Multiple sequence alignment - TraesCS2D01G070000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G070000 chr2D 100.000 4678 0 0 1 4678 29491793 29496470 0.000000e+00 8639.0
1 TraesCS2D01G070000 chr2D 94.454 559 31 0 248 806 158249731 158249173 0.000000e+00 861.0
2 TraesCS2D01G070000 chr2D 96.565 262 5 4 1 261 392721612 392721354 9.300000e-117 431.0
3 TraesCS2D01G070000 chr2B 94.928 2208 84 12 1536 3729 47520040 47522233 0.000000e+00 3432.0
4 TraesCS2D01G070000 chr2B 92.255 581 36 5 964 1538 47519291 47519868 0.000000e+00 815.0
5 TraesCS2D01G070000 chr2B 94.309 492 15 1 3245 3736 47672642 47673120 0.000000e+00 741.0
6 TraesCS2D01G070000 chr2B 91.652 551 21 9 4131 4678 47654308 47654836 0.000000e+00 739.0
7 TraesCS2D01G070000 chr2B 99.588 243 1 0 1 243 567565473 567565715 1.190000e-120 444.0
8 TraesCS2D01G070000 chr2B 98.723 235 3 0 3733 3967 47673154 47673388 7.240000e-113 418.0
9 TraesCS2D01G070000 chr2B 91.525 118 5 2 3733 3845 47522274 47522391 1.740000e-34 158.0
10 TraesCS2D01G070000 chr2B 90.083 121 9 1 4561 4678 47673709 47673829 2.250000e-33 154.0
11 TraesCS2D01G070000 chr2B 98.718 78 1 0 4015 4092 47673634 47673711 6.310000e-29 139.0
12 TraesCS2D01G070000 chr2B 82.424 165 17 9 1257 1421 21218985 21218833 2.940000e-27 134.0
13 TraesCS2D01G070000 chr2B 89.524 105 11 0 3859 3963 47522568 47522672 2.940000e-27 134.0
14 TraesCS2D01G070000 chr2A 91.707 1254 71 22 2504 3736 31692103 31693344 0.000000e+00 1709.0
15 TraesCS2D01G070000 chr2A 92.657 572 25 9 972 1537 31690133 31690693 0.000000e+00 808.0
16 TraesCS2D01G070000 chr2A 81.384 795 102 23 1689 2460 31691334 31692105 1.440000e-169 606.0
17 TraesCS2D01G070000 chr2A 88.432 389 28 7 1536 1916 31690852 31691231 1.980000e-123 453.0
18 TraesCS2D01G070000 chr4D 95.230 566 27 0 241 806 13255276 13254711 0.000000e+00 896.0
19 TraesCS2D01G070000 chr7D 95.053 566 26 2 241 806 623766046 623765483 0.000000e+00 889.0
20 TraesCS2D01G070000 chr7D 97.647 255 2 4 1 254 194651670 194651419 7.190000e-118 435.0
21 TraesCS2D01G070000 chr6A 94.700 566 30 0 241 806 15494701 15495266 0.000000e+00 880.0
22 TraesCS2D01G070000 chr6D 94.396 571 26 4 241 805 401164874 401165444 0.000000e+00 872.0
23 TraesCS2D01G070000 chr6D 93.322 569 37 1 238 806 433678444 433679011 0.000000e+00 839.0
24 TraesCS2D01G070000 chr6D 99.184 245 2 0 1 245 116531070 116530826 4.300000e-120 442.0
25 TraesCS2D01G070000 chr6D 98.785 247 3 0 1 247 48798755 48799001 1.550000e-119 440.0
26 TraesCS2D01G070000 chr1D 94.149 564 26 2 241 804 449649066 449648510 0.000000e+00 852.0
27 TraesCS2D01G070000 chr1D 89.721 681 46 8 241 919 269500309 269500967 0.000000e+00 848.0
28 TraesCS2D01G070000 chr1D 99.587 242 1 0 1 242 103459431 103459672 4.300000e-120 442.0
29 TraesCS2D01G070000 chr1D 99.587 242 1 0 1 242 163073384 163073625 4.300000e-120 442.0
30 TraesCS2D01G070000 chr1D 95.911 269 10 1 1 268 428483372 428483104 7.190000e-118 435.0
31 TraesCS2D01G070000 chr1D 88.889 54 4 2 876 927 364514240 364514187 1.090000e-06 65.8
32 TraesCS2D01G070000 chr5A 88.954 679 53 6 241 919 535226091 535225435 0.000000e+00 819.0
33 TraesCS2D01G070000 chr1A 98.805 251 2 1 1 250 154477892 154478142 3.320000e-121 446.0
34 TraesCS2D01G070000 chr5B 82.927 164 16 9 1257 1420 589822528 589822377 2.270000e-28 137.0
35 TraesCS2D01G070000 chr3B 82.424 165 17 9 1257 1421 544114214 544114366 2.940000e-27 134.0
36 TraesCS2D01G070000 chr7B 81.818 165 18 9 1257 1421 329209107 329209259 1.370000e-25 128.0
37 TraesCS2D01G070000 chr4A 85.833 120 15 2 805 923 103343355 103343237 4.910000e-25 126.0
38 TraesCS2D01G070000 chrUn 81.290 155 17 9 1267 1421 82542850 82542708 1.060000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G070000 chr2D 29491793 29496470 4677 False 8639.00 8639 100.00000 1 4678 1 chr2D.!!$F1 4677
1 TraesCS2D01G070000 chr2D 158249173 158249731 558 True 861.00 861 94.45400 248 806 1 chr2D.!!$R1 558
2 TraesCS2D01G070000 chr2B 47519291 47522672 3381 False 1134.75 3432 92.05800 964 3963 4 chr2B.!!$F3 2999
3 TraesCS2D01G070000 chr2B 47654308 47654836 528 False 739.00 739 91.65200 4131 4678 1 chr2B.!!$F1 547
4 TraesCS2D01G070000 chr2B 47672642 47673829 1187 False 363.00 741 95.45825 3245 4678 4 chr2B.!!$F4 1433
5 TraesCS2D01G070000 chr2A 31690133 31693344 3211 False 894.00 1709 88.54500 972 3736 4 chr2A.!!$F1 2764
6 TraesCS2D01G070000 chr4D 13254711 13255276 565 True 896.00 896 95.23000 241 806 1 chr4D.!!$R1 565
7 TraesCS2D01G070000 chr7D 623765483 623766046 563 True 889.00 889 95.05300 241 806 1 chr7D.!!$R2 565
8 TraesCS2D01G070000 chr6A 15494701 15495266 565 False 880.00 880 94.70000 241 806 1 chr6A.!!$F1 565
9 TraesCS2D01G070000 chr6D 401164874 401165444 570 False 872.00 872 94.39600 241 805 1 chr6D.!!$F2 564
10 TraesCS2D01G070000 chr6D 433678444 433679011 567 False 839.00 839 93.32200 238 806 1 chr6D.!!$F3 568
11 TraesCS2D01G070000 chr1D 449648510 449649066 556 True 852.00 852 94.14900 241 804 1 chr1D.!!$R3 563
12 TraesCS2D01G070000 chr1D 269500309 269500967 658 False 848.00 848 89.72100 241 919 1 chr1D.!!$F3 678
13 TraesCS2D01G070000 chr5A 535225435 535226091 656 True 819.00 819 88.95400 241 919 1 chr5A.!!$R1 678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
943 953 0.037303 CTTGGAGCTCCCTGCAGAAA 59.963 55.000 29.95 14.23 45.94 2.52 F
1210 1220 0.321298 GCTTCAGTTAACCGCCCTGA 60.321 55.000 0.88 0.00 33.59 3.86 F
1875 2071 1.133790 CAAGAGGCAGCAAATAGTGGC 59.866 52.381 0.00 0.00 39.48 5.01 F
2897 3448 1.529244 GACTTGCAGGGGTGCTGTT 60.529 57.895 0.00 0.00 35.49 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 2495 0.248621 ACAACGCTGCTTTCAGTTGC 60.249 50.000 14.47 0.0 45.42 4.17 R
2225 2762 1.001746 AGCAGCTCATATGATGGTCCG 59.998 52.381 5.72 0.0 27.08 4.79 R
3667 4241 0.107897 TGCGTCAGGTCACACAACTT 60.108 50.000 0.00 0.0 0.00 2.66 R
4011 4796 0.036732 TCTGCTTTGTTGAGGCCGAT 59.963 50.000 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.413928 TGGACGGCCCAAAGAATG 57.586 55.556 3.83 0.00 43.29 2.67
43 44 1.458486 TGGACGGCCCAAAGAATGT 59.542 52.632 3.83 0.00 43.29 2.71
44 45 0.608035 TGGACGGCCCAAAGAATGTC 60.608 55.000 3.83 0.00 43.29 3.06
45 46 0.608035 GGACGGCCCAAAGAATGTCA 60.608 55.000 0.00 0.00 34.14 3.58
46 47 1.463674 GACGGCCCAAAGAATGTCAT 58.536 50.000 0.00 0.00 0.00 3.06
47 48 1.133025 GACGGCCCAAAGAATGTCATG 59.867 52.381 0.00 0.00 0.00 3.07
48 49 0.179129 CGGCCCAAAGAATGTCATGC 60.179 55.000 0.00 0.00 0.00 4.06
49 50 0.896923 GGCCCAAAGAATGTCATGCA 59.103 50.000 0.00 0.00 0.00 3.96
50 51 1.134907 GGCCCAAAGAATGTCATGCAG 60.135 52.381 0.00 0.00 0.00 4.41
51 52 1.738030 GCCCAAAGAATGTCATGCAGC 60.738 52.381 0.00 0.00 0.00 5.25
52 53 1.822990 CCCAAAGAATGTCATGCAGCT 59.177 47.619 0.00 0.00 0.00 4.24
53 54 2.416836 CCCAAAGAATGTCATGCAGCTG 60.417 50.000 10.11 10.11 0.00 4.24
54 55 2.259618 CAAAGAATGTCATGCAGCTGC 58.740 47.619 31.89 31.89 42.50 5.25
55 56 0.450583 AAGAATGTCATGCAGCTGCG 59.549 50.000 32.11 19.83 45.83 5.18
56 57 0.675837 AGAATGTCATGCAGCTGCGT 60.676 50.000 32.11 30.01 45.83 5.24
57 58 0.247974 GAATGTCATGCAGCTGCGTC 60.248 55.000 30.32 20.19 45.83 5.19
58 59 0.675837 AATGTCATGCAGCTGCGTCT 60.676 50.000 30.32 16.08 45.83 4.18
59 60 1.088340 ATGTCATGCAGCTGCGTCTC 61.088 55.000 30.32 23.67 45.83 3.36
60 61 2.125391 TCATGCAGCTGCGTCTCC 60.125 61.111 30.32 5.04 45.83 3.71
61 62 3.561213 CATGCAGCTGCGTCTCCG 61.561 66.667 30.32 15.60 45.83 4.63
62 63 4.827087 ATGCAGCTGCGTCTCCGG 62.827 66.667 32.11 0.00 45.83 5.14
80 81 2.746277 CCCGCCCAGGACGAAAAG 60.746 66.667 0.00 0.00 45.00 2.27
81 82 3.431725 CCGCCCAGGACGAAAAGC 61.432 66.667 0.00 0.00 45.00 3.51
82 83 3.431725 CGCCCAGGACGAAAAGCC 61.432 66.667 0.00 0.00 0.00 4.35
83 84 3.062466 GCCCAGGACGAAAAGCCC 61.062 66.667 0.00 0.00 0.00 5.19
84 85 2.434331 CCCAGGACGAAAAGCCCA 59.566 61.111 0.00 0.00 0.00 5.36
85 86 1.000896 CCCAGGACGAAAAGCCCAT 60.001 57.895 0.00 0.00 0.00 4.00
86 87 0.611896 CCCAGGACGAAAAGCCCATT 60.612 55.000 0.00 0.00 0.00 3.16
87 88 1.256812 CCAGGACGAAAAGCCCATTT 58.743 50.000 0.00 0.00 0.00 2.32
88 89 1.618343 CCAGGACGAAAAGCCCATTTT 59.382 47.619 0.00 0.00 43.88 1.82
98 99 5.750352 AAAAGCCCATTTTCTGTCATGAT 57.250 34.783 0.00 0.00 36.31 2.45
99 100 5.750352 AAAGCCCATTTTCTGTCATGATT 57.250 34.783 0.00 0.00 0.00 2.57
100 101 5.750352 AAGCCCATTTTCTGTCATGATTT 57.250 34.783 0.00 0.00 0.00 2.17
101 102 5.750352 AGCCCATTTTCTGTCATGATTTT 57.250 34.783 0.00 0.00 0.00 1.82
102 103 6.117975 AGCCCATTTTCTGTCATGATTTTT 57.882 33.333 0.00 0.00 0.00 1.94
122 123 4.755266 TTTGTCATAGAAGTAGGAGCCC 57.245 45.455 0.00 0.00 0.00 5.19
123 124 3.398318 TGTCATAGAAGTAGGAGCCCA 57.602 47.619 0.00 0.00 0.00 5.36
124 125 3.031736 TGTCATAGAAGTAGGAGCCCAC 58.968 50.000 0.00 0.00 0.00 4.61
125 126 2.365941 GTCATAGAAGTAGGAGCCCACC 59.634 54.545 0.00 0.00 0.00 4.61
126 127 2.023404 TCATAGAAGTAGGAGCCCACCA 60.023 50.000 0.00 0.00 0.00 4.17
127 128 1.861982 TAGAAGTAGGAGCCCACCAC 58.138 55.000 0.00 0.00 0.00 4.16
128 129 0.178903 AGAAGTAGGAGCCCACCACA 60.179 55.000 0.00 0.00 0.00 4.17
129 130 0.912486 GAAGTAGGAGCCCACCACAT 59.088 55.000 0.00 0.00 0.00 3.21
130 131 0.912486 AAGTAGGAGCCCACCACATC 59.088 55.000 0.00 0.00 0.00 3.06
131 132 0.043334 AGTAGGAGCCCACCACATCT 59.957 55.000 0.00 0.00 0.00 2.90
132 133 1.291033 AGTAGGAGCCCACCACATCTA 59.709 52.381 0.00 0.00 0.00 1.98
133 134 2.090494 AGTAGGAGCCCACCACATCTAT 60.090 50.000 0.00 0.00 0.00 1.98
134 135 1.135094 AGGAGCCCACCACATCTATG 58.865 55.000 0.00 0.00 0.00 2.23
135 136 1.131638 GGAGCCCACCACATCTATGA 58.868 55.000 0.00 0.00 0.00 2.15
136 137 1.701847 GGAGCCCACCACATCTATGAT 59.298 52.381 0.00 0.00 0.00 2.45
137 138 2.551721 GGAGCCCACCACATCTATGATG 60.552 54.545 6.06 6.06 0.00 3.07
138 139 2.369860 GAGCCCACCACATCTATGATGA 59.630 50.000 13.63 0.00 0.00 2.92
139 140 2.984604 AGCCCACCACATCTATGATGAT 59.015 45.455 13.63 0.00 0.00 2.45
140 141 4.170449 AGCCCACCACATCTATGATGATA 58.830 43.478 13.63 0.00 0.00 2.15
141 142 4.019860 AGCCCACCACATCTATGATGATAC 60.020 45.833 13.63 0.00 0.00 2.24
142 143 4.836825 CCCACCACATCTATGATGATACC 58.163 47.826 13.63 0.00 0.00 2.73
143 144 4.498241 CCACCACATCTATGATGATACCG 58.502 47.826 13.63 0.06 0.00 4.02
144 145 4.498241 CACCACATCTATGATGATACCGG 58.502 47.826 13.63 0.00 0.00 5.28
145 146 3.515502 ACCACATCTATGATGATACCGGG 59.484 47.826 6.32 0.00 0.00 5.73
146 147 3.515502 CCACATCTATGATGATACCGGGT 59.484 47.826 6.32 4.46 0.00 5.28
147 148 4.020218 CCACATCTATGATGATACCGGGTT 60.020 45.833 4.31 0.00 0.00 4.11
148 149 5.513094 CCACATCTATGATGATACCGGGTTT 60.513 44.000 4.31 0.00 0.00 3.27
149 150 5.997746 CACATCTATGATGATACCGGGTTTT 59.002 40.000 4.31 0.00 0.00 2.43
150 151 6.486657 CACATCTATGATGATACCGGGTTTTT 59.513 38.462 4.31 0.00 0.00 1.94
174 175 8.771920 TTTCACAATTATCGTCATAGAAGTGT 57.228 30.769 0.00 0.00 0.00 3.55
175 176 7.987268 TCACAATTATCGTCATAGAAGTGTC 57.013 36.000 0.00 0.00 0.00 3.67
176 177 7.543756 TCACAATTATCGTCATAGAAGTGTCA 58.456 34.615 0.00 0.00 0.00 3.58
177 178 8.197439 TCACAATTATCGTCATAGAAGTGTCAT 58.803 33.333 0.00 0.00 0.00 3.06
178 179 9.463443 CACAATTATCGTCATAGAAGTGTCATA 57.537 33.333 0.00 0.00 0.00 2.15
185 186 8.391075 TCGTCATAGAAGTGTCATATGTATGA 57.609 34.615 1.90 4.48 40.19 2.15
211 212 2.892784 AAAAATTCGTTCGGCCCAAA 57.107 40.000 0.00 0.00 0.00 3.28
212 213 2.892784 AAAATTCGTTCGGCCCAAAA 57.107 40.000 0.00 0.00 0.00 2.44
213 214 3.394674 AAAATTCGTTCGGCCCAAAAT 57.605 38.095 0.00 0.00 0.00 1.82
214 215 2.362169 AATTCGTTCGGCCCAAAATG 57.638 45.000 0.00 0.00 0.00 2.32
215 216 1.253100 ATTCGTTCGGCCCAAAATGT 58.747 45.000 0.00 0.00 0.00 2.71
216 217 0.594110 TTCGTTCGGCCCAAAATGTC 59.406 50.000 0.00 0.00 0.00 3.06
217 218 0.535328 TCGTTCGGCCCAAAATGTCA 60.535 50.000 0.00 0.00 0.00 3.58
218 219 0.386731 CGTTCGGCCCAAAATGTCAC 60.387 55.000 0.00 0.00 0.00 3.67
219 220 0.386731 GTTCGGCCCAAAATGTCACG 60.387 55.000 0.00 0.00 0.00 4.35
220 221 1.519751 TTCGGCCCAAAATGTCACGG 61.520 55.000 0.00 0.00 0.00 4.94
221 222 1.969064 CGGCCCAAAATGTCACGGA 60.969 57.895 0.00 0.00 0.00 4.69
222 223 1.312371 CGGCCCAAAATGTCACGGAT 61.312 55.000 0.00 0.00 0.00 4.18
223 224 0.173255 GGCCCAAAATGTCACGGATG 59.827 55.000 0.00 0.00 0.00 3.51
224 225 0.887933 GCCCAAAATGTCACGGATGT 59.112 50.000 0.00 0.00 0.00 3.06
226 227 1.885887 CCCAAAATGTCACGGATGTGT 59.114 47.619 0.00 0.00 46.49 3.72
227 228 2.095263 CCCAAAATGTCACGGATGTGTC 60.095 50.000 0.00 0.00 46.49 3.67
228 229 2.813754 CCAAAATGTCACGGATGTGTCT 59.186 45.455 0.00 0.00 46.49 3.41
229 230 3.253188 CCAAAATGTCACGGATGTGTCTT 59.747 43.478 0.00 0.00 46.49 3.01
230 231 4.261572 CCAAAATGTCACGGATGTGTCTTT 60.262 41.667 0.00 0.00 46.49 2.52
231 232 5.280945 CAAAATGTCACGGATGTGTCTTTT 58.719 37.500 0.00 0.00 46.49 2.27
232 233 5.514274 AAATGTCACGGATGTGTCTTTTT 57.486 34.783 0.00 0.00 46.49 1.94
282 283 1.497991 CTTCGTCAAGCCAAAGTCGA 58.502 50.000 0.00 0.00 0.00 4.20
495 502 2.801022 TCGTCGTCATCGAAGACAGCA 61.801 52.381 19.69 1.26 45.90 4.41
556 564 3.246112 CGGTCAGGGGTCCACCAA 61.246 66.667 0.00 0.00 42.91 3.67
712 722 8.800370 TGTCTAATATATGTCAAAGTTTGCCA 57.200 30.769 10.90 6.23 0.00 4.92
845 855 2.584391 GGACCAACTCGCCTCCAGT 61.584 63.158 0.00 0.00 0.00 4.00
846 856 1.374758 GACCAACTCGCCTCCAGTG 60.375 63.158 0.00 0.00 0.00 3.66
873 883 2.166130 TTGCGTCGGCTCATCTCCAA 62.166 55.000 0.00 0.00 40.82 3.53
889 899 0.523966 CCAAACGGCGATTTTAGGCA 59.476 50.000 16.62 0.00 0.00 4.75
895 905 0.683179 GGCGATTTTAGGCACCCCTT 60.683 55.000 0.00 0.00 42.87 3.95
919 929 3.805267 CAACGGCTGGAGATGCTC 58.195 61.111 0.00 0.00 0.00 4.26
920 930 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
921 931 1.088340 CAACGGCTGGAGATGCTCTG 61.088 60.000 0.00 0.00 0.00 3.35
922 932 1.260538 AACGGCTGGAGATGCTCTGA 61.261 55.000 0.00 0.00 0.00 3.27
923 933 1.260538 ACGGCTGGAGATGCTCTGAA 61.261 55.000 0.00 0.00 0.00 3.02
924 934 0.809241 CGGCTGGAGATGCTCTGAAC 60.809 60.000 0.00 0.00 0.00 3.18
925 935 0.540923 GGCTGGAGATGCTCTGAACT 59.459 55.000 0.00 0.00 0.00 3.01
926 936 1.065564 GGCTGGAGATGCTCTGAACTT 60.066 52.381 0.00 0.00 0.00 2.66
927 937 2.008329 GCTGGAGATGCTCTGAACTTG 58.992 52.381 0.00 0.00 0.00 3.16
928 938 2.630158 CTGGAGATGCTCTGAACTTGG 58.370 52.381 0.00 0.00 0.00 3.61
929 939 2.235650 CTGGAGATGCTCTGAACTTGGA 59.764 50.000 0.00 0.00 0.00 3.53
930 940 2.235650 TGGAGATGCTCTGAACTTGGAG 59.764 50.000 0.00 0.00 0.00 3.86
935 945 3.851051 CTCTGAACTTGGAGCTCCC 57.149 57.895 29.95 14.41 34.29 4.30
936 946 1.274712 CTCTGAACTTGGAGCTCCCT 58.725 55.000 29.95 11.76 35.38 4.20
937 947 0.979665 TCTGAACTTGGAGCTCCCTG 59.020 55.000 29.95 22.90 35.38 4.45
938 948 0.676151 CTGAACTTGGAGCTCCCTGC 60.676 60.000 29.95 14.64 43.29 4.85
939 949 1.376466 GAACTTGGAGCTCCCTGCA 59.624 57.895 29.95 8.52 45.94 4.41
940 950 0.676151 GAACTTGGAGCTCCCTGCAG 60.676 60.000 29.95 20.75 45.94 4.41
941 951 1.130054 AACTTGGAGCTCCCTGCAGA 61.130 55.000 29.95 7.26 45.94 4.26
942 952 1.130054 ACTTGGAGCTCCCTGCAGAA 61.130 55.000 29.95 14.96 45.94 3.02
943 953 0.037303 CTTGGAGCTCCCTGCAGAAA 59.963 55.000 29.95 14.23 45.94 2.52
944 954 0.700564 TTGGAGCTCCCTGCAGAAAT 59.299 50.000 29.95 0.00 45.94 2.17
945 955 1.583556 TGGAGCTCCCTGCAGAAATA 58.416 50.000 29.95 3.96 45.94 1.40
946 956 1.487976 TGGAGCTCCCTGCAGAAATAG 59.512 52.381 29.95 7.70 45.94 1.73
947 957 1.765314 GGAGCTCCCTGCAGAAATAGA 59.235 52.381 23.19 2.82 45.94 1.98
948 958 2.224257 GGAGCTCCCTGCAGAAATAGAG 60.224 54.545 23.19 13.32 45.94 2.43
949 959 1.767681 AGCTCCCTGCAGAAATAGAGG 59.232 52.381 17.39 5.88 45.94 3.69
950 960 1.488393 GCTCCCTGCAGAAATAGAGGT 59.512 52.381 17.39 0.00 42.31 3.85
951 961 2.092699 GCTCCCTGCAGAAATAGAGGTT 60.093 50.000 17.39 0.00 42.31 3.50
952 962 3.134804 GCTCCCTGCAGAAATAGAGGTTA 59.865 47.826 17.39 0.00 42.31 2.85
953 963 4.384208 GCTCCCTGCAGAAATAGAGGTTAA 60.384 45.833 17.39 0.00 42.31 2.01
954 964 5.099042 TCCCTGCAGAAATAGAGGTTAAC 57.901 43.478 17.39 0.00 0.00 2.01
955 965 4.080526 TCCCTGCAGAAATAGAGGTTAACC 60.081 45.833 17.39 17.41 0.00 2.85
956 966 4.200092 CCTGCAGAAATAGAGGTTAACCC 58.800 47.826 21.30 12.48 36.42 4.11
957 967 4.324254 CCTGCAGAAATAGAGGTTAACCCA 60.324 45.833 21.30 7.32 36.42 4.51
958 968 5.440610 CTGCAGAAATAGAGGTTAACCCAT 58.559 41.667 21.30 12.35 36.42 4.00
959 969 5.437060 TGCAGAAATAGAGGTTAACCCATC 58.563 41.667 21.30 13.02 36.42 3.51
960 970 5.045213 TGCAGAAATAGAGGTTAACCCATCA 60.045 40.000 21.30 4.71 36.42 3.07
961 971 5.529060 GCAGAAATAGAGGTTAACCCATCAG 59.471 44.000 21.30 8.52 36.42 2.90
962 972 6.653989 CAGAAATAGAGGTTAACCCATCAGT 58.346 40.000 21.30 0.72 36.42 3.41
963 973 6.763610 CAGAAATAGAGGTTAACCCATCAGTC 59.236 42.308 21.30 10.83 36.42 3.51
964 974 5.632034 AATAGAGGTTAACCCATCAGTCC 57.368 43.478 21.30 1.13 36.42 3.85
965 975 3.207044 AGAGGTTAACCCATCAGTCCT 57.793 47.619 21.30 0.00 36.42 3.85
1203 1213 3.127030 CCAATCGGAAGCTTCAGTTAACC 59.873 47.826 27.02 8.35 0.00 2.85
1205 1215 0.442699 CGGAAGCTTCAGTTAACCGC 59.557 55.000 27.02 6.18 33.03 5.68
1206 1216 0.803117 GGAAGCTTCAGTTAACCGCC 59.197 55.000 27.02 3.24 0.00 6.13
1210 1220 0.321298 GCTTCAGTTAACCGCCCTGA 60.321 55.000 0.88 0.00 33.59 3.86
1350 1360 3.953352 TCTTCTTGGATGGGGGATATGA 58.047 45.455 0.00 0.00 0.00 2.15
1351 1361 4.516283 TCTTCTTGGATGGGGGATATGAT 58.484 43.478 0.00 0.00 0.00 2.45
1352 1362 4.921991 TCTTCTTGGATGGGGGATATGATT 59.078 41.667 0.00 0.00 0.00 2.57
1353 1363 4.934797 TCTTGGATGGGGGATATGATTC 57.065 45.455 0.00 0.00 0.00 2.52
1354 1364 4.516283 TCTTGGATGGGGGATATGATTCT 58.484 43.478 0.00 0.00 0.00 2.40
1356 1366 3.612458 TGGATGGGGGATATGATTCTGT 58.388 45.455 0.00 0.00 0.00 3.41
1357 1367 3.588842 TGGATGGGGGATATGATTCTGTC 59.411 47.826 0.00 0.00 0.00 3.51
1358 1368 3.054065 GGATGGGGGATATGATTCTGTCC 60.054 52.174 0.00 0.00 0.00 4.02
1359 1369 1.977854 TGGGGGATATGATTCTGTCCG 59.022 52.381 0.00 0.00 0.00 4.79
1375 1388 2.429930 CGTGCTTGGGGGAAGTGA 59.570 61.111 0.00 0.00 33.73 3.41
1377 1390 1.603739 GTGCTTGGGGGAAGTGACC 60.604 63.158 0.00 0.00 33.73 4.02
1436 1449 1.134965 CGGTGGACTCTGTCAAGATCC 60.135 57.143 0.07 0.00 33.68 3.36
1438 1451 1.134965 GTGGACTCTGTCAAGATCCGG 60.135 57.143 0.00 0.00 34.96 5.14
1453 1466 2.872557 CGGTACTCGCCGTTCTCA 59.127 61.111 0.00 0.00 46.11 3.27
1519 1532 1.561542 CCATTTGAGGGTCCTAGCTGT 59.438 52.381 0.00 0.00 0.00 4.40
1593 1780 5.703130 GGGCATGATATGAGTTACCTTTCTC 59.297 44.000 0.00 0.00 0.00 2.87
1741 1936 6.437928 TCTATAATCCGAAATTTGTGCATGC 58.562 36.000 11.82 11.82 0.00 4.06
1825 2021 3.285484 CTGCCACCTCTTATTTCTGCAT 58.715 45.455 0.00 0.00 0.00 3.96
1875 2071 1.133790 CAAGAGGCAGCAAATAGTGGC 59.866 52.381 0.00 0.00 39.48 5.01
1893 2089 4.460382 AGTGGCCATTCTGTAGAACAATTG 59.540 41.667 9.72 3.24 36.80 2.32
1909 2438 6.262273 AGAACAATTGTACTGTGAACGGAATT 59.738 34.615 12.39 0.00 0.00 2.17
1919 2448 6.454795 ACTGTGAACGGAATTTGCAAAATAT 58.545 32.000 17.19 5.56 0.00 1.28
2019 2556 4.808895 TCGTGAACCCAATTCTATCATTCG 59.191 41.667 0.00 0.00 38.25 3.34
2072 2609 8.325787 TGTCTCCATGGTTAACAATACATAGTT 58.674 33.333 12.58 0.00 0.00 2.24
2153 2690 6.351711 TCTGATGTGCATTATTAAGCTCTGT 58.648 36.000 0.00 0.00 0.00 3.41
2154 2691 6.825213 TCTGATGTGCATTATTAAGCTCTGTT 59.175 34.615 0.00 0.00 0.00 3.16
2155 2692 7.011763 TCTGATGTGCATTATTAAGCTCTGTTC 59.988 37.037 0.00 0.00 0.00 3.18
2158 2695 8.737168 ATGTGCATTATTAAGCTCTGTTCTTA 57.263 30.769 0.00 0.00 0.00 2.10
2225 2762 6.222185 CGTAGAACTTCGTGAACGTTATTTC 58.778 40.000 0.00 0.00 40.80 2.17
2241 2778 5.163953 CGTTATTTCGGACCATCATATGAGC 60.164 44.000 11.78 0.84 0.00 4.26
2365 2902 3.553508 GGGGCATCAAATGTGCATATCAC 60.554 47.826 0.00 0.00 44.25 3.06
2544 3089 4.595762 AGTCAGTGCATCAATTTGCTTT 57.404 36.364 3.90 0.00 43.18 3.51
2545 3090 4.952460 AGTCAGTGCATCAATTTGCTTTT 58.048 34.783 3.90 0.00 43.18 2.27
2836 3387 5.048852 GCAATAGATGAAGCAGATCCCTTTC 60.049 44.000 0.00 0.00 0.00 2.62
2897 3448 1.529244 GACTTGCAGGGGTGCTGTT 60.529 57.895 0.00 0.00 35.49 3.16
2944 3495 7.270047 TGGGTACTTGTACTTGCATTACTATC 58.730 38.462 10.26 0.00 0.00 2.08
3125 3695 7.771361 TGTAATTCAGTGTCCAGTGTTCTTTTA 59.229 33.333 2.28 0.00 33.58 1.52
3710 4289 7.605691 GCAGATTTGATCCTGTACTGCTATATT 59.394 37.037 16.15 0.00 43.54 1.28
3773 4395 1.993948 GTTACTCCCTCGGCCCCTT 60.994 63.158 0.00 0.00 0.00 3.95
3845 4467 6.094742 TCTGCTTGGAAATATGCGATGTTTTA 59.905 34.615 0.00 0.00 0.00 1.52
3967 4752 5.195001 TGTTGGTCAAAGCTTGATAAACC 57.805 39.130 0.00 4.45 42.47 3.27
3968 4753 4.892934 TGTTGGTCAAAGCTTGATAAACCT 59.107 37.500 0.00 0.00 42.47 3.50
3969 4754 5.009610 TGTTGGTCAAAGCTTGATAAACCTC 59.990 40.000 0.00 3.11 42.47 3.85
3970 4755 4.724399 TGGTCAAAGCTTGATAAACCTCA 58.276 39.130 0.00 0.00 42.47 3.86
3971 4756 5.324409 TGGTCAAAGCTTGATAAACCTCAT 58.676 37.500 0.00 0.00 42.47 2.90
3972 4757 5.774690 TGGTCAAAGCTTGATAAACCTCATT 59.225 36.000 0.00 0.00 42.47 2.57
3973 4758 6.945435 TGGTCAAAGCTTGATAAACCTCATTA 59.055 34.615 0.00 0.00 42.47 1.90
3974 4759 7.615365 TGGTCAAAGCTTGATAAACCTCATTAT 59.385 33.333 0.00 0.00 42.47 1.28
3975 4760 8.470002 GGTCAAAGCTTGATAAACCTCATTATT 58.530 33.333 0.00 0.00 42.47 1.40
3976 4761 9.860898 GTCAAAGCTTGATAAACCTCATTATTT 57.139 29.630 0.00 0.00 42.47 1.40
3979 4764 8.707938 AAGCTTGATAAACCTCATTATTTTGC 57.292 30.769 0.00 0.00 0.00 3.68
3980 4765 7.267857 AGCTTGATAAACCTCATTATTTTGCC 58.732 34.615 0.00 0.00 0.00 4.52
3981 4766 7.124750 AGCTTGATAAACCTCATTATTTTGCCT 59.875 33.333 0.00 0.00 0.00 4.75
3982 4767 7.223387 GCTTGATAAACCTCATTATTTTGCCTG 59.777 37.037 0.00 0.00 0.00 4.85
3983 4768 7.111247 TGATAAACCTCATTATTTTGCCTGG 57.889 36.000 0.00 0.00 0.00 4.45
3984 4769 6.894654 TGATAAACCTCATTATTTTGCCTGGA 59.105 34.615 0.00 0.00 0.00 3.86
3985 4770 5.665916 AAACCTCATTATTTTGCCTGGAG 57.334 39.130 0.00 0.00 0.00 3.86
3986 4771 3.635591 ACCTCATTATTTTGCCTGGAGG 58.364 45.455 0.00 0.00 44.60 4.30
3987 4772 2.961062 CCTCATTATTTTGCCTGGAGGG 59.039 50.000 0.00 0.00 37.41 4.30
3988 4773 3.628257 CCTCATTATTTTGCCTGGAGGGT 60.628 47.826 0.00 0.00 37.41 4.34
3989 4774 4.386312 CCTCATTATTTTGCCTGGAGGGTA 60.386 45.833 0.00 0.00 37.41 3.69
3990 4775 5.388654 CTCATTATTTTGCCTGGAGGGTAT 58.611 41.667 0.00 0.00 37.43 2.73
3991 4776 5.776358 TCATTATTTTGCCTGGAGGGTATT 58.224 37.500 0.00 0.00 37.43 1.89
3992 4777 5.598005 TCATTATTTTGCCTGGAGGGTATTG 59.402 40.000 0.00 0.00 37.43 1.90
3993 4778 1.555967 TTTTGCCTGGAGGGTATTGC 58.444 50.000 0.00 0.00 37.43 3.56
3994 4779 0.704076 TTTGCCTGGAGGGTATTGCT 59.296 50.000 0.00 0.00 37.43 3.91
3995 4780 0.704076 TTGCCTGGAGGGTATTGCTT 59.296 50.000 0.00 0.00 37.43 3.91
3996 4781 0.704076 TGCCTGGAGGGTATTGCTTT 59.296 50.000 0.00 0.00 37.43 3.51
3997 4782 1.340991 TGCCTGGAGGGTATTGCTTTC 60.341 52.381 0.00 0.00 37.43 2.62
3998 4783 2.024306 GCCTGGAGGGTATTGCTTTCC 61.024 57.143 0.00 0.00 37.43 3.13
3999 4784 1.284785 CCTGGAGGGTATTGCTTTCCA 59.715 52.381 0.00 0.00 36.55 3.53
4000 4785 2.291540 CCTGGAGGGTATTGCTTTCCAA 60.292 50.000 0.00 0.00 37.48 3.53
4001 4786 3.430453 CTGGAGGGTATTGCTTTCCAAA 58.570 45.455 0.00 0.00 37.48 3.28
4002 4787 4.026052 CTGGAGGGTATTGCTTTCCAAAT 58.974 43.478 0.00 0.00 37.48 2.32
4003 4788 3.768757 TGGAGGGTATTGCTTTCCAAATG 59.231 43.478 0.00 0.00 36.92 2.32
4004 4789 4.023291 GGAGGGTATTGCTTTCCAAATGA 58.977 43.478 0.00 0.00 36.92 2.57
4005 4790 4.466015 GGAGGGTATTGCTTTCCAAATGAA 59.534 41.667 0.00 0.00 36.92 2.57
4006 4791 5.046663 GGAGGGTATTGCTTTCCAAATGAAA 60.047 40.000 0.00 0.00 40.64 2.69
4007 4792 6.352137 GGAGGGTATTGCTTTCCAAATGAAAT 60.352 38.462 0.00 0.00 41.96 2.17
4008 4793 6.408869 AGGGTATTGCTTTCCAAATGAAATG 58.591 36.000 0.00 0.00 41.96 2.32
4009 4794 5.065090 GGGTATTGCTTTCCAAATGAAATGC 59.935 40.000 0.00 0.00 41.96 3.56
4010 4795 5.065090 GGTATTGCTTTCCAAATGAAATGCC 59.935 40.000 0.00 0.00 41.96 4.40
4011 4796 3.766068 TGCTTTCCAAATGAAATGCCA 57.234 38.095 0.00 0.00 41.96 4.92
4012 4797 4.289238 TGCTTTCCAAATGAAATGCCAT 57.711 36.364 0.00 0.00 41.96 4.40
4013 4798 4.255301 TGCTTTCCAAATGAAATGCCATC 58.745 39.130 0.00 0.00 41.96 3.51
4086 5069 8.307483 GGTCTAGCTAGATATTCATTGCAACTA 58.693 37.037 25.74 0.00 34.39 2.24
4100 5083 9.761504 TTCATTGCAACTAAATTGAATTCAAGA 57.238 25.926 24.17 12.22 41.23 3.02
4101 5084 9.195411 TCATTGCAACTAAATTGAATTCAAGAC 57.805 29.630 24.17 9.05 41.23 3.01
4102 5085 9.199982 CATTGCAACTAAATTGAATTCAAGACT 57.800 29.630 24.17 13.93 41.23 3.24
4103 5086 8.578308 TTGCAACTAAATTGAATTCAAGACTG 57.422 30.769 24.17 16.41 41.23 3.51
4104 5087 7.715657 TGCAACTAAATTGAATTCAAGACTGT 58.284 30.769 24.17 16.95 41.23 3.55
4105 5088 8.196771 TGCAACTAAATTGAATTCAAGACTGTT 58.803 29.630 24.17 20.69 41.23 3.16
4106 5089 8.694394 GCAACTAAATTGAATTCAAGACTGTTC 58.306 33.333 24.17 15.09 41.23 3.18
4107 5090 9.956720 CAACTAAATTGAATTCAAGACTGTTCT 57.043 29.630 24.17 4.11 41.23 3.01
4109 5092 9.342308 ACTAAATTGAATTCAAGACTGTTCTCA 57.658 29.630 24.17 0.00 39.47 3.27
4110 5093 9.823098 CTAAATTGAATTCAAGACTGTTCTCAG 57.177 33.333 24.17 9.15 42.00 3.35
4111 5094 7.814264 AATTGAATTCAAGACTGTTCTCAGT 57.186 32.000 24.17 0.31 45.86 3.41
4112 5095 8.908786 AATTGAATTCAAGACTGTTCTCAGTA 57.091 30.769 24.17 0.00 44.58 2.74
4113 5096 8.908786 ATTGAATTCAAGACTGTTCTCAGTAA 57.091 30.769 24.17 0.00 44.58 2.24
4114 5097 9.512588 ATTGAATTCAAGACTGTTCTCAGTAAT 57.487 29.630 24.17 0.61 44.58 1.89
4151 5134 1.824852 ACCCCGAATTGAATTCAAGGC 59.175 47.619 24.17 17.09 39.47 4.35
4157 5140 4.337763 CGAATTGAATTCAAGGCGAGAAG 58.662 43.478 27.73 11.71 39.47 2.85
4183 5166 2.946329 TGTAGTTCAAGGCGCAAAAGAA 59.054 40.909 10.83 4.61 0.00 2.52
4237 5221 2.903798 TGGCTGCCTTTTGTTTTTCAG 58.096 42.857 21.03 0.00 0.00 3.02
4303 5287 8.839310 AATTCATAGTAGCCTAATGTGTGATC 57.161 34.615 0.00 0.00 0.00 2.92
4304 5288 7.603180 TTCATAGTAGCCTAATGTGTGATCT 57.397 36.000 0.00 0.00 0.00 2.75
4305 5289 7.603180 TCATAGTAGCCTAATGTGTGATCTT 57.397 36.000 0.00 0.00 0.00 2.40
4306 5290 8.023021 TCATAGTAGCCTAATGTGTGATCTTT 57.977 34.615 0.00 0.00 0.00 2.52
4307 5291 7.928167 TCATAGTAGCCTAATGTGTGATCTTTG 59.072 37.037 0.00 0.00 0.00 2.77
4308 5292 6.299805 AGTAGCCTAATGTGTGATCTTTGA 57.700 37.500 0.00 0.00 0.00 2.69
4309 5293 6.109359 AGTAGCCTAATGTGTGATCTTTGAC 58.891 40.000 0.00 0.00 0.00 3.18
4310 5294 4.265073 AGCCTAATGTGTGATCTTTGACC 58.735 43.478 0.00 0.00 0.00 4.02
4311 5295 3.378427 GCCTAATGTGTGATCTTTGACCC 59.622 47.826 0.00 0.00 0.00 4.46
4312 5296 3.947834 CCTAATGTGTGATCTTTGACCCC 59.052 47.826 0.00 0.00 0.00 4.95
4313 5297 3.814504 AATGTGTGATCTTTGACCCCT 57.185 42.857 0.00 0.00 0.00 4.79
4326 5310 0.605589 GACCCCTCCGAACCTTGTTG 60.606 60.000 0.00 0.00 0.00 3.33
4359 5343 5.542779 TCTTTTCTCACTGCTCCTTTCTAC 58.457 41.667 0.00 0.00 0.00 2.59
4368 5352 3.347216 TGCTCCTTTCTACCTCATTTGC 58.653 45.455 0.00 0.00 0.00 3.68
4444 5428 2.919043 GAAGGCCCCCACGATGAT 59.081 61.111 0.00 0.00 0.00 2.45
4456 5440 0.736636 ACGATGATGCCATTGTGCAG 59.263 50.000 0.00 0.00 45.93 4.41
4526 5510 7.851963 CACACCATGAATTTGATTGTTTTTCAC 59.148 33.333 0.00 0.00 0.00 3.18
4625 5609 7.666388 TCTCCGGGAATTCAAAAACTATTTGTA 59.334 33.333 7.93 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.608035 TTCTTTGGGCCGTCCATGAC 60.608 55.000 0.00 0.00 46.52 3.06
22 23 0.331278 ATTCTTTGGGCCGTCCATGA 59.669 50.000 0.00 0.00 46.52 3.07
23 24 0.457035 CATTCTTTGGGCCGTCCATG 59.543 55.000 0.00 0.00 46.52 3.66
24 25 0.039618 ACATTCTTTGGGCCGTCCAT 59.960 50.000 0.00 0.00 46.52 3.41
25 26 0.608035 GACATTCTTTGGGCCGTCCA 60.608 55.000 0.00 0.00 45.43 4.02
26 27 0.608035 TGACATTCTTTGGGCCGTCC 60.608 55.000 0.00 0.00 0.00 4.79
27 28 1.133025 CATGACATTCTTTGGGCCGTC 59.867 52.381 0.00 0.00 0.00 4.79
28 29 1.176527 CATGACATTCTTTGGGCCGT 58.823 50.000 0.00 0.00 0.00 5.68
29 30 0.179129 GCATGACATTCTTTGGGCCG 60.179 55.000 0.00 0.00 0.00 6.13
30 31 0.896923 TGCATGACATTCTTTGGGCC 59.103 50.000 0.00 0.00 0.00 5.80
31 32 1.738030 GCTGCATGACATTCTTTGGGC 60.738 52.381 0.00 0.00 0.00 5.36
32 33 1.822990 AGCTGCATGACATTCTTTGGG 59.177 47.619 1.02 0.00 0.00 4.12
33 34 2.876091 CAGCTGCATGACATTCTTTGG 58.124 47.619 0.00 0.00 0.00 3.28
34 35 2.259618 GCAGCTGCATGACATTCTTTG 58.740 47.619 33.36 0.00 41.59 2.77
35 36 1.135489 CGCAGCTGCATGACATTCTTT 60.135 47.619 36.03 0.00 42.21 2.52
36 37 0.450583 CGCAGCTGCATGACATTCTT 59.549 50.000 36.03 0.00 42.21 2.52
37 38 0.675837 ACGCAGCTGCATGACATTCT 60.676 50.000 36.03 3.03 42.21 2.40
38 39 0.247974 GACGCAGCTGCATGACATTC 60.248 55.000 36.03 16.51 42.21 2.67
39 40 0.675837 AGACGCAGCTGCATGACATT 60.676 50.000 36.03 12.57 42.21 2.71
40 41 1.078637 AGACGCAGCTGCATGACAT 60.079 52.632 36.03 15.03 42.21 3.06
41 42 1.739196 GAGACGCAGCTGCATGACA 60.739 57.895 36.03 0.00 42.21 3.58
42 43 2.459442 GGAGACGCAGCTGCATGAC 61.459 63.158 36.03 23.11 42.21 3.06
43 44 2.125391 GGAGACGCAGCTGCATGA 60.125 61.111 36.03 0.00 42.21 3.07
63 64 2.746277 CTTTTCGTCCTGGGCGGG 60.746 66.667 21.87 5.25 0.00 6.13
64 65 3.431725 GCTTTTCGTCCTGGGCGG 61.432 66.667 21.87 5.53 0.00 6.13
65 66 3.431725 GGCTTTTCGTCCTGGGCG 61.432 66.667 15.85 15.85 0.00 6.13
66 67 3.062466 GGGCTTTTCGTCCTGGGC 61.062 66.667 0.00 0.00 33.40 5.36
67 68 0.611896 AATGGGCTTTTCGTCCTGGG 60.612 55.000 0.00 0.00 38.58 4.45
68 69 1.256812 AAATGGGCTTTTCGTCCTGG 58.743 50.000 0.00 0.00 38.58 4.45
69 70 2.946564 GAAAATGGGCTTTTCGTCCTG 58.053 47.619 0.00 0.00 42.34 3.86
76 77 5.750352 ATCATGACAGAAAATGGGCTTTT 57.250 34.783 0.00 0.00 39.78 2.27
77 78 5.750352 AATCATGACAGAAAATGGGCTTT 57.250 34.783 0.00 0.00 0.00 3.51
78 79 5.750352 AAATCATGACAGAAAATGGGCTT 57.250 34.783 0.00 0.00 0.00 4.35
79 80 5.750352 AAAATCATGACAGAAAATGGGCT 57.250 34.783 0.00 0.00 0.00 5.19
99 100 5.013704 TGGGCTCCTACTTCTATGACAAAAA 59.986 40.000 0.00 0.00 0.00 1.94
100 101 4.534500 TGGGCTCCTACTTCTATGACAAAA 59.466 41.667 0.00 0.00 0.00 2.44
101 102 4.081087 GTGGGCTCCTACTTCTATGACAAA 60.081 45.833 0.00 0.00 0.00 2.83
102 103 3.451178 GTGGGCTCCTACTTCTATGACAA 59.549 47.826 0.00 0.00 0.00 3.18
103 104 3.031736 GTGGGCTCCTACTTCTATGACA 58.968 50.000 0.00 0.00 0.00 3.58
104 105 2.365941 GGTGGGCTCCTACTTCTATGAC 59.634 54.545 2.46 0.00 0.00 3.06
105 106 2.023404 TGGTGGGCTCCTACTTCTATGA 60.023 50.000 2.46 0.00 0.00 2.15
106 107 2.103263 GTGGTGGGCTCCTACTTCTATG 59.897 54.545 2.46 0.00 0.00 2.23
107 108 2.292918 TGTGGTGGGCTCCTACTTCTAT 60.293 50.000 2.46 0.00 0.00 1.98
108 109 1.078159 TGTGGTGGGCTCCTACTTCTA 59.922 52.381 2.46 0.00 0.00 2.10
109 110 0.178903 TGTGGTGGGCTCCTACTTCT 60.179 55.000 2.46 0.00 0.00 2.85
110 111 0.912486 ATGTGGTGGGCTCCTACTTC 59.088 55.000 2.46 0.00 0.00 3.01
111 112 0.912486 GATGTGGTGGGCTCCTACTT 59.088 55.000 2.46 0.00 0.00 2.24
112 113 0.043334 AGATGTGGTGGGCTCCTACT 59.957 55.000 2.46 0.00 0.00 2.57
113 114 1.789523 TAGATGTGGTGGGCTCCTAC 58.210 55.000 0.00 0.00 0.00 3.18
114 115 2.090775 TCATAGATGTGGTGGGCTCCTA 60.091 50.000 0.00 0.00 0.00 2.94
115 116 1.135094 CATAGATGTGGTGGGCTCCT 58.865 55.000 0.00 0.00 0.00 3.69
116 117 1.131638 TCATAGATGTGGTGGGCTCC 58.868 55.000 0.00 0.00 0.00 4.70
117 118 2.369860 TCATCATAGATGTGGTGGGCTC 59.630 50.000 6.86 0.00 0.00 4.70
118 119 2.411583 TCATCATAGATGTGGTGGGCT 58.588 47.619 6.86 0.00 0.00 5.19
119 120 2.936919 TCATCATAGATGTGGTGGGC 57.063 50.000 6.86 0.00 0.00 5.36
120 121 4.621510 CGGTATCATCATAGATGTGGTGGG 60.622 50.000 6.86 0.00 0.00 4.61
121 122 4.498241 CGGTATCATCATAGATGTGGTGG 58.502 47.826 6.86 0.00 0.00 4.61
122 123 4.498241 CCGGTATCATCATAGATGTGGTG 58.502 47.826 6.86 0.00 0.00 4.17
123 124 3.515502 CCCGGTATCATCATAGATGTGGT 59.484 47.826 0.00 0.00 0.00 4.16
124 125 3.515502 ACCCGGTATCATCATAGATGTGG 59.484 47.826 0.00 3.53 0.00 4.17
125 126 4.808414 ACCCGGTATCATCATAGATGTG 57.192 45.455 0.00 0.00 0.00 3.21
126 127 5.825593 AAACCCGGTATCATCATAGATGT 57.174 39.130 0.00 0.00 0.00 3.06
148 149 9.214957 ACACTTCTATGACGATAATTGTGAAAA 57.785 29.630 0.00 0.00 0.00 2.29
149 150 8.771920 ACACTTCTATGACGATAATTGTGAAA 57.228 30.769 0.00 0.00 0.00 2.69
150 151 8.032451 TGACACTTCTATGACGATAATTGTGAA 58.968 33.333 0.00 0.00 0.00 3.18
151 152 7.543756 TGACACTTCTATGACGATAATTGTGA 58.456 34.615 0.00 0.00 0.00 3.58
152 153 7.755582 TGACACTTCTATGACGATAATTGTG 57.244 36.000 0.00 0.00 0.00 3.33
159 160 9.014297 TCATACATATGACACTTCTATGACGAT 57.986 33.333 10.38 0.00 37.76 3.73
160 161 8.391075 TCATACATATGACACTTCTATGACGA 57.609 34.615 10.38 0.00 37.76 4.20
192 193 2.892784 TTTGGGCCGAACGAATTTTT 57.107 40.000 0.79 0.00 0.00 1.94
193 194 2.892784 TTTTGGGCCGAACGAATTTT 57.107 40.000 5.46 0.00 0.00 1.82
194 195 2.036604 ACATTTTGGGCCGAACGAATTT 59.963 40.909 5.46 0.00 0.00 1.82
195 196 1.616374 ACATTTTGGGCCGAACGAATT 59.384 42.857 5.46 0.00 0.00 2.17
196 197 1.201414 GACATTTTGGGCCGAACGAAT 59.799 47.619 5.46 0.00 0.00 3.34
197 198 0.594110 GACATTTTGGGCCGAACGAA 59.406 50.000 5.46 0.00 0.00 3.85
198 199 0.535328 TGACATTTTGGGCCGAACGA 60.535 50.000 5.46 0.00 0.00 3.85
199 200 0.386731 GTGACATTTTGGGCCGAACG 60.387 55.000 5.46 3.01 0.00 3.95
200 201 0.386731 CGTGACATTTTGGGCCGAAC 60.387 55.000 5.46 0.00 0.00 3.95
201 202 1.519751 CCGTGACATTTTGGGCCGAA 61.520 55.000 0.79 0.79 0.00 4.30
202 203 1.969064 CCGTGACATTTTGGGCCGA 60.969 57.895 0.00 0.00 0.00 5.54
203 204 1.312371 ATCCGTGACATTTTGGGCCG 61.312 55.000 0.00 0.00 0.00 6.13
204 205 0.173255 CATCCGTGACATTTTGGGCC 59.827 55.000 0.00 0.00 0.00 5.80
205 206 0.887933 ACATCCGTGACATTTTGGGC 59.112 50.000 0.00 0.00 0.00 5.36
206 207 1.885887 ACACATCCGTGACATTTTGGG 59.114 47.619 0.00 0.00 46.80 4.12
207 208 2.813754 AGACACATCCGTGACATTTTGG 59.186 45.455 0.00 0.00 46.80 3.28
208 209 4.488126 AAGACACATCCGTGACATTTTG 57.512 40.909 0.00 0.00 46.80 2.44
209 210 5.514274 AAAAGACACATCCGTGACATTTT 57.486 34.783 0.00 1.58 46.80 1.82
210 211 5.514274 AAAAAGACACATCCGTGACATTT 57.486 34.783 0.00 0.00 46.80 2.32
230 231 2.762745 GACGAGGAGGCACTACAAAAA 58.237 47.619 0.00 0.00 46.07 1.94
231 232 1.336517 CGACGAGGAGGCACTACAAAA 60.337 52.381 0.00 0.00 46.07 2.44
232 233 0.242825 CGACGAGGAGGCACTACAAA 59.757 55.000 0.00 0.00 46.07 2.83
233 234 1.592400 CCGACGAGGAGGCACTACAA 61.592 60.000 0.00 0.00 46.07 2.41
234 235 2.044555 CCGACGAGGAGGCACTACA 61.045 63.158 0.00 0.00 46.07 2.74
235 236 2.799371 CCGACGAGGAGGCACTAC 59.201 66.667 0.00 0.00 41.55 2.73
302 303 1.302271 GAGACCCGGCTCCGTTTTT 60.302 57.895 7.59 0.00 37.81 1.94
391 392 1.445095 CTCGCCATCTTCAGGGAGG 59.555 63.158 0.00 0.00 38.89 4.30
666 676 4.083217 ACATGTTCGCGGCTTTTTACATAA 60.083 37.500 6.13 0.00 0.00 1.90
712 722 5.927954 TCGGCTAAACACGTCTAAATTTT 57.072 34.783 0.00 0.00 0.00 1.82
823 833 3.959991 GAGGCGAGTTGGTCCCAGC 62.960 68.421 0.00 0.00 0.00 4.85
824 834 2.266055 GAGGCGAGTTGGTCCCAG 59.734 66.667 0.00 0.00 0.00 4.45
825 835 3.319198 GGAGGCGAGTTGGTCCCA 61.319 66.667 0.00 0.00 0.00 4.37
826 836 3.316573 CTGGAGGCGAGTTGGTCCC 62.317 68.421 0.00 0.00 0.00 4.46
827 837 2.266055 CTGGAGGCGAGTTGGTCC 59.734 66.667 0.00 0.00 0.00 4.46
828 838 1.374758 CACTGGAGGCGAGTTGGTC 60.375 63.158 0.00 0.00 0.00 4.02
859 869 1.218047 CCGTTTGGAGATGAGCCGA 59.782 57.895 0.00 0.00 37.49 5.54
873 883 1.310216 GGGTGCCTAAAATCGCCGTT 61.310 55.000 0.00 0.00 33.83 4.44
919 929 0.676151 GCAGGGAGCTCCAAGTTCAG 60.676 60.000 33.29 13.84 41.15 3.02
920 930 1.376466 GCAGGGAGCTCCAAGTTCA 59.624 57.895 33.29 0.00 41.15 3.18
921 931 0.676151 CTGCAGGGAGCTCCAAGTTC 60.676 60.000 33.29 16.08 45.94 3.01
922 932 1.130054 TCTGCAGGGAGCTCCAAGTT 61.130 55.000 33.29 13.32 45.94 2.66
923 933 1.130054 TTCTGCAGGGAGCTCCAAGT 61.130 55.000 33.29 15.12 45.94 3.16
924 934 0.037303 TTTCTGCAGGGAGCTCCAAG 59.963 55.000 33.29 24.54 45.94 3.61
925 935 0.700564 ATTTCTGCAGGGAGCTCCAA 59.299 50.000 33.29 17.66 45.94 3.53
926 936 1.487976 CTATTTCTGCAGGGAGCTCCA 59.512 52.381 33.29 12.75 45.94 3.86
927 937 1.765314 TCTATTTCTGCAGGGAGCTCC 59.235 52.381 25.59 25.59 45.94 4.70
928 938 2.224257 CCTCTATTTCTGCAGGGAGCTC 60.224 54.545 15.13 4.71 45.94 4.09
929 939 1.767681 CCTCTATTTCTGCAGGGAGCT 59.232 52.381 15.13 0.00 45.94 4.09
930 940 1.488393 ACCTCTATTTCTGCAGGGAGC 59.512 52.381 15.13 0.00 45.96 4.70
931 941 3.922171 AACCTCTATTTCTGCAGGGAG 57.078 47.619 15.13 12.82 0.00 4.30
932 942 4.080526 GGTTAACCTCTATTTCTGCAGGGA 60.081 45.833 17.83 2.85 0.00 4.20
933 943 4.200092 GGTTAACCTCTATTTCTGCAGGG 58.800 47.826 17.83 7.65 0.00 4.45
934 944 4.200092 GGGTTAACCTCTATTTCTGCAGG 58.800 47.826 23.69 0.00 35.85 4.85
935 945 4.843728 TGGGTTAACCTCTATTTCTGCAG 58.156 43.478 23.69 7.63 41.11 4.41
936 946 4.919774 TGGGTTAACCTCTATTTCTGCA 57.080 40.909 23.69 6.69 41.11 4.41
937 947 5.437060 TGATGGGTTAACCTCTATTTCTGC 58.563 41.667 23.69 4.09 41.11 4.26
938 948 6.653989 ACTGATGGGTTAACCTCTATTTCTG 58.346 40.000 23.69 15.54 41.11 3.02
939 949 6.126739 GGACTGATGGGTTAACCTCTATTTCT 60.127 42.308 23.69 0.78 41.11 2.52
940 950 6.056236 GGACTGATGGGTTAACCTCTATTTC 58.944 44.000 23.69 13.28 41.11 2.17
941 951 5.731678 AGGACTGATGGGTTAACCTCTATTT 59.268 40.000 23.69 5.40 41.11 1.40
942 952 5.289510 AGGACTGATGGGTTAACCTCTATT 58.710 41.667 23.69 4.89 41.11 1.73
943 953 4.897051 AGGACTGATGGGTTAACCTCTAT 58.103 43.478 23.69 15.26 41.11 1.98
944 954 4.348020 AGGACTGATGGGTTAACCTCTA 57.652 45.455 23.69 11.31 41.11 2.43
945 955 3.207044 AGGACTGATGGGTTAACCTCT 57.793 47.619 23.69 11.51 41.11 3.69
946 956 4.010349 CAAAGGACTGATGGGTTAACCTC 58.990 47.826 23.69 14.85 41.11 3.85
947 957 3.245264 CCAAAGGACTGATGGGTTAACCT 60.245 47.826 23.69 5.26 41.11 3.50
948 958 3.089284 CCAAAGGACTGATGGGTTAACC 58.911 50.000 16.85 16.85 40.81 2.85
949 959 4.010349 CTCCAAAGGACTGATGGGTTAAC 58.990 47.826 0.00 0.00 34.89 2.01
950 960 3.913799 TCTCCAAAGGACTGATGGGTTAA 59.086 43.478 5.02 0.00 34.89 2.01
951 961 3.519510 CTCTCCAAAGGACTGATGGGTTA 59.480 47.826 5.02 0.00 34.89 2.85
952 962 2.307098 CTCTCCAAAGGACTGATGGGTT 59.693 50.000 5.02 0.00 34.89 4.11
953 963 1.912043 CTCTCCAAAGGACTGATGGGT 59.088 52.381 5.02 0.00 34.89 4.51
954 964 1.211457 CCTCTCCAAAGGACTGATGGG 59.789 57.143 5.02 0.00 38.87 4.00
955 965 2.170187 CTCCTCTCCAAAGGACTGATGG 59.830 54.545 0.00 0.00 40.60 3.51
956 966 2.419851 GCTCCTCTCCAAAGGACTGATG 60.420 54.545 0.00 0.00 40.60 3.07
957 967 1.836802 GCTCCTCTCCAAAGGACTGAT 59.163 52.381 0.00 0.00 40.60 2.90
958 968 1.270907 GCTCCTCTCCAAAGGACTGA 58.729 55.000 0.00 0.00 40.60 3.41
959 969 0.979665 TGCTCCTCTCCAAAGGACTG 59.020 55.000 0.00 0.00 40.60 3.51
960 970 1.203237 TCTGCTCCTCTCCAAAGGACT 60.203 52.381 0.00 0.00 40.60 3.85
961 971 1.206849 CTCTGCTCCTCTCCAAAGGAC 59.793 57.143 0.00 0.00 40.60 3.85
962 972 1.203237 ACTCTGCTCCTCTCCAAAGGA 60.203 52.381 0.00 0.00 43.30 3.36
963 973 1.066286 CACTCTGCTCCTCTCCAAAGG 60.066 57.143 0.00 0.00 37.81 3.11
964 974 1.675415 GCACTCTGCTCCTCTCCAAAG 60.675 57.143 0.00 0.00 40.96 2.77
965 975 0.322975 GCACTCTGCTCCTCTCCAAA 59.677 55.000 0.00 0.00 40.96 3.28
1210 1220 3.322466 CCGTTCTCCTGCCAGGGT 61.322 66.667 11.68 0.00 35.59 4.34
1320 1330 3.484407 CCATCCAAGAAGAAGCCATAGG 58.516 50.000 0.00 0.00 0.00 2.57
1350 1360 1.002134 CCCCAAGCACGGACAGAAT 60.002 57.895 0.00 0.00 0.00 2.40
1351 1361 2.429930 CCCCAAGCACGGACAGAA 59.570 61.111 0.00 0.00 0.00 3.02
1352 1362 3.636231 CCCCCAAGCACGGACAGA 61.636 66.667 0.00 0.00 0.00 3.41
1353 1363 3.190738 TTCCCCCAAGCACGGACAG 62.191 63.158 0.00 0.00 0.00 3.51
1354 1364 3.172106 TTCCCCCAAGCACGGACA 61.172 61.111 0.00 0.00 0.00 4.02
1356 1366 2.852075 ACTTCCCCCAAGCACGGA 60.852 61.111 0.00 0.00 35.17 4.69
1357 1367 2.672996 CACTTCCCCCAAGCACGG 60.673 66.667 0.00 0.00 35.17 4.94
1358 1368 1.966451 GTCACTTCCCCCAAGCACG 60.966 63.158 0.00 0.00 35.17 5.34
1359 1369 1.603739 GGTCACTTCCCCCAAGCAC 60.604 63.158 0.00 0.00 35.17 4.40
1377 1390 4.214383 CCTGCGCGCACAGAATCG 62.214 66.667 33.09 18.74 40.25 3.34
1438 1451 1.513586 CCGTGAGAACGGCGAGTAC 60.514 63.158 16.62 4.19 46.76 2.73
1519 1532 2.500098 ACAGATTAAGCCGCTCACCTTA 59.500 45.455 0.00 0.00 0.00 2.69
1555 1742 2.830923 TCATGCCCAAACGAATCCAAAT 59.169 40.909 0.00 0.00 0.00 2.32
1639 1834 9.859427 CAAATTACCACTGTTATCATCATGTTT 57.141 29.630 0.00 0.00 0.00 2.83
1734 1929 1.718757 GATGGGACTTCCGCATGCAC 61.719 60.000 19.57 1.24 46.77 4.57
1825 2021 9.897744 CTTCTCTGAAATTGTGCACTTTATTTA 57.102 29.630 19.41 4.27 0.00 1.40
1875 2071 7.387673 TCACAGTACAATTGTTCTACAGAATGG 59.612 37.037 17.78 5.05 43.62 3.16
1893 2089 3.889196 TGCAAATTCCGTTCACAGTAC 57.111 42.857 0.00 0.00 0.00 2.73
1919 2448 8.685838 AGTTTTACAGGTCTTTATTAGTGCAA 57.314 30.769 0.00 0.00 0.00 4.08
1966 2495 0.248621 ACAACGCTGCTTTCAGTTGC 60.249 50.000 14.47 0.00 45.42 4.17
1981 2510 3.637998 TCACGACAACTAGGAGACAAC 57.362 47.619 0.00 0.00 0.00 3.32
2019 2556 5.188434 TCTCAAAGATCATGATGTTCCACC 58.812 41.667 17.59 0.00 0.00 4.61
2153 2690 4.215908 AGCGGACTAGATGGTCATAAGAA 58.784 43.478 0.00 0.00 37.91 2.52
2154 2691 3.821600 GAGCGGACTAGATGGTCATAAGA 59.178 47.826 0.00 0.00 37.91 2.10
2155 2692 3.570125 TGAGCGGACTAGATGGTCATAAG 59.430 47.826 0.00 0.00 37.91 1.73
2158 2695 2.073252 TGAGCGGACTAGATGGTCAT 57.927 50.000 0.00 0.00 37.91 3.06
2225 2762 1.001746 AGCAGCTCATATGATGGTCCG 59.998 52.381 5.72 0.00 27.08 4.79
2241 2778 3.405831 TCACCTTCTCATGTGAAAGCAG 58.594 45.455 11.11 0.26 38.48 4.24
2402 2947 8.563123 AGACCATCATTCAATATGCTAATGAG 57.437 34.615 11.22 4.46 41.50 2.90
2515 3060 4.882842 TTGATGCACTGACTAACACCTA 57.117 40.909 0.00 0.00 0.00 3.08
2544 3089 6.964464 TCACTAAATGGAATAGCTGGGTAAA 58.036 36.000 0.00 0.00 0.00 2.01
2545 3090 6.385759 TCTCACTAAATGGAATAGCTGGGTAA 59.614 38.462 0.00 0.00 0.00 2.85
2897 3448 4.659111 TGAAACTCCACGTCTGTAGAAA 57.341 40.909 0.00 0.00 0.00 2.52
3075 3645 6.207025 CAGCCTGTCGGTTTATACTCTATAGT 59.793 42.308 0.00 0.00 39.91 2.12
3667 4241 0.107897 TGCGTCAGGTCACACAACTT 60.108 50.000 0.00 0.00 0.00 2.66
3845 4467 4.935808 GTGGATGTCTTTTCTCACCGTTAT 59.064 41.667 0.00 0.00 0.00 1.89
3967 4752 3.635591 ACCCTCCAGGCAAAATAATGAG 58.364 45.455 0.00 0.00 40.58 2.90
3968 4753 3.756082 ACCCTCCAGGCAAAATAATGA 57.244 42.857 0.00 0.00 40.58 2.57
3969 4754 5.739935 GCAATACCCTCCAGGCAAAATAATG 60.740 44.000 0.00 0.00 40.58 1.90
3970 4755 4.344968 GCAATACCCTCCAGGCAAAATAAT 59.655 41.667 0.00 0.00 40.58 1.28
3971 4756 3.704061 GCAATACCCTCCAGGCAAAATAA 59.296 43.478 0.00 0.00 40.58 1.40
3972 4757 3.052944 AGCAATACCCTCCAGGCAAAATA 60.053 43.478 0.00 0.00 40.58 1.40
3973 4758 2.110578 GCAATACCCTCCAGGCAAAAT 58.889 47.619 0.00 0.00 40.58 1.82
3974 4759 1.077005 AGCAATACCCTCCAGGCAAAA 59.923 47.619 0.00 0.00 40.58 2.44
3975 4760 0.704076 AGCAATACCCTCCAGGCAAA 59.296 50.000 0.00 0.00 40.58 3.68
3976 4761 0.704076 AAGCAATACCCTCCAGGCAA 59.296 50.000 0.00 0.00 40.58 4.52
3977 4762 0.704076 AAAGCAATACCCTCCAGGCA 59.296 50.000 0.00 0.00 40.58 4.75
3978 4763 1.393603 GAAAGCAATACCCTCCAGGC 58.606 55.000 0.00 0.00 40.58 4.85
3979 4764 1.284785 TGGAAAGCAATACCCTCCAGG 59.715 52.381 0.00 0.00 43.78 4.45
3980 4765 2.806945 TGGAAAGCAATACCCTCCAG 57.193 50.000 0.00 0.00 32.42 3.86
3981 4766 3.534357 TTTGGAAAGCAATACCCTCCA 57.466 42.857 0.00 0.00 34.36 3.86
3982 4767 4.023291 TCATTTGGAAAGCAATACCCTCC 58.977 43.478 0.00 0.00 0.00 4.30
3983 4768 5.659440 TTCATTTGGAAAGCAATACCCTC 57.341 39.130 0.00 0.00 30.98 4.30
3995 4780 3.523606 CCGATGGCATTTCATTTGGAA 57.476 42.857 0.00 0.00 0.00 3.53
4009 4794 1.243342 TGCTTTGTTGAGGCCGATGG 61.243 55.000 0.00 0.00 0.00 3.51
4010 4795 0.169672 CTGCTTTGTTGAGGCCGATG 59.830 55.000 0.00 0.00 0.00 3.84
4011 4796 0.036732 TCTGCTTTGTTGAGGCCGAT 59.963 50.000 0.00 0.00 0.00 4.18
4012 4797 0.884704 GTCTGCTTTGTTGAGGCCGA 60.885 55.000 0.00 0.00 0.00 5.54
4013 4798 1.165907 TGTCTGCTTTGTTGAGGCCG 61.166 55.000 0.00 0.00 0.00 6.13
4124 5107 8.984481 CTTGAATTCAATTCGGGGTCTACCCA 62.984 46.154 20.76 0.00 46.99 4.51
4125 5108 6.661613 CTTGAATTCAATTCGGGGTCTACCC 61.662 48.000 20.76 9.90 44.92 3.69
4126 5109 3.881220 TGAATTCAATTCGGGGTCTACC 58.119 45.455 5.45 0.00 42.15 3.18
4127 5110 4.335594 CCTTGAATTCAATTCGGGGTCTAC 59.664 45.833 20.76 0.00 42.15 2.59
4128 5111 4.523083 CCTTGAATTCAATTCGGGGTCTA 58.477 43.478 20.76 0.00 42.15 2.59
4129 5112 3.356290 CCTTGAATTCAATTCGGGGTCT 58.644 45.455 20.76 0.00 42.15 3.85
4183 5166 5.072193 TGTGCACTCTCCATGGTGATATATT 59.928 40.000 19.41 0.00 35.69 1.28
4237 5221 6.651225 ACCAAAGAGACAGATAAAGTACAAGC 59.349 38.462 0.00 0.00 0.00 4.01
4285 5269 6.109359 GTCAAAGATCACACATTAGGCTACT 58.891 40.000 0.00 0.00 0.00 2.57
4293 5277 3.562176 GGAGGGGTCAAAGATCACACATT 60.562 47.826 0.00 0.00 0.00 2.71
4294 5278 2.025887 GGAGGGGTCAAAGATCACACAT 60.026 50.000 0.00 0.00 0.00 3.21
4295 5279 1.351017 GGAGGGGTCAAAGATCACACA 59.649 52.381 0.00 0.00 0.00 3.72
4296 5280 1.676014 CGGAGGGGTCAAAGATCACAC 60.676 57.143 0.00 0.00 0.00 3.82
4297 5281 0.613260 CGGAGGGGTCAAAGATCACA 59.387 55.000 0.00 0.00 0.00 3.58
4298 5282 0.902531 TCGGAGGGGTCAAAGATCAC 59.097 55.000 0.00 0.00 0.00 3.06
4299 5283 1.278127 GTTCGGAGGGGTCAAAGATCA 59.722 52.381 0.00 0.00 0.00 2.92
4300 5284 1.407025 GGTTCGGAGGGGTCAAAGATC 60.407 57.143 0.00 0.00 0.00 2.75
4301 5285 0.618981 GGTTCGGAGGGGTCAAAGAT 59.381 55.000 0.00 0.00 0.00 2.40
4302 5286 0.473117 AGGTTCGGAGGGGTCAAAGA 60.473 55.000 0.00 0.00 0.00 2.52
4303 5287 0.400594 AAGGTTCGGAGGGGTCAAAG 59.599 55.000 0.00 0.00 0.00 2.77
4304 5288 0.109723 CAAGGTTCGGAGGGGTCAAA 59.890 55.000 0.00 0.00 0.00 2.69
4305 5289 1.057851 ACAAGGTTCGGAGGGGTCAA 61.058 55.000 0.00 0.00 0.00 3.18
4306 5290 1.057851 AACAAGGTTCGGAGGGGTCA 61.058 55.000 0.00 0.00 0.00 4.02
4307 5291 0.605589 CAACAAGGTTCGGAGGGGTC 60.606 60.000 0.00 0.00 0.00 4.46
4308 5292 1.350310 ACAACAAGGTTCGGAGGGGT 61.350 55.000 0.00 0.00 0.00 4.95
4309 5293 0.179001 AACAACAAGGTTCGGAGGGG 60.179 55.000 0.00 0.00 0.00 4.79
4310 5294 1.687563 AAACAACAAGGTTCGGAGGG 58.312 50.000 0.00 0.00 0.00 4.30
4311 5295 3.119280 ACAAAAACAACAAGGTTCGGAGG 60.119 43.478 0.00 0.00 0.00 4.30
4312 5296 4.104696 ACAAAAACAACAAGGTTCGGAG 57.895 40.909 0.00 0.00 0.00 4.63
4313 5297 4.522722 AACAAAAACAACAAGGTTCGGA 57.477 36.364 0.00 0.00 0.00 4.55
4326 5310 7.351414 AGCAGTGAGAAAAGAAAACAAAAAC 57.649 32.000 0.00 0.00 0.00 2.43
4368 5352 3.947910 AATGGGTTCTGACTTGCATTG 57.052 42.857 0.00 0.00 0.00 2.82
4379 5363 6.842280 ACCAAACTTAACCTTAAATGGGTTCT 59.158 34.615 1.13 0.00 44.77 3.01
4444 5428 2.340809 GCAAGCTGCACAATGGCA 59.659 55.556 1.02 0.00 44.26 4.92
4456 5440 0.462581 TCATCGTCTCCATGGCAAGC 60.463 55.000 6.96 0.00 0.00 4.01
4459 5443 1.210234 ACATTCATCGTCTCCATGGCA 59.790 47.619 6.96 0.00 0.00 4.92
4602 5586 8.819643 TTTACAAATAGTTTTTGAATTCCCGG 57.180 30.769 12.29 0.00 33.83 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.