Multiple sequence alignment - TraesCS2D01G069600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G069600 chr2D 100.000 5711 0 0 1 5711 29176773 29182483 0.000000e+00 10547.0
1 TraesCS2D01G069600 chr2D 100.000 2745 0 0 6127 8871 29182899 29185643 0.000000e+00 5070.0
2 TraesCS2D01G069600 chr2D 90.198 1061 89 10 6229 7284 18252474 18251424 0.000000e+00 1369.0
3 TraesCS2D01G069600 chr2D 90.038 1064 88 12 6229 7284 82881108 82882161 0.000000e+00 1362.0
4 TraesCS2D01G069600 chr2D 88.827 179 17 2 5011 5188 632423751 632423575 5.390000e-52 217.0
5 TraesCS2D01G069600 chr2A 93.064 2898 142 27 2051 4912 31164980 31167854 0.000000e+00 4183.0
6 TraesCS2D01G069600 chr2A 91.309 2025 82 31 1 1968 31162957 31164944 0.000000e+00 2678.0
7 TraesCS2D01G069600 chr2A 82.762 2889 369 81 2108 4914 31173647 31176488 0.000000e+00 2457.0
8 TraesCS2D01G069600 chr2A 85.535 1113 74 31 7282 8341 31176865 31177943 0.000000e+00 1083.0
9 TraesCS2D01G069600 chr2A 84.457 1023 66 27 7307 8270 31168231 31169219 0.000000e+00 922.0
10 TraesCS2D01G069600 chr2A 77.568 954 160 41 908 1829 31172654 31173585 2.190000e-145 527.0
11 TraesCS2D01G069600 chr2A 93.103 58 1 1 4958 5015 31176690 31176744 2.050000e-11 82.4
12 TraesCS2D01G069600 chr2B 89.262 2915 197 65 2058 4914 47457321 47454465 0.000000e+00 3542.0
13 TraesCS2D01G069600 chr2B 86.383 1902 128 49 132 1968 47459460 47457625 0.000000e+00 1956.0
14 TraesCS2D01G069600 chr2B 85.743 1964 139 55 1 1894 47174541 47176433 0.000000e+00 1945.0
15 TraesCS2D01G069600 chr2B 83.948 2062 253 39 2543 4577 47177992 47180002 0.000000e+00 1903.0
16 TraesCS2D01G069600 chr2B 85.087 1321 169 19 3390 4702 47428076 47426776 0.000000e+00 1323.0
17 TraesCS2D01G069600 chr2B 83.226 775 80 19 7590 8334 47181158 47181912 0.000000e+00 665.0
18 TraesCS2D01G069600 chr2B 79.913 921 120 41 2109 2976 47429994 47429086 4.550000e-172 616.0
19 TraesCS2D01G069600 chr2B 83.715 393 45 7 7967 8341 47441835 47441444 3.940000e-93 353.0
20 TraesCS2D01G069600 chr2B 91.129 248 16 2 7288 7535 47454104 47453863 1.850000e-86 331.0
21 TraesCS2D01G069600 chr2B 81.752 274 28 12 8506 8772 47425098 47424840 9.020000e-50 209.0
22 TraesCS2D01G069600 chr2B 86.441 177 13 5 5372 5537 673066206 673066382 5.470000e-42 183.0
23 TraesCS2D01G069600 chr2B 91.597 119 9 1 8223 8341 47425273 47425156 7.130000e-36 163.0
24 TraesCS2D01G069600 chr2B 90.000 90 9 0 2108 2197 47176437 47176526 5.630000e-22 117.0
25 TraesCS2D01G069600 chr2B 82.569 109 11 8 5446 5551 68716371 68716268 1.230000e-13 89.8
26 TraesCS2D01G069600 chr2B 82.569 109 11 8 5446 5551 68791394 68791291 1.230000e-13 89.8
27 TraesCS2D01G069600 chr2B 91.379 58 2 1 4958 5015 47454279 47454225 9.550000e-10 76.8
28 TraesCS2D01G069600 chr7A 93.707 1160 57 8 6127 7286 61807053 61808196 0.000000e+00 1724.0
29 TraesCS2D01G069600 chr7A 88.281 128 11 4 2002 2127 691723698 691723823 5.550000e-32 150.0
30 TraesCS2D01G069600 chr7A 76.604 265 56 4 1463 1724 634874109 634874370 3.340000e-29 141.0
31 TraesCS2D01G069600 chr7A 92.105 76 4 2 1892 1967 379030034 379029961 1.220000e-18 106.0
32 TraesCS2D01G069600 chr4B 93.192 1131 61 11 6130 7257 273667930 273666813 0.000000e+00 1648.0
33 TraesCS2D01G069600 chr4B 92.927 1131 64 11 6130 7257 273661143 273660026 0.000000e+00 1631.0
34 TraesCS2D01G069600 chr4B 92.485 1131 68 12 6130 7257 273654350 273653234 0.000000e+00 1602.0
35 TraesCS2D01G069600 chr4B 89.130 138 15 0 5574 5711 273661328 273661191 1.180000e-38 172.0
36 TraesCS2D01G069600 chr4B 88.889 117 9 4 2008 2122 344463402 344463288 3.340000e-29 141.0
37 TraesCS2D01G069600 chr4B 94.366 71 4 0 1902 1972 366928664 366928594 9.420000e-20 110.0
38 TraesCS2D01G069600 chr4B 95.588 68 3 0 1901 1968 372049003 372048936 9.420000e-20 110.0
39 TraesCS2D01G069600 chr7B 91.529 1086 79 9 6204 7285 21257049 21258125 0.000000e+00 1483.0
40 TraesCS2D01G069600 chr7B 91.060 1085 80 14 6204 7281 91131628 91132702 0.000000e+00 1450.0
41 TraesCS2D01G069600 chr7B 91.071 168 12 2 5013 5179 171995518 171995353 3.220000e-54 224.0
42 TraesCS2D01G069600 chr7B 92.035 113 7 2 2002 2112 11441194 11441306 3.320000e-34 158.0
43 TraesCS2D01G069600 chr7B 93.458 107 5 2 2008 2112 650609035 650608929 3.320000e-34 158.0
44 TraesCS2D01G069600 chr7B 70.821 682 170 22 1061 1727 593259516 593260183 7.230000e-26 130.0
45 TraesCS2D01G069600 chr7B 75.090 277 58 7 1463 1735 593635565 593635834 1.560000e-22 119.0
46 TraesCS2D01G069600 chr7B 95.714 70 3 0 1899 1968 650608928 650608997 7.280000e-21 113.0
47 TraesCS2D01G069600 chr7B 93.243 74 5 0 1897 1970 443741392 443741465 9.420000e-20 110.0
48 TraesCS2D01G069600 chr7B 70.103 679 175 26 1060 1724 593401564 593402228 4.380000e-18 104.0
49 TraesCS2D01G069600 chr4A 91.043 1083 84 9 6206 7285 582847657 582846585 0.000000e+00 1450.0
50 TraesCS2D01G069600 chr4A 73.819 783 185 17 2752 3521 733819819 733820594 8.710000e-75 292.0
51 TraesCS2D01G069600 chr4A 91.743 109 7 2 2008 2114 37306970 37306862 5.550000e-32 150.0
52 TraesCS2D01G069600 chr4A 91.071 112 8 2 2008 2117 614112420 614112309 5.550000e-32 150.0
53 TraesCS2D01G069600 chr4A 72.128 531 124 17 1226 1745 740150784 740150267 1.200000e-28 139.0
54 TraesCS2D01G069600 chr4A 95.714 70 3 0 1899 1968 544034696 544034765 7.280000e-21 113.0
55 TraesCS2D01G069600 chr4A 82.727 110 19 0 8366 8475 449406672 449406781 2.040000e-16 99.0
56 TraesCS2D01G069600 chr6B 74.711 1993 400 77 2718 4669 114346 112417 0.000000e+00 793.0
57 TraesCS2D01G069600 chr6B 73.846 1950 431 53 2741 4668 3724472 3726364 0.000000e+00 702.0
58 TraesCS2D01G069600 chr6B 89.831 177 13 5 5011 5186 695325487 695325315 1.160000e-53 222.0
59 TraesCS2D01G069600 chr6B 91.139 79 4 2 1892 1968 196962364 196962441 4.380000e-18 104.0
60 TraesCS2D01G069600 chr6D 76.130 1261 231 44 2703 3944 2294264 2293055 1.650000e-166 597.0
61 TraesCS2D01G069600 chr6D 91.667 120 8 2 2002 2119 21052081 21051962 1.980000e-36 165.0
62 TraesCS2D01G069600 chr6D 95.522 67 3 0 1902 1968 141446536 141446470 3.390000e-19 108.0
63 TraesCS2D01G069600 chr6D 93.056 72 5 0 1897 1968 21051966 21052037 1.220000e-18 106.0
64 TraesCS2D01G069600 chr6D 91.892 74 6 0 1895 1968 363384204 363384277 4.380000e-18 104.0
65 TraesCS2D01G069600 chr7D 85.124 363 29 11 5374 5711 104729238 104728876 1.830000e-91 348.0
66 TraesCS2D01G069600 chr7D 91.228 114 7 3 2001 2111 55155369 55155256 1.540000e-32 152.0
67 TraesCS2D01G069600 chr7D 70.886 711 182 22 1031 1727 549294429 549295128 9.280000e-30 143.0
68 TraesCS2D01G069600 chr7D 74.340 265 63 5 1466 1727 549306463 549306201 3.390000e-19 108.0
69 TraesCS2D01G069600 chr5A 93.714 175 10 1 6129 6302 639096406 639096580 2.460000e-65 261.0
70 TraesCS2D01G069600 chr5A 88.235 187 17 4 4999 5184 369127490 369127672 1.500000e-52 219.0
71 TraesCS2D01G069600 chr5A 92.000 100 8 0 5604 5703 639096249 639096348 3.340000e-29 141.0
72 TraesCS2D01G069600 chr5A 91.026 78 7 0 1895 1972 136396771 136396848 1.220000e-18 106.0
73 TraesCS2D01G069600 chr1D 91.071 168 13 2 5014 5180 399189325 399189159 8.960000e-55 226.0
74 TraesCS2D01G069600 chr1D 90.643 171 13 2 5010 5179 34006726 34006558 3.220000e-54 224.0
75 TraesCS2D01G069600 chr1D 90.230 174 11 6 5012 5183 125832356 125832187 1.160000e-53 222.0
76 TraesCS2D01G069600 chr1D 90.435 115 9 2 2002 2114 249557229 249557343 5.550000e-32 150.0
77 TraesCS2D01G069600 chr1D 90.351 114 9 2 2002 2113 118824161 118824274 2.000000e-31 148.0
78 TraesCS2D01G069600 chr1D 90.991 111 8 2 2002 2110 338937263 338937373 2.000000e-31 148.0
79 TraesCS2D01G069600 chr1D 93.151 73 3 1 1902 1972 27853507 27853579 1.220000e-18 106.0
80 TraesCS2D01G069600 chr1D 91.892 74 6 0 1895 1968 415400075 415400148 4.380000e-18 104.0
81 TraesCS2D01G069600 chr1D 91.781 73 6 0 1896 1968 324412395 324412323 1.580000e-17 102.0
82 TraesCS2D01G069600 chr1D 91.892 74 5 1 1895 1968 408189810 408189738 1.580000e-17 102.0
83 TraesCS2D01G069600 chr3B 90.230 174 13 3 5011 5183 592649970 592650140 3.220000e-54 224.0
84 TraesCS2D01G069600 chr3B 88.732 71 7 1 5443 5512 53591191 53591261 1.590000e-12 86.1
85 TraesCS2D01G069600 chr3B 100.000 28 0 0 1986 2013 50236942 50236915 1.600000e-02 52.8
86 TraesCS2D01G069600 chr5D 88.542 192 11 2 5368 5548 564881909 564881718 1.160000e-53 222.0
87 TraesCS2D01G069600 chr5D 88.172 186 18 3 5014 5198 388330726 388330544 1.500000e-52 219.0
88 TraesCS2D01G069600 chr5D 91.964 112 7 2 2002 2111 53583128 53583239 1.190000e-33 156.0
89 TraesCS2D01G069600 chr5D 95.714 70 3 0 1899 1968 61106287 61106218 7.280000e-21 113.0
90 TraesCS2D01G069600 chr5D 93.243 74 5 0 1895 1968 123459904 123459977 9.420000e-20 110.0
91 TraesCS2D01G069600 chr5D 90.909 77 7 0 1894 1970 514862757 514862681 4.380000e-18 104.0
92 TraesCS2D01G069600 chrUn 71.687 830 197 31 2722 3529 296206737 296207550 7.030000e-46 196.0
93 TraesCS2D01G069600 chrUn 71.687 830 197 31 2722 3529 316095074 316094261 7.030000e-46 196.0
94 TraesCS2D01G069600 chrUn 91.892 111 7 2 2002 2110 127140074 127140184 4.290000e-33 154.0
95 TraesCS2D01G069600 chrUn 90.991 111 8 2 2002 2110 141680797 141680907 2.000000e-31 148.0
96 TraesCS2D01G069600 chrUn 90.265 113 9 2 2002 2112 115041167 115041279 7.180000e-31 147.0
97 TraesCS2D01G069600 chrUn 94.505 91 5 0 2021 2111 31873195 31873105 3.340000e-29 141.0
98 TraesCS2D01G069600 chrUn 92.708 96 7 0 2022 2117 314616550 314616455 1.200000e-28 139.0
99 TraesCS2D01G069600 chrUn 91.176 102 7 2 2011 2110 50639495 50639394 4.320000e-28 137.0
100 TraesCS2D01G069600 chrUn 93.333 90 6 0 2021 2110 41734304 41734215 5.590000e-27 134.0
101 TraesCS2D01G069600 chrUn 92.473 93 7 0 2022 2114 42175613 42175521 5.590000e-27 134.0
102 TraesCS2D01G069600 chrUn 93.258 89 6 0 2022 2110 59151828 59151740 2.010000e-26 132.0
103 TraesCS2D01G069600 chrUn 88.785 107 10 2 2008 2112 369913292 369913186 7.230000e-26 130.0
104 TraesCS2D01G069600 chrUn 87.387 111 12 2 2002 2110 426802843 426802953 9.350000e-25 126.0
105 TraesCS2D01G069600 chrUn 95.652 69 3 0 1902 1970 127140184 127140116 2.620000e-20 111.0
106 TraesCS2D01G069600 chrUn 90.667 75 7 0 1894 1968 115041285 115041211 5.670000e-17 100.0
107 TraesCS2D01G069600 chrUn 91.781 73 5 1 1896 1968 141680912 141680841 5.670000e-17 100.0
108 TraesCS2D01G069600 chrUn 89.333 75 8 0 1894 1968 116287325 116287251 2.640000e-15 95.3
109 TraesCS2D01G069600 chrUn 93.548 62 4 0 1900 1961 51489139 51489078 9.480000e-15 93.5
110 TraesCS2D01G069600 chrUn 92.188 64 5 0 1905 1968 87933410 87933347 3.410000e-14 91.6
111 TraesCS2D01G069600 chrUn 91.045 67 6 0 1902 1968 99099403 99099337 3.410000e-14 91.6
112 TraesCS2D01G069600 chrUn 91.045 67 6 0 1902 1968 271159317 271159251 3.410000e-14 91.6
113 TraesCS2D01G069600 chrUn 91.045 67 6 0 1902 1968 289934131 289934065 3.410000e-14 91.6
114 TraesCS2D01G069600 chrUn 88.889 72 8 0 1901 1972 409687563 409687634 1.230000e-13 89.8
115 TraesCS2D01G069600 chrUn 88.000 75 8 1 1894 1968 37809844 37809917 4.410000e-13 87.9
116 TraesCS2D01G069600 chr5B 90.071 141 13 1 5374 5513 223556763 223556623 1.970000e-41 182.0
117 TraesCS2D01G069600 chr5B 87.970 133 10 6 2008 2136 498886088 498885958 1.540000e-32 152.0
118 TraesCS2D01G069600 chr5B 95.652 69 3 0 1902 1970 712462366 712462298 2.620000e-20 111.0
119 TraesCS2D01G069600 chr1B 81.429 210 33 2 1902 2110 111261244 111261448 5.510000e-37 167.0
120 TraesCS2D01G069600 chr1B 88.000 125 11 4 2002 2122 69844726 69844850 2.580000e-30 145.0
121 TraesCS2D01G069600 chr1B 92.308 78 3 3 1897 1972 394202877 394202801 3.390000e-19 108.0
122 TraesCS2D01G069600 chr1B 92.308 78 3 3 1897 1972 394287554 394287478 3.390000e-19 108.0
123 TraesCS2D01G069600 chr4D 92.661 109 6 2 2008 2114 3590578 3590470 1.190000e-33 156.0
124 TraesCS2D01G069600 chr4D 92.523 107 5 3 2008 2111 238640128 238640022 5.550000e-32 150.0
125 TraesCS2D01G069600 chr4D 92.381 105 6 2 2008 2110 12520244 12520140 2.000000e-31 148.0
126 TraesCS2D01G069600 chr4D 92.381 105 6 2 2008 2110 23422541 23422437 2.000000e-31 148.0
127 TraesCS2D01G069600 chr4D 92.381 105 6 2 2008 2110 437295869 437295765 2.000000e-31 148.0
128 TraesCS2D01G069600 chr4D 93.069 101 6 1 2011 2110 36603108 36603208 7.180000e-31 147.0
129 TraesCS2D01G069600 chr4D 91.589 107 7 2 2008 2112 355565231 355565125 7.180000e-31 147.0
130 TraesCS2D01G069600 chr4D 87.805 123 12 3 2001 2120 23005282 23005404 3.340000e-29 141.0
131 TraesCS2D01G069600 chr4D 94.030 67 4 0 1902 1968 12520140 12520206 1.580000e-17 102.0
132 TraesCS2D01G069600 chr4D 94.030 67 4 0 1902 1968 63049239 63049305 1.580000e-17 102.0
133 TraesCS2D01G069600 chr4D 94.030 67 4 0 1902 1968 102385214 102385148 1.580000e-17 102.0
134 TraesCS2D01G069600 chr4D 92.958 71 4 1 1899 1968 437295761 437295831 1.580000e-17 102.0
135 TraesCS2D01G069600 chr4D 91.549 71 6 0 1902 1972 64390632 64390562 2.040000e-16 99.0
136 TraesCS2D01G069600 chr4D 82.143 112 20 0 8366 8477 121465507 121465396 7.330000e-16 97.1
137 TraesCS2D01G069600 chr4D 88.750 80 8 1 1890 1968 355565114 355565193 7.330000e-16 97.1
138 TraesCS2D01G069600 chr1A 92.727 110 5 3 2011 2117 566481108 566480999 1.190000e-33 156.0
139 TraesCS2D01G069600 chr1A 87.619 105 13 0 8371 8475 589961626 589961730 1.210000e-23 122.0
140 TraesCS2D01G069600 chr6A 93.671 79 5 0 5574 5652 4667142 4667064 1.560000e-22 119.0
141 TraesCS2D01G069600 chr6A 90.769 65 5 1 5449 5512 20500305 20500241 1.590000e-12 86.1
142 TraesCS2D01G069600 chr3D 93.151 73 3 2 1886 1958 167553904 167553974 1.220000e-18 106.0
143 TraesCS2D01G069600 chr3D 89.855 69 5 2 5446 5512 196952218 196952286 4.410000e-13 87.9
144 TraesCS2D01G069600 chr3D 89.231 65 6 1 5449 5512 105170531 105170467 7.380000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G069600 chr2D 29176773 29185643 8870 False 7808.500000 10547 100.000000 1 8871 2 chr2D.!!$F2 8870
1 TraesCS2D01G069600 chr2D 18251424 18252474 1050 True 1369.000000 1369 90.198000 6229 7284 1 chr2D.!!$R1 1055
2 TraesCS2D01G069600 chr2D 82881108 82882161 1053 False 1362.000000 1362 90.038000 6229 7284 1 chr2D.!!$F1 1055
3 TraesCS2D01G069600 chr2A 31162957 31177943 14986 False 1704.628571 4183 86.828286 1 8341 7 chr2A.!!$F1 8340
4 TraesCS2D01G069600 chr2B 47453863 47459460 5597 True 1476.450000 3542 89.538250 132 7535 4 chr2B.!!$R5 7403
5 TraesCS2D01G069600 chr2B 47174541 47181912 7371 False 1157.500000 1945 85.729250 1 8334 4 chr2B.!!$F2 8333
6 TraesCS2D01G069600 chr2B 47424840 47429994 5154 True 577.750000 1323 84.587250 2109 8772 4 chr2B.!!$R4 6663
7 TraesCS2D01G069600 chr7A 61807053 61808196 1143 False 1724.000000 1724 93.707000 6127 7286 1 chr7A.!!$F1 1159
8 TraesCS2D01G069600 chr4B 273666813 273667930 1117 True 1648.000000 1648 93.192000 6130 7257 1 chr4B.!!$R2 1127
9 TraesCS2D01G069600 chr4B 273653234 273654350 1116 True 1602.000000 1602 92.485000 6130 7257 1 chr4B.!!$R1 1127
10 TraesCS2D01G069600 chr4B 273660026 273661328 1302 True 901.500000 1631 91.028500 5574 7257 2 chr4B.!!$R6 1683
11 TraesCS2D01G069600 chr7B 21257049 21258125 1076 False 1483.000000 1483 91.529000 6204 7285 1 chr7B.!!$F2 1081
12 TraesCS2D01G069600 chr7B 91131628 91132702 1074 False 1450.000000 1450 91.060000 6204 7281 1 chr7B.!!$F3 1077
13 TraesCS2D01G069600 chr4A 582846585 582847657 1072 True 1450.000000 1450 91.043000 6206 7285 1 chr4A.!!$R2 1079
14 TraesCS2D01G069600 chr4A 733819819 733820594 775 False 292.000000 292 73.819000 2752 3521 1 chr4A.!!$F3 769
15 TraesCS2D01G069600 chr6B 112417 114346 1929 True 793.000000 793 74.711000 2718 4669 1 chr6B.!!$R1 1951
16 TraesCS2D01G069600 chr6B 3724472 3726364 1892 False 702.000000 702 73.846000 2741 4668 1 chr6B.!!$F1 1927
17 TraesCS2D01G069600 chr6D 2293055 2294264 1209 True 597.000000 597 76.130000 2703 3944 1 chr6D.!!$R1 1241

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 151 0.035056 CCCACCAACCTCATCCTCAC 60.035 60.000 0.00 0.00 0.00 3.51 F
344 365 0.172352 CTGAGAAGACGGAGCACCTC 59.828 60.000 0.00 0.00 0.00 3.85 F
1003 1117 0.178964 CCCAAGTCACCCAACCATGT 60.179 55.000 0.00 0.00 0.00 3.21 F
1260 1374 0.393808 ACAACTTCCTGGTGTGCGTT 60.394 50.000 0.00 0.00 46.28 4.84 F
1617 1731 0.471211 TTGTCGGACCTGGAGGACTT 60.471 55.000 5.55 0.00 38.94 3.01 F
3360 5539 1.822990 TCGTAAACCGAAGCCTGATCT 59.177 47.619 0.00 0.00 44.03 2.75 F
3873 6092 0.385473 GAAACTTAAGCGCTTGCGCA 60.385 50.000 35.35 17.88 45.69 6.09 F
4921 7507 0.038526 ACGTAACTTGGTGCTCTCGG 60.039 55.000 0.00 0.00 0.00 4.63 F
5523 8354 0.108281 GGTGGGGCTTCTCGTTACTC 60.108 60.000 0.00 0.00 0.00 2.59 F
7194 10041 0.040058 TCATGCCTTGGATGTGCCTT 59.960 50.000 0.00 0.00 37.63 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1523 1637 0.458025 CTTGGTTAGCTCGACCCGTC 60.458 60.000 14.68 0.0 36.30 4.79 R
1831 1945 0.615331 ATGATTGAGGTGGACACGCT 59.385 50.000 0.00 0.0 0.00 5.07 R
1833 1947 2.099141 ACATGATTGAGGTGGACACG 57.901 50.000 0.00 0.0 0.00 4.49 R
3009 5185 2.083774 CACGCCACCACATTTCTGTAT 58.916 47.619 0.00 0.0 33.14 2.29 R
3539 5752 1.540797 GCCAAATGGTTTTGCTGCTCA 60.541 47.619 0.00 0.0 40.77 4.26 R
4569 6809 0.109342 CCACCCCAGCAGTCCATATC 59.891 60.000 0.00 0.0 0.00 1.63 R
5504 8335 0.108281 GAGTAACGAGAAGCCCCACC 60.108 60.000 0.00 0.0 0.00 4.61 R
6723 9560 0.250295 CCCAACCAAAGAGACGAGCA 60.250 55.000 0.00 0.0 0.00 4.26 R
7305 10152 0.942410 TCGTCGTCGGGCTGAAAAAG 60.942 55.000 0.00 0.0 37.69 2.27 R
8768 20690 0.031585 TACACCGCCGACATCATAGC 59.968 55.000 0.00 0.0 0.00 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.459640 GTTTGGTTCTAGAATTTGGAAGTTTAC 57.540 33.333 8.75 0.00 0.00 2.01
130 139 0.958382 GCATTCAGTACGCCCACCAA 60.958 55.000 0.00 0.00 0.00 3.67
142 151 0.035056 CCCACCAACCTCATCCTCAC 60.035 60.000 0.00 0.00 0.00 3.51
162 171 1.891919 GGGTGCACTTGAGCGACAA 60.892 57.895 17.98 0.00 37.31 3.18
242 259 5.641209 GGCGAGCAATAATGTATGAGAGATT 59.359 40.000 0.00 0.00 0.00 2.40
244 261 6.367149 GCGAGCAATAATGTATGAGAGATTGA 59.633 38.462 0.00 0.00 0.00 2.57
245 262 7.411696 GCGAGCAATAATGTATGAGAGATTGAG 60.412 40.741 0.00 0.00 0.00 3.02
246 263 7.811713 CGAGCAATAATGTATGAGAGATTGAGA 59.188 37.037 0.00 0.00 0.00 3.27
247 264 9.486497 GAGCAATAATGTATGAGAGATTGAGAA 57.514 33.333 0.00 0.00 0.00 2.87
248 265 9.842775 AGCAATAATGTATGAGAGATTGAGAAA 57.157 29.630 0.00 0.00 0.00 2.52
263 280 5.822584 TTGAGAAATAGTATGCGCGTATG 57.177 39.130 20.45 0.00 0.00 2.39
291 312 2.555757 GCATGGAAGTGAAAGAGCAAGT 59.444 45.455 0.00 0.00 0.00 3.16
295 316 3.181440 TGGAAGTGAAAGAGCAAGTGGAT 60.181 43.478 0.00 0.00 0.00 3.41
299 320 1.704628 TGAAAGAGCAAGTGGATGGGA 59.295 47.619 0.00 0.00 0.00 4.37
300 321 2.108075 TGAAAGAGCAAGTGGATGGGAA 59.892 45.455 0.00 0.00 0.00 3.97
309 330 5.721000 AGCAAGTGGATGGGAAAAATATCAA 59.279 36.000 0.00 0.00 0.00 2.57
344 365 0.172352 CTGAGAAGACGGAGCACCTC 59.828 60.000 0.00 0.00 0.00 3.85
345 366 1.251527 TGAGAAGACGGAGCACCTCC 61.252 60.000 0.00 1.10 46.44 4.30
429 457 4.070552 GCAGCCTCCTCCGACGTT 62.071 66.667 0.00 0.00 0.00 3.99
432 460 2.047443 AGCCTCCTCCGACGTTCTC 61.047 63.158 0.00 0.00 0.00 2.87
523 554 4.002982 GTCACAGTGCAACCTCATCATTA 58.997 43.478 0.00 0.00 37.80 1.90
526 557 5.711506 TCACAGTGCAACCTCATCATTAATT 59.288 36.000 0.00 0.00 37.80 1.40
527 558 6.032094 CACAGTGCAACCTCATCATTAATTC 58.968 40.000 0.00 0.00 37.80 2.17
528 559 5.711506 ACAGTGCAACCTCATCATTAATTCA 59.288 36.000 0.00 0.00 37.80 2.57
529 560 6.209192 ACAGTGCAACCTCATCATTAATTCAA 59.791 34.615 0.00 0.00 37.80 2.69
540 571 2.339728 TTAATTCAACAAAGCGGCCG 57.660 45.000 24.05 24.05 0.00 6.13
559 590 3.675228 GCCGGATCTCAAGAACGAGTTAA 60.675 47.826 5.05 0.00 34.46 2.01
579 610 0.755686 GGGCATCTCCATCTCGTTCT 59.244 55.000 0.00 0.00 36.21 3.01
580 611 1.270041 GGGCATCTCCATCTCGTTCTC 60.270 57.143 0.00 0.00 36.21 2.87
581 612 1.410517 GGCATCTCCATCTCGTTCTCA 59.589 52.381 0.00 0.00 34.01 3.27
582 613 2.468831 GCATCTCCATCTCGTTCTCAC 58.531 52.381 0.00 0.00 0.00 3.51
583 614 2.801342 GCATCTCCATCTCGTTCTCACC 60.801 54.545 0.00 0.00 0.00 4.02
584 615 2.215942 TCTCCATCTCGTTCTCACCA 57.784 50.000 0.00 0.00 0.00 4.17
585 616 2.095461 TCTCCATCTCGTTCTCACCAG 58.905 52.381 0.00 0.00 0.00 4.00
661 706 3.114616 CCCACGCTTGCTCGTCTG 61.115 66.667 0.00 0.00 41.21 3.51
695 747 4.752879 GCACGCCCGCAGACCTAA 62.753 66.667 0.00 0.00 0.00 2.69
697 749 3.307906 ACGCCCGCAGACCTAACA 61.308 61.111 0.00 0.00 0.00 2.41
757 848 0.820226 GCTGCTTGGGGATCTTTTCC 59.180 55.000 0.00 0.00 44.62 3.13
786 877 2.026822 CCTTGGTGTTGGATCTGCTAGT 60.027 50.000 0.00 0.00 0.00 2.57
815 907 1.006337 CCTCGGCTATGCTCTGCTC 60.006 63.158 0.00 0.00 0.00 4.26
959 1060 9.396022 CTTGTACTAACTTCCAATGGATGTTAT 57.604 33.333 29.19 22.82 45.06 1.89
1003 1117 0.178964 CCCAAGTCACCCAACCATGT 60.179 55.000 0.00 0.00 0.00 3.21
1004 1118 1.703411 CCAAGTCACCCAACCATGTT 58.297 50.000 0.00 0.00 0.00 2.71
1050 1164 0.822164 TACTCCTTAAGCTGGGCGAC 59.178 55.000 0.00 0.00 0.00 5.19
1121 1235 2.843113 AGTCCCTCAAGAAAGAGATGGG 59.157 50.000 0.00 0.00 37.87 4.00
1164 1278 3.376078 GTGGCCGAGGTACCACGA 61.376 66.667 30.02 10.21 46.32 4.35
1260 1374 0.393808 ACAACTTCCTGGTGTGCGTT 60.394 50.000 0.00 0.00 46.28 4.84
1390 1504 0.884514 GGCTCTCAAGAAACTTGCCC 59.115 55.000 6.62 2.06 33.45 5.36
1457 1571 3.548745 TGTCAATCCACCTAGCAGATG 57.451 47.619 0.00 0.00 0.00 2.90
1559 1673 0.693049 AAGAGGCTGGTACTTGGTGG 59.307 55.000 0.00 0.00 0.00 4.61
1562 1676 0.766674 AGGCTGGTACTTGGTGGTGA 60.767 55.000 0.00 0.00 0.00 4.02
1578 1692 3.820467 GTGGTGAGGATGTGTCAAATCAA 59.180 43.478 5.35 0.00 0.00 2.57
1581 1695 4.278170 GGTGAGGATGTGTCAAATCAACAA 59.722 41.667 5.35 0.00 0.00 2.83
1617 1731 0.471211 TTGTCGGACCTGGAGGACTT 60.471 55.000 5.55 0.00 38.94 3.01
1831 1945 4.703897 ACTTCAGAATGTCAGGTTCGAAA 58.296 39.130 0.00 0.00 37.40 3.46
1833 1947 3.067106 TCAGAATGTCAGGTTCGAAAGC 58.933 45.455 0.00 0.00 37.40 3.51
1864 1978 8.786898 CCACCTCAATCATGTTTATATAGTTGG 58.213 37.037 0.00 0.00 0.00 3.77
2008 2125 9.090103 TCATATACTGTATTTAGGAACAGAGGG 57.910 37.037 5.52 0.00 44.79 4.30
2009 2126 9.090103 CATATACTGTATTTAGGAACAGAGGGA 57.910 37.037 5.52 0.00 44.79 4.20
2010 2127 5.941555 ACTGTATTTAGGAACAGAGGGAG 57.058 43.478 9.30 0.00 44.79 4.30
2011 2128 5.342866 ACTGTATTTAGGAACAGAGGGAGT 58.657 41.667 9.30 0.00 44.79 3.85
2012 2129 6.500336 ACTGTATTTAGGAACAGAGGGAGTA 58.500 40.000 9.30 0.00 44.79 2.59
2013 2130 7.133483 ACTGTATTTAGGAACAGAGGGAGTAT 58.867 38.462 9.30 0.00 44.79 2.12
2014 2131 8.287350 ACTGTATTTAGGAACAGAGGGAGTATA 58.713 37.037 9.30 0.00 44.79 1.47
2015 2132 9.144298 CTGTATTTAGGAACAGAGGGAGTATAA 57.856 37.037 0.00 0.00 44.79 0.98
2016 2133 9.144298 TGTATTTAGGAACAGAGGGAGTATAAG 57.856 37.037 0.00 0.00 0.00 1.73
2017 2134 9.364653 GTATTTAGGAACAGAGGGAGTATAAGA 57.635 37.037 0.00 0.00 0.00 2.10
2019 2136 8.855804 TTTAGGAACAGAGGGAGTATAAGATT 57.144 34.615 0.00 0.00 0.00 2.40
2020 2137 8.855804 TTAGGAACAGAGGGAGTATAAGATTT 57.144 34.615 0.00 0.00 0.00 2.17
2021 2138 9.947189 TTAGGAACAGAGGGAGTATAAGATTTA 57.053 33.333 0.00 0.00 0.00 1.40
2023 2140 9.453830 AGGAACAGAGGGAGTATAAGATTTATT 57.546 33.333 0.00 0.00 0.00 1.40
2060 2177 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
2067 2445 7.928167 TCATTTTGCTCTGTATGTAGTCCATAG 59.072 37.037 0.00 0.00 36.71 2.23
2307 2714 8.458052 TGCACAACGTCATAATTAGATTGAATT 58.542 29.630 0.00 0.00 33.60 2.17
2486 2903 5.183140 CCACCAACTATTCTCAACGGAATTT 59.817 40.000 0.00 0.00 37.20 1.82
2608 4205 7.230849 AGTTCATGCATTCATTCCTTGTTTA 57.769 32.000 0.00 0.00 0.00 2.01
2609 4206 7.844009 AGTTCATGCATTCATTCCTTGTTTAT 58.156 30.769 0.00 0.00 0.00 1.40
2610 4207 7.977853 AGTTCATGCATTCATTCCTTGTTTATC 59.022 33.333 0.00 0.00 0.00 1.75
3026 5202 8.546597 AAAAATTTATACAGAAATGTGGTGGC 57.453 30.769 0.00 0.00 0.00 5.01
3323 5502 6.183361 GGAGAGGGTTATTTGAGATTGGAGAT 60.183 42.308 0.00 0.00 0.00 2.75
3360 5539 1.822990 TCGTAAACCGAAGCCTGATCT 59.177 47.619 0.00 0.00 44.03 2.75
3455 5662 4.641094 TGTTGGTTAGCGAAGGAAGAAAAA 59.359 37.500 0.00 0.00 0.00 1.94
3505 5715 7.846644 AGAAATACTCATCTTCAGAAAGCAG 57.153 36.000 0.00 0.00 32.18 4.24
3539 5752 6.995091 GGTTAGCTATCCAAACAAGAGATGAT 59.005 38.462 14.85 0.00 0.00 2.45
3548 5761 3.345508 ACAAGAGATGATGAGCAGCAA 57.654 42.857 0.00 0.00 34.69 3.91
3741 5960 4.159506 AGTTGAGATACTTGAGTCTGGAGC 59.840 45.833 0.00 0.00 0.00 4.70
3809 6028 3.491342 TCTGCAGACACTAGACTTGAGT 58.509 45.455 13.74 0.00 0.00 3.41
3810 6029 3.891977 TCTGCAGACACTAGACTTGAGTT 59.108 43.478 13.74 0.00 0.00 3.01
3826 6045 7.389053 AGACTTGAGTTACTGCAAGATAAAAGG 59.611 37.037 21.94 4.33 43.11 3.11
3833 6052 3.129287 ACTGCAAGATAAAAGGATTGCCG 59.871 43.478 6.32 2.93 45.76 5.69
3847 6066 2.649331 TTGCCGCAGAGTACTAGTTC 57.351 50.000 0.00 0.00 0.00 3.01
3873 6092 0.385473 GAAACTTAAGCGCTTGCGCA 60.385 50.000 35.35 17.88 45.69 6.09
3875 6094 0.454957 AACTTAAGCGCTTGCGCATG 60.455 50.000 35.35 24.23 45.69 4.06
3877 6096 2.257286 CTTAAGCGCTTGCGCATGGT 62.257 55.000 35.35 21.70 45.69 3.55
3962 6196 6.096001 CCCTGGAGGAGTTATCTTTGAAAATG 59.904 42.308 0.00 0.00 38.24 2.32
4053 6287 5.373812 TTTAAGGGGAAGTCTGGATGATC 57.626 43.478 0.00 0.00 0.00 2.92
4346 6580 4.750098 CCAGAGCTTCGTAGTTTGAAAGAA 59.250 41.667 0.00 0.00 0.00 2.52
4409 6643 0.768221 TCCCCAAGTTGAGGAGCTGT 60.768 55.000 1.23 0.00 0.00 4.40
4478 6712 0.450184 AATGCATTACGTTCGGCACC 59.550 50.000 11.02 0.00 39.34 5.01
4482 6716 2.648143 ATTACGTTCGGCACCGGGA 61.648 57.895 6.32 0.00 40.25 5.14
4559 6799 2.726351 CCTCCCTTCTCTCCGGTGC 61.726 68.421 0.00 0.00 0.00 5.01
4640 6910 1.026182 CAGCGGTGAGGCAAGCAATA 61.026 55.000 9.50 0.00 34.64 1.90
4670 6940 2.524887 AACCGTCCCACCCTTCGA 60.525 61.111 0.00 0.00 0.00 3.71
4674 6944 2.273179 CGTCCCACCCTTCGACTCA 61.273 63.158 0.00 0.00 0.00 3.41
4702 6980 2.036862 GTGGTGGAGATCCGGTATTACC 59.963 54.545 0.00 2.50 39.43 2.85
4715 7001 3.504520 CGGTATTACCACAGGCTTTTGTT 59.495 43.478 13.22 0.00 38.47 2.83
4716 7002 4.696402 CGGTATTACCACAGGCTTTTGTTA 59.304 41.667 13.22 0.00 38.47 2.41
4717 7003 5.181622 CGGTATTACCACAGGCTTTTGTTAA 59.818 40.000 13.22 0.00 38.47 2.01
4719 7005 7.576098 CGGTATTACCACAGGCTTTTGTTAATT 60.576 37.037 13.22 0.00 38.47 1.40
4720 7006 7.544217 GGTATTACCACAGGCTTTTGTTAATTG 59.456 37.037 8.03 0.00 38.42 2.32
4721 7007 6.472686 TTACCACAGGCTTTTGTTAATTGT 57.527 33.333 0.00 0.00 0.00 2.71
4722 7008 7.584122 TTACCACAGGCTTTTGTTAATTGTA 57.416 32.000 0.00 0.00 0.00 2.41
4723 7009 5.838529 ACCACAGGCTTTTGTTAATTGTAC 58.161 37.500 0.00 0.00 0.00 2.90
4726 7012 7.285858 ACCACAGGCTTTTGTTAATTGTACTTA 59.714 33.333 0.00 0.00 0.00 2.24
4727 7013 7.807907 CCACAGGCTTTTGTTAATTGTACTTAG 59.192 37.037 0.00 0.00 0.00 2.18
4729 7015 8.349983 ACAGGCTTTTGTTAATTGTACTTAGTG 58.650 33.333 0.00 0.00 0.00 2.74
4731 7017 8.784043 AGGCTTTTGTTAATTGTACTTAGTGAG 58.216 33.333 0.00 0.00 0.00 3.51
4855 7426 0.319555 TGTTGGTACGTCTGCTCAGC 60.320 55.000 0.00 0.00 0.00 4.26
4856 7427 0.319555 GTTGGTACGTCTGCTCAGCA 60.320 55.000 0.00 0.00 36.92 4.41
4875 7461 2.622436 CAGGAGGACAACGAAGAATCC 58.378 52.381 0.00 0.00 0.00 3.01
4886 7472 1.065854 CGAAGAATCCAGCTCCCAACT 60.066 52.381 0.00 0.00 0.00 3.16
4904 7490 3.644884 ACTGACAGAACAAGAGGTACG 57.355 47.619 10.08 0.00 0.00 3.67
4906 7492 4.139786 ACTGACAGAACAAGAGGTACGTA 58.860 43.478 10.08 0.00 0.00 3.57
4907 7493 4.581824 ACTGACAGAACAAGAGGTACGTAA 59.418 41.667 10.08 0.00 0.00 3.18
4908 7494 4.863491 TGACAGAACAAGAGGTACGTAAC 58.137 43.478 1.22 1.22 0.00 2.50
4909 7495 4.581824 TGACAGAACAAGAGGTACGTAACT 59.418 41.667 14.27 14.27 0.00 2.24
4910 7496 5.068198 TGACAGAACAAGAGGTACGTAACTT 59.932 40.000 15.64 9.52 0.00 2.66
4911 7497 5.287226 ACAGAACAAGAGGTACGTAACTTG 58.713 41.667 15.64 21.16 43.30 3.16
4912 7498 4.684703 CAGAACAAGAGGTACGTAACTTGG 59.315 45.833 26.58 18.02 42.39 3.61
4914 7500 3.986277 ACAAGAGGTACGTAACTTGGTG 58.014 45.455 26.58 21.14 42.39 4.17
4918 7504 2.230750 GAGGTACGTAACTTGGTGCTCT 59.769 50.000 15.64 0.00 0.00 4.09
4920 7506 2.248487 GTACGTAACTTGGTGCTCTCG 58.752 52.381 0.00 0.00 0.00 4.04
4921 7507 0.038526 ACGTAACTTGGTGCTCTCGG 60.039 55.000 0.00 0.00 0.00 4.63
4922 7508 0.736325 CGTAACTTGGTGCTCTCGGG 60.736 60.000 0.00 0.00 0.00 5.14
4925 7511 0.250338 AACTTGGTGCTCTCGGGTTC 60.250 55.000 0.00 0.00 0.00 3.62
4937 7523 2.727392 CGGGTTCCCGTGCATCCTA 61.727 63.158 20.65 0.00 43.86 2.94
4938 7524 1.837090 GGGTTCCCGTGCATCCTAT 59.163 57.895 0.00 0.00 0.00 2.57
4939 7525 1.053424 GGGTTCCCGTGCATCCTATA 58.947 55.000 0.00 0.00 0.00 1.31
4941 7527 2.835764 GGGTTCCCGTGCATCCTATATA 59.164 50.000 0.00 0.00 0.00 0.86
4943 7529 4.442706 GGTTCCCGTGCATCCTATATATG 58.557 47.826 0.00 0.00 0.00 1.78
4955 7541 7.889589 CATCCTATATATGCACAACGAAGAA 57.110 36.000 0.00 0.00 0.00 2.52
4956 7542 8.310406 CATCCTATATATGCACAACGAAGAAA 57.690 34.615 0.00 0.00 0.00 2.52
4986 7797 5.555017 TCTGAATTTTCCTCACTCTTCCTG 58.445 41.667 0.00 0.00 0.00 3.86
4987 7798 4.074970 TGAATTTTCCTCACTCTTCCTGC 58.925 43.478 0.00 0.00 0.00 4.85
4988 7799 4.202503 TGAATTTTCCTCACTCTTCCTGCT 60.203 41.667 0.00 0.00 0.00 4.24
5015 7826 9.832445 TCCATTTACCTTATCAATCTCTTGTAC 57.168 33.333 0.00 0.00 33.87 2.90
5016 7827 9.838339 CCATTTACCTTATCAATCTCTTGTACT 57.162 33.333 0.00 0.00 33.87 2.73
5019 7830 6.487299 ACCTTATCAATCTCTTGTACTCCC 57.513 41.667 0.00 0.00 33.87 4.30
5020 7831 6.206042 ACCTTATCAATCTCTTGTACTCCCT 58.794 40.000 0.00 0.00 33.87 4.20
5021 7832 6.325286 ACCTTATCAATCTCTTGTACTCCCTC 59.675 42.308 0.00 0.00 33.87 4.30
5022 7833 6.239458 CCTTATCAATCTCTTGTACTCCCTCC 60.239 46.154 0.00 0.00 33.87 4.30
5023 7834 3.024547 TCAATCTCTTGTACTCCCTCCG 58.975 50.000 0.00 0.00 33.87 4.63
5024 7835 2.761208 CAATCTCTTGTACTCCCTCCGT 59.239 50.000 0.00 0.00 0.00 4.69
5025 7836 2.599408 TCTCTTGTACTCCCTCCGTT 57.401 50.000 0.00 0.00 0.00 4.44
5026 7837 2.444421 TCTCTTGTACTCCCTCCGTTC 58.556 52.381 0.00 0.00 0.00 3.95
5027 7838 1.477295 CTCTTGTACTCCCTCCGTTCC 59.523 57.143 0.00 0.00 0.00 3.62
5028 7839 1.076677 TCTTGTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 0.00 3.36
5029 7840 2.309755 TCTTGTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 0.00 2.94
5030 7841 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
5031 7842 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
5032 7843 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
5033 7844 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
5034 7845 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
5035 7846 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
5036 7847 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
5037 7848 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
5038 7849 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
5039 7850 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
5040 7851 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
5041 7852 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
5042 7853 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
5043 7854 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
5044 7855 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
5045 7856 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
5046 7857 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
5047 7858 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
5177 7988 9.916360 AAATAAATATTTAGGAACGGAGGAAGT 57.084 29.630 13.15 0.00 34.36 3.01
5183 7994 5.841957 TTAGGAACGGAGGAAGTATGTAC 57.158 43.478 0.00 0.00 0.00 2.90
5198 8009 5.198965 AGTATGTACGTAGTCCCATGAAGT 58.801 41.667 0.00 0.00 43.93 3.01
5199 8010 5.655532 AGTATGTACGTAGTCCCATGAAGTT 59.344 40.000 0.00 0.00 43.93 2.66
5200 8011 4.445452 TGTACGTAGTCCCATGAAGTTC 57.555 45.455 0.00 0.00 43.93 3.01
5201 8012 3.827876 TGTACGTAGTCCCATGAAGTTCA 59.172 43.478 8.27 8.27 43.93 3.18
5202 8013 3.314541 ACGTAGTCCCATGAAGTTCAC 57.685 47.619 7.96 0.00 29.74 3.18
5203 8014 2.259618 CGTAGTCCCATGAAGTTCACG 58.740 52.381 7.96 0.00 0.00 4.35
5204 8015 2.000447 GTAGTCCCATGAAGTTCACGC 59.000 52.381 7.96 0.00 0.00 5.34
5208 8019 1.586154 CCCATGAAGTTCACGCCCAC 61.586 60.000 7.96 0.00 0.00 4.61
5229 8040 1.153147 GTCGGATTCCTCCAAGGCC 60.153 63.158 0.00 0.00 42.19 5.19
5246 8057 1.923227 GCCGCAGACCAAAAGGTAGC 61.923 60.000 0.00 0.00 0.00 3.58
5250 8061 2.000447 GCAGACCAAAAGGTAGCTACG 59.000 52.381 17.48 5.31 0.00 3.51
5251 8062 2.612221 GCAGACCAAAAGGTAGCTACGT 60.612 50.000 17.48 15.37 0.00 3.57
5256 8067 5.890419 AGACCAAAAGGTAGCTACGTACTAT 59.110 40.000 18.79 1.20 0.00 2.12
5286 8117 1.202486 CCCGTACGTGGATAATGCACT 60.202 52.381 15.21 0.00 36.50 4.40
5291 8122 5.571741 CCGTACGTGGATAATGCACTATTAG 59.428 44.000 15.21 0.00 36.50 1.73
5322 8153 7.647907 ACACTTTTGATTTTGATTGATGCTC 57.352 32.000 0.00 0.00 0.00 4.26
5331 8162 9.199645 TGATTTTGATTGATGCTCCCTAAAATA 57.800 29.630 0.00 0.00 29.63 1.40
5334 8165 8.765488 TTTGATTGATGCTCCCTAAAATATGA 57.235 30.769 0.00 0.00 0.00 2.15
5335 8166 7.991084 TGATTGATGCTCCCTAAAATATGAG 57.009 36.000 0.00 0.00 0.00 2.90
5336 8167 7.520798 TGATTGATGCTCCCTAAAATATGAGT 58.479 34.615 0.00 0.00 0.00 3.41
5337 8168 8.000709 TGATTGATGCTCCCTAAAATATGAGTT 58.999 33.333 0.00 0.00 0.00 3.01
5338 8169 7.807977 TTGATGCTCCCTAAAATATGAGTTC 57.192 36.000 0.00 0.00 0.00 3.01
5339 8170 6.299141 TGATGCTCCCTAAAATATGAGTTCC 58.701 40.000 0.00 0.00 0.00 3.62
5340 8171 5.975988 TGCTCCCTAAAATATGAGTTCCT 57.024 39.130 0.00 0.00 0.00 3.36
5343 8174 6.069673 TGCTCCCTAAAATATGAGTTCCTTGA 60.070 38.462 0.00 0.00 0.00 3.02
5344 8175 6.828785 GCTCCCTAAAATATGAGTTCCTTGAA 59.171 38.462 0.00 0.00 0.00 2.69
5345 8176 7.339466 GCTCCCTAAAATATGAGTTCCTTGAAA 59.661 37.037 0.00 0.00 0.00 2.69
5346 8177 8.807948 TCCCTAAAATATGAGTTCCTTGAAAG 57.192 34.615 0.00 0.00 0.00 2.62
5347 8178 7.339466 TCCCTAAAATATGAGTTCCTTGAAAGC 59.661 37.037 0.00 0.00 0.00 3.51
5348 8179 7.122650 CCCTAAAATATGAGTTCCTTGAAAGCA 59.877 37.037 0.00 0.00 0.00 3.91
5349 8180 8.522830 CCTAAAATATGAGTTCCTTGAAAGCAA 58.477 33.333 0.00 0.00 0.00 3.91
5353 8184 8.814038 AATATGAGTTCCTTGAAAGCAATAGT 57.186 30.769 0.00 0.00 32.68 2.12
5354 8185 8.814038 ATATGAGTTCCTTGAAAGCAATAGTT 57.186 30.769 0.00 0.00 32.68 2.24
5355 8186 6.959639 TGAGTTCCTTGAAAGCAATAGTTT 57.040 33.333 0.00 0.00 32.68 2.66
5356 8187 7.346751 TGAGTTCCTTGAAAGCAATAGTTTT 57.653 32.000 0.00 0.00 32.68 2.43
5357 8188 7.781056 TGAGTTCCTTGAAAGCAATAGTTTTT 58.219 30.769 0.00 0.00 32.68 1.94
5371 8202 4.755656 TTTTTGATCCCCTCCCGC 57.244 55.556 0.00 0.00 0.00 6.13
5372 8203 1.377987 TTTTTGATCCCCTCCCGCG 60.378 57.895 0.00 0.00 0.00 6.46
5373 8204 1.843462 TTTTTGATCCCCTCCCGCGA 61.843 55.000 8.23 0.00 0.00 5.87
5374 8205 2.530958 TTTTGATCCCCTCCCGCGAC 62.531 60.000 8.23 0.00 0.00 5.19
5379 8210 4.936081 CCCCTCCCGCGACCCTAT 62.936 72.222 8.23 0.00 0.00 2.57
5380 8211 3.303928 CCCTCCCGCGACCCTATC 61.304 72.222 8.23 0.00 0.00 2.08
5381 8212 3.303928 CCTCCCGCGACCCTATCC 61.304 72.222 8.23 0.00 0.00 2.59
5382 8213 3.303928 CTCCCGCGACCCTATCCC 61.304 72.222 8.23 0.00 0.00 3.85
5383 8214 4.928140 TCCCGCGACCCTATCCCC 62.928 72.222 8.23 0.00 0.00 4.81
5384 8215 4.936081 CCCGCGACCCTATCCCCT 62.936 72.222 8.23 0.00 0.00 4.79
5385 8216 3.303928 CCGCGACCCTATCCCCTC 61.304 72.222 8.23 0.00 0.00 4.30
5386 8217 3.303928 CGCGACCCTATCCCCTCC 61.304 72.222 0.00 0.00 0.00 4.30
5387 8218 2.923568 GCGACCCTATCCCCTCCC 60.924 72.222 0.00 0.00 0.00 4.30
5388 8219 2.600769 CGACCCTATCCCCTCCCG 60.601 72.222 0.00 0.00 0.00 5.14
5389 8220 2.923568 GACCCTATCCCCTCCCGC 60.924 72.222 0.00 0.00 0.00 6.13
5390 8221 4.936081 ACCCTATCCCCTCCCGCG 62.936 72.222 0.00 0.00 0.00 6.46
5426 8257 2.190578 CGGGAGGGCATCTCAACC 59.809 66.667 0.00 0.00 44.19 3.77
5427 8258 2.370445 CGGGAGGGCATCTCAACCT 61.370 63.158 0.00 0.00 44.19 3.50
5430 8261 1.144936 GAGGGCATCTCAACCTCCG 59.855 63.158 0.00 0.00 43.93 4.63
5431 8262 2.514824 GGGCATCTCAACCTCCGC 60.515 66.667 0.00 0.00 0.00 5.54
5432 8263 2.514824 GGCATCTCAACCTCCGCC 60.515 66.667 0.00 0.00 0.00 6.13
5433 8264 2.892425 GCATCTCAACCTCCGCCG 60.892 66.667 0.00 0.00 0.00 6.46
5434 8265 2.892425 CATCTCAACCTCCGCCGC 60.892 66.667 0.00 0.00 0.00 6.53
5435 8266 4.162690 ATCTCAACCTCCGCCGCC 62.163 66.667 0.00 0.00 0.00 6.13
5448 8279 4.785453 CCGCCAGCCAACCTCCTC 62.785 72.222 0.00 0.00 0.00 3.71
5449 8280 4.785453 CGCCAGCCAACCTCCTCC 62.785 72.222 0.00 0.00 0.00 4.30
5450 8281 3.334054 GCCAGCCAACCTCCTCCT 61.334 66.667 0.00 0.00 0.00 3.69
5451 8282 2.993853 CCAGCCAACCTCCTCCTC 59.006 66.667 0.00 0.00 0.00 3.71
5452 8283 2.674220 CCAGCCAACCTCCTCCTCC 61.674 68.421 0.00 0.00 0.00 4.30
5453 8284 2.285743 AGCCAACCTCCTCCTCCC 60.286 66.667 0.00 0.00 0.00 4.30
5454 8285 2.610859 GCCAACCTCCTCCTCCCA 60.611 66.667 0.00 0.00 0.00 4.37
5455 8286 2.972819 GCCAACCTCCTCCTCCCAC 61.973 68.421 0.00 0.00 0.00 4.61
5456 8287 2.660064 CCAACCTCCTCCTCCCACG 61.660 68.421 0.00 0.00 0.00 4.94
5457 8288 3.003763 AACCTCCTCCTCCCACGC 61.004 66.667 0.00 0.00 0.00 5.34
5519 8350 4.699522 GCGGTGGGGCTTCTCGTT 62.700 66.667 0.00 0.00 0.00 3.85
5520 8351 2.975536 CGGTGGGGCTTCTCGTTA 59.024 61.111 0.00 0.00 0.00 3.18
5521 8352 1.447314 CGGTGGGGCTTCTCGTTAC 60.447 63.158 0.00 0.00 0.00 2.50
5522 8353 1.885163 CGGTGGGGCTTCTCGTTACT 61.885 60.000 0.00 0.00 0.00 2.24
5523 8354 0.108281 GGTGGGGCTTCTCGTTACTC 60.108 60.000 0.00 0.00 0.00 2.59
5524 8355 0.108281 GTGGGGCTTCTCGTTACTCC 60.108 60.000 0.00 0.00 0.00 3.85
5525 8356 1.141234 GGGGCTTCTCGTTACTCCG 59.859 63.158 0.00 0.00 0.00 4.63
5526 8357 1.518792 GGGCTTCTCGTTACTCCGC 60.519 63.158 0.00 0.00 0.00 5.54
5527 8358 1.214589 GGCTTCTCGTTACTCCGCA 59.785 57.895 0.00 0.00 0.00 5.69
5528 8359 0.802607 GGCTTCTCGTTACTCCGCAG 60.803 60.000 0.00 0.00 0.00 5.18
5623 8454 4.182433 TTGGTGGTGGCTCGTGCA 62.182 61.111 12.07 0.00 41.91 4.57
5685 8516 3.151710 CCGGACGGCTATGGGTCA 61.152 66.667 0.00 0.00 34.87 4.02
5687 8518 1.006102 CGGACGGCTATGGGTCATC 60.006 63.158 0.00 0.00 34.87 2.92
5688 8519 1.006102 GGACGGCTATGGGTCATCG 60.006 63.158 0.00 0.00 34.87 3.84
6457 9292 2.741985 TCGGGTCGCTACGTTCGA 60.742 61.111 8.25 8.25 0.00 3.71
6594 9429 3.984352 GGACTGACCTCGTCTCGT 58.016 61.111 0.00 0.00 33.15 4.18
6598 9433 1.244697 ACTGACCTCGTCTCGTGCAT 61.245 55.000 0.00 0.00 33.15 3.96
6884 9721 4.594854 TGTGGGCGGCATGGTTGT 62.595 61.111 12.47 0.00 0.00 3.32
7081 9921 3.306780 CGGTGTTGTATCCTTCCTGAAGT 60.307 47.826 6.19 0.00 36.72 3.01
7186 10033 1.070134 GCCTACGTATCATGCCTTGGA 59.930 52.381 0.00 0.00 0.00 3.53
7191 10038 1.265095 CGTATCATGCCTTGGATGTGC 59.735 52.381 0.00 0.00 33.16 4.57
7192 10039 1.610522 GTATCATGCCTTGGATGTGCC 59.389 52.381 0.00 0.00 33.16 5.01
7193 10040 0.260816 ATCATGCCTTGGATGTGCCT 59.739 50.000 0.00 0.00 37.63 4.75
7194 10041 0.040058 TCATGCCTTGGATGTGCCTT 59.960 50.000 0.00 0.00 37.63 4.35
7195 10042 0.174845 CATGCCTTGGATGTGCCTTG 59.825 55.000 0.00 0.00 37.63 3.61
7196 10043 0.974010 ATGCCTTGGATGTGCCTTGG 60.974 55.000 0.00 0.00 37.63 3.61
7197 10044 1.304381 GCCTTGGATGTGCCTTGGA 60.304 57.895 0.00 0.00 37.63 3.53
7200 10047 1.617804 CCTTGGATGTGCCTTGGATGT 60.618 52.381 0.00 0.00 37.63 3.06
7208 10055 2.226330 GTGCCTTGGATGTGTGTGTTA 58.774 47.619 0.00 0.00 0.00 2.41
7287 10134 4.328667 CGAAAGCCTTTTTCGGTAATACG 58.671 43.478 12.72 0.00 45.17 3.06
7288 10135 4.091800 CGAAAGCCTTTTTCGGTAATACGA 59.908 41.667 12.72 0.00 45.17 3.43
7289 10136 5.541098 AAAGCCTTTTTCGGTAATACGAG 57.459 39.130 0.00 0.00 44.47 4.18
7290 10137 4.198028 AGCCTTTTTCGGTAATACGAGT 57.802 40.909 0.00 0.00 44.47 4.18
7291 10138 4.572909 AGCCTTTTTCGGTAATACGAGTT 58.427 39.130 0.00 0.00 44.47 3.01
7292 10139 4.628766 AGCCTTTTTCGGTAATACGAGTTC 59.371 41.667 0.00 0.00 44.47 3.01
7293 10140 4.201753 GCCTTTTTCGGTAATACGAGTTCC 60.202 45.833 0.00 0.00 44.47 3.62
7294 10141 5.173664 CCTTTTTCGGTAATACGAGTTCCT 58.826 41.667 0.00 0.00 44.47 3.36
7295 10142 5.290400 CCTTTTTCGGTAATACGAGTTCCTC 59.710 44.000 0.00 0.00 44.47 3.71
7493 10506 1.996292 CTCAGGCGATCAACGAGAAA 58.004 50.000 0.00 0.00 45.77 2.52
7502 10515 3.488384 CGATCAACGAGAAAGAGGAGGAG 60.488 52.174 0.00 0.00 45.77 3.69
7529 10542 2.575993 CAGGCAGACCGACAGGAG 59.424 66.667 0.00 0.00 42.76 3.69
7538 10551 2.575993 CGACAGGAGCAGGTCTGG 59.424 66.667 0.00 0.00 35.47 3.86
7546 10559 1.373570 GAGCAGGTCTGGTGCAATAC 58.626 55.000 7.45 0.00 43.82 1.89
7547 10560 0.987294 AGCAGGTCTGGTGCAATACT 59.013 50.000 1.56 0.00 43.82 2.12
7548 10561 2.168521 GAGCAGGTCTGGTGCAATACTA 59.831 50.000 7.45 0.00 43.82 1.82
7603 10669 7.041635 TCCACGAATCGAATGGTTATTAGTA 57.958 36.000 10.55 0.00 34.89 1.82
7604 10670 6.919662 TCCACGAATCGAATGGTTATTAGTAC 59.080 38.462 10.55 0.00 34.89 2.73
7611 10677 5.240183 TCGAATGGTTATTAGTACGAGGGAG 59.760 44.000 0.00 0.00 0.00 4.30
7616 10682 8.896722 ATGGTTATTAGTACGAGGGAGATTAT 57.103 34.615 0.00 0.00 0.00 1.28
7617 10683 8.716674 TGGTTATTAGTACGAGGGAGATTATT 57.283 34.615 0.00 0.00 0.00 1.40
7879 19619 1.618837 TCTTCTCACTAGTGTGGTGCC 59.381 52.381 21.99 0.00 43.94 5.01
7880 19620 0.317160 TTCTCACTAGTGTGGTGCCG 59.683 55.000 21.99 4.34 43.94 5.69
7923 19682 4.096732 ACTTCTGAATAATTGCGTTGCC 57.903 40.909 0.00 0.00 0.00 4.52
8008 19775 9.014297 GCTATTGTTTGGCTTGTAATAGGATAT 57.986 33.333 0.00 0.00 33.87 1.63
8024 19791 1.532868 GATATTGTGATGCGCCAGGTC 59.467 52.381 4.18 0.00 0.00 3.85
8048 19815 2.181125 TGCCCCGTAGTCTATGTTTGA 58.819 47.619 0.00 0.00 0.00 2.69
8057 19824 6.262496 CCGTAGTCTATGTTTGACCTAGATCA 59.738 42.308 0.00 0.00 35.21 2.92
8073 19840 5.245751 CCTAGATCAATCAGGCATAGACAGT 59.754 44.000 0.00 0.00 0.00 3.55
8116 19901 8.514330 TCCATTTACACATGTTAATTAGGACC 57.486 34.615 0.00 0.00 0.00 4.46
8119 19904 6.995511 TTACACATGTTAATTAGGACCTGC 57.004 37.500 3.53 0.00 0.00 4.85
8122 19907 6.717289 ACACATGTTAATTAGGACCTGCTTA 58.283 36.000 3.53 0.00 0.00 3.09
8220 20025 3.837213 AAATTGGCGTTCATCTGTCTG 57.163 42.857 0.00 0.00 0.00 3.51
8304 20220 5.239525 GGAAGACATACAAGTTGCAAGTTCT 59.760 40.000 16.66 8.25 0.00 3.01
8307 20223 6.498304 AGACATACAAGTTGCAAGTTCTTTG 58.502 36.000 16.66 12.70 39.88 2.77
8356 20272 9.489084 AAAATGCTACTGCGAACAATATATAGA 57.511 29.630 0.00 0.00 43.34 1.98
8357 20273 8.694975 AATGCTACTGCGAACAATATATAGAG 57.305 34.615 0.00 0.00 43.34 2.43
8358 20274 7.215719 TGCTACTGCGAACAATATATAGAGT 57.784 36.000 0.00 0.00 43.34 3.24
8359 20275 7.658261 TGCTACTGCGAACAATATATAGAGTT 58.342 34.615 3.09 3.09 43.34 3.01
8360 20276 8.789762 TGCTACTGCGAACAATATATAGAGTTA 58.210 33.333 3.38 0.00 43.34 2.24
8361 20277 9.622004 GCTACTGCGAACAATATATAGAGTTAA 57.378 33.333 3.38 0.00 0.00 2.01
8365 20281 9.746711 CTGCGAACAATATATAGAGTTAAATGC 57.253 33.333 3.38 6.12 0.00 3.56
8366 20282 9.267084 TGCGAACAATATATAGAGTTAAATGCA 57.733 29.630 0.00 0.00 0.00 3.96
8367 20283 9.746711 GCGAACAATATATAGAGTTAAATGCAG 57.253 33.333 0.00 0.00 0.00 4.41
8375 20291 4.836125 AGAGTTAAATGCAGTGGTTGTG 57.164 40.909 0.00 0.00 0.00 3.33
8376 20292 4.460263 AGAGTTAAATGCAGTGGTTGTGA 58.540 39.130 0.00 0.00 0.00 3.58
8377 20293 4.275936 AGAGTTAAATGCAGTGGTTGTGAC 59.724 41.667 0.00 0.00 0.00 3.67
8378 20294 3.003275 AGTTAAATGCAGTGGTTGTGACG 59.997 43.478 0.00 0.00 0.00 4.35
8379 20295 0.667993 AAATGCAGTGGTTGTGACGG 59.332 50.000 0.00 0.00 0.00 4.79
8380 20296 0.465460 AATGCAGTGGTTGTGACGGT 60.465 50.000 0.00 0.00 0.00 4.83
8381 20297 0.465460 ATGCAGTGGTTGTGACGGTT 60.465 50.000 0.00 0.00 0.00 4.44
8382 20298 0.678366 TGCAGTGGTTGTGACGGTTT 60.678 50.000 0.00 0.00 0.00 3.27
8383 20299 0.454196 GCAGTGGTTGTGACGGTTTT 59.546 50.000 0.00 0.00 0.00 2.43
8384 20300 1.533129 GCAGTGGTTGTGACGGTTTTC 60.533 52.381 0.00 0.00 0.00 2.29
8385 20301 1.011333 AGTGGTTGTGACGGTTTTCG 58.989 50.000 0.00 0.00 45.88 3.46
8387 20303 1.009335 GGTTGTGACGGTTTTCGCC 60.009 57.895 0.00 0.00 43.89 5.54
8395 20311 1.991264 GACGGTTTTCGCCTAGTTCTC 59.009 52.381 0.00 0.00 43.89 2.87
8397 20313 1.337447 CGGTTTTCGCCTAGTTCTCCA 60.337 52.381 0.00 0.00 0.00 3.86
8398 20314 2.074576 GGTTTTCGCCTAGTTCTCCAC 58.925 52.381 0.00 0.00 0.00 4.02
8399 20315 2.549349 GGTTTTCGCCTAGTTCTCCACA 60.549 50.000 0.00 0.00 0.00 4.17
8401 20317 2.450609 TTCGCCTAGTTCTCCACAAC 57.549 50.000 0.00 0.00 0.00 3.32
8402 20318 0.606604 TCGCCTAGTTCTCCACAACC 59.393 55.000 0.00 0.00 0.00 3.77
8407 20323 3.665190 CCTAGTTCTCCACAACCAACTC 58.335 50.000 0.00 0.00 31.52 3.01
8409 20325 1.202651 AGTTCTCCACAACCAACTCGG 60.203 52.381 0.00 0.00 42.50 4.63
8414 20330 0.240945 CCACAACCAACTCGGCAATC 59.759 55.000 0.00 0.00 39.03 2.67
8417 20333 2.416547 CACAACCAACTCGGCAATCTAG 59.583 50.000 0.00 0.00 39.03 2.43
8419 20335 3.074412 CAACCAACTCGGCAATCTAGTT 58.926 45.455 0.00 0.00 39.03 2.24
8421 20337 3.751518 ACCAACTCGGCAATCTAGTTTT 58.248 40.909 0.00 0.00 39.03 2.43
8422 20338 3.751698 ACCAACTCGGCAATCTAGTTTTC 59.248 43.478 0.00 0.00 39.03 2.29
8423 20339 3.181520 CCAACTCGGCAATCTAGTTTTCG 60.182 47.826 0.00 0.00 31.21 3.46
8424 20340 2.000447 ACTCGGCAATCTAGTTTTCGC 59.000 47.619 0.00 0.00 0.00 4.70
8425 20341 1.327764 CTCGGCAATCTAGTTTTCGCC 59.672 52.381 5.27 5.27 36.16 5.54
8426 20342 0.377203 CGGCAATCTAGTTTTCGCCC 59.623 55.000 8.55 0.00 36.12 6.13
8427 20343 0.377203 GGCAATCTAGTTTTCGCCCG 59.623 55.000 4.30 0.00 33.31 6.13
8429 20345 1.734163 CAATCTAGTTTTCGCCCGGT 58.266 50.000 0.00 0.00 0.00 5.28
8430 20346 2.081462 CAATCTAGTTTTCGCCCGGTT 58.919 47.619 0.00 0.00 0.00 4.44
8431 20347 2.484742 ATCTAGTTTTCGCCCGGTTT 57.515 45.000 0.00 0.00 0.00 3.27
8433 20349 2.145536 TCTAGTTTTCGCCCGGTTTTC 58.854 47.619 0.00 0.00 0.00 2.29
8434 20350 1.198408 CTAGTTTTCGCCCGGTTTTCC 59.802 52.381 0.00 0.00 0.00 3.13
8435 20351 1.007038 GTTTTCGCCCGGTTTTCCC 60.007 57.895 0.00 0.00 36.42 3.97
8437 20353 0.110104 TTTTCGCCCGGTTTTCCCTA 59.890 50.000 0.00 0.00 36.42 3.53
8438 20354 0.110104 TTTCGCCCGGTTTTCCCTAA 59.890 50.000 0.00 0.00 36.42 2.69
8439 20355 0.328926 TTCGCCCGGTTTTCCCTAAT 59.671 50.000 0.00 0.00 36.42 1.73
8440 20356 0.328926 TCGCCCGGTTTTCCCTAATT 59.671 50.000 0.00 0.00 36.42 1.40
8441 20357 1.558756 TCGCCCGGTTTTCCCTAATTA 59.441 47.619 0.00 0.00 36.42 1.40
8442 20358 2.026449 TCGCCCGGTTTTCCCTAATTAA 60.026 45.455 0.00 0.00 36.42 1.40
8443 20359 2.097954 CGCCCGGTTTTCCCTAATTAAC 59.902 50.000 0.00 0.00 36.42 2.01
8444 20360 3.359033 GCCCGGTTTTCCCTAATTAACT 58.641 45.455 0.00 0.00 36.42 2.24
8445 20361 4.525996 GCCCGGTTTTCCCTAATTAACTA 58.474 43.478 0.00 0.00 36.42 2.24
8446 20362 4.949238 GCCCGGTTTTCCCTAATTAACTAA 59.051 41.667 0.00 0.00 36.42 2.24
8447 20363 5.066893 GCCCGGTTTTCCCTAATTAACTAAG 59.933 44.000 0.00 0.00 36.42 2.18
8448 20364 5.066893 CCCGGTTTTCCCTAATTAACTAAGC 59.933 44.000 0.00 0.00 36.42 3.09
8449 20365 5.648960 CCGGTTTTCCCTAATTAACTAAGCA 59.351 40.000 0.00 0.00 36.42 3.91
8450 20366 6.151480 CCGGTTTTCCCTAATTAACTAAGCAA 59.849 38.462 0.00 0.00 36.42 3.91
8451 20367 7.025365 CGGTTTTCCCTAATTAACTAAGCAAC 58.975 38.462 0.00 0.00 36.42 4.17
8452 20368 7.094506 CGGTTTTCCCTAATTAACTAAGCAACT 60.095 37.037 0.00 0.00 36.42 3.16
8453 20369 8.242053 GGTTTTCCCTAATTAACTAAGCAACTC 58.758 37.037 0.00 0.00 0.00 3.01
8454 20370 9.011095 GTTTTCCCTAATTAACTAAGCAACTCT 57.989 33.333 0.00 0.00 0.00 3.24
8455 20371 9.582648 TTTTCCCTAATTAACTAAGCAACTCTT 57.417 29.630 0.00 0.00 38.79 2.85
8456 20372 9.582648 TTTCCCTAATTAACTAAGCAACTCTTT 57.417 29.630 0.00 0.00 36.25 2.52
8457 20373 9.582648 TTCCCTAATTAACTAAGCAACTCTTTT 57.417 29.630 0.00 0.00 36.25 2.27
8458 20374 9.227777 TCCCTAATTAACTAAGCAACTCTTTTC 57.772 33.333 0.00 0.00 36.25 2.29
8459 20375 9.232473 CCCTAATTAACTAAGCAACTCTTTTCT 57.768 33.333 0.00 0.00 36.25 2.52
8492 20408 4.298744 GCAGGAAGCAGGATAACATTTC 57.701 45.455 0.00 0.00 44.79 2.17
8493 20409 3.242870 GCAGGAAGCAGGATAACATTTCG 60.243 47.826 0.00 0.00 44.79 3.46
8494 20410 4.191544 CAGGAAGCAGGATAACATTTCGA 58.808 43.478 0.00 0.00 0.00 3.71
8495 20411 4.635765 CAGGAAGCAGGATAACATTTCGAA 59.364 41.667 0.00 0.00 0.00 3.71
8496 20412 5.123820 CAGGAAGCAGGATAACATTTCGAAA 59.876 40.000 13.91 13.91 0.00 3.46
8497 20413 5.355350 AGGAAGCAGGATAACATTTCGAAAG 59.645 40.000 16.80 10.65 0.00 2.62
8498 20414 5.354234 GGAAGCAGGATAACATTTCGAAAGA 59.646 40.000 16.80 2.12 39.20 2.52
8540 20456 2.413453 GGAGCGTCAACTGAATCAACTC 59.587 50.000 0.00 0.00 0.00 3.01
8544 20460 4.576463 AGCGTCAACTGAATCAACTCTTTT 59.424 37.500 0.00 0.00 0.00 2.27
8564 20480 4.605640 TTTTGGGAGCAATGGAAGAAAG 57.394 40.909 0.00 0.00 0.00 2.62
8571 20487 4.565652 GGAGCAATGGAAGAAAGTCCTACA 60.566 45.833 0.00 0.00 38.62 2.74
8574 20490 6.904626 AGCAATGGAAGAAAGTCCTACATAT 58.095 36.000 0.00 0.00 38.62 1.78
8579 20495 5.425217 TGGAAGAAAGTCCTACATATCAGCA 59.575 40.000 0.00 0.00 38.62 4.41
8581 20497 6.426328 GGAAGAAAGTCCTACATATCAGCATG 59.574 42.308 0.00 0.00 34.56 4.06
8582 20498 7.687837 GGAAGAAAGTCCTACATATCAGCATGA 60.688 40.741 0.00 0.00 41.73 3.07
8620 20536 1.213013 CGTGGGAGGAGTTCGACAG 59.787 63.158 0.00 0.00 0.00 3.51
8622 20538 2.182030 GGGAGGAGTTCGACAGCG 59.818 66.667 0.00 0.00 39.35 5.18
8623 20539 2.341101 GGGAGGAGTTCGACAGCGA 61.341 63.158 0.00 0.00 46.33 4.93
8645 20562 1.059584 TCAGCCACTGGTTCTTCCCA 61.060 55.000 0.00 0.00 34.77 4.37
8653 20570 0.696143 TGGTTCTTCCCAGGTGGTGA 60.696 55.000 0.00 0.00 34.77 4.02
8658 20575 0.035056 CTTCCCAGGTGGTGATGGTC 60.035 60.000 0.00 0.00 34.58 4.02
8681 20598 0.743688 GAGCTTCTGGCATCTCGAGA 59.256 55.000 19.19 19.19 44.79 4.04
8682 20599 0.746063 AGCTTCTGGCATCTCGAGAG 59.254 55.000 21.52 13.50 44.79 3.20
8692 20609 3.063180 GGCATCTCGAGAGTTTCACAATG 59.937 47.826 21.52 11.49 0.00 2.82
8695 20612 3.995199 TCTCGAGAGTTTCACAATGCTT 58.005 40.909 12.08 0.00 0.00 3.91
8702 20619 2.137523 GTTTCACAATGCTTGGCCAAG 58.862 47.619 36.58 36.58 41.24 3.61
8703 20620 1.702182 TTCACAATGCTTGGCCAAGA 58.298 45.000 42.96 28.99 40.79 3.02
8707 20624 1.610379 AATGCTTGGCCAAGACCCC 60.610 57.895 42.96 27.34 40.79 4.95
8752 20674 1.342275 CCCCAGATCCAGATGCCAAAA 60.342 52.381 0.00 0.00 0.00 2.44
8758 20680 6.494491 CCCAGATCCAGATGCCAAAATTAATA 59.506 38.462 0.00 0.00 0.00 0.98
8768 20690 8.517878 AGATGCCAAAATTAATATCTTCATCCG 58.482 33.333 12.42 0.00 0.00 4.18
8772 20694 8.462016 GCCAAAATTAATATCTTCATCCGCTAT 58.538 33.333 0.00 0.00 0.00 2.97
8773 20695 9.778993 CCAAAATTAATATCTTCATCCGCTATG 57.221 33.333 0.00 0.00 36.88 2.23
8777 20699 9.896645 AATTAATATCTTCATCCGCTATGATGT 57.103 29.630 7.38 2.24 44.13 3.06
8778 20700 8.932945 TTAATATCTTCATCCGCTATGATGTC 57.067 34.615 7.38 0.00 44.13 3.06
8779 20701 3.288809 TCTTCATCCGCTATGATGTCG 57.711 47.619 7.38 0.00 44.13 4.35
8780 20702 2.029918 TCTTCATCCGCTATGATGTCGG 60.030 50.000 7.38 1.55 44.13 4.79
8781 20703 0.038251 TCATCCGCTATGATGTCGGC 60.038 55.000 7.38 0.00 42.24 5.54
8782 20704 1.080501 ATCCGCTATGATGTCGGCG 60.081 57.895 0.00 0.00 45.97 6.46
8784 20706 2.027605 CGCTATGATGTCGGCGGT 59.972 61.111 7.21 0.00 43.25 5.68
8785 20707 2.302952 CGCTATGATGTCGGCGGTG 61.303 63.158 7.21 0.00 43.25 4.94
8786 20708 1.227263 GCTATGATGTCGGCGGTGT 60.227 57.895 7.21 0.00 0.00 4.16
8787 20709 0.031585 GCTATGATGTCGGCGGTGTA 59.968 55.000 7.21 0.00 0.00 2.90
8788 20710 1.930817 GCTATGATGTCGGCGGTGTAG 60.931 57.143 7.21 2.96 0.00 2.74
8789 20711 1.607148 CTATGATGTCGGCGGTGTAGA 59.393 52.381 7.21 0.00 0.00 2.59
8790 20712 0.385751 ATGATGTCGGCGGTGTAGAG 59.614 55.000 7.21 0.00 0.00 2.43
8791 20713 1.589196 GATGTCGGCGGTGTAGAGC 60.589 63.158 7.21 0.00 0.00 4.09
8792 20714 2.279502 GATGTCGGCGGTGTAGAGCA 62.280 60.000 7.21 0.00 34.54 4.26
8793 20715 1.884075 ATGTCGGCGGTGTAGAGCAA 61.884 55.000 7.21 0.00 34.54 3.91
8794 20716 1.805945 GTCGGCGGTGTAGAGCAAG 60.806 63.158 7.21 0.00 34.54 4.01
8795 20717 2.261671 CGGCGGTGTAGAGCAAGT 59.738 61.111 0.00 0.00 34.54 3.16
8796 20718 2.094659 CGGCGGTGTAGAGCAAGTG 61.095 63.158 0.00 0.00 34.54 3.16
8797 20719 1.292223 GGCGGTGTAGAGCAAGTGA 59.708 57.895 0.00 0.00 34.54 3.41
8798 20720 0.737715 GGCGGTGTAGAGCAAGTGAG 60.738 60.000 0.00 0.00 34.54 3.51
8799 20721 1.355066 GCGGTGTAGAGCAAGTGAGC 61.355 60.000 0.00 0.00 0.00 4.26
8800 20722 0.038251 CGGTGTAGAGCAAGTGAGCA 60.038 55.000 0.00 0.00 36.85 4.26
8801 20723 1.605457 CGGTGTAGAGCAAGTGAGCAA 60.605 52.381 0.00 0.00 36.85 3.91
8802 20724 1.801178 GGTGTAGAGCAAGTGAGCAAC 59.199 52.381 0.00 0.00 36.85 4.17
8803 20725 2.483876 GTGTAGAGCAAGTGAGCAACA 58.516 47.619 0.00 0.00 36.85 3.33
8804 20726 3.070018 GTGTAGAGCAAGTGAGCAACAT 58.930 45.455 0.00 0.00 36.85 2.71
8805 20727 3.499918 GTGTAGAGCAAGTGAGCAACATT 59.500 43.478 0.00 0.00 36.85 2.71
8806 20728 3.748048 TGTAGAGCAAGTGAGCAACATTC 59.252 43.478 0.00 0.00 36.85 2.67
8807 20729 2.854963 AGAGCAAGTGAGCAACATTCA 58.145 42.857 0.00 0.00 36.85 2.57
8808 20730 3.418995 AGAGCAAGTGAGCAACATTCAT 58.581 40.909 0.00 0.00 36.85 2.57
8809 20731 3.439476 AGAGCAAGTGAGCAACATTCATC 59.561 43.478 0.00 0.00 36.85 2.92
8810 20732 3.151554 AGCAAGTGAGCAACATTCATCA 58.848 40.909 0.00 0.00 36.85 3.07
8811 20733 3.762288 AGCAAGTGAGCAACATTCATCAT 59.238 39.130 0.00 0.00 36.85 2.45
8812 20734 4.945543 AGCAAGTGAGCAACATTCATCATA 59.054 37.500 0.00 0.00 36.85 2.15
8813 20735 5.066117 AGCAAGTGAGCAACATTCATCATAG 59.934 40.000 0.00 0.00 36.85 2.23
8814 20736 5.163683 GCAAGTGAGCAACATTCATCATAGT 60.164 40.000 0.00 0.00 0.00 2.12
8815 20737 6.484540 CAAGTGAGCAACATTCATCATAGTC 58.515 40.000 0.00 0.00 0.00 2.59
8816 20738 5.121811 AGTGAGCAACATTCATCATAGTCC 58.878 41.667 0.00 0.00 0.00 3.85
8817 20739 4.025396 GTGAGCAACATTCATCATAGTCCG 60.025 45.833 0.00 0.00 0.00 4.79
8818 20740 2.874701 AGCAACATTCATCATAGTCCGC 59.125 45.455 0.00 0.00 0.00 5.54
8819 20741 2.348872 GCAACATTCATCATAGTCCGCG 60.349 50.000 0.00 0.00 0.00 6.46
8820 20742 2.866156 CAACATTCATCATAGTCCGCGT 59.134 45.455 4.92 0.00 0.00 6.01
8821 20743 2.743938 ACATTCATCATAGTCCGCGTC 58.256 47.619 4.92 0.00 0.00 5.19
8822 20744 2.100749 ACATTCATCATAGTCCGCGTCA 59.899 45.455 4.92 0.00 0.00 4.35
8823 20745 2.951457 TTCATCATAGTCCGCGTCAA 57.049 45.000 4.92 0.00 0.00 3.18
8824 20746 2.951457 TCATCATAGTCCGCGTCAAA 57.049 45.000 4.92 0.00 0.00 2.69
8825 20747 3.452755 TCATCATAGTCCGCGTCAAAT 57.547 42.857 4.92 0.00 0.00 2.32
8826 20748 3.123050 TCATCATAGTCCGCGTCAAATG 58.877 45.455 4.92 3.86 0.00 2.32
8827 20749 2.951457 TCATAGTCCGCGTCAAATGA 57.049 45.000 4.92 6.36 0.00 2.57
8828 20750 3.239587 TCATAGTCCGCGTCAAATGAA 57.760 42.857 4.92 0.00 0.00 2.57
8829 20751 3.186909 TCATAGTCCGCGTCAAATGAAG 58.813 45.455 4.92 0.00 0.00 3.02
8830 20752 2.736144 TAGTCCGCGTCAAATGAAGT 57.264 45.000 4.92 0.00 0.00 3.01
8831 20753 1.429463 AGTCCGCGTCAAATGAAGTC 58.571 50.000 4.92 0.00 0.00 3.01
8832 20754 0.093026 GTCCGCGTCAAATGAAGTCG 59.907 55.000 4.92 3.14 0.00 4.18
8833 20755 1.225745 CCGCGTCAAATGAAGTCGC 60.226 57.895 4.92 6.78 42.78 5.19
8834 20756 1.491127 CGCGTCAAATGAAGTCGCA 59.509 52.632 14.49 0.00 45.77 5.10
8835 20757 0.110867 CGCGTCAAATGAAGTCGCAA 60.111 50.000 14.49 0.00 45.77 4.85
8836 20758 1.595609 GCGTCAAATGAAGTCGCAAG 58.404 50.000 10.75 0.00 45.01 4.01
8837 20759 1.595609 CGTCAAATGAAGTCGCAAGC 58.404 50.000 0.00 0.00 37.18 4.01
8838 20760 1.195448 CGTCAAATGAAGTCGCAAGCT 59.805 47.619 0.00 0.00 37.18 3.74
8839 20761 2.411748 CGTCAAATGAAGTCGCAAGCTA 59.588 45.455 0.00 0.00 37.18 3.32
8840 20762 3.722082 CGTCAAATGAAGTCGCAAGCTAC 60.722 47.826 0.00 0.00 37.18 3.58
8841 20763 3.433615 GTCAAATGAAGTCGCAAGCTACT 59.566 43.478 0.00 0.00 37.18 2.57
8842 20764 4.065088 TCAAATGAAGTCGCAAGCTACTT 58.935 39.130 11.17 11.17 38.62 2.24
8845 20767 2.080286 GAAGTCGCAAGCTACTTCCA 57.920 50.000 21.89 0.00 43.74 3.53
8846 20768 2.622436 GAAGTCGCAAGCTACTTCCAT 58.378 47.619 21.89 0.00 43.74 3.41
8847 20769 2.015736 AGTCGCAAGCTACTTCCATG 57.984 50.000 0.00 0.00 37.18 3.66
8848 20770 1.276421 AGTCGCAAGCTACTTCCATGT 59.724 47.619 0.00 0.00 37.18 3.21
8849 20771 2.496070 AGTCGCAAGCTACTTCCATGTA 59.504 45.455 0.00 0.00 37.18 2.29
8850 20772 2.860735 GTCGCAAGCTACTTCCATGTAG 59.139 50.000 0.00 0.00 41.91 2.74
8858 20780 2.472695 ACTTCCATGTAGCTTTCGCA 57.527 45.000 0.00 0.00 39.10 5.10
8859 20781 2.991250 ACTTCCATGTAGCTTTCGCAT 58.009 42.857 0.00 0.00 39.10 4.73
8860 20782 2.679837 ACTTCCATGTAGCTTTCGCATG 59.320 45.455 0.00 2.39 39.54 4.06
8861 20783 2.401583 TCCATGTAGCTTTCGCATGT 57.598 45.000 14.62 0.00 38.53 3.21
8862 20784 3.535280 TCCATGTAGCTTTCGCATGTA 57.465 42.857 14.62 2.27 38.53 2.29
8863 20785 3.194861 TCCATGTAGCTTTCGCATGTAC 58.805 45.455 14.62 0.00 38.53 2.90
8864 20786 2.287915 CCATGTAGCTTTCGCATGTACC 59.712 50.000 14.62 0.00 38.53 3.34
8865 20787 3.198068 CATGTAGCTTTCGCATGTACCT 58.802 45.455 0.00 0.00 39.10 3.08
8866 20788 2.616960 TGTAGCTTTCGCATGTACCTG 58.383 47.619 0.00 0.00 39.10 4.00
8867 20789 1.933853 GTAGCTTTCGCATGTACCTGG 59.066 52.381 0.00 0.00 39.10 4.45
8868 20790 0.613260 AGCTTTCGCATGTACCTGGA 59.387 50.000 0.00 0.00 39.10 3.86
8869 20791 0.727398 GCTTTCGCATGTACCTGGAC 59.273 55.000 0.00 0.00 35.78 4.02
8870 20792 1.943968 GCTTTCGCATGTACCTGGACA 60.944 52.381 0.00 0.64 35.78 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 8.299990 TCCAAATTCTAGAACCAAACTTTTGA 57.700 30.769 19.73 10.17 40.55 2.69
52 53 7.309194 CCAACTCCCACTGGTAAAATTTAGAAG 60.309 40.741 0.00 0.00 0.00 2.85
99 100 0.740737 CTGAATGCATTTCCCCCGTC 59.259 55.000 14.33 0.00 33.04 4.79
142 151 4.680237 TCGCTCAAGTGCACCCCG 62.680 66.667 14.63 9.37 0.00 5.73
242 259 3.673338 GCATACGCGCATACTATTTCTCA 59.327 43.478 5.73 0.00 0.00 3.27
244 261 3.649073 TGCATACGCGCATACTATTTCT 58.351 40.909 5.73 0.00 42.97 2.52
245 262 3.428870 ACTGCATACGCGCATACTATTTC 59.571 43.478 5.73 0.00 42.06 2.17
246 263 3.184379 CACTGCATACGCGCATACTATTT 59.816 43.478 5.73 0.00 42.06 1.40
247 264 2.731451 CACTGCATACGCGCATACTATT 59.269 45.455 5.73 0.00 42.06 1.73
248 265 2.288213 ACACTGCATACGCGCATACTAT 60.288 45.455 5.73 0.00 42.06 2.12
249 266 1.066454 ACACTGCATACGCGCATACTA 59.934 47.619 5.73 0.00 42.06 1.82
250 267 0.179111 ACACTGCATACGCGCATACT 60.179 50.000 5.73 0.00 42.06 2.12
263 280 0.953727 TTCACTTCCATGCACACTGC 59.046 50.000 0.00 0.00 45.29 4.40
291 312 8.671987 TTTTACCTTGATATTTTTCCCATCCA 57.328 30.769 0.00 0.00 0.00 3.41
299 320 9.435688 GCCACATCTTTTTACCTTGATATTTTT 57.564 29.630 0.00 0.00 0.00 1.94
300 321 8.815912 AGCCACATCTTTTTACCTTGATATTTT 58.184 29.630 0.00 0.00 0.00 1.82
309 330 4.640771 TCTCAGCCACATCTTTTTACCT 57.359 40.909 0.00 0.00 0.00 3.08
429 457 1.380515 CTGAAGCTCCCCGGAGAGA 60.381 63.158 18.48 2.68 44.53 3.10
432 460 2.726351 GGTCTGAAGCTCCCCGGAG 61.726 68.421 0.73 6.37 44.56 4.63
523 554 1.175983 TCCGGCCGCTTTGTTGAATT 61.176 50.000 22.85 0.00 0.00 2.17
526 557 2.033448 ATCCGGCCGCTTTGTTGA 59.967 55.556 22.85 10.43 0.00 3.18
527 558 1.982073 GAGATCCGGCCGCTTTGTTG 61.982 60.000 22.85 3.88 0.00 3.33
528 559 1.745489 GAGATCCGGCCGCTTTGTT 60.745 57.895 22.85 0.07 0.00 2.83
529 560 2.125106 GAGATCCGGCCGCTTTGT 60.125 61.111 22.85 4.34 0.00 2.83
540 571 4.434520 CCCTTAACTCGTTCTTGAGATCC 58.565 47.826 0.00 0.00 39.35 3.36
559 590 0.755686 GAACGAGATGGAGATGCCCT 59.244 55.000 0.00 0.00 34.97 5.19
579 610 0.537143 GCAATGGTGGTGACTGGTGA 60.537 55.000 0.00 0.00 0.00 4.02
580 611 0.538057 AGCAATGGTGGTGACTGGTG 60.538 55.000 0.00 0.00 33.11 4.17
581 612 0.250901 GAGCAATGGTGGTGACTGGT 60.251 55.000 0.00 0.00 35.00 4.00
582 613 0.037303 AGAGCAATGGTGGTGACTGG 59.963 55.000 0.00 0.00 35.00 4.00
583 614 1.538512 CAAGAGCAATGGTGGTGACTG 59.461 52.381 0.00 0.00 35.00 3.51
584 615 1.901591 CAAGAGCAATGGTGGTGACT 58.098 50.000 0.00 0.00 35.00 3.41
585 616 0.242017 GCAAGAGCAATGGTGGTGAC 59.758 55.000 0.00 0.00 41.58 3.67
661 706 4.785453 CTTGCTGGGAGCGGGACC 62.785 72.222 0.00 0.00 46.26 4.46
690 742 0.696501 ACCGCCTCCAAATGTTAGGT 59.303 50.000 0.00 0.00 32.67 3.08
691 743 1.379527 GACCGCCTCCAAATGTTAGG 58.620 55.000 0.00 0.00 0.00 2.69
692 744 1.006832 CGACCGCCTCCAAATGTTAG 58.993 55.000 0.00 0.00 0.00 2.34
693 745 1.022451 GCGACCGCCTCCAAATGTTA 61.022 55.000 2.55 0.00 34.56 2.41
694 746 2.332654 GCGACCGCCTCCAAATGTT 61.333 57.895 2.55 0.00 34.56 2.71
695 747 2.746277 GCGACCGCCTCCAAATGT 60.746 61.111 2.55 0.00 34.56 2.71
697 749 2.436646 CAGCGACCGCCTCCAAAT 60.437 61.111 11.03 0.00 43.17 2.32
717 793 1.743252 CGGCAGGCTCTTCACTTCC 60.743 63.158 0.00 0.00 0.00 3.46
757 848 0.671781 CCAACACCAAGGAGCTCTCG 60.672 60.000 14.64 2.09 0.00 4.04
815 907 6.292703 GCTGCTTAATTACCTGTATACAACCG 60.293 42.308 7.06 0.18 0.00 4.44
906 1006 5.595133 AGGAATCCGTTGTAGAAAACCAAAA 59.405 36.000 0.00 0.00 0.00 2.44
907 1007 5.009210 CAGGAATCCGTTGTAGAAAACCAAA 59.991 40.000 0.00 0.00 0.00 3.28
908 1008 4.517453 CAGGAATCCGTTGTAGAAAACCAA 59.483 41.667 0.00 0.00 0.00 3.67
909 1009 4.069304 CAGGAATCCGTTGTAGAAAACCA 58.931 43.478 0.00 0.00 0.00 3.67
1003 1117 4.544001 GACACCGGTCACCAACAA 57.456 55.556 2.59 0.00 43.73 2.83
1050 1164 3.449227 TACTCACCGGCGAGCAGG 61.449 66.667 19.41 12.54 36.42 4.85
1059 1173 3.502920 CTTCTGTAGCTTGTACTCACCG 58.497 50.000 0.00 0.00 0.00 4.94
1121 1235 1.188863 AAGGGCAATGTGAATGCTCC 58.811 50.000 0.00 0.00 45.61 4.70
1164 1278 1.815421 CTGCGCATTAAGCCGGTCT 60.815 57.895 12.24 0.00 41.38 3.85
1523 1637 0.458025 CTTGGTTAGCTCGACCCGTC 60.458 60.000 14.68 0.00 36.30 4.79
1524 1638 0.896940 TCTTGGTTAGCTCGACCCGT 60.897 55.000 14.68 0.00 36.30 5.28
1550 1664 2.301870 GACACATCCTCACCACCAAGTA 59.698 50.000 0.00 0.00 0.00 2.24
1559 1673 5.009010 AGTTGTTGATTTGACACATCCTCAC 59.991 40.000 0.00 0.00 0.00 3.51
1562 1676 5.132502 TGAGTTGTTGATTTGACACATCCT 58.867 37.500 0.00 0.00 0.00 3.24
1578 1692 7.415765 CCGACAATAGAGACTATCTTGAGTTGT 60.416 40.741 2.57 0.00 39.64 3.32
1581 1695 6.261381 GTCCGACAATAGAGACTATCTTGAGT 59.739 42.308 2.57 0.00 39.64 3.41
1660 1774 2.867429 AGCTTTGTGAACATATTGCGC 58.133 42.857 0.00 0.00 0.00 6.09
1753 1867 1.154205 AATGTGGCTACATCGCTCGC 61.154 55.000 16.73 0.00 46.54 5.03
1798 1912 4.058817 ACATTCTGAAGTTGTTCTCGGAC 58.941 43.478 0.00 0.00 33.38 4.79
1831 1945 0.615331 ATGATTGAGGTGGACACGCT 59.385 50.000 0.00 0.00 0.00 5.07
1833 1947 2.099141 ACATGATTGAGGTGGACACG 57.901 50.000 0.00 0.00 0.00 4.49
1984 2101 9.315363 CTCCCTCTGTTCCTAAATACAGTATAT 57.685 37.037 0.00 0.00 41.87 0.86
1985 2102 8.287350 ACTCCCTCTGTTCCTAAATACAGTATA 58.713 37.037 0.00 0.00 41.87 1.47
1987 2104 6.500336 ACTCCCTCTGTTCCTAAATACAGTA 58.500 40.000 0.00 0.00 41.87 2.74
1989 2106 5.941555 ACTCCCTCTGTTCCTAAATACAG 57.058 43.478 0.00 0.00 42.41 2.74
1990 2107 9.144298 CTTATACTCCCTCTGTTCCTAAATACA 57.856 37.037 0.00 0.00 0.00 2.29
1991 2108 9.364653 TCTTATACTCCCTCTGTTCCTAAATAC 57.635 37.037 0.00 0.00 0.00 1.89
1993 2110 9.453830 AATCTTATACTCCCTCTGTTCCTAAAT 57.546 33.333 0.00 0.00 0.00 1.40
1994 2111 8.855804 AATCTTATACTCCCTCTGTTCCTAAA 57.144 34.615 0.00 0.00 0.00 1.85
1997 2114 9.453830 AATAAATCTTATACTCCCTCTGTTCCT 57.546 33.333 0.00 0.00 0.00 3.36
2025 2142 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
2026 2143 8.703743 AGAGCAAAATGAGTGAATCTATACTCT 58.296 33.333 0.00 0.00 42.86 3.24
2027 2144 8.763356 CAGAGCAAAATGAGTGAATCTATACTC 58.237 37.037 0.00 0.00 42.77 2.59
2028 2145 8.263640 ACAGAGCAAAATGAGTGAATCTATACT 58.736 33.333 0.00 0.00 0.00 2.12
2029 2146 8.430801 ACAGAGCAAAATGAGTGAATCTATAC 57.569 34.615 0.00 0.00 0.00 1.47
2031 2148 9.053840 CATACAGAGCAAAATGAGTGAATCTAT 57.946 33.333 0.00 0.00 0.00 1.98
2032 2149 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
2033 2150 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
2034 2151 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
2035 2152 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
2036 2153 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
2037 2154 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
2038 2155 6.036517 GGACTACATACAGAGCAAAATGAGTG 59.963 42.308 0.00 0.00 0.00 3.51
2039 2156 6.109359 GGACTACATACAGAGCAAAATGAGT 58.891 40.000 0.00 0.00 0.00 3.41
2040 2157 6.108687 TGGACTACATACAGAGCAAAATGAG 58.891 40.000 0.00 0.00 0.00 2.90
2041 2158 6.048732 TGGACTACATACAGAGCAAAATGA 57.951 37.500 0.00 0.00 0.00 2.57
2042 2159 6.932356 ATGGACTACATACAGAGCAAAATG 57.068 37.500 0.00 0.00 38.26 2.32
2043 2160 7.712639 CACTATGGACTACATACAGAGCAAAAT 59.287 37.037 0.00 0.00 41.03 1.82
2044 2161 7.041721 CACTATGGACTACATACAGAGCAAAA 58.958 38.462 0.00 0.00 41.03 2.44
2045 2162 6.406961 CCACTATGGACTACATACAGAGCAAA 60.407 42.308 0.00 0.00 40.96 3.68
2046 2163 5.069119 CCACTATGGACTACATACAGAGCAA 59.931 44.000 0.00 0.00 40.96 3.91
2047 2164 4.584743 CCACTATGGACTACATACAGAGCA 59.415 45.833 0.00 0.00 40.96 4.26
2048 2165 4.827835 TCCACTATGGACTACATACAGAGC 59.172 45.833 0.00 0.00 42.67 4.09
2307 2714 8.618677 CAGCTTTCTAATATCTTGCTTCATCAA 58.381 33.333 0.00 0.00 0.00 2.57
2506 2923 9.241317 CTAAATATAGTTTTGCATTGGAAGCTG 57.759 33.333 0.00 0.00 0.00 4.24
2585 4164 7.760794 TGATAAACAAGGAATGAATGCATGAAC 59.239 33.333 0.00 0.00 34.26 3.18
3009 5185 2.083774 CACGCCACCACATTTCTGTAT 58.916 47.619 0.00 0.00 33.14 2.29
3323 5502 6.327934 GTTTACGAGAGCACTAAAGTATCCA 58.672 40.000 0.00 0.00 0.00 3.41
3360 5539 1.774254 TCCTTTCTTCTCCACAGGCAA 59.226 47.619 0.00 0.00 0.00 4.52
3505 5715 4.644103 TGGATAGCTAACCTACGAACAC 57.356 45.455 19.69 0.00 0.00 3.32
3539 5752 1.540797 GCCAAATGGTTTTGCTGCTCA 60.541 47.619 0.00 0.00 40.77 4.26
3548 5761 2.916640 CTTGTGTTGGCCAAATGGTTT 58.083 42.857 22.47 0.00 37.57 3.27
3741 5960 4.100035 TGGGAGCTCACTAATATCTGTGTG 59.900 45.833 18.70 6.77 35.82 3.82
3809 6028 5.163663 CGGCAATCCTTTTATCTTGCAGTAA 60.164 40.000 8.21 0.00 44.41 2.24
3810 6029 4.335315 CGGCAATCCTTTTATCTTGCAGTA 59.665 41.667 8.21 0.00 44.41 2.74
3826 6045 2.873133 ACTAGTACTCTGCGGCAATC 57.127 50.000 3.44 0.00 0.00 2.67
3833 6052 3.626670 TCCTTAGCGAACTAGTACTCTGC 59.373 47.826 0.00 0.00 0.00 4.26
3847 6066 2.000447 AGCGCTTAAGTTTCCTTAGCG 59.000 47.619 2.64 10.12 44.45 4.26
3867 6086 4.776322 CTCCCCGACCATGCGCAA 62.776 66.667 17.11 0.00 0.00 4.85
3893 6112 2.682856 CGGCACTGCTATACCAACATTT 59.317 45.455 0.00 0.00 0.00 2.32
3962 6196 4.082136 ACGAAGGTAGAGAATTCACCACTC 60.082 45.833 14.11 9.58 34.62 3.51
4053 6287 5.886992 ACCCACAAAAGTTTTCTTAGAACG 58.113 37.500 0.00 0.00 39.48 3.95
4346 6580 0.837272 CCCCTGGTCGTATCCACAAT 59.163 55.000 0.00 0.00 33.55 2.71
4409 6643 2.173356 CCAGAAAGGTGCATCTATCCCA 59.827 50.000 0.00 0.00 0.00 4.37
4439 6673 4.845580 AGGCTCCGCATGCTTCCG 62.846 66.667 17.13 0.00 0.00 4.30
4462 6696 2.398036 CGGTGCCGAACGTAATGC 59.602 61.111 4.35 0.00 42.83 3.56
4478 6712 3.326747 CTTCTTGTTCAAGTACCTCCCG 58.673 50.000 11.52 0.00 0.00 5.14
4482 6716 4.327680 GCATCCTTCTTGTTCAAGTACCT 58.672 43.478 11.52 0.00 0.00 3.08
4559 6799 2.389059 CAGTCCATATCAGCGAAGACG 58.611 52.381 0.00 0.00 42.93 4.18
4569 6809 0.109342 CCACCCCAGCAGTCCATATC 59.891 60.000 0.00 0.00 0.00 1.63
4640 6910 1.065418 GGACGGTTGGGATGATTGTCT 60.065 52.381 0.00 0.00 0.00 3.41
4670 6940 4.320456 CCACCACGCCTGCTGAGT 62.320 66.667 0.00 0.00 0.00 3.41
4674 6944 3.005539 ATCTCCACCACGCCTGCT 61.006 61.111 0.00 0.00 0.00 4.24
4702 6980 8.349983 ACTAAGTACAATTAACAAAAGCCTGTG 58.650 33.333 0.00 0.00 0.00 3.66
4855 7426 2.028112 TGGATTCTTCGTTGTCCTCCTG 60.028 50.000 0.00 0.00 0.00 3.86
4856 7427 2.234908 CTGGATTCTTCGTTGTCCTCCT 59.765 50.000 0.00 0.00 0.00 3.69
4875 7461 1.202687 TGTTCTGTCAGTTGGGAGCTG 60.203 52.381 0.00 0.00 35.43 4.24
4886 7472 4.581824 AGTTACGTACCTCTTGTTCTGTCA 59.418 41.667 0.00 0.00 0.00 3.58
4904 7490 0.320697 ACCCGAGAGCACCAAGTTAC 59.679 55.000 0.00 0.00 0.00 2.50
4906 7492 0.250338 GAACCCGAGAGCACCAAGTT 60.250 55.000 0.00 0.00 0.00 2.66
4907 7493 1.371558 GAACCCGAGAGCACCAAGT 59.628 57.895 0.00 0.00 0.00 3.16
4908 7494 1.376037 GGAACCCGAGAGCACCAAG 60.376 63.158 0.00 0.00 0.00 3.61
4909 7495 2.747686 GGAACCCGAGAGCACCAA 59.252 61.111 0.00 0.00 0.00 3.67
4932 7518 7.931407 TGTTTCTTCGTTGTGCATATATAGGAT 59.069 33.333 0.00 0.00 0.00 3.24
4933 7519 7.269316 TGTTTCTTCGTTGTGCATATATAGGA 58.731 34.615 0.00 0.00 0.00 2.94
4937 7523 7.377766 ACTTGTTTCTTCGTTGTGCATATAT 57.622 32.000 0.00 0.00 0.00 0.86
4938 7524 6.795098 ACTTGTTTCTTCGTTGTGCATATA 57.205 33.333 0.00 0.00 0.00 0.86
4939 7525 5.689383 ACTTGTTTCTTCGTTGTGCATAT 57.311 34.783 0.00 0.00 0.00 1.78
4941 7527 4.370364 AACTTGTTTCTTCGTTGTGCAT 57.630 36.364 0.00 0.00 0.00 3.96
4943 7529 4.262976 CAGAAACTTGTTTCTTCGTTGTGC 59.737 41.667 21.72 0.00 39.10 4.57
4944 7530 5.627172 TCAGAAACTTGTTTCTTCGTTGTG 58.373 37.500 21.72 12.33 39.10 3.33
4946 7532 7.740519 AATTCAGAAACTTGTTTCTTCGTTG 57.259 32.000 21.72 13.45 39.10 4.10
4949 7535 7.702348 AGGAAAATTCAGAAACTTGTTTCTTCG 59.298 33.333 21.72 13.94 39.10 3.79
4950 7536 8.932945 AGGAAAATTCAGAAACTTGTTTCTTC 57.067 30.769 21.72 16.17 39.10 2.87
4951 7537 8.531146 TGAGGAAAATTCAGAAACTTGTTTCTT 58.469 29.630 21.72 9.88 39.10 2.52
4952 7538 7.976175 GTGAGGAAAATTCAGAAACTTGTTTCT 59.024 33.333 19.42 19.42 41.61 2.52
4953 7539 7.976175 AGTGAGGAAAATTCAGAAACTTGTTTC 59.024 33.333 15.95 15.95 0.00 2.78
4955 7541 7.340487 AGAGTGAGGAAAATTCAGAAACTTGTT 59.660 33.333 0.00 0.00 0.00 2.83
4956 7542 6.830838 AGAGTGAGGAAAATTCAGAAACTTGT 59.169 34.615 0.00 0.00 0.00 3.16
4986 7797 8.348507 CAAGAGATTGATAAGGTAAATGGAAGC 58.651 37.037 0.00 0.00 0.00 3.86
4987 7798 9.401058 ACAAGAGATTGATAAGGTAAATGGAAG 57.599 33.333 0.00 0.00 0.00 3.46
5015 7826 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5016 7827 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
5017 7828 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5018 7829 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
5019 7830 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
5020 7831 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
5021 7832 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
5151 7962 9.916360 ACTTCCTCCGTTCCTAAATATTTATTT 57.084 29.630 8.34 1.54 39.14 1.40
5154 7965 9.991906 CATACTTCCTCCGTTCCTAAATATTTA 57.008 33.333 7.66 7.66 0.00 1.40
5155 7966 8.491958 ACATACTTCCTCCGTTCCTAAATATTT 58.508 33.333 5.89 5.89 0.00 1.40
5156 7967 8.030913 ACATACTTCCTCCGTTCCTAAATATT 57.969 34.615 0.00 0.00 0.00 1.28
5157 7968 7.613551 ACATACTTCCTCCGTTCCTAAATAT 57.386 36.000 0.00 0.00 0.00 1.28
5158 7969 7.255242 CGTACATACTTCCTCCGTTCCTAAATA 60.255 40.741 0.00 0.00 0.00 1.40
5159 7970 5.952347 ACATACTTCCTCCGTTCCTAAAT 57.048 39.130 0.00 0.00 0.00 1.40
5160 7971 5.163622 CGTACATACTTCCTCCGTTCCTAAA 60.164 44.000 0.00 0.00 0.00 1.85
5161 7972 4.336433 CGTACATACTTCCTCCGTTCCTAA 59.664 45.833 0.00 0.00 0.00 2.69
5162 7973 3.879295 CGTACATACTTCCTCCGTTCCTA 59.121 47.826 0.00 0.00 0.00 2.94
5163 7974 2.686915 CGTACATACTTCCTCCGTTCCT 59.313 50.000 0.00 0.00 0.00 3.36
5164 7975 2.424956 ACGTACATACTTCCTCCGTTCC 59.575 50.000 0.00 0.00 0.00 3.62
5165 7976 3.772060 ACGTACATACTTCCTCCGTTC 57.228 47.619 0.00 0.00 0.00 3.95
5166 7977 4.265073 ACTACGTACATACTTCCTCCGTT 58.735 43.478 0.00 0.00 0.00 4.44
5167 7978 3.873952 GACTACGTACATACTTCCTCCGT 59.126 47.826 0.00 0.00 0.00 4.69
5168 7979 3.249559 GGACTACGTACATACTTCCTCCG 59.750 52.174 0.00 0.00 0.00 4.63
5169 7980 3.567585 GGGACTACGTACATACTTCCTCC 59.432 52.174 0.00 0.00 0.00 4.30
5170 7981 4.202441 TGGGACTACGTACATACTTCCTC 58.798 47.826 0.00 0.00 0.00 3.71
5171 7982 4.240881 TGGGACTACGTACATACTTCCT 57.759 45.455 0.00 0.00 0.00 3.36
5172 7983 4.581824 TCATGGGACTACGTACATACTTCC 59.418 45.833 0.00 0.00 0.00 3.46
5173 7984 5.762825 TCATGGGACTACGTACATACTTC 57.237 43.478 0.00 0.00 0.00 3.01
5174 7985 5.655532 ACTTCATGGGACTACGTACATACTT 59.344 40.000 0.00 0.00 0.00 2.24
5175 7986 5.198965 ACTTCATGGGACTACGTACATACT 58.801 41.667 0.00 0.00 0.00 2.12
5176 7987 5.511234 ACTTCATGGGACTACGTACATAC 57.489 43.478 0.00 0.00 0.00 2.39
5177 7988 5.653330 TGAACTTCATGGGACTACGTACATA 59.347 40.000 0.00 0.00 0.00 2.29
5178 7989 4.464951 TGAACTTCATGGGACTACGTACAT 59.535 41.667 0.00 0.00 0.00 2.29
5183 7994 2.259618 CGTGAACTTCATGGGACTACG 58.740 52.381 3.33 0.00 29.96 3.51
5204 8015 4.143333 AGGAATCCGACGCGTGGG 62.143 66.667 31.78 31.78 0.00 4.61
5208 8019 1.878522 CTTGGAGGAATCCGACGCG 60.879 63.158 3.53 3.53 0.00 6.01
5246 8057 9.291664 GTACGGGTAGAAGTATATAGTACGTAG 57.708 40.741 0.00 0.00 33.42 3.51
5250 8061 7.063544 CCACGTACGGGTAGAAGTATATAGTAC 59.936 44.444 21.06 0.00 0.00 2.73
5251 8062 7.039293 TCCACGTACGGGTAGAAGTATATAGTA 60.039 40.741 21.06 0.00 0.00 1.82
5256 8067 4.415881 TCCACGTACGGGTAGAAGTATA 57.584 45.455 21.06 0.00 0.00 1.47
5307 8138 9.991906 CATATTTTAGGGAGCATCAATCAAAAT 57.008 29.630 0.00 0.00 36.25 1.82
5308 8139 9.199645 TCATATTTTAGGGAGCATCAATCAAAA 57.800 29.630 0.00 0.00 36.25 2.44
5309 8140 8.765488 TCATATTTTAGGGAGCATCAATCAAA 57.235 30.769 0.00 0.00 36.25 2.69
5310 8141 8.000709 ACTCATATTTTAGGGAGCATCAATCAA 58.999 33.333 0.00 0.00 36.25 2.57
5312 8143 7.992754 ACTCATATTTTAGGGAGCATCAATC 57.007 36.000 0.00 0.00 36.25 2.67
5313 8144 7.449704 GGAACTCATATTTTAGGGAGCATCAAT 59.550 37.037 0.00 0.00 36.25 2.57
5322 8153 7.122650 TGCTTTCAAGGAACTCATATTTTAGGG 59.877 37.037 0.00 0.00 38.49 3.53
5331 8162 7.530426 AAACTATTGCTTTCAAGGAACTCAT 57.470 32.000 0.00 0.00 38.49 2.90
5332 8163 6.959639 AAACTATTGCTTTCAAGGAACTCA 57.040 33.333 0.00 0.00 38.49 3.41
5354 8185 1.377987 CGCGGGAGGGGATCAAAAA 60.378 57.895 0.00 0.00 39.41 1.94
5355 8186 2.270850 CGCGGGAGGGGATCAAAA 59.729 61.111 0.00 0.00 39.41 2.44
5356 8187 2.685743 TCGCGGGAGGGGATCAAA 60.686 61.111 6.13 0.00 43.86 2.69
5357 8188 3.467226 GTCGCGGGAGGGGATCAA 61.467 66.667 6.13 0.00 43.86 2.57
5362 8193 4.936081 ATAGGGTCGCGGGAGGGG 62.936 72.222 6.13 0.00 43.86 4.79
5363 8194 3.303928 GATAGGGTCGCGGGAGGG 61.304 72.222 6.13 0.00 45.26 4.30
5364 8195 3.303928 GGATAGGGTCGCGGGAGG 61.304 72.222 6.13 0.00 0.00 4.30
5365 8196 3.303928 GGGATAGGGTCGCGGGAG 61.304 72.222 6.13 0.00 0.00 4.30
5366 8197 4.928140 GGGGATAGGGTCGCGGGA 62.928 72.222 6.13 0.00 40.50 5.14
5367 8198 4.936081 AGGGGATAGGGTCGCGGG 62.936 72.222 6.13 0.00 40.50 6.13
5368 8199 3.303928 GAGGGGATAGGGTCGCGG 61.304 72.222 6.13 0.00 40.50 6.46
5369 8200 3.303928 GGAGGGGATAGGGTCGCG 61.304 72.222 0.00 0.00 40.50 5.87
5370 8201 2.923568 GGGAGGGGATAGGGTCGC 60.924 72.222 0.00 0.00 38.96 5.19
5371 8202 2.600769 CGGGAGGGGATAGGGTCG 60.601 72.222 0.00 0.00 0.00 4.79
5372 8203 2.923568 GCGGGAGGGGATAGGGTC 60.924 72.222 0.00 0.00 0.00 4.46
5373 8204 4.936081 CGCGGGAGGGGATAGGGT 62.936 72.222 0.00 0.00 39.41 4.34
5408 8239 2.190578 GTTGAGATGCCCTCCCGG 59.809 66.667 0.00 0.00 41.25 5.73
5409 8240 2.190578 GGTTGAGATGCCCTCCCG 59.809 66.667 1.41 0.00 41.25 5.14
5410 8241 1.529309 GAGGTTGAGATGCCCTCCC 59.471 63.158 0.00 0.00 41.25 4.30
5412 8243 1.144936 CGGAGGTTGAGATGCCCTC 59.855 63.158 0.00 0.00 43.35 4.30
5413 8244 3.036429 GCGGAGGTTGAGATGCCCT 62.036 63.158 0.00 0.00 0.00 5.19
5414 8245 2.514824 GCGGAGGTTGAGATGCCC 60.515 66.667 0.00 0.00 0.00 5.36
5415 8246 2.514824 GGCGGAGGTTGAGATGCC 60.515 66.667 0.00 0.00 35.04 4.40
5416 8247 2.892425 CGGCGGAGGTTGAGATGC 60.892 66.667 0.00 0.00 0.00 3.91
5417 8248 2.892425 GCGGCGGAGGTTGAGATG 60.892 66.667 9.78 0.00 0.00 2.90
5418 8249 4.162690 GGCGGCGGAGGTTGAGAT 62.163 66.667 9.78 0.00 0.00 2.75
5431 8262 4.785453 GAGGAGGTTGGCTGGCGG 62.785 72.222 0.00 0.00 0.00 6.13
5432 8263 4.785453 GGAGGAGGTTGGCTGGCG 62.785 72.222 0.00 0.00 0.00 5.69
5433 8264 3.334054 AGGAGGAGGTTGGCTGGC 61.334 66.667 0.00 0.00 0.00 4.85
5434 8265 2.674220 GGAGGAGGAGGTTGGCTGG 61.674 68.421 0.00 0.00 0.00 4.85
5435 8266 2.674220 GGGAGGAGGAGGTTGGCTG 61.674 68.421 0.00 0.00 0.00 4.85
5436 8267 2.285743 GGGAGGAGGAGGTTGGCT 60.286 66.667 0.00 0.00 0.00 4.75
5437 8268 2.610859 TGGGAGGAGGAGGTTGGC 60.611 66.667 0.00 0.00 0.00 4.52
5438 8269 2.660064 CGTGGGAGGAGGAGGTTGG 61.660 68.421 0.00 0.00 0.00 3.77
5439 8270 2.982130 CGTGGGAGGAGGAGGTTG 59.018 66.667 0.00 0.00 0.00 3.77
5440 8271 3.003763 GCGTGGGAGGAGGAGGTT 61.004 66.667 0.00 0.00 0.00 3.50
5502 8333 3.305177 TAACGAGAAGCCCCACCGC 62.305 63.158 0.00 0.00 0.00 5.68
5503 8334 1.447314 GTAACGAGAAGCCCCACCG 60.447 63.158 0.00 0.00 0.00 4.94
5504 8335 0.108281 GAGTAACGAGAAGCCCCACC 60.108 60.000 0.00 0.00 0.00 4.61
5505 8336 0.108281 GGAGTAACGAGAAGCCCCAC 60.108 60.000 0.00 0.00 0.00 4.61
5506 8337 1.601419 CGGAGTAACGAGAAGCCCCA 61.601 60.000 0.00 0.00 35.47 4.96
5507 8338 1.141234 CGGAGTAACGAGAAGCCCC 59.859 63.158 0.00 0.00 35.47 5.80
5508 8339 1.518792 GCGGAGTAACGAGAAGCCC 60.519 63.158 0.00 0.00 35.47 5.19
5509 8340 0.802607 CTGCGGAGTAACGAGAAGCC 60.803 60.000 0.00 0.00 35.47 4.35
5510 8341 0.802607 CCTGCGGAGTAACGAGAAGC 60.803 60.000 2.36 0.00 35.47 3.86
5511 8342 0.802607 GCCTGCGGAGTAACGAGAAG 60.803 60.000 2.36 0.00 35.47 2.85
5512 8343 1.214589 GCCTGCGGAGTAACGAGAA 59.785 57.895 2.36 0.00 35.47 2.87
5513 8344 1.529152 TTGCCTGCGGAGTAACGAGA 61.529 55.000 2.36 0.00 35.47 4.04
5514 8345 1.078759 CTTGCCTGCGGAGTAACGAG 61.079 60.000 2.36 0.00 35.47 4.18
5515 8346 1.080093 CTTGCCTGCGGAGTAACGA 60.080 57.895 2.36 0.00 35.47 3.85
5516 8347 2.100631 CCTTGCCTGCGGAGTAACG 61.101 63.158 2.36 0.00 0.00 3.18
5517 8348 1.745489 CCCTTGCCTGCGGAGTAAC 60.745 63.158 2.36 0.00 0.00 2.50
5518 8349 1.899437 CTCCCTTGCCTGCGGAGTAA 61.899 60.000 2.36 0.00 38.72 2.24
5519 8350 2.284331 TCCCTTGCCTGCGGAGTA 60.284 61.111 2.36 0.00 0.00 2.59
5520 8351 3.710722 CTCCCTTGCCTGCGGAGT 61.711 66.667 2.36 0.00 38.72 3.85
5600 8431 4.284550 AGCCACCACCAACCGCAT 62.285 61.111 0.00 0.00 0.00 4.73
5603 8434 4.619227 ACGAGCCACCACCAACCG 62.619 66.667 0.00 0.00 0.00 4.44
5640 8471 4.181010 CCCAGCCCAGATCCACCG 62.181 72.222 0.00 0.00 0.00 4.94
5672 8503 2.507854 CCCGATGACCCATAGCCGT 61.508 63.158 0.00 0.00 0.00 5.68
5678 8509 4.175337 CCACGCCCGATGACCCAT 62.175 66.667 0.00 0.00 0.00 4.00
6196 9027 2.046988 CCGAGCATCACCACAGCA 60.047 61.111 0.00 0.00 33.17 4.41
6537 9372 2.820037 GCTTAGTCCTGCGGCACC 60.820 66.667 0.00 0.00 0.00 5.01
6598 9433 2.425592 CTCGGTCCTGCAACACCA 59.574 61.111 13.00 1.61 32.33 4.17
6723 9560 0.250295 CCCAACCAAAGAGACGAGCA 60.250 55.000 0.00 0.00 0.00 4.26
6809 9646 2.736995 CCGAGAGAACCGCGCAAA 60.737 61.111 8.75 0.00 36.73 3.68
6828 9665 1.529010 CACCAAGCAACAGCCTCCA 60.529 57.895 0.00 0.00 0.00 3.86
6884 9721 2.188829 ACCGAACGTCACACCTCGA 61.189 57.895 6.64 0.00 33.13 4.04
6887 9724 2.420043 CCACCGAACGTCACACCT 59.580 61.111 0.00 0.00 0.00 4.00
7019 9859 5.340360 CCAATCCAAGGATTAGAGTTTCCCT 60.340 44.000 13.65 0.00 42.30 4.20
7065 9905 1.480954 GGCGACTTCAGGAAGGATACA 59.519 52.381 13.19 0.00 42.53 2.29
7100 9940 1.134818 TGAAGCCGCATATGACGAACT 60.135 47.619 17.40 12.41 0.00 3.01
7171 10018 1.265095 GCACATCCAAGGCATGATACG 59.735 52.381 0.00 0.00 0.00 3.06
7186 10033 1.250328 CACACACATCCAAGGCACAT 58.750 50.000 0.00 0.00 0.00 3.21
7191 10038 3.191162 CACCATAACACACACATCCAAGG 59.809 47.826 0.00 0.00 0.00 3.61
7192 10039 3.191162 CCACCATAACACACACATCCAAG 59.809 47.826 0.00 0.00 0.00 3.61
7193 10040 3.153130 CCACCATAACACACACATCCAA 58.847 45.455 0.00 0.00 0.00 3.53
7194 10041 2.789213 CCACCATAACACACACATCCA 58.211 47.619 0.00 0.00 0.00 3.41
7195 10042 1.472480 GCCACCATAACACACACATCC 59.528 52.381 0.00 0.00 0.00 3.51
7196 10043 1.130373 CGCCACCATAACACACACATC 59.870 52.381 0.00 0.00 0.00 3.06
7197 10044 1.164411 CGCCACCATAACACACACAT 58.836 50.000 0.00 0.00 0.00 3.21
7200 10047 1.511318 GCACGCCACCATAACACACA 61.511 55.000 0.00 0.00 0.00 3.72
7208 10055 2.938086 TACAGACGCACGCCACCAT 61.938 57.895 0.00 0.00 0.00 3.55
7289 10136 2.750301 AAAGAAAACGCACGAGGAAC 57.250 45.000 0.00 0.00 0.00 3.62
7290 10137 3.127203 TGAAAAAGAAAACGCACGAGGAA 59.873 39.130 0.00 0.00 0.00 3.36
7291 10138 2.678836 TGAAAAAGAAAACGCACGAGGA 59.321 40.909 0.00 0.00 0.00 3.71
7292 10139 3.035942 CTGAAAAAGAAAACGCACGAGG 58.964 45.455 0.00 0.00 0.00 4.63
7293 10140 2.464016 GCTGAAAAAGAAAACGCACGAG 59.536 45.455 0.00 0.00 0.00 4.18
7294 10141 2.446282 GCTGAAAAAGAAAACGCACGA 58.554 42.857 0.00 0.00 0.00 4.35
7295 10142 1.516864 GGCTGAAAAAGAAAACGCACG 59.483 47.619 0.00 0.00 0.00 5.34
7296 10143 1.858458 GGGCTGAAAAAGAAAACGCAC 59.142 47.619 0.00 0.00 0.00 5.34
7297 10144 1.535015 CGGGCTGAAAAAGAAAACGCA 60.535 47.619 0.00 0.00 0.00 5.24
7298 10145 1.128513 CGGGCTGAAAAAGAAAACGC 58.871 50.000 0.00 0.00 0.00 4.84
7299 10146 2.381589 GTCGGGCTGAAAAAGAAAACG 58.618 47.619 0.00 0.00 0.00 3.60
7300 10147 2.032426 TCGTCGGGCTGAAAAAGAAAAC 59.968 45.455 0.00 0.00 0.00 2.43
7301 10148 2.032426 GTCGTCGGGCTGAAAAAGAAAA 59.968 45.455 0.00 0.00 0.00 2.29
7303 10150 1.223187 GTCGTCGGGCTGAAAAAGAA 58.777 50.000 0.00 0.00 0.00 2.52
7305 10152 0.942410 TCGTCGTCGGGCTGAAAAAG 60.942 55.000 0.00 0.00 37.69 2.27
7345 10192 1.291184 CTCCGCTGCATCAACGTCAA 61.291 55.000 0.00 0.00 0.00 3.18
7346 10193 1.737735 CTCCGCTGCATCAACGTCA 60.738 57.895 0.00 0.00 0.00 4.35
7493 10506 1.342474 TGCGATTCTTCCTCCTCCTCT 60.342 52.381 0.00 0.00 0.00 3.69
7502 10515 1.092345 GGTCTGCCTGCGATTCTTCC 61.092 60.000 0.00 0.00 0.00 3.46
7529 10542 2.691409 TAGTATTGCACCAGACCTGC 57.309 50.000 0.00 0.00 35.03 4.85
7578 10591 6.342906 ACTAATAACCATTCGATTCGTGGAA 58.657 36.000 19.21 9.35 36.82 3.53
7580 10630 6.129273 CGTACTAATAACCATTCGATTCGTGG 60.129 42.308 12.68 12.68 38.96 4.94
7879 19619 1.005340 GAGCCATCTTCAGAAGCACG 58.995 55.000 5.15 0.00 31.98 5.34
7880 19620 2.008329 CTGAGCCATCTTCAGAAGCAC 58.992 52.381 5.15 0.00 33.65 4.40
7923 19682 0.032403 TCAACCGACCACTAACCACG 59.968 55.000 0.00 0.00 0.00 4.94
8008 19775 0.537143 AAAGACCTGGCGCATCACAA 60.537 50.000 10.83 0.00 0.00 3.33
8024 19791 3.261981 ACATAGACTACGGGGCAAAAG 57.738 47.619 0.00 0.00 0.00 2.27
8048 19815 5.150715 TGTCTATGCCTGATTGATCTAGGT 58.849 41.667 0.00 0.00 34.06 3.08
8057 19824 2.200081 ACCCACTGTCTATGCCTGATT 58.800 47.619 0.00 0.00 0.00 2.57
8073 19840 7.566658 AAATGGAAAGGATAATTCAAACCCA 57.433 32.000 0.00 0.00 0.00 4.51
8112 19897 6.084326 TCAAACAAAGAAATAAGCAGGTCC 57.916 37.500 0.00 0.00 0.00 4.46
8116 19901 6.360681 CGTTCCTCAAACAAAGAAATAAGCAG 59.639 38.462 0.00 0.00 37.77 4.24
8119 19904 6.856426 GTCCGTTCCTCAAACAAAGAAATAAG 59.144 38.462 0.00 0.00 37.77 1.73
8122 19907 4.887655 AGTCCGTTCCTCAAACAAAGAAAT 59.112 37.500 0.00 0.00 37.77 2.17
8220 20025 9.036671 GTACTAGAAGGAAAGTATGAATTCAGC 57.963 37.037 14.54 9.24 31.25 4.26
8276 20192 4.323417 TGCAACTTGTATGTCTTCCGATT 58.677 39.130 0.00 0.00 0.00 3.34
8304 20220 7.523293 TCTCCTGATACTTTCATTTTGCAAA 57.477 32.000 8.05 8.05 32.72 3.68
8307 20223 8.816640 TTTTTCTCCTGATACTTTCATTTTGC 57.183 30.769 0.00 0.00 32.72 3.68
8341 20257 9.746711 CTGCATTTAACTCTATATATTGTTCGC 57.253 33.333 0.00 0.00 0.00 4.70
8349 20265 9.325198 CACAACCACTGCATTTAACTCTATATA 57.675 33.333 0.00 0.00 0.00 0.86
8350 20266 8.046708 TCACAACCACTGCATTTAACTCTATAT 58.953 33.333 0.00 0.00 0.00 0.86
8351 20267 7.333423 GTCACAACCACTGCATTTAACTCTATA 59.667 37.037 0.00 0.00 0.00 1.31
8352 20268 6.149474 GTCACAACCACTGCATTTAACTCTAT 59.851 38.462 0.00 0.00 0.00 1.98
8353 20269 5.468746 GTCACAACCACTGCATTTAACTCTA 59.531 40.000 0.00 0.00 0.00 2.43
8354 20270 4.275936 GTCACAACCACTGCATTTAACTCT 59.724 41.667 0.00 0.00 0.00 3.24
8355 20271 4.537015 GTCACAACCACTGCATTTAACTC 58.463 43.478 0.00 0.00 0.00 3.01
8356 20272 3.003275 CGTCACAACCACTGCATTTAACT 59.997 43.478 0.00 0.00 0.00 2.24
8357 20273 3.296628 CGTCACAACCACTGCATTTAAC 58.703 45.455 0.00 0.00 0.00 2.01
8358 20274 2.292016 CCGTCACAACCACTGCATTTAA 59.708 45.455 0.00 0.00 0.00 1.52
8359 20275 1.876799 CCGTCACAACCACTGCATTTA 59.123 47.619 0.00 0.00 0.00 1.40
8360 20276 0.667993 CCGTCACAACCACTGCATTT 59.332 50.000 0.00 0.00 0.00 2.32
8361 20277 0.465460 ACCGTCACAACCACTGCATT 60.465 50.000 0.00 0.00 0.00 3.56
8362 20278 0.465460 AACCGTCACAACCACTGCAT 60.465 50.000 0.00 0.00 0.00 3.96
8363 20279 0.678366 AAACCGTCACAACCACTGCA 60.678 50.000 0.00 0.00 0.00 4.41
8364 20280 0.454196 AAAACCGTCACAACCACTGC 59.546 50.000 0.00 0.00 0.00 4.40
8365 20281 1.267832 CGAAAACCGTCACAACCACTG 60.268 52.381 0.00 0.00 0.00 3.66
8366 20282 1.011333 CGAAAACCGTCACAACCACT 58.989 50.000 0.00 0.00 0.00 4.00
8367 20283 0.590481 GCGAAAACCGTCACAACCAC 60.590 55.000 0.00 0.00 41.15 4.16
8368 20284 1.716826 GGCGAAAACCGTCACAACCA 61.717 55.000 0.00 0.00 43.50 3.67
8369 20285 1.009335 GGCGAAAACCGTCACAACC 60.009 57.895 0.00 0.00 43.50 3.77
8370 20286 4.601315 GGCGAAAACCGTCACAAC 57.399 55.556 0.00 0.00 43.50 3.32
8375 20291 1.991264 GAGAACTAGGCGAAAACCGTC 59.009 52.381 0.00 0.00 44.58 4.79
8376 20292 1.337541 GGAGAACTAGGCGAAAACCGT 60.338 52.381 0.00 0.00 41.15 4.83
8377 20293 1.337447 TGGAGAACTAGGCGAAAACCG 60.337 52.381 0.00 0.00 42.21 4.44
8378 20294 2.074576 GTGGAGAACTAGGCGAAAACC 58.925 52.381 0.00 0.00 0.00 3.27
8379 20295 2.762745 TGTGGAGAACTAGGCGAAAAC 58.237 47.619 0.00 0.00 0.00 2.43
8380 20296 3.135994 GTTGTGGAGAACTAGGCGAAAA 58.864 45.455 0.00 0.00 0.00 2.29
8381 20297 2.549349 GGTTGTGGAGAACTAGGCGAAA 60.549 50.000 0.00 0.00 0.00 3.46
8382 20298 1.001633 GGTTGTGGAGAACTAGGCGAA 59.998 52.381 0.00 0.00 0.00 4.70
8383 20299 0.606604 GGTTGTGGAGAACTAGGCGA 59.393 55.000 0.00 0.00 0.00 5.54
8384 20300 0.320374 TGGTTGTGGAGAACTAGGCG 59.680 55.000 0.00 0.00 0.00 5.52
8385 20301 2.152016 GTTGGTTGTGGAGAACTAGGC 58.848 52.381 0.00 0.00 0.00 3.93
8387 20303 3.318017 CGAGTTGGTTGTGGAGAACTAG 58.682 50.000 0.00 0.00 0.00 2.57
8395 20311 0.240945 GATTGCCGAGTTGGTTGTGG 59.759 55.000 0.00 0.00 41.21 4.17
8397 20313 2.038557 ACTAGATTGCCGAGTTGGTTGT 59.961 45.455 0.00 0.00 41.21 3.32
8398 20314 2.699954 ACTAGATTGCCGAGTTGGTTG 58.300 47.619 0.00 0.00 41.21 3.77
8399 20315 3.418684 AACTAGATTGCCGAGTTGGTT 57.581 42.857 0.00 0.00 38.91 3.67
8401 20317 3.181520 CGAAAACTAGATTGCCGAGTTGG 60.182 47.826 0.00 0.00 39.34 3.77
8402 20318 3.725010 GCGAAAACTAGATTGCCGAGTTG 60.725 47.826 0.00 0.00 39.34 3.16
8407 20323 0.377203 GGGCGAAAACTAGATTGCCG 59.623 55.000 15.34 10.18 43.36 5.69
8409 20325 0.377203 CCGGGCGAAAACTAGATTGC 59.623 55.000 0.00 0.00 0.00 3.56
8414 20330 1.198408 GGAAAACCGGGCGAAAACTAG 59.802 52.381 6.32 0.00 0.00 2.57
8417 20333 1.007038 GGGAAAACCGGGCGAAAAC 60.007 57.895 6.32 0.00 0.00 2.43
8419 20335 0.110104 TTAGGGAAAACCGGGCGAAA 59.890 50.000 6.32 0.00 46.96 3.46
8421 20337 0.328926 AATTAGGGAAAACCGGGCGA 59.671 50.000 6.32 0.00 46.96 5.54
8422 20338 2.041251 TAATTAGGGAAAACCGGGCG 57.959 50.000 6.32 0.00 46.96 6.13
8423 20339 3.359033 AGTTAATTAGGGAAAACCGGGC 58.641 45.455 6.32 0.00 46.96 6.13
8424 20340 5.066893 GCTTAGTTAATTAGGGAAAACCGGG 59.933 44.000 6.32 0.00 46.96 5.73
8425 20341 5.648960 TGCTTAGTTAATTAGGGAAAACCGG 59.351 40.000 0.00 0.00 46.96 5.28
8426 20342 6.746745 TGCTTAGTTAATTAGGGAAAACCG 57.253 37.500 0.00 0.00 46.96 4.44
8427 20343 8.118976 AGTTGCTTAGTTAATTAGGGAAAACC 57.881 34.615 0.00 0.00 40.67 3.27
8429 20345 9.582648 AAGAGTTGCTTAGTTAATTAGGGAAAA 57.417 29.630 0.00 0.00 34.31 2.29
8430 20346 9.582648 AAAGAGTTGCTTAGTTAATTAGGGAAA 57.417 29.630 0.00 0.00 35.24 3.13
8431 20347 9.582648 AAAAGAGTTGCTTAGTTAATTAGGGAA 57.417 29.630 0.00 0.00 35.24 3.97
8433 20349 9.232473 AGAAAAGAGTTGCTTAGTTAATTAGGG 57.768 33.333 0.00 0.00 35.24 3.53
8454 20370 7.768120 TGCTTCCTGCATTCTTTAAAAAGAAAA 59.232 29.630 18.84 8.93 47.00 2.29
8455 20371 7.271511 TGCTTCCTGCATTCTTTAAAAAGAAA 58.728 30.769 18.84 5.28 47.00 2.52
8471 20387 3.242870 CGAAATGTTATCCTGCTTCCTGC 60.243 47.826 0.00 0.00 43.25 4.85
8472 20388 4.191544 TCGAAATGTTATCCTGCTTCCTG 58.808 43.478 0.00 0.00 0.00 3.86
8473 20389 4.487714 TCGAAATGTTATCCTGCTTCCT 57.512 40.909 0.00 0.00 0.00 3.36
8474 20390 5.354234 TCTTTCGAAATGTTATCCTGCTTCC 59.646 40.000 11.70 0.00 0.00 3.46
8475 20391 6.422776 TCTTTCGAAATGTTATCCTGCTTC 57.577 37.500 11.70 0.00 0.00 3.86
8476 20392 6.817765 TTCTTTCGAAATGTTATCCTGCTT 57.182 33.333 11.70 0.00 0.00 3.91
8477 20393 6.817765 TTTCTTTCGAAATGTTATCCTGCT 57.182 33.333 11.70 0.00 34.35 4.24
8478 20394 7.867445 TTTTTCTTTCGAAATGTTATCCTGC 57.133 32.000 11.70 0.00 38.81 4.85
8499 20415 6.073003 CGCTCCTAGTTTCAGATGTTCTTTTT 60.073 38.462 0.00 0.00 0.00 1.94
8500 20416 5.409826 CGCTCCTAGTTTCAGATGTTCTTTT 59.590 40.000 0.00 0.00 0.00 2.27
8501 20417 4.932200 CGCTCCTAGTTTCAGATGTTCTTT 59.068 41.667 0.00 0.00 0.00 2.52
8502 20418 4.021016 ACGCTCCTAGTTTCAGATGTTCTT 60.021 41.667 0.00 0.00 0.00 2.52
8503 20419 3.511934 ACGCTCCTAGTTTCAGATGTTCT 59.488 43.478 0.00 0.00 0.00 3.01
8504 20420 3.851098 ACGCTCCTAGTTTCAGATGTTC 58.149 45.455 0.00 0.00 0.00 3.18
8511 20427 2.626266 TCAGTTGACGCTCCTAGTTTCA 59.374 45.455 0.00 0.00 0.00 2.69
8516 20432 3.510388 TGATTCAGTTGACGCTCCTAG 57.490 47.619 0.00 0.00 0.00 3.02
8544 20460 3.573967 GACTTTCTTCCATTGCTCCCAAA 59.426 43.478 0.00 0.00 34.05 3.28
8579 20495 2.479566 AATCGTGTTGAGGCAGTCAT 57.520 45.000 0.00 0.00 34.17 3.06
8581 20497 2.000447 GGTAATCGTGTTGAGGCAGTC 59.000 52.381 0.00 0.00 0.00 3.51
8582 20498 1.338769 GGGTAATCGTGTTGAGGCAGT 60.339 52.381 0.00 0.00 0.00 4.40
8583 20499 1.369625 GGGTAATCGTGTTGAGGCAG 58.630 55.000 0.00 0.00 0.00 4.85
8584 20500 0.390603 CGGGTAATCGTGTTGAGGCA 60.391 55.000 0.00 0.00 0.00 4.75
8585 20501 0.390735 ACGGGTAATCGTGTTGAGGC 60.391 55.000 0.00 0.00 42.21 4.70
8586 20502 3.826637 ACGGGTAATCGTGTTGAGG 57.173 52.632 0.00 0.00 42.21 3.86
8593 20509 1.000739 TCCTCCCACGGGTAATCGT 59.999 57.895 1.07 0.00 44.91 3.73
8594 20510 1.041447 ACTCCTCCCACGGGTAATCG 61.041 60.000 1.07 0.00 36.47 3.34
8620 20536 1.639298 GAACCAGTGGCTGATGTCGC 61.639 60.000 9.78 0.00 32.44 5.19
8622 20538 2.079925 GAAGAACCAGTGGCTGATGTC 58.920 52.381 9.78 0.00 32.44 3.06
8623 20539 1.271597 GGAAGAACCAGTGGCTGATGT 60.272 52.381 9.78 0.00 38.79 3.06
8625 20541 0.329596 GGGAAGAACCAGTGGCTGAT 59.670 55.000 9.78 0.00 41.20 2.90
8626 20542 1.059584 TGGGAAGAACCAGTGGCTGA 61.060 55.000 9.78 0.00 41.20 4.26
8628 20544 4.002006 TGGGAAGAACCAGTGGCT 57.998 55.556 9.78 0.00 41.20 4.75
8645 20562 1.535444 TCCGTGACCATCACCACCT 60.535 57.895 3.45 0.00 44.20 4.00
8648 20565 1.480212 AAGCTCCGTGACCATCACCA 61.480 55.000 3.45 0.00 44.20 4.17
8653 20570 1.599047 CCAGAAGCTCCGTGACCAT 59.401 57.895 0.00 0.00 0.00 3.55
8658 20575 0.809241 GAGATGCCAGAAGCTCCGTG 60.809 60.000 0.00 0.00 44.23 4.94
8661 20578 0.249405 CTCGAGATGCCAGAAGCTCC 60.249 60.000 6.58 0.00 44.23 4.70
8681 20598 1.412079 TGGCCAAGCATTGTGAAACT 58.588 45.000 0.61 0.00 46.99 2.66
8682 20599 2.137523 CTTGGCCAAGCATTGTGAAAC 58.862 47.619 31.70 0.00 46.99 2.78
8692 20609 1.077429 CTAGGGGTCTTGGCCAAGC 60.077 63.158 36.24 29.26 38.28 4.01
8695 20612 1.987855 CGACTAGGGGTCTTGGCCA 60.988 63.158 0.00 0.00 42.44 5.36
8707 20624 1.550976 AGAACCTTGCTTCCCGACTAG 59.449 52.381 0.00 0.00 0.00 2.57
8714 20631 2.948386 GGTGGAGAACCTTGCTTCC 58.052 57.895 0.00 0.00 46.55 3.46
8768 20690 0.031585 TACACCGCCGACATCATAGC 59.968 55.000 0.00 0.00 0.00 2.97
8772 20694 1.807226 CTCTACACCGCCGACATCA 59.193 57.895 0.00 0.00 0.00 3.07
8773 20695 1.589196 GCTCTACACCGCCGACATC 60.589 63.158 0.00 0.00 0.00 3.06
8774 20696 1.884075 TTGCTCTACACCGCCGACAT 61.884 55.000 0.00 0.00 0.00 3.06
8775 20697 2.486636 CTTGCTCTACACCGCCGACA 62.487 60.000 0.00 0.00 0.00 4.35
8776 20698 1.805945 CTTGCTCTACACCGCCGAC 60.806 63.158 0.00 0.00 0.00 4.79
8777 20699 2.273179 ACTTGCTCTACACCGCCGA 61.273 57.895 0.00 0.00 0.00 5.54
8778 20700 2.094659 CACTTGCTCTACACCGCCG 61.095 63.158 0.00 0.00 0.00 6.46
8779 20701 0.737715 CTCACTTGCTCTACACCGCC 60.738 60.000 0.00 0.00 0.00 6.13
8780 20702 1.355066 GCTCACTTGCTCTACACCGC 61.355 60.000 0.00 0.00 0.00 5.68
8781 20703 0.038251 TGCTCACTTGCTCTACACCG 60.038 55.000 0.00 0.00 0.00 4.94
8782 20704 1.801178 GTTGCTCACTTGCTCTACACC 59.199 52.381 0.00 0.00 0.00 4.16
8783 20705 2.483876 TGTTGCTCACTTGCTCTACAC 58.516 47.619 0.00 0.00 0.00 2.90
8784 20706 2.908688 TGTTGCTCACTTGCTCTACA 57.091 45.000 0.00 0.00 0.00 2.74
8785 20707 3.748048 TGAATGTTGCTCACTTGCTCTAC 59.252 43.478 0.00 0.00 0.00 2.59
8786 20708 4.006780 TGAATGTTGCTCACTTGCTCTA 57.993 40.909 0.00 0.00 0.00 2.43
8787 20709 2.854963 TGAATGTTGCTCACTTGCTCT 58.145 42.857 0.00 0.00 0.00 4.09
8788 20710 3.189910 TGATGAATGTTGCTCACTTGCTC 59.810 43.478 0.00 0.00 0.00 4.26
8789 20711 3.151554 TGATGAATGTTGCTCACTTGCT 58.848 40.909 0.00 0.00 0.00 3.91
8790 20712 3.564235 TGATGAATGTTGCTCACTTGC 57.436 42.857 0.00 0.00 0.00 4.01
8791 20713 6.432607 ACTATGATGAATGTTGCTCACTTG 57.567 37.500 0.00 0.00 0.00 3.16
8792 20714 5.587844 GGACTATGATGAATGTTGCTCACTT 59.412 40.000 0.00 0.00 0.00 3.16
8793 20715 5.121811 GGACTATGATGAATGTTGCTCACT 58.878 41.667 0.00 0.00 0.00 3.41
8794 20716 4.025396 CGGACTATGATGAATGTTGCTCAC 60.025 45.833 0.00 0.00 0.00 3.51
8795 20717 4.122046 CGGACTATGATGAATGTTGCTCA 58.878 43.478 0.00 0.00 0.00 4.26
8796 20718 3.059325 GCGGACTATGATGAATGTTGCTC 60.059 47.826 0.00 0.00 0.00 4.26
8797 20719 2.874701 GCGGACTATGATGAATGTTGCT 59.125 45.455 0.00 0.00 0.00 3.91
8798 20720 2.348872 CGCGGACTATGATGAATGTTGC 60.349 50.000 0.00 0.00 0.00 4.17
8799 20721 2.866156 ACGCGGACTATGATGAATGTTG 59.134 45.455 12.47 0.00 0.00 3.33
8800 20722 3.123804 GACGCGGACTATGATGAATGTT 58.876 45.455 12.47 0.00 0.00 2.71
8801 20723 2.100749 TGACGCGGACTATGATGAATGT 59.899 45.455 12.47 0.00 0.00 2.71
8802 20724 2.742774 TGACGCGGACTATGATGAATG 58.257 47.619 12.47 0.00 0.00 2.67
8803 20725 3.452755 TTGACGCGGACTATGATGAAT 57.547 42.857 12.47 0.00 0.00 2.57
8804 20726 2.951457 TTGACGCGGACTATGATGAA 57.049 45.000 12.47 0.00 0.00 2.57
8805 20727 2.951457 TTTGACGCGGACTATGATGA 57.049 45.000 12.47 0.00 0.00 2.92
8806 20728 3.123050 TCATTTGACGCGGACTATGATG 58.877 45.455 12.47 5.44 0.00 3.07
8807 20729 3.452755 TCATTTGACGCGGACTATGAT 57.547 42.857 12.47 0.00 0.00 2.45
8808 20730 2.951457 TCATTTGACGCGGACTATGA 57.049 45.000 12.47 11.36 0.00 2.15
8809 20731 2.930040 ACTTCATTTGACGCGGACTATG 59.070 45.455 12.47 9.06 0.00 2.23
8810 20732 3.187700 GACTTCATTTGACGCGGACTAT 58.812 45.455 12.47 0.00 0.00 2.12
8811 20733 2.602878 GACTTCATTTGACGCGGACTA 58.397 47.619 12.47 0.00 0.00 2.59
8812 20734 1.429463 GACTTCATTTGACGCGGACT 58.571 50.000 12.47 0.00 0.00 3.85
8813 20735 0.093026 CGACTTCATTTGACGCGGAC 59.907 55.000 12.47 4.63 0.00 4.79
8814 20736 1.623081 GCGACTTCATTTGACGCGGA 61.623 55.000 12.47 0.00 38.51 5.54
8815 20737 1.225745 GCGACTTCATTTGACGCGG 60.226 57.895 12.47 0.00 38.51 6.46
8816 20738 4.326058 GCGACTTCATTTGACGCG 57.674 55.556 3.53 3.53 38.51 6.01
8817 20739 1.595609 CTTGCGACTTCATTTGACGC 58.404 50.000 0.00 0.00 45.42 5.19
8818 20740 1.195448 AGCTTGCGACTTCATTTGACG 59.805 47.619 0.00 0.00 0.00 4.35
8819 20741 2.977405 AGCTTGCGACTTCATTTGAC 57.023 45.000 0.00 0.00 0.00 3.18
8820 20742 3.664107 AGTAGCTTGCGACTTCATTTGA 58.336 40.909 2.62 0.00 0.00 2.69
8821 20743 4.410492 AAGTAGCTTGCGACTTCATTTG 57.590 40.909 13.78 0.00 29.85 2.32
8827 20749 2.289694 ACATGGAAGTAGCTTGCGACTT 60.290 45.455 18.22 18.22 38.60 3.01
8828 20750 1.276421 ACATGGAAGTAGCTTGCGACT 59.724 47.619 2.62 2.62 34.53 4.18
8829 20751 1.726853 ACATGGAAGTAGCTTGCGAC 58.273 50.000 0.00 0.00 34.53 5.19
8830 20752 3.165058 CTACATGGAAGTAGCTTGCGA 57.835 47.619 0.00 0.00 34.53 5.10
8851 20773 2.093306 TGTCCAGGTACATGCGAAAG 57.907 50.000 0.96 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.