCATGCATTATTAACAGAAAAC 59.768 40.000 2.24 0.00 0.00 2.43
257 258 6.340522 GGCCATGCATTATTAACAGAAAACT 58.659 36.000 0.00 0.00 0.00 2.66
258 259 7.488322 GGCCATGCATTATTAACAGAAAACTA 58.512 34.615 0.00 0.00 0.00 2.24
259 260 7.978975 GGCCATGCATTATTAACAGAAAACTAA 59.021 33.333 0.00 0.00 0.00 2.24
260 261 9.364989 GCCATGCATTATTAACAGAAAACTAAA 57.635 29.630 0.00 0.00 0.00 1.85
273 274 8.918202 ACAGAAAACTAAACTAACCATCATGA 57.082 30.769 0.00 0.00 0.00 3.07
274 275 8.784043 ACAGAAAACTAAACTAACCATCATGAC 58.216 33.333 0.00 0.00 0.00 3.06
275 276 8.783093 CAGAAAACTAAACTAACCATCATGACA 58.217 33.333 0.00 0.00 0.00 3.58
276 277 9.349713 AGAAAACTAAACTAACCATCATGACAA 57.650 29.630 0.00 0.00 0.00 3.18
277 278 9.394477 GAAAACTAAACTAACCATCATGACAAC 57.606 33.333 0.00 0.00 0.00 3.32
278 279 8.458573 AAACTAAACTAACCATCATGACAACA 57.541 30.769 0.00 0.00 0.00 3.33
279 280 7.672983 ACTAAACTAACCATCATGACAACAG 57.327 36.000 0.00 0.00 0.00 3.16
280 281 7.450074 ACTAAACTAACCATCATGACAACAGA 58.550 34.615 0.00 0.00 0.00 3.41
281 282 6.808008 AAACTAACCATCATGACAACAGAG 57.192 37.500 0.00 0.00 0.00 3.35
282 283 5.745312 ACTAACCATCATGACAACAGAGA 57.255 39.130 0.00 0.00 0.00 3.10
283 284 6.305272 ACTAACCATCATGACAACAGAGAT 57.695 37.500 0.00 0.00 0.00 2.75
284 285 6.715280 ACTAACCATCATGACAACAGAGATT 58.285 36.000 0.00 0.00 0.00 2.40
285 286 7.851228 ACTAACCATCATGACAACAGAGATTA 58.149 34.615 0.00 0.00 0.00 1.75
286 287 6.992063 AACCATCATGACAACAGAGATTAC 57.008 37.500 0.00 0.00 0.00 1.89
287 288 6.053632 ACCATCATGACAACAGAGATTACA 57.946 37.500 0.00 0.00 0.00 2.41
288 289 6.111382 ACCATCATGACAACAGAGATTACAG 58.889 40.000 0.00 0.00 0.00 2.74
289 290 5.526479 CCATCATGACAACAGAGATTACAGG 59.474 44.000 0.00 0.00 0.00 4.00
290 291 6.343703 CATCATGACAACAGAGATTACAGGA 58.656 40.000 0.00 0.00 0.00 3.86
291 292 6.358974 TCATGACAACAGAGATTACAGGAA 57.641 37.500 0.00 0.00 0.00 3.36
292 293 6.401394 TCATGACAACAGAGATTACAGGAAG 58.599 40.000 0.00 0.00 0.00 3.46
293 294 4.569943 TGACAACAGAGATTACAGGAAGC 58.430 43.478 0.00 0.00 0.00 3.86
294 295 4.284490 TGACAACAGAGATTACAGGAAGCT 59.716 41.667 0.00 0.00 36.16 3.74
295 296 5.480422 TGACAACAGAGATTACAGGAAGCTA 59.520 40.000 0.00 0.00 32.64 3.32
296 297 6.014584 TGACAACAGAGATTACAGGAAGCTAA 60.015 38.462 0.00 0.00 32.64 3.09
297 298 6.166982 ACAACAGAGATTACAGGAAGCTAAC 58.833 40.000 0.00 0.00 32.64 2.34
298 299 6.166279 CAACAGAGATTACAGGAAGCTAACA 58.834 40.000 0.00 0.00 32.64 2.41
303 304 6.155221 AGAGATTACAGGAAGCTAACACATCA 59.845 38.462 0.00 0.00 32.64 3.07
560 2227 4.768968 TGATTGAGTCACTCTCTCATGTGA 59.231 41.667 6.33 0.00 43.13 3.58
566 2233 7.845037 TGAGTCACTCTCTCATGTGAAATAAT 58.155 34.615 6.33 0.00 43.59 1.28
570 2237 9.039870 GTCACTCTCTCATGTGAAATAATTAGG 57.960 37.037 0.00 0.00 43.59 2.69
643 2310 4.310769 GCACTCACTGCCTATCGATAATT 58.689 43.478 6.58 0.00 40.42 1.40
672 2339 4.571984 AGTGTGCTACATATCGTACACGTA 59.428 41.667 1.19 0.00 46.69 3.57
675 2342 7.118825 AGTGTGCTACATATCGTACACGTATAT 59.881 37.037 1.19 2.19 46.69 0.86
677 2344 9.101655 TGTGCTACATATCGTACACGTATATAT 57.898 33.333 1.19 0.00 40.80 0.86
763 2439 1.069204 TCAGCGACAAGGCCTATCATC 59.931 52.381 5.16 0.00 0.00 2.92
960 2663 1.210234 CACCATCTAGCCACACCATCA 59.790 52.381 0.00 0.00 0.00 3.07
971 2674 0.380378 ACACCATCAAACACACACGC 59.620 50.000 0.00 0.00 0.00 5.34
974 2677 0.238289 CCATCAAACACACACGCTCC 59.762 55.000 0.00 0.00 0.00 4.70
989 2692 2.354199 ACGCTCCTACTCGTAAACTAGC 59.646 50.000 0.00 0.00 37.14 3.42
992 2695 3.377798 GCTCCTACTCGTAAACTAGCAGT 59.622 47.826 0.00 0.00 0.00 4.40
993 2696 4.731193 GCTCCTACTCGTAAACTAGCAGTG 60.731 50.000 0.00 0.00 0.00 3.66
1024 2737 0.620556 GAAGAAGAGGGTGGCCATCA 59.379 55.000 20.00 0.00 36.71 3.07
1281 2994 2.507102 CACTTCGGCGTGCTCGAT 60.507 61.111 13.13 0.00 39.71 3.59
1296 3009 0.250124 TCGATTGCGTCAGGTTTGGT 60.250 50.000 0.00 0.00 38.98 3.67
1500 3544 9.970553 TTTCTAGATGAAGTACTACCTAGTTGA 57.029 33.333 0.00 0.00 35.56 3.18
1502 3546 9.781633 TCTAGATGAAGTACTACCTAGTTGATC 57.218 37.037 0.00 0.00 37.73 2.92
1503 3547 7.826918 AGATGAAGTACTACCTAGTTGATCC 57.173 40.000 0.00 0.00 37.73 3.36
1504 3548 7.355101 AGATGAAGTACTACCTAGTTGATCCA 58.645 38.462 0.00 0.00 37.73 3.41
1505 3549 8.007742 AGATGAAGTACTACCTAGTTGATCCAT 58.992 37.037 0.00 0.00 37.73 3.41
1506 3550 7.584122 TGAAGTACTACCTAGTTGATCCATC 57.416 40.000 0.00 0.00 37.73 3.51
1546 4303 3.293262 CGTGTTTGTATGGTTTTCACGG 58.707 45.455 0.00 0.00 41.79 4.94
1616 4423 8.642908 AAATATTTAGCTTTCGGCCAAAATAC 57.357 30.769 2.24 0.00 39.67 1.89
1640 4447 8.792830 ACATAAGCAATTTCAGTAGTACACAT 57.207 30.769 2.52 0.00 0.00 3.21
1710 4995 5.825593 AATCCTACTGTTTCAGTCCTTCA 57.174 39.130 5.66 0.00 41.21 3.02
1719 5004 5.659463 TGTTTCAGTCCTTCAACCAAAATG 58.341 37.500 0.00 0.00 0.00 2.32
1721 5006 2.293122 TCAGTCCTTCAACCAAAATGCG 59.707 45.455 0.00 0.00 0.00 4.73
1723 5008 2.955660 AGTCCTTCAACCAAAATGCGAA 59.044 40.909 0.00 0.00 0.00 4.70
1724 5009 3.049912 GTCCTTCAACCAAAATGCGAAC 58.950 45.455 0.00 0.00 0.00 3.95
1725 5010 2.035321 TCCTTCAACCAAAATGCGAACC 59.965 45.455 0.00 0.00 0.00 3.62
1726 5011 2.050691 CTTCAACCAAAATGCGAACCG 58.949 47.619 0.00 0.00 0.00 4.44
1731 5016 3.963383 ACCAAAATGCGAACCGATATC 57.037 42.857 0.00 0.00 0.00 1.63
1732 5017 3.275143 ACCAAAATGCGAACCGATATCA 58.725 40.909 3.12 0.00 0.00 2.15
1736 5021 2.890808 ATGCGAACCGATATCACTGT 57.109 45.000 3.12 0.00 0.00 3.55
1737 5022 2.665649 TGCGAACCGATATCACTGTT 57.334 45.000 3.12 2.95 0.00 3.16
1738 5023 2.267426 TGCGAACCGATATCACTGTTG 58.733 47.619 3.12 0.85 0.00 3.33
1739 5024 2.268298 GCGAACCGATATCACTGTTGT 58.732 47.619 3.12 0.00 0.00 3.32
1740 5025 2.671396 GCGAACCGATATCACTGTTGTT 59.329 45.455 3.12 0.00 0.00 2.83
1742 5027 3.483574 CGAACCGATATCACTGTTGTTGC 60.484 47.826 3.12 0.00 0.00 4.17
1743 5028 3.334583 ACCGATATCACTGTTGTTGCT 57.665 42.857 3.12 0.00 0.00 3.91
1744 5029 4.465632 ACCGATATCACTGTTGTTGCTA 57.534 40.909 3.12 0.00 0.00 3.49
1748 5033 6.128282 ACCGATATCACTGTTGTTGCTAAAAG 60.128 38.462 3.12 0.00 0.00 2.27
1755 5040 7.195646 TCACTGTTGTTGCTAAAAGATTTCTG 58.804 34.615 0.00 0.00 0.00 3.02
1785 5070 3.518634 GTGAAAACCACTTTGCTTCCA 57.481 42.857 0.00 0.00 42.44 3.53
1786 5071 4.058721 GTGAAAACCACTTTGCTTCCAT 57.941 40.909 0.00 0.00 42.44 3.41
1787 5072 4.051237 GTGAAAACCACTTTGCTTCCATC 58.949 43.478 0.00 0.00 42.44 3.51
1788 5073 3.703556 TGAAAACCACTTTGCTTCCATCA 59.296 39.130 0.00 0.00 0.00 3.07
1795 5080 4.692155 CCACTTTGCTTCCATCAATTTTCC 59.308 41.667 0.00 0.00 0.00 3.13
1806 5091 3.825908 TCAATTTTCCAACCCCTAGCT 57.174 42.857 0.00 0.00 0.00 3.32
1834 5119 5.047566 TGTCCCTTTTCAATCAGTGAAGA 57.952 39.130 0.00 0.00 46.85 2.87
1841 5126 8.910944 CCCTTTTCAATCAGTGAAGATAATGAT 58.089 33.333 0.00 0.00 46.85 2.45
1919 5204 4.398358 GTCCTTTGTATTGGGAGGTTTAGC 59.602 45.833 0.00 0.00 0.00 3.09
1966 5251 0.401738 CCAGGCAAAGGTCCAGAAGA 59.598 55.000 0.00 0.00 0.00 2.87
2048 5333 0.811281 AGATGTTAAAGGGCAAGCGC 59.189 50.000 0.00 0.00 37.44 5.92
2081 5366 2.728007 GGCTACTTGAAATCAGCCCTT 58.272 47.619 0.00 0.00 46.47 3.95
2090 5375 0.107654 AATCAGCCCTTGACGTAGCC 60.108 55.000 0.00 0.00 38.99 3.93
2105 5390 0.178767 TAGCCGCTGAATGTGCAGAT 59.821 50.000 2.16 0.00 38.14 2.90
2146 5523 7.618137 TCCTACGGCTATAATTTATTTCTCCC 58.382 38.462 0.00 0.00 0.00 4.30
2165 5544 3.702548 TCCCTTGCGCAGAAGTAACTATA 59.297 43.478 11.31 0.00 0.00 1.31
2166 5545 4.160814 TCCCTTGCGCAGAAGTAACTATAA 59.839 41.667 11.31 0.00 0.00 0.98
2167 5546 4.508124 CCCTTGCGCAGAAGTAACTATAAG 59.492 45.833 11.31 0.00 0.00 1.73
2168 5547 5.109903 CCTTGCGCAGAAGTAACTATAAGT 58.890 41.667 11.31 0.00 0.00 2.24
2175 5555 6.194876 CGCAGAAGTAACTATAAGTTCTCACG 59.805 42.308 0.00 0.00 39.51 4.35
2185 5565 9.878599 AACTATAAGTTCTCACGATTTTTGTTG 57.121 29.630 0.00 0.00 31.77 3.33
2187 5567 5.576447 AAGTTCTCACGATTTTTGTTGGT 57.424 34.783 0.00 0.00 0.00 3.67
2205 5585 3.626930 TGGTATGACAAACAATAGGGCC 58.373 45.455 0.00 0.00 0.00 5.80
2214 5594 3.861276 AACAATAGGGCCGTTTTTAGC 57.139 42.857 1.81 0.00 0.00 3.09
2215 5595 2.797786 ACAATAGGGCCGTTTTTAGCA 58.202 42.857 1.81 0.00 0.00 3.49
2233 5613 9.684448 TTTTTAGCAATTCGATGAAATTGTGTA 57.316 25.926 8.83 0.60 44.72 2.90
2279 5659 7.572523 TGCCTGAATTCTAACATTTATCCTG 57.427 36.000 7.05 0.00 0.00 3.86
2518 5930 4.916831 TGAAAGTCAGCATGTTATTTTGCG 59.083 37.500 0.00 0.00 43.61 4.85
3459 6893 5.704354 AGCAATCCATGTGGGTTATATCAA 58.296 37.500 0.00 0.00 36.09 2.57
3677 7121 0.378257 CGCGCATGGTTAAATCAGCT 59.622 50.000 8.75 0.00 0.00 4.24
3697 7141 3.257933 GCCTTCCGCAAGTGACTG 58.742 61.111 0.00 0.00 37.47 3.51
3698 7142 2.328099 GCCTTCCGCAAGTGACTGG 61.328 63.158 0.00 0.00 37.47 4.00
3746 7204 4.039603 ACAAGCTTTAGGCAGGAATTCT 57.960 40.909 5.23 0.00 44.79 2.40
3755 7213 7.717436 GCTTTAGGCAGGAATTCTACTATTCTT 59.283 37.037 5.23 0.00 41.35 2.52
3828 7293 3.594453 CCAAGAGGCAGGGCAAATA 57.406 52.632 0.00 0.00 0.00 1.40
3900 7371 1.548986 GCATAAAGGATGTGCAACGC 58.451 50.000 0.00 0.00 44.81 4.84
3906 7377 2.268076 GGATGTGCAACGCCAACCT 61.268 57.895 0.00 0.00 42.39 3.50
3924 7395 4.150897 ACCTTTTCTAGTGTTGCACAGA 57.849 40.909 2.01 0.81 36.74 3.41
3925 7396 4.718961 ACCTTTTCTAGTGTTGCACAGAT 58.281 39.130 2.01 0.00 36.74 2.90
4148 7619 1.484653 GGGGCAAACACAAAGAAACCT 59.515 47.619 0.00 0.00 0.00 3.50
4166 7637 3.898482 ACCTAAATCATAACAGGGGTGC 58.102 45.455 0.00 0.00 32.12 5.01
4187 7658 6.238759 GGTGCCATACTTCATTACAAGAATCC 60.239 42.308 0.00 0.00 0.00 3.01
4227 7698 2.222027 AGGCAGCACAAACTACAAGTC 58.778 47.619 0.00 0.00 0.00 3.01
4287 7758 5.819991 AGAGGATGGATTAGTTTCTTGCAA 58.180 37.500 0.00 0.00 0.00 4.08
4340 7811 6.791887 ACACAAGAGAATCACACATAACAG 57.208 37.500 0.00 0.00 37.82 3.16
4388 7860 4.898829 TCATTCAACAACAGGTGAACAG 57.101 40.909 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.814457 AACTTTCAGTGCGGCACAAA 59.186 45.000 32.29 22.92 36.74 2.83
6 7 1.370900 GCTGCAACTTTCAGTGCGG 60.371 57.895 0.00 0.07 34.21 5.69
8 9 0.248621 AACGCTGCAACTTTCAGTGC 60.249 50.000 0.00 0.00 43.69 4.40
9 10 2.193306 AAACGCTGCAACTTTCAGTG 57.807 45.000 0.00 1.00 44.95 3.66
10 11 2.423538 AGAAAACGCTGCAACTTTCAGT 59.576 40.909 15.87 0.00 34.21 3.41
11 12 2.785477 CAGAAAACGCTGCAACTTTCAG 59.215 45.455 15.87 7.88 31.56 3.02
12 13 2.163412 ACAGAAAACGCTGCAACTTTCA 59.837 40.909 15.87 0.00 39.51 2.69
13 14 2.797491 ACAGAAAACGCTGCAACTTTC 58.203 42.857 0.00 5.32 39.51 2.62
14 15 2.939460 ACAGAAAACGCTGCAACTTT 57.061 40.000 0.00 0.00 39.51 2.66
15 16 2.939460 AACAGAAAACGCTGCAACTT 57.061 40.000 0.00 0.00 39.51 2.66
16 17 4.290155 CAATAACAGAAAACGCTGCAACT 58.710 39.130 0.00 0.00 39.51 3.16
17 18 3.121362 GCAATAACAGAAAACGCTGCAAC 60.121 43.478 0.00 0.00 39.51 4.17
18 19 3.049206 GCAATAACAGAAAACGCTGCAA 58.951 40.909 0.00 0.00 39.51 4.08
19 20 2.293122 AGCAATAACAGAAAACGCTGCA 59.707 40.909 0.00 0.00 39.51 4.41
20 21 2.911102 GAGCAATAACAGAAAACGCTGC 59.089 45.455 0.00 0.00 39.51 5.25
21 22 4.153117 AGAGAGCAATAACAGAAAACGCTG 59.847 41.667 0.00 0.00 41.63 5.18
22 23 4.153117 CAGAGAGCAATAACAGAAAACGCT 59.847 41.667 0.00 0.00 0.00 5.07
23 24 4.398247 CAGAGAGCAATAACAGAAAACGC 58.602 43.478 0.00 0.00 0.00 4.84
24 25 4.398247 GCAGAGAGCAATAACAGAAAACG 58.602 43.478 0.00 0.00 44.79 3.60
38 39 6.976088 TGTAACAAGAGATATAGCAGAGAGC 58.024 40.000 0.00 0.00 46.19 4.09
39 40 7.083858 GCTGTAACAAGAGATATAGCAGAGAG 58.916 42.308 0.00 0.00 37.26 3.20
40 41 6.547510 TGCTGTAACAAGAGATATAGCAGAGA 59.452 38.462 0.00 0.00 40.50 3.10
41 42 6.743110 TGCTGTAACAAGAGATATAGCAGAG 58.257 40.000 0.00 0.00 40.50 3.35
42 43 6.715347 TGCTGTAACAAGAGATATAGCAGA 57.285 37.500 0.00 0.00 40.50 4.26
44 45 6.471233 ACTGCTGTAACAAGAGATATAGCA 57.529 37.500 0.00 0.00 42.16 3.49
45 46 6.980978 TCAACTGCTGTAACAAGAGATATAGC 59.019 38.462 0.00 0.00 37.62 2.97
46 47 8.194104 AGTCAACTGCTGTAACAAGAGATATAG 58.806 37.037 0.00 0.00 0.00 1.31
47 48 8.067751 AGTCAACTGCTGTAACAAGAGATATA 57.932 34.615 0.00 0.00 0.00 0.86
48 49 6.940739 AGTCAACTGCTGTAACAAGAGATAT 58.059 36.000 0.00 0.00 0.00 1.63
49 50 6.346477 AGTCAACTGCTGTAACAAGAGATA 57.654 37.500 0.00 0.00 0.00 1.98
50 51 5.220710 AGTCAACTGCTGTAACAAGAGAT 57.779 39.130 0.00 0.00 0.00 2.75
51 52 4.672587 AGTCAACTGCTGTAACAAGAGA 57.327 40.909 0.00 0.00 0.00 3.10
52 53 5.533482 AGTAGTCAACTGCTGTAACAAGAG 58.467 41.667 0.00 0.00 37.53 2.85
53 54 5.531122 AGTAGTCAACTGCTGTAACAAGA 57.469 39.130 0.00 0.00 37.53 3.02
54 55 5.346281 GCTAGTAGTCAACTGCTGTAACAAG 59.654 44.000 10.56 1.10 39.29 3.16
55 56 5.010719 AGCTAGTAGTCAACTGCTGTAACAA 59.989 40.000 10.56 0.00 39.53 2.83
56 57 4.523173 AGCTAGTAGTCAACTGCTGTAACA 59.477 41.667 10.56 0.00 39.53 2.41
57 58 5.061920 AGCTAGTAGTCAACTGCTGTAAC 57.938 43.478 10.56 0.00 39.53 2.50
58 59 5.163642 GCTAGCTAGTAGTCAACTGCTGTAA 60.164 44.000 21.62 0.00 40.49 2.41
59 60 4.335874 GCTAGCTAGTAGTCAACTGCTGTA 59.664 45.833 21.62 0.52 40.49 2.74
60 61 3.129638 GCTAGCTAGTAGTCAACTGCTGT 59.870 47.826 21.62 0.00 40.49 4.40
61 62 3.380004 AGCTAGCTAGTAGTCAACTGCTG 59.620 47.826 17.69 3.09 40.49 4.41
62 63 3.626930 AGCTAGCTAGTAGTCAACTGCT 58.373 45.455 17.69 6.79 41.95 4.24
63 64 4.261280 GGTAGCTAGCTAGTAGTCAACTGC 60.261 50.000 24.78 11.27 39.39 4.40
64 65 5.127491 AGGTAGCTAGCTAGTAGTCAACTG 58.873 45.833 24.78 0.00 39.39 3.16
65 66 5.370679 GAGGTAGCTAGCTAGTAGTCAACT 58.629 45.833 24.78 11.76 42.62 3.16
66 67 4.516321 GGAGGTAGCTAGCTAGTAGTCAAC 59.484 50.000 24.78 12.69 33.58 3.18
67 68 4.446023 GGGAGGTAGCTAGCTAGTAGTCAA 60.446 50.000 24.78 0.00 33.58 3.18
68 69 3.072768 GGGAGGTAGCTAGCTAGTAGTCA 59.927 52.174 24.78 0.13 33.58 3.41
69 70 3.678289 GGGAGGTAGCTAGCTAGTAGTC 58.322 54.545 24.78 16.83 33.58 2.59
70 71 2.038820 CGGGAGGTAGCTAGCTAGTAGT 59.961 54.545 24.78 9.51 33.58 2.73
71 72 2.302445 TCGGGAGGTAGCTAGCTAGTAG 59.698 54.545 24.78 15.84 33.58 2.57
72 73 2.333069 TCGGGAGGTAGCTAGCTAGTA 58.667 52.381 24.78 2.67 33.58 1.82
73 74 1.138568 TCGGGAGGTAGCTAGCTAGT 58.861 55.000 24.78 14.96 33.58 2.57
74 75 2.361789 GATCGGGAGGTAGCTAGCTAG 58.638 57.143 24.78 16.84 33.58 3.42
75 76 1.004511 GGATCGGGAGGTAGCTAGCTA 59.995 57.143 24.74 20.67 33.58 3.32
76 77 0.251430 GGATCGGGAGGTAGCTAGCT 60.251 60.000 24.94 24.94 36.62 3.32
77 78 1.587933 CGGATCGGGAGGTAGCTAGC 61.588 65.000 15.19 15.19 0.00 3.42
78 79 1.587933 GCGGATCGGGAGGTAGCTAG 61.588 65.000 0.00 0.00 0.00 3.42
79 80 1.602888 GCGGATCGGGAGGTAGCTA 60.603 63.158 0.00 0.00 0.00 3.32
80 81 2.913060 GCGGATCGGGAGGTAGCT 60.913 66.667 0.00 0.00 0.00 3.32
81 82 3.992317 GGCGGATCGGGAGGTAGC 61.992 72.222 2.13 0.00 0.00 3.58
82 83 3.671411 CGGCGGATCGGGAGGTAG 61.671 72.222 0.00 0.00 0.00 3.18
90 91 1.517257 GATCATAGCCGGCGGATCG 60.517 63.158 33.44 19.08 0.00 3.69
91 92 1.153549 GGATCATAGCCGGCGGATC 60.154 63.158 32.68 32.68 36.33 3.36
92 93 2.982130 GGATCATAGCCGGCGGAT 59.018 61.111 33.44 28.86 0.00 4.18
93 94 3.680786 CGGATCATAGCCGGCGGA 61.681 66.667 33.44 20.39 44.87 5.54
99 100 2.351157 GCAGCAAAATCGGATCATAGCC 60.351 50.000 0.00 0.00 0.00 3.93
100 101 2.663879 CGCAGCAAAATCGGATCATAGC 60.664 50.000 0.00 0.00 0.00 2.97
101 102 3.179010 CGCAGCAAAATCGGATCATAG 57.821 47.619 0.00 0.00 0.00 2.23
121 122 4.101448 ACGAGGCTGTGGGATGGC 62.101 66.667 0.00 0.00 0.00 4.40
122 123 2.187946 GACGAGGCTGTGGGATGG 59.812 66.667 0.00 0.00 0.00 3.51
123 124 1.142748 GAGACGAGGCTGTGGGATG 59.857 63.158 0.00 0.00 0.00 3.51
124 125 1.305297 TGAGACGAGGCTGTGGGAT 60.305 57.895 0.00 0.00 0.00 3.85
125 126 2.117423 TGAGACGAGGCTGTGGGA 59.883 61.111 0.00 0.00 0.00 4.37
126 127 2.262915 GTGAGACGAGGCTGTGGG 59.737 66.667 0.00 0.00 0.00 4.61
127 128 1.080230 CTGTGAGACGAGGCTGTGG 60.080 63.158 0.00 0.00 0.00 4.17
128 129 1.735920 GCTGTGAGACGAGGCTGTG 60.736 63.158 0.00 0.00 0.00 3.66
129 130 1.467678 AAGCTGTGAGACGAGGCTGT 61.468 55.000 0.00 0.00 33.30 4.40
130 131 0.320247 AAAGCTGTGAGACGAGGCTG 60.320 55.000 0.00 0.00 33.30 4.85
131 132 0.394565 AAAAGCTGTGAGACGAGGCT 59.605 50.000 0.00 0.00 34.52 4.58
132 133 0.514691 CAAAAGCTGTGAGACGAGGC 59.485 55.000 0.00 0.00 0.00 4.70
133 134 0.514691 GCAAAAGCTGTGAGACGAGG 59.485 55.000 1.87 0.00 0.00 4.63
134 135 0.162507 CGCAAAAGCTGTGAGACGAG 59.837 55.000 1.87 0.00 37.79 4.18
135 136 1.221466 CCGCAAAAGCTGTGAGACGA 61.221 55.000 1.87 0.00 37.79 4.20
136 137 1.205064 CCGCAAAAGCTGTGAGACG 59.795 57.895 1.87 0.00 37.79 4.18
137 138 1.129437 GATCCGCAAAAGCTGTGAGAC 59.871 52.381 1.87 0.00 37.79 3.36
138 139 1.442769 GATCCGCAAAAGCTGTGAGA 58.557 50.000 1.87 0.00 37.79 3.27
139 140 0.095935 CGATCCGCAAAAGCTGTGAG 59.904 55.000 1.87 0.00 37.79 3.51
140 141 1.298157 CCGATCCGCAAAAGCTGTGA 61.298 55.000 1.87 0.00 37.79 3.58
141 142 1.135315 CCGATCCGCAAAAGCTGTG 59.865 57.895 0.00 0.00 35.14 3.66
142 143 2.040544 CCCGATCCGCAAAAGCTGT 61.041 57.895 0.00 0.00 0.00 4.40
143 144 1.709147 CTCCCGATCCGCAAAAGCTG 61.709 60.000 0.00 0.00 0.00 4.24
144 145 1.450312 CTCCCGATCCGCAAAAGCT 60.450 57.895 0.00 0.00 0.00 3.74
145 146 1.024579 TTCTCCCGATCCGCAAAAGC 61.025 55.000 0.00 0.00 0.00 3.51
146 147 0.727398 GTTCTCCCGATCCGCAAAAG 59.273 55.000 0.00 0.00 0.00 2.27
147 148 0.035598 TGTTCTCCCGATCCGCAAAA 59.964 50.000 0.00 0.00 0.00 2.44
148 149 0.391130 CTGTTCTCCCGATCCGCAAA 60.391 55.000 0.00 0.00 0.00 3.68
149 150 1.218047 CTGTTCTCCCGATCCGCAA 59.782 57.895 0.00 0.00 0.00 4.85
150 151 2.721167 CCTGTTCTCCCGATCCGCA 61.721 63.158 0.00 0.00 0.00 5.69
151 152 1.389609 TACCTGTTCTCCCGATCCGC 61.390 60.000 0.00 0.00 0.00 5.54
152 153 1.108776 TTACCTGTTCTCCCGATCCG 58.891 55.000 0.00 0.00 0.00 4.18
153 154 3.268330 GTTTTACCTGTTCTCCCGATCC 58.732 50.000 0.00 0.00 0.00 3.36
154 155 2.928116 CGTTTTACCTGTTCTCCCGATC 59.072 50.000 0.00 0.00 0.00 3.69
155 156 2.933928 GCGTTTTACCTGTTCTCCCGAT 60.934 50.000 0.00 0.00 0.00 4.18
156 157 1.606224 GCGTTTTACCTGTTCTCCCGA 60.606 52.381 0.00 0.00 0.00 5.14
157 158 0.794473 GCGTTTTACCTGTTCTCCCG 59.206 55.000 0.00 0.00 0.00 5.14
158 159 0.794473 CGCGTTTTACCTGTTCTCCC 59.206 55.000 0.00 0.00 0.00 4.30
159 160 0.794473 CCGCGTTTTACCTGTTCTCC 59.206 55.000 4.92 0.00 0.00 3.71
160 161 0.794473 CCCGCGTTTTACCTGTTCTC 59.206 55.000 4.92 0.00 0.00 2.87
161 162 0.393820 TCCCGCGTTTTACCTGTTCT 59.606 50.000 4.92 0.00 0.00 3.01
162 163 1.395954 GATCCCGCGTTTTACCTGTTC 59.604 52.381 4.92 0.00 0.00 3.18
163 164 1.445871 GATCCCGCGTTTTACCTGTT 58.554 50.000 4.92 0.00 0.00 3.16
164 165 0.738412 CGATCCCGCGTTTTACCTGT 60.738 55.000 4.92 0.00 0.00 4.00
165 166 0.738412 ACGATCCCGCGTTTTACCTG 60.738 55.000 4.92 0.00 42.71 4.00
166 167 0.738412 CACGATCCCGCGTTTTACCT 60.738 55.000 4.92 0.00 43.59 3.08
167 168 1.015607 ACACGATCCCGCGTTTTACC 61.016 55.000 4.92 0.00 43.59 2.85
168 169 0.094046 CACACGATCCCGCGTTTTAC 59.906 55.000 4.92 0.00 43.59 2.01
169 170 1.628447 GCACACGATCCCGCGTTTTA 61.628 55.000 4.92 0.00 43.59 1.52
170 171 2.961669 GCACACGATCCCGCGTTTT 61.962 57.895 4.92 0.00 43.59 2.43
171 172 3.419759 GCACACGATCCCGCGTTT 61.420 61.111 4.92 0.00 43.59 3.60
172 173 4.673298 TGCACACGATCCCGCGTT 62.673 61.111 4.92 0.00 43.59 4.84
174 175 4.794439 TCTGCACACGATCCCGCG 62.794 66.667 0.00 0.00 39.95 6.46
175 176 2.887568 CTCTGCACACGATCCCGC 60.888 66.667 0.00 0.00 39.95 6.13
176 177 1.807165 CACTCTGCACACGATCCCG 60.807 63.158 0.00 0.00 42.50 5.14
177 178 2.103042 GCACTCTGCACACGATCCC 61.103 63.158 0.00 0.00 44.26 3.85
178 179 3.479370 GCACTCTGCACACGATCC 58.521 61.111 0.00 0.00 44.26 3.36
187 188 3.418068 GGACGTGCTGCACTCTGC 61.418 66.667 28.04 15.49 45.29 4.26
188 189 3.108289 CGGACGTGCTGCACTCTG 61.108 66.667 28.04 22.99 31.34 3.35
189 190 3.559657 GACGGACGTGCTGCACTCT 62.560 63.158 28.04 14.51 31.34 3.24
190 191 3.106407 GACGGACGTGCTGCACTC 61.106 66.667 28.04 22.36 31.34 3.51
191 192 4.664677 GGACGGACGTGCTGCACT 62.665 66.667 28.04 16.30 33.56 4.40
192 193 3.277211 TAGGACGGACGTGCTGCAC 62.277 63.158 25.51 22.38 46.10 4.57
193 194 2.986979 TAGGACGGACGTGCTGCA 60.987 61.111 25.51 6.92 46.10 4.41
194 195 2.202623 CTAGGACGGACGTGCTGC 60.203 66.667 25.51 1.14 46.10 5.25
195 196 1.374343 TAGCTAGGACGGACGTGCTG 61.374 60.000 25.51 16.87 46.10 4.41
197 198 1.063811 GTAGCTAGGACGGACGTGC 59.936 63.158 8.34 8.34 36.69 5.34
198 199 1.093159 AAGTAGCTAGGACGGACGTG 58.907 55.000 0.53 0.00 0.00 4.49
199 200 1.093159 CAAGTAGCTAGGACGGACGT 58.907 55.000 0.00 0.00 0.00 4.34
200 201 0.248539 GCAAGTAGCTAGGACGGACG 60.249 60.000 0.00 0.00 41.15 4.79
201 202 0.815734 TGCAAGTAGCTAGGACGGAC 59.184 55.000 0.00 0.00 45.94 4.79
202 203 0.815734 GTGCAAGTAGCTAGGACGGA 59.184 55.000 0.00 0.00 45.94 4.69
203 204 0.525668 CGTGCAAGTAGCTAGGACGG 60.526 60.000 14.95 0.95 45.94 4.79
204 205 1.140407 GCGTGCAAGTAGCTAGGACG 61.140 60.000 17.43 17.43 45.94 4.79
205 206 1.140407 CGCGTGCAAGTAGCTAGGAC 61.140 60.000 0.00 0.00 45.94 3.85
206 207 1.138883 CGCGTGCAAGTAGCTAGGA 59.861 57.895 0.00 0.00 45.94 2.94
207 208 2.517450 GCGCGTGCAAGTAGCTAGG 61.517 63.158 17.66 0.00 45.94 3.02
208 209 2.517450 GGCGCGTGCAAGTAGCTAG 61.517 63.158 24.18 0.00 45.94 3.42
209 210 2.508439 GGCGCGTGCAAGTAGCTA 60.508 61.111 24.18 0.00 45.94 3.32
210 211 4.680237 TGGCGCGTGCAAGTAGCT 62.680 61.111 24.18 0.00 45.94 3.32
211 212 4.445545 GTGGCGCGTGCAAGTAGC 62.446 66.667 24.18 12.09 45.35 3.58
212 213 2.390599 ATGTGGCGCGTGCAAGTAG 61.391 57.895 24.18 0.00 45.35 2.57
213 214 2.358125 ATGTGGCGCGTGCAAGTA 60.358 55.556 24.18 3.76 45.35 2.24
214 215 4.029186 CATGTGGCGCGTGCAAGT 62.029 61.111 24.18 0.00 45.35 3.16
231 232 2.293122 TCTGTTAATAATGCATGGCCGC 59.707 45.455 0.00 0.00 0.00 6.53
232 233 4.566545 TTCTGTTAATAATGCATGGCCG 57.433 40.909 0.00 0.00 0.00 6.13
233 234 6.340522 AGTTTTCTGTTAATAATGCATGGCC 58.659 36.000 0.00 0.00 0.00 5.36
234 235 8.925161 TTAGTTTTCTGTTAATAATGCATGGC 57.075 30.769 0.00 0.00 0.00 4.40
247 248 9.349713 TCATGATGGTTAGTTTAGTTTTCTGTT 57.650 29.630 0.00 0.00 0.00 3.16
248 249 8.784043 GTCATGATGGTTAGTTTAGTTTTCTGT 58.216 33.333 0.00 0.00 0.00 3.41
249 250 8.783093 TGTCATGATGGTTAGTTTAGTTTTCTG 58.217 33.333 0.00 0.00 0.00 3.02
250 251 8.918202 TGTCATGATGGTTAGTTTAGTTTTCT 57.082 30.769 0.00 0.00 0.00 2.52
251 252 9.394477 GTTGTCATGATGGTTAGTTTAGTTTTC 57.606 33.333 0.00 0.00 0.00 2.29
252 253 8.908903 TGTTGTCATGATGGTTAGTTTAGTTTT 58.091 29.630 0.00 0.00 0.00 2.43
253 254 8.458573 TGTTGTCATGATGGTTAGTTTAGTTT 57.541 30.769 0.00 0.00 0.00 2.66
254 255 7.936847 TCTGTTGTCATGATGGTTAGTTTAGTT 59.063 33.333 0.00 0.00 0.00 2.24
255 256 7.450074 TCTGTTGTCATGATGGTTAGTTTAGT 58.550 34.615 0.00 0.00 0.00 2.24
256 257 7.819415 TCTCTGTTGTCATGATGGTTAGTTTAG 59.181 37.037 0.00 0.00 0.00 1.85
257 258 7.676004 TCTCTGTTGTCATGATGGTTAGTTTA 58.324 34.615 0.00 0.00 0.00 2.01
258 259 6.533730 TCTCTGTTGTCATGATGGTTAGTTT 58.466 36.000 0.00 0.00 0.00 2.66
259 260 6.114187 TCTCTGTTGTCATGATGGTTAGTT 57.886 37.500 0.00 0.00 0.00 2.24
260 261 5.745312 TCTCTGTTGTCATGATGGTTAGT 57.255 39.130 0.00 0.00 0.00 2.24
261 262 7.765819 TGTAATCTCTGTTGTCATGATGGTTAG 59.234 37.037 0.00 0.00 0.00 2.34
262 263 7.619965 TGTAATCTCTGTTGTCATGATGGTTA 58.380 34.615 0.00 0.00 0.00 2.85
263 264 6.475504 TGTAATCTCTGTTGTCATGATGGTT 58.524 36.000 0.00 0.00 0.00 3.67
264 265 6.053632 TGTAATCTCTGTTGTCATGATGGT 57.946 37.500 0.00 0.00 0.00 3.55
265 266 5.526479 CCTGTAATCTCTGTTGTCATGATGG 59.474 44.000 0.00 0.00 0.00 3.51
266 267 6.343703 TCCTGTAATCTCTGTTGTCATGATG 58.656 40.000 0.00 0.00 0.00 3.07
267 268 6.550938 TCCTGTAATCTCTGTTGTCATGAT 57.449 37.500 0.00 0.00 0.00 2.45
268 269 6.358974 TTCCTGTAATCTCTGTTGTCATGA 57.641 37.500 0.00 0.00 0.00 3.07
269 270 5.064452 GCTTCCTGTAATCTCTGTTGTCATG 59.936 44.000 0.00 0.00 0.00 3.07
270 271 5.046014 AGCTTCCTGTAATCTCTGTTGTCAT 60.046 40.000 0.00 0.00 0.00 3.06
271 272 4.284490 AGCTTCCTGTAATCTCTGTTGTCA 59.716 41.667 0.00 0.00 0.00 3.58
272 273 4.826556 AGCTTCCTGTAATCTCTGTTGTC 58.173 43.478 0.00 0.00 0.00 3.18
273 274 4.899352 AGCTTCCTGTAATCTCTGTTGT 57.101 40.909 0.00 0.00 0.00 3.32
274 275 6.091441 GTGTTAGCTTCCTGTAATCTCTGTTG 59.909 42.308 0.00 0.00 0.00 3.33
275 276 6.166982 GTGTTAGCTTCCTGTAATCTCTGTT 58.833 40.000 0.00 0.00 0.00 3.16
276 277 5.246203 TGTGTTAGCTTCCTGTAATCTCTGT 59.754 40.000 0.00 0.00 0.00 3.41
277 278 5.724328 TGTGTTAGCTTCCTGTAATCTCTG 58.276 41.667 0.00 0.00 0.00 3.35
278 279 6.155221 TGATGTGTTAGCTTCCTGTAATCTCT 59.845 38.462 0.00 0.00 0.00 3.10
279 280 6.256757 GTGATGTGTTAGCTTCCTGTAATCTC 59.743 42.308 0.00 0.00 0.00 2.75
280 281 6.070538 AGTGATGTGTTAGCTTCCTGTAATCT 60.071 38.462 0.00 0.00 0.00 2.40
281 282 6.109359 AGTGATGTGTTAGCTTCCTGTAATC 58.891 40.000 0.00 0.00 0.00 1.75
282 283 6.054860 AGTGATGTGTTAGCTTCCTGTAAT 57.945 37.500 0.00 0.00 0.00 1.89
283 284 5.011635 TGAGTGATGTGTTAGCTTCCTGTAA 59.988 40.000 0.00 0.00 0.00 2.41
284 285 4.526650 TGAGTGATGTGTTAGCTTCCTGTA 59.473 41.667 0.00 0.00 0.00 2.74
285 286 3.324846 TGAGTGATGTGTTAGCTTCCTGT 59.675 43.478 0.00 0.00 0.00 4.00
286 287 3.930336 TGAGTGATGTGTTAGCTTCCTG 58.070 45.455 0.00 0.00 0.00 3.86
287 288 4.623932 TTGAGTGATGTGTTAGCTTCCT 57.376 40.909 0.00 0.00 0.00 3.36
288 289 4.437930 GCATTGAGTGATGTGTTAGCTTCC 60.438 45.833 0.00 0.00 0.00 3.46
289 290 4.154737 TGCATTGAGTGATGTGTTAGCTTC 59.845 41.667 0.00 0.00 0.00 3.86
290 291 4.074259 TGCATTGAGTGATGTGTTAGCTT 58.926 39.130 0.00 0.00 0.00 3.74
291 292 3.678289 TGCATTGAGTGATGTGTTAGCT 58.322 40.909 0.00 0.00 0.00 3.32
292 293 3.686241 TCTGCATTGAGTGATGTGTTAGC 59.314 43.478 0.00 0.00 0.00 3.09
293 294 4.331992 CCTCTGCATTGAGTGATGTGTTAG 59.668 45.833 2.63 0.00 32.50 2.34
294 295 4.256110 CCTCTGCATTGAGTGATGTGTTA 58.744 43.478 2.63 0.00 32.50 2.41
295 296 3.079578 CCTCTGCATTGAGTGATGTGTT 58.920 45.455 2.63 0.00 32.50 3.32
296 297 2.708051 CCTCTGCATTGAGTGATGTGT 58.292 47.619 2.63 0.00 32.50 3.72
297 298 1.400846 GCCTCTGCATTGAGTGATGTG 59.599 52.381 2.63 0.00 37.47 3.21
298 299 1.681166 GGCCTCTGCATTGAGTGATGT 60.681 52.381 0.00 0.00 40.13 3.06
303 304 1.302285 CCTGGCCTCTGCATTGAGT 59.698 57.895 3.32 0.00 40.13 3.41
643 2310 3.626217 ACGATATGTAGCACACTCGAGAA 59.374 43.478 21.68 0.00 38.26 2.87
672 2339 3.599343 CAGGCCACGCACATGTATATAT 58.401 45.455 5.01 0.00 0.00 0.86
675 2342 0.179059 CCAGGCCACGCACATGTATA 60.179 55.000 5.01 0.00 0.00 1.47
677 2344 1.545706 TACCAGGCCACGCACATGTA 61.546 55.000 5.01 0.00 0.00 2.29
678 2345 2.889606 TACCAGGCCACGCACATGT 61.890 57.895 5.01 0.00 0.00 3.21
680 2347 2.046314 GTACCAGGCCACGCACAT 60.046 61.111 5.01 0.00 0.00 3.21
763 2439 0.179156 GCATCAATTGTCCAGCCACG 60.179 55.000 5.13 0.00 0.00 4.94
960 2663 1.602165 CGAGTAGGAGCGTGTGTGTTT 60.602 52.381 0.00 0.00 0.00 2.83
974 2677 3.436496 GCCACTGCTAGTTTACGAGTAG 58.564 50.000 6.57 6.57 37.35 2.57
989 2692 1.651240 CTTCTCCATTGCGGCCACTG 61.651 60.000 2.24 0.00 33.14 3.66
992 2695 0.677731 CTTCTTCTCCATTGCGGCCA 60.678 55.000 2.24 0.00 33.14 5.36
993 2696 0.392998 TCTTCTTCTCCATTGCGGCC 60.393 55.000 0.00 0.00 33.14 6.13
1089 2802 1.446272 CTTGTCCGCCTCGAAGACC 60.446 63.158 0.00 0.00 0.00 3.85
1281 2994 1.098712 GGTGACCAAACCTGACGCAA 61.099 55.000 0.00 0.00 37.24 4.85
1311 3024 0.248907 CGACGCCGACATACTCCATT 60.249 55.000 0.00 0.00 38.22 3.16
1500 3544 2.040012 GACAGAGGCATGGATGATGGAT 59.960 50.000 0.00 0.00 31.99 3.41
1501 3545 1.419012 GACAGAGGCATGGATGATGGA 59.581 52.381 0.00 0.00 31.99 3.41
1502 3546 1.876837 CGACAGAGGCATGGATGATGG 60.877 57.143 0.00 0.00 31.99 3.51
1503 3547 1.069668 TCGACAGAGGCATGGATGATG 59.930 52.381 0.00 0.00 34.84 3.07
1504 3548 1.069823 GTCGACAGAGGCATGGATGAT 59.930 52.381 11.55 0.00 0.00 2.45
1505 3549 0.461548 GTCGACAGAGGCATGGATGA 59.538 55.000 11.55 0.00 0.00 2.92
1506 3550 0.531532 GGTCGACAGAGGCATGGATG 60.532 60.000 18.91 0.00 0.00 3.51
1586 4348 5.417580 TGGCCGAAAGCTAAATATTTCACTT 59.582 36.000 3.39 6.86 43.05 3.16
1588 4350 5.243426 TGGCCGAAAGCTAAATATTTCAC 57.757 39.130 3.39 0.00 43.05 3.18
1616 4423 8.882736 TGATGTGTACTACTGAAATTGCTTATG 58.117 33.333 0.00 0.00 0.00 1.90
1710 4995 3.692101 TGATATCGGTTCGCATTTTGGTT 59.308 39.130 0.00 0.00 0.00 3.67
1719 5004 2.268298 ACAACAGTGATATCGGTTCGC 58.732 47.619 0.00 0.00 0.00 4.70
1721 5006 3.684788 AGCAACAACAGTGATATCGGTTC 59.315 43.478 0.00 0.00 0.00 3.62
1723 5008 3.334583 AGCAACAACAGTGATATCGGT 57.665 42.857 0.00 0.00 0.00 4.69
1724 5009 5.794687 TTTAGCAACAACAGTGATATCGG 57.205 39.130 0.00 0.00 0.00 4.18
1725 5010 7.060600 TCTTTTAGCAACAACAGTGATATCG 57.939 36.000 0.00 0.00 0.00 2.92
1726 5011 9.846248 AAATCTTTTAGCAACAACAGTGATATC 57.154 29.630 0.00 0.00 0.00 1.63
1731 5016 7.195646 TCAGAAATCTTTTAGCAACAACAGTG 58.804 34.615 0.00 0.00 0.00 3.66
1732 5017 7.333528 TCAGAAATCTTTTAGCAACAACAGT 57.666 32.000 0.00 0.00 0.00 3.55
1736 5021 8.465999 TCAGTTTCAGAAATCTTTTAGCAACAA 58.534 29.630 0.00 0.00 0.00 2.83
1737 5022 7.995289 TCAGTTTCAGAAATCTTTTAGCAACA 58.005 30.769 0.00 0.00 0.00 3.33
1738 5023 8.856490 TTCAGTTTCAGAAATCTTTTAGCAAC 57.144 30.769 0.00 0.00 0.00 4.17
1739 5024 9.520204 CTTTCAGTTTCAGAAATCTTTTAGCAA 57.480 29.630 0.00 0.00 34.75 3.91
1740 5025 8.686334 ACTTTCAGTTTCAGAAATCTTTTAGCA 58.314 29.630 0.00 0.00 34.75 3.49
1744 5029 9.927668 TTTCACTTTCAGTTTCAGAAATCTTTT 57.072 25.926 0.00 0.00 34.75 2.27
1748 5033 7.759433 TGGTTTTCACTTTCAGTTTCAGAAATC 59.241 33.333 0.00 0.00 34.75 2.17
1785 5070 4.337264 AGCTAGGGGTTGGAAAATTGAT 57.663 40.909 0.00 0.00 0.00 2.57
1786 5071 3.825908 AGCTAGGGGTTGGAAAATTGA 57.174 42.857 0.00 0.00 0.00 2.57
1787 5072 4.192429 CAAGCTAGGGGTTGGAAAATTG 57.808 45.455 0.00 0.00 44.37 2.32
1788 5073 5.399113 TTACAAGCTAGGGGTTGGAAAATT 58.601 37.500 11.61 0.00 46.65 1.82
1806 5091 6.775142 TCACTGATTGAAAAGGGACATTACAA 59.225 34.615 0.00 0.00 0.00 2.41
1848 5133 6.664816 TGGGGATAGGAAAAATATGATGCATC 59.335 38.462 20.14 20.14 0.00 3.91
1867 5152 0.980754 TGCCACGTGTATCTGGGGAT 60.981 55.000 15.65 0.00 36.07 3.85
1870 5155 0.460284 GTCTGCCACGTGTATCTGGG 60.460 60.000 15.65 0.00 0.00 4.45
1919 5204 2.043980 GGGTATGTTGGGCACACCG 61.044 63.158 0.00 0.00 45.41 4.94
1966 5251 2.292389 TGGATCACCTGCCCATCAAATT 60.292 45.455 0.00 0.00 37.04 1.82
2027 5312 2.083774 CGCTTGCCCTTTAACATCTCA 58.916 47.619 0.00 0.00 0.00 3.27
2048 5333 4.242475 TCAAGTAGCCAATGACAGTTACG 58.758 43.478 0.00 0.00 0.00 3.18
2078 5363 0.460284 ATTCAGCGGCTACGTCAAGG 60.460 55.000 0.26 0.00 43.45 3.61
2081 5366 0.735978 CACATTCAGCGGCTACGTCA 60.736 55.000 0.26 0.00 43.45 4.35
2090 5375 3.745332 TTTACATCTGCACATTCAGCG 57.255 42.857 0.00 0.00 34.19 5.18
2127 5412 6.612306 CGCAAGGGAGAAATAAATTATAGCC 58.388 40.000 0.00 0.00 0.00 3.93
2128 5413 6.086871 GCGCAAGGGAGAAATAAATTATAGC 58.913 40.000 0.30 0.00 38.28 2.97
2143 5520 0.685097 AGTTACTTCTGCGCAAGGGA 59.315 50.000 13.05 1.77 38.28 4.20
2144 5521 2.380084 TAGTTACTTCTGCGCAAGGG 57.620 50.000 13.05 6.58 38.28 3.95
2146 5523 6.531948 AGAACTTATAGTTACTTCTGCGCAAG 59.468 38.462 13.05 9.93 38.80 4.01
2168 5547 7.201741 TTGTCATACCAACAAAAATCGTGAGAA 60.202 33.333 0.00 0.00 37.39 2.87
2185 5565 2.616842 CGGCCCTATTGTTTGTCATACC 59.383 50.000 0.00 0.00 0.00 2.73
2187 5567 3.637911 ACGGCCCTATTGTTTGTCATA 57.362 42.857 0.00 0.00 0.00 2.15
2205 5585 7.679634 CACAATTTCATCGAATTGCTAAAAACG 59.320 33.333 7.33 0.00 46.14 3.60
2215 5595 8.514594 AGACAATGTACACAATTTCATCGAATT 58.485 29.630 0.00 0.00 0.00 2.17
2463 5865 0.322816 TCAAGATGGTGGCCAAGAGC 60.323 55.000 7.24 0.00 36.95 4.09
3443 6877 9.778741 ACATACTAAGTTGATATAACCCACATG 57.221 33.333 0.00 0.00 0.00 3.21
3488 6931 6.270000 TGATCGACCATAAAGGATAATCAGGT 59.730 38.462 0.00 0.00 41.22 4.00
3620 7064 9.179552 CTCATATCGAGATGTTCTCAGTTTAAG 57.820 37.037 18.85 1.79 45.45 1.85
3637 7081 4.270084 GCGTGGTTCATTTTCTCATATCGA 59.730 41.667 0.00 0.00 0.00 3.59
3691 7135 2.309528 TTCTGTGTGTCACCAGTCAC 57.690 50.000 16.35 3.31 34.90 3.67
3693 7137 4.569943 ACATATTCTGTGTGTCACCAGTC 58.430 43.478 16.35 1.25 36.48 3.51
3694 7138 4.623932 ACATATTCTGTGTGTCACCAGT 57.376 40.909 16.35 5.92 36.48 4.00
3695 7139 5.469760 TCAAACATATTCTGTGTGTCACCAG 59.530 40.000 12.68 12.68 42.78 4.00
3696 7140 5.372373 TCAAACATATTCTGTGTGTCACCA 58.628 37.500 0.00 0.00 42.78 4.17
3697 7141 5.940192 TCAAACATATTCTGTGTGTCACC 57.060 39.130 0.00 0.00 42.78 4.02
3698 7142 7.332926 AGAGATCAAACATATTCTGTGTGTCAC 59.667 37.037 0.00 0.00 42.78 3.67
3755 7213 9.756571 GGATTAATCCTAGTCTAGATGGTTAGA 57.243 37.037 24.74 0.00 43.73 2.10
3792 7256 0.396811 GGCTGACATAATAGGCGGGT 59.603 55.000 0.00 0.00 0.00 5.28
3828 7293 0.035056 CTCCCATGGAGCGTTTCCTT 60.035 55.000 15.22 1.16 46.92 3.36
3899 7370 2.360801 TGCAACACTAGAAAAGGTTGGC 59.639 45.455 0.00 1.49 37.10 4.52
3900 7371 3.380004 TGTGCAACACTAGAAAAGGTTGG 59.620 43.478 0.00 0.00 45.67 3.77
3906 7377 9.109393 GGAATATATCTGTGCAACACTAGAAAA 57.891 33.333 0.00 0.00 45.67 2.29
4148 7619 4.534647 ATGGCACCCCTGTTATGATTTA 57.465 40.909 0.00 0.00 0.00 1.40
4166 7637 9.956720 GAATTGGATTCTTGTAATGAAGTATGG 57.043 33.333 0.00 0.00 33.23 2.74
4187 7658 4.801891 CCTTGTGACTTGTCATGGAATTG 58.198 43.478 6.74 0.00 32.78 2.32
4227 7698 6.072728 TGGGTTGTTCGATTATCACTCTTTTG 60.073 38.462 0.00 0.00 0.00 2.44
4287 7758 6.589907 GTCACCTGTTTGTTTCTCACATTTTT 59.410 34.615 0.00 0.00 34.43 1.94
4340 7811 0.670854 GAAGTGGGGTTCGAGCACTC 60.671 60.000 0.26 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.