Multiple sequence alignment - TraesCS2D01G069300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G069300 chr2D 100.000 6737 0 0 1 6737 29158399 29151663 0.000000e+00 12441
1 TraesCS2D01G069300 chr2D 98.538 1026 15 0 949 1974 2323224 2324249 0.000000e+00 1812
2 TraesCS2D01G069300 chr2D 98.049 1025 19 1 949 1973 467568183 467569206 0.000000e+00 1781
3 TraesCS2D01G069300 chr2D 95.996 1024 20 4 949 1972 91680924 91679922 0.000000e+00 1644
4 TraesCS2D01G069300 chr2D 83.954 698 109 3 6042 6737 115576109 115575413 0.000000e+00 665
5 TraesCS2D01G069300 chr2D 80.918 697 123 5 6042 6737 589907687 589907000 5.940000e-150 542
6 TraesCS2D01G069300 chr2A 90.599 5042 274 86 217 5135 31077798 31072834 0.000000e+00 6501
7 TraesCS2D01G069300 chr2A 82.640 697 118 3 6042 6737 117110528 117109834 1.240000e-171 614
8 TraesCS2D01G069300 chr2A 85.895 553 52 13 5213 5754 31072840 31072303 3.530000e-157 566
9 TraesCS2D01G069300 chr2A 91.160 181 16 0 1 181 31078066 31077886 5.220000e-61 246
10 TraesCS2D01G069300 chrUn 93.962 1772 59 11 3308 5043 17174199 17172440 0.000000e+00 2636
11 TraesCS2D01G069300 chrUn 93.290 462 25 4 5213 5669 17172379 17171919 0.000000e+00 676
12 TraesCS2D01G069300 chrUn 83.307 641 82 17 3545 4176 17074959 17075583 9.810000e-158 568
13 TraesCS2D01G069300 chrUn 83.043 631 84 17 3555 4176 247070817 247070201 9.870000e-153 551
14 TraesCS2D01G069300 chrUn 100.000 66 0 0 5068 5133 17172441 17172376 9.180000e-24 122
15 TraesCS2D01G069300 chr1D 98.733 1026 13 0 949 1974 4059097 4060122 0.000000e+00 1823
16 TraesCS2D01G069300 chr1D 81.178 696 126 5 6044 6737 310236456 310235764 7.630000e-154 555
17 TraesCS2D01G069300 chr7D 98.634 1025 14 0 949 1973 3853132 3852108 0.000000e+00 1816
18 TraesCS2D01G069300 chr7D 98.535 1024 15 0 950 1973 627158183 627159206 0.000000e+00 1808
19 TraesCS2D01G069300 chr7D 98.274 811 14 0 949 1759 31620957 31620147 0.000000e+00 1421
20 TraesCS2D01G069300 chr7D 89.413 699 63 8 6042 6737 610685277 610685967 0.000000e+00 870
21 TraesCS2D01G069300 chr3D 98.535 1024 14 1 949 1972 3485767 3486789 0.000000e+00 1807
22 TraesCS2D01G069300 chr3D 98.649 814 11 0 983 1796 493198401 493199214 0.000000e+00 1443
23 TraesCS2D01G069300 chr2B 86.420 1701 150 30 1744 3380 46881521 46879838 0.000000e+00 1786
24 TraesCS2D01G069300 chr2B 86.235 1373 109 36 319 1646 46883007 46881670 0.000000e+00 1415
25 TraesCS2D01G069300 chr2B 86.403 934 104 18 3461 4380 46879027 46878103 0.000000e+00 1000
26 TraesCS2D01G069300 chr2B 88.750 480 52 2 4213 4692 46804403 46803926 2.710000e-163 586
27 TraesCS2D01G069300 chr2B 85.742 519 59 7 4384 4897 46878038 46877530 9.940000e-148 534
28 TraesCS2D01G069300 chr2B 93.498 323 21 0 1 323 46883420 46883098 1.310000e-131 481
29 TraesCS2D01G069300 chr2B 84.322 472 40 18 5297 5752 46877337 46876884 1.340000e-116 431
30 TraesCS2D01G069300 chr2B 88.782 312 25 5 5771 6078 46876644 46876339 2.290000e-99 374
31 TraesCS2D01G069300 chr2B 83.534 249 24 8 5304 5543 46803681 46803441 4.090000e-52 217
32 TraesCS2D01G069300 chr2B 94.565 92 4 1 6091 6182 46876056 46875966 2.530000e-29 141
33 TraesCS2D01G069300 chr1B 89.711 311 26 2 1 308 184481051 184481358 6.330000e-105 392
34 TraesCS2D01G069300 chr1B 94.175 103 2 4 5118 5216 684089019 684089121 3.250000e-33 154
35 TraesCS2D01G069300 chr1B 93.684 95 4 2 5122 5216 593927069 593927161 2.530000e-29 141
36 TraesCS2D01G069300 chr1B 89.720 107 7 4 5121 5226 149576246 149576143 4.240000e-27 134
37 TraesCS2D01G069300 chr3B 90.411 292 22 2 1 289 71412407 71412119 4.930000e-101 379
38 TraesCS2D01G069300 chr3B 95.506 89 4 0 5130 5218 200860769 200860681 7.040000e-30 143
39 TraesCS2D01G069300 chr6B 97.701 87 2 0 5130 5216 458021251 458021337 4.210000e-32 150
40 TraesCS2D01G069300 chr7B 96.552 87 3 0 5130 5216 428966929 428966843 1.960000e-30 145
41 TraesCS2D01G069300 chr5D 94.565 92 5 0 5132 5223 541992631 541992540 7.040000e-30 143
42 TraesCS2D01G069300 chr5D 92.079 101 7 1 5124 5223 540267644 540267744 2.530000e-29 141
43 TraesCS2D01G069300 chr7A 91.346 104 6 3 5115 5216 77709431 77709533 9.110000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G069300 chr2D 29151663 29158399 6736 True 12441.000000 12441 100.000000 1 6737 1 chr2D.!!$R1 6736
1 TraesCS2D01G069300 chr2D 2323224 2324249 1025 False 1812.000000 1812 98.538000 949 1974 1 chr2D.!!$F1 1025
2 TraesCS2D01G069300 chr2D 467568183 467569206 1023 False 1781.000000 1781 98.049000 949 1973 1 chr2D.!!$F2 1024
3 TraesCS2D01G069300 chr2D 91679922 91680924 1002 True 1644.000000 1644 95.996000 949 1972 1 chr2D.!!$R2 1023
4 TraesCS2D01G069300 chr2D 115575413 115576109 696 True 665.000000 665 83.954000 6042 6737 1 chr2D.!!$R3 695
5 TraesCS2D01G069300 chr2D 589907000 589907687 687 True 542.000000 542 80.918000 6042 6737 1 chr2D.!!$R4 695
6 TraesCS2D01G069300 chr2A 31072303 31078066 5763 True 2437.666667 6501 89.218000 1 5754 3 chr2A.!!$R2 5753
7 TraesCS2D01G069300 chr2A 117109834 117110528 694 True 614.000000 614 82.640000 6042 6737 1 chr2A.!!$R1 695
8 TraesCS2D01G069300 chrUn 17171919 17174199 2280 True 1144.666667 2636 95.750667 3308 5669 3 chrUn.!!$R2 2361
9 TraesCS2D01G069300 chrUn 17074959 17075583 624 False 568.000000 568 83.307000 3545 4176 1 chrUn.!!$F1 631
10 TraesCS2D01G069300 chrUn 247070201 247070817 616 True 551.000000 551 83.043000 3555 4176 1 chrUn.!!$R1 621
11 TraesCS2D01G069300 chr1D 4059097 4060122 1025 False 1823.000000 1823 98.733000 949 1974 1 chr1D.!!$F1 1025
12 TraesCS2D01G069300 chr1D 310235764 310236456 692 True 555.000000 555 81.178000 6044 6737 1 chr1D.!!$R1 693
13 TraesCS2D01G069300 chr7D 3852108 3853132 1024 True 1816.000000 1816 98.634000 949 1973 1 chr7D.!!$R1 1024
14 TraesCS2D01G069300 chr7D 627158183 627159206 1023 False 1808.000000 1808 98.535000 950 1973 1 chr7D.!!$F2 1023
15 TraesCS2D01G069300 chr7D 31620147 31620957 810 True 1421.000000 1421 98.274000 949 1759 1 chr7D.!!$R2 810
16 TraesCS2D01G069300 chr7D 610685277 610685967 690 False 870.000000 870 89.413000 6042 6737 1 chr7D.!!$F1 695
17 TraesCS2D01G069300 chr3D 3485767 3486789 1022 False 1807.000000 1807 98.535000 949 1972 1 chr3D.!!$F1 1023
18 TraesCS2D01G069300 chr3D 493198401 493199214 813 False 1443.000000 1443 98.649000 983 1796 1 chr3D.!!$F2 813
19 TraesCS2D01G069300 chr2B 46875966 46883420 7454 True 770.250000 1786 88.245875 1 6182 8 chr2B.!!$R2 6181
20 TraesCS2D01G069300 chr2B 46803441 46804403 962 True 401.500000 586 86.142000 4213 5543 2 chr2B.!!$R1 1330

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 616 0.246635 GCTGACTCTACAAGCCGGAA 59.753 55.000 5.05 0.00 0.00 4.30 F
771 944 0.248843 GAGACTCAACTGCTGGGAGG 59.751 60.000 15.47 2.74 32.98 4.30 F
795 968 2.041265 GAGCAGGGGAGGAAGGGA 59.959 66.667 0.00 0.00 0.00 4.20 F
796 969 2.041928 AGCAGGGGAGGAAGGGAG 59.958 66.667 0.00 0.00 0.00 4.30 F
1601 1850 4.801147 TGTGATAATTTCGAGCAGCATC 57.199 40.909 0.00 0.00 0.00 3.91 F
2601 2978 1.606606 GTGCGACAATAACTGCTTGC 58.393 50.000 0.00 0.00 0.00 4.01 F
4306 5477 1.033746 GCACAGTGGCCAGCACATAT 61.034 55.000 5.11 0.00 0.00 1.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1978 2333 0.032815 TTCACGCGGAACATCTGTGA 59.967 50.000 12.47 0.00 36.77 3.58 R
1981 2336 0.389817 TCCTTCACGCGGAACATCTG 60.390 55.000 12.47 0.00 0.00 2.90 R
2083 2438 1.671261 GCTCTTCTCACATGCACGACT 60.671 52.381 0.00 0.00 0.00 4.18 R
2102 2457 3.243975 GGAAATCAATGACCCATGGATGC 60.244 47.826 15.22 2.12 35.01 3.91 R
3539 4697 0.176680 CTAAGCGTGTCCTGGATGCT 59.823 55.000 13.26 13.26 37.53 3.79 R
4458 5694 2.048603 CAAAGTAGCAGGCTGGCCC 61.049 63.158 17.64 0.00 36.58 5.80 R
6249 8053 0.030638 GTGACGGTTTGCAAGCACAT 59.969 50.000 15.54 0.00 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.760480 GTCCTCCTCCCTGCTCCTC 60.760 68.421 0.00 0.00 0.00 3.71
124 125 2.203379 TCGACGACTGTCCACCCA 60.203 61.111 1.55 0.00 42.37 4.51
188 189 4.260620 CCCTGAAAACAGAAACACGTACAG 60.261 45.833 0.00 0.00 0.00 2.74
262 311 3.363787 GGGATGCCCACAGAAAACT 57.636 52.632 0.00 0.00 44.65 2.66
284 333 2.166870 GGATCATCCATTTGCACTGCAA 59.833 45.455 12.59 12.59 40.76 4.08
299 349 3.266541 CTGCAAAACAGCAACGATGTA 57.733 42.857 0.00 0.00 45.13 2.29
366 511 1.259609 CTGAGGCCAAATTGGAAGCA 58.740 50.000 17.47 8.42 40.96 3.91
450 595 5.463392 GCTTCTACTATGATCGAATTGTGCA 59.537 40.000 0.00 0.00 0.00 4.57
457 602 2.096335 TGATCGAATTGTGCATGCTGAC 59.904 45.455 20.33 10.35 0.00 3.51
458 603 1.812235 TCGAATTGTGCATGCTGACT 58.188 45.000 20.33 0.00 0.00 3.41
465 610 2.691927 TGTGCATGCTGACTCTACAAG 58.308 47.619 20.33 0.00 0.00 3.16
471 616 0.246635 GCTGACTCTACAAGCCGGAA 59.753 55.000 5.05 0.00 0.00 4.30
501 646 1.062581 CAGAGGGAGAGATGGGGAGAA 60.063 57.143 0.00 0.00 0.00 2.87
513 658 1.227674 GGGAGAAGGCGCATACCTG 60.228 63.158 10.83 0.00 39.93 4.00
552 703 2.740714 GCCGCCGCTTAAGTCAGTG 61.741 63.158 4.02 0.21 0.00 3.66
676 837 4.128388 GCAACCGCCAATTCCCCG 62.128 66.667 0.00 0.00 0.00 5.73
771 944 0.248843 GAGACTCAACTGCTGGGAGG 59.751 60.000 15.47 2.74 32.98 4.30
793 966 3.474570 CGGAGCAGGGGAGGAAGG 61.475 72.222 0.00 0.00 0.00 3.46
794 967 3.093172 GGAGCAGGGGAGGAAGGG 61.093 72.222 0.00 0.00 0.00 3.95
795 968 2.041265 GAGCAGGGGAGGAAGGGA 59.959 66.667 0.00 0.00 0.00 4.20
796 969 2.041928 AGCAGGGGAGGAAGGGAG 59.958 66.667 0.00 0.00 0.00 4.30
1601 1850 4.801147 TGTGATAATTTCGAGCAGCATC 57.199 40.909 0.00 0.00 0.00 3.91
2102 2457 2.360553 AGTCGTGCATGTGAGAAGAG 57.639 50.000 5.68 0.00 0.00 2.85
2224 2591 5.809051 GCTTTGAATTTTCTCCTATGGCAAG 59.191 40.000 0.00 0.00 0.00 4.01
2239 2606 6.488006 CCTATGGCAAGCTAACATGAGTAATT 59.512 38.462 0.00 0.00 0.00 1.40
2240 2607 5.818136 TGGCAAGCTAACATGAGTAATTC 57.182 39.130 0.00 0.00 0.00 2.17
2254 2621 7.557358 ACATGAGTAATTCTGGATGTAATTGCA 59.443 33.333 0.00 0.00 32.22 4.08
2446 2813 9.696917 ATTTTAGAAAAAGGCACTGAAGTTATG 57.303 29.630 0.00 0.00 40.86 1.90
2499 2874 6.377429 ACGATTAGTGACTAAGAGGTTCATGA 59.623 38.462 11.09 0.00 29.02 3.07
2601 2978 1.606606 GTGCGACAATAACTGCTTGC 58.393 50.000 0.00 0.00 0.00 4.01
2914 3321 3.319137 TGATTGTTTCTCAGTAGCGCT 57.681 42.857 17.26 17.26 0.00 5.92
3120 3530 2.141517 GATGCTGCAACGCTCATATCT 58.858 47.619 6.36 0.00 0.00 1.98
3121 3531 2.028420 TGCTGCAACGCTCATATCTT 57.972 45.000 0.00 0.00 0.00 2.40
3122 3532 2.358957 TGCTGCAACGCTCATATCTTT 58.641 42.857 0.00 0.00 0.00 2.52
3276 3691 6.631016 AGATCGTCAATATTATGTGGCGTAT 58.369 36.000 5.02 0.00 43.18 3.06
3410 4536 7.546358 TCATGCCATGTTAAATTCTTGTTAGG 58.454 34.615 4.31 0.00 0.00 2.69
3411 4537 7.395772 TCATGCCATGTTAAATTCTTGTTAGGA 59.604 33.333 4.31 0.00 0.00 2.94
3412 4538 7.156876 TGCCATGTTAAATTCTTGTTAGGAG 57.843 36.000 0.00 0.00 0.00 3.69
3413 4539 6.719370 TGCCATGTTAAATTCTTGTTAGGAGT 59.281 34.615 0.00 0.00 0.00 3.85
3440 4571 7.068470 GGAGTGGAGTAATAGTTGCTACTACTT 59.932 40.741 10.26 8.63 39.59 2.24
3441 4572 7.773149 AGTGGAGTAATAGTTGCTACTACTTG 58.227 38.462 10.26 0.00 39.59 3.16
3829 4989 4.250464 CCTCACTTTACGGCATCTAAACA 58.750 43.478 0.00 0.00 0.00 2.83
3896 5056 5.643421 ATGACCAGCCTATCAAGAGAAAT 57.357 39.130 0.00 0.00 0.00 2.17
4072 5234 9.349713 CTTCTAGGATACCTATTAGAGCCATAG 57.650 40.741 0.00 0.00 35.36 2.23
4192 5360 1.860326 GCACAAGCAAACCACAACATC 59.140 47.619 0.00 0.00 41.58 3.06
4306 5477 1.033746 GCACAGTGGCCAGCACATAT 61.034 55.000 5.11 0.00 0.00 1.78
4524 5762 9.793245 GGTCTATATACGTGATTTCAATTTTCG 57.207 33.333 0.00 0.00 0.00 3.46
4827 6080 1.475280 CCACATCGGGAAGACGACTTA 59.525 52.381 0.00 0.00 46.64 2.24
4838 6091 5.063564 GGGAAGACGACTTATGTGATTTGTC 59.936 44.000 0.00 0.00 36.39 3.18
4898 6151 3.896122 GCTTTAGCACGAAACAATTGGA 58.104 40.909 10.83 0.00 41.59 3.53
4981 6259 5.902681 TGTTAGATCATCGTTAGGAGTTGG 58.097 41.667 0.00 0.00 0.00 3.77
5016 6294 2.034053 GCTAGTCACTAGATGCGCTTCT 59.966 50.000 26.52 26.52 36.26 2.85
5137 6422 6.551385 CTGATGCATAAAATCAGTACTCCC 57.449 41.667 0.00 0.00 43.98 4.30
5138 6423 6.252599 TGATGCATAAAATCAGTACTCCCT 57.747 37.500 0.00 0.00 30.61 4.20
5139 6424 6.291377 TGATGCATAAAATCAGTACTCCCTC 58.709 40.000 0.00 0.00 30.61 4.30
5140 6425 5.036117 TGCATAAAATCAGTACTCCCTCC 57.964 43.478 0.00 0.00 0.00 4.30
5141 6426 4.058817 GCATAAAATCAGTACTCCCTCCG 58.941 47.826 0.00 0.00 0.00 4.63
5142 6427 4.443034 GCATAAAATCAGTACTCCCTCCGT 60.443 45.833 0.00 0.00 0.00 4.69
5143 6428 5.221382 GCATAAAATCAGTACTCCCTCCGTA 60.221 44.000 0.00 0.00 0.00 4.02
5144 6429 6.684613 GCATAAAATCAGTACTCCCTCCGTAA 60.685 42.308 0.00 0.00 0.00 3.18
5145 6430 5.750352 AAAATCAGTACTCCCTCCGTAAA 57.250 39.130 0.00 0.00 0.00 2.01
5146 6431 5.340439 AAATCAGTACTCCCTCCGTAAAG 57.660 43.478 0.00 0.00 0.00 1.85
5147 6432 3.726557 TCAGTACTCCCTCCGTAAAGA 57.273 47.619 0.00 0.00 0.00 2.52
5148 6433 4.038271 TCAGTACTCCCTCCGTAAAGAA 57.962 45.455 0.00 0.00 0.00 2.52
5149 6434 4.410099 TCAGTACTCCCTCCGTAAAGAAA 58.590 43.478 0.00 0.00 0.00 2.52
5150 6435 5.021458 TCAGTACTCCCTCCGTAAAGAAAT 58.979 41.667 0.00 0.00 0.00 2.17
5151 6436 6.189859 TCAGTACTCCCTCCGTAAAGAAATA 58.810 40.000 0.00 0.00 0.00 1.40
5152 6437 6.837568 TCAGTACTCCCTCCGTAAAGAAATAT 59.162 38.462 0.00 0.00 0.00 1.28
5153 6438 8.000709 TCAGTACTCCCTCCGTAAAGAAATATA 58.999 37.037 0.00 0.00 0.00 0.86
5154 6439 8.636213 CAGTACTCCCTCCGTAAAGAAATATAA 58.364 37.037 0.00 0.00 0.00 0.98
5155 6440 9.205513 AGTACTCCCTCCGTAAAGAAATATAAA 57.794 33.333 0.00 0.00 0.00 1.40
5156 6441 9.822185 GTACTCCCTCCGTAAAGAAATATAAAA 57.178 33.333 0.00 0.00 0.00 1.52
5157 6442 8.959705 ACTCCCTCCGTAAAGAAATATAAAAG 57.040 34.615 0.00 0.00 0.00 2.27
5158 6443 8.546322 ACTCCCTCCGTAAAGAAATATAAAAGT 58.454 33.333 0.00 0.00 0.00 2.66
5159 6444 8.726870 TCCCTCCGTAAAGAAATATAAAAGTG 57.273 34.615 0.00 0.00 0.00 3.16
5160 6445 8.323567 TCCCTCCGTAAAGAAATATAAAAGTGT 58.676 33.333 0.00 0.00 0.00 3.55
5161 6446 8.953313 CCCTCCGTAAAGAAATATAAAAGTGTT 58.047 33.333 0.00 0.00 0.00 3.32
5189 6474 9.733219 AGATCACTAAAGTAGTTATCTAAACGC 57.267 33.333 9.38 0.00 43.99 4.84
5190 6475 9.733219 GATCACTAAAGTAGTTATCTAAACGCT 57.267 33.333 3.42 0.00 36.79 5.07
5191 6476 9.733219 ATCACTAAAGTAGTTATCTAAACGCTC 57.267 33.333 0.00 0.00 36.76 5.03
5192 6477 8.954350 TCACTAAAGTAGTTATCTAAACGCTCT 58.046 33.333 0.00 0.00 36.76 4.09
5193 6478 9.570488 CACTAAAGTAGTTATCTAAACGCTCTT 57.430 33.333 0.00 0.00 36.76 2.85
5210 6495 7.772332 ACGCTCTTATATTTGTTTACAGAGG 57.228 36.000 0.00 0.00 0.00 3.69
5211 6496 6.761714 ACGCTCTTATATTTGTTTACAGAGGG 59.238 38.462 8.36 8.36 38.95 4.30
5212 6497 6.984474 CGCTCTTATATTTGTTTACAGAGGGA 59.016 38.462 4.76 0.00 36.40 4.20
5213 6498 7.169982 CGCTCTTATATTTGTTTACAGAGGGAG 59.830 40.741 4.76 0.00 36.40 4.30
5214 6499 7.988028 GCTCTTATATTTGTTTACAGAGGGAGT 59.012 37.037 0.00 0.00 0.00 3.85
5222 6507 7.786046 TTGTTTACAGAGGGAGTAACTGATA 57.214 36.000 0.00 0.00 35.85 2.15
5347 6636 0.104855 CTTAGGGCAGCGCTGTGATA 59.895 55.000 35.80 22.77 0.00 2.15
5403 6693 1.869774 TCGCATTCATCAAGGATCCG 58.130 50.000 5.98 0.00 0.00 4.18
5476 6766 2.876550 GCTACAGCATCATGATGAAGCA 59.123 45.455 34.65 17.36 42.90 3.91
5563 6862 5.815740 ACTTGTGCTTATATTCTTGTACCGG 59.184 40.000 0.00 0.00 0.00 5.28
5565 6864 5.113383 TGTGCTTATATTCTTGTACCGGTG 58.887 41.667 19.93 0.00 0.00 4.94
5571 6870 2.437200 TTCTTGTACCGGTGGTTACG 57.563 50.000 19.93 0.41 37.09 3.18
5597 6897 4.155462 GTCATGAGCAAAGATGTCATGTGT 59.845 41.667 10.48 0.00 41.15 3.72
5600 6900 3.076621 GAGCAAAGATGTCATGTGTCCA 58.923 45.455 0.00 0.00 0.00 4.02
5653 6959 7.165485 TGTAACCATTCAGTAATGTAAGCTGT 58.835 34.615 0.00 0.00 40.84 4.40
5666 6972 7.807977 AATGTAAGCTGTAGGTTGGATATTG 57.192 36.000 6.59 0.00 37.00 1.90
5757 7269 3.528532 CACCCCCGTTTCAGACTATTAC 58.471 50.000 0.00 0.00 0.00 1.89
5767 7279 6.313905 CGTTTCAGACTATTACTTTGCCTGAT 59.686 38.462 0.00 0.00 0.00 2.90
5776 7288 4.695993 TTGCCTGATGTCGCCGCA 62.696 61.111 0.00 0.00 0.00 5.69
5779 7291 2.107750 CCTGATGTCGCCGCATCT 59.892 61.111 17.76 0.00 44.02 2.90
5780 7292 1.953138 CCTGATGTCGCCGCATCTC 60.953 63.158 17.76 0.89 44.02 2.75
5781 7293 1.953138 CTGATGTCGCCGCATCTCC 60.953 63.158 17.76 0.00 44.02 3.71
5819 7348 4.385405 GCTGTCGACTGGCTGCCT 62.385 66.667 21.03 0.00 0.00 4.75
5826 7355 4.341783 ACTGGCTGCCTGGTGCTC 62.342 66.667 26.30 0.00 42.00 4.26
5845 7374 2.567569 GCACATGCATTCCACGCA 59.432 55.556 0.00 0.00 44.94 5.24
5847 7376 0.666880 GCACATGCATTCCACGCAAA 60.667 50.000 0.00 0.00 43.84 3.68
5848 7377 1.780806 CACATGCATTCCACGCAAAA 58.219 45.000 0.00 0.00 43.84 2.44
5856 7385 4.022416 TGCATTCCACGCAAAATTAGACTT 60.022 37.500 0.00 0.00 36.17 3.01
5857 7386 4.324402 GCATTCCACGCAAAATTAGACTTG 59.676 41.667 0.00 0.00 0.00 3.16
5859 7388 4.742438 TCCACGCAAAATTAGACTTGTC 57.258 40.909 0.00 0.00 0.00 3.18
5934 7466 6.421801 ACATCTGTTTTTCTAAAGCATGTTGC 59.578 34.615 0.00 0.00 45.46 4.17
5958 7490 6.555315 CCCAAAGTATTGCACATCTAAGTTC 58.445 40.000 0.00 0.00 35.10 3.01
5969 7501 5.624738 GCACATCTAAGTTCTATATCCGGGG 60.625 48.000 0.00 0.00 0.00 5.73
5970 7502 4.466726 ACATCTAAGTTCTATATCCGGGGC 59.533 45.833 0.00 0.00 0.00 5.80
6026 7558 7.549488 GGGCGTATTTTACAGATTCAGCTATAT 59.451 37.037 0.00 0.00 0.00 0.86
6027 7559 8.596380 GGCGTATTTTACAGATTCAGCTATATC 58.404 37.037 0.00 0.00 0.00 1.63
6028 7560 8.314635 GCGTATTTTACAGATTCAGCTATATCG 58.685 37.037 0.00 0.00 0.00 2.92
6029 7561 9.343103 CGTATTTTACAGATTCAGCTATATCGT 57.657 33.333 0.00 0.00 0.00 3.73
6058 7590 3.750130 ACAGAGCATGACATCTCACAAAC 59.250 43.478 0.00 0.00 0.00 2.93
6123 7925 9.749996 ATGGGAGGATACATACAAGGATAATAT 57.250 33.333 0.00 0.00 41.41 1.28
6241 8045 6.069963 GGGGATGTCTACATAATGCTATTCCT 60.070 42.308 0.00 0.00 36.57 3.36
6274 8078 1.336440 CTTGCAAACCGTCACATTGGA 59.664 47.619 0.00 0.00 0.00 3.53
6281 8086 5.637387 GCAAACCGTCACATTGGAAATATTT 59.363 36.000 0.00 0.00 0.00 1.40
6347 8153 3.375610 TGCTTTGTTTAACTGCACGAGAA 59.624 39.130 0.00 0.00 0.00 2.87
6354 8160 2.325583 AACTGCACGAGAACAAAGGA 57.674 45.000 0.00 0.00 0.00 3.36
6360 8166 3.069016 TGCACGAGAACAAAGGAAGTCTA 59.931 43.478 0.00 0.00 0.00 2.59
6371 8177 0.460311 GGAAGTCTAGGCTGCGCTTA 59.540 55.000 9.73 0.00 0.00 3.09
6420 8226 2.004583 CTTGTTGATCGCTCGGGTTA 57.995 50.000 0.00 0.00 0.00 2.85
6427 8233 1.338973 GATCGCTCGGGTTATGGTGTA 59.661 52.381 0.00 0.00 0.00 2.90
6440 8246 7.114095 GGGTTATGGTGTACTGGAATTTCTTA 58.886 38.462 0.00 0.00 0.00 2.10
6466 8272 1.387084 GACGCTTCTACGAAGCACAAG 59.613 52.381 23.44 12.47 43.15 3.16
6488 8294 5.911752 AGTATCATGACTCGATTGAGCTTT 58.088 37.500 10.09 0.00 46.69 3.51
6508 8315 0.755327 TAGAGCTGATAGCCACGGCA 60.755 55.000 11.35 0.00 43.77 5.69
6518 8325 2.594303 CCACGGCAAGCTGGTTCA 60.594 61.111 5.79 0.00 0.00 3.18
6647 8455 6.473758 GGGAAACAAACTACTGAACCTAGAT 58.526 40.000 0.00 0.00 0.00 1.98
6682 8490 2.512485 TCATTTTGGCAGCACAACAG 57.488 45.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.181021 GTGCGTGGTAGGGTCTCG 59.819 66.667 0.00 0.00 0.00 4.04
124 125 2.687700 AGAAGCACTCGCATCTGATT 57.312 45.000 0.00 0.00 44.25 2.57
245 294 0.890683 CCAGTTTTCTGTGGGCATCC 59.109 55.000 0.00 0.00 45.68 3.51
262 311 2.884720 TGCAGTGCAAATGGATGATCCA 60.885 45.455 17.74 17.74 43.25 3.41
284 333 3.021269 TCTCGTACATCGTTGCTGTTT 57.979 42.857 0.00 0.00 40.80 2.83
295 345 1.674962 GGTAGTCGCCTTCTCGTACAT 59.325 52.381 0.00 0.00 0.00 2.29
299 349 0.957395 TTCGGTAGTCGCCTTCTCGT 60.957 55.000 0.00 0.00 39.05 4.18
366 511 7.173390 GCCAGAGTTGACAAATTAAGAGTTACT 59.827 37.037 0.00 0.00 0.00 2.24
416 561 6.708054 CGATCATAGTAGAAGCCAAAATTCCT 59.292 38.462 0.00 0.00 0.00 3.36
450 595 0.176680 CCGGCTTGTAGAGTCAGCAT 59.823 55.000 0.00 0.00 0.00 3.79
457 602 0.107654 CCCCTTTCCGGCTTGTAGAG 60.108 60.000 0.00 0.00 0.00 2.43
458 603 0.545787 TCCCCTTTCCGGCTTGTAGA 60.546 55.000 0.00 0.00 0.00 2.59
465 610 1.377333 CTGTTCTCCCCTTTCCGGC 60.377 63.158 0.00 0.00 0.00 6.13
471 616 0.793617 TCTCCCTCTGTTCTCCCCTT 59.206 55.000 0.00 0.00 0.00 3.95
501 646 3.164269 CCCTCCAGGTATGCGCCT 61.164 66.667 4.18 0.00 39.99 5.52
533 678 3.554692 CTGACTTAAGCGGCGGCG 61.555 66.667 28.70 28.70 46.35 6.46
535 680 2.100631 CCACTGACTTAAGCGGCGG 61.101 63.158 9.78 0.73 0.00 6.13
538 683 2.100631 CGCCCACTGACTTAAGCGG 61.101 63.158 1.29 3.42 39.89 5.52
542 687 2.427453 GAGAGATCGCCCACTGACTTAA 59.573 50.000 0.00 0.00 0.00 1.85
543 688 2.025155 GAGAGATCGCCCACTGACTTA 58.975 52.381 0.00 0.00 0.00 2.24
544 689 0.820871 GAGAGATCGCCCACTGACTT 59.179 55.000 0.00 0.00 0.00 3.01
545 690 1.380403 CGAGAGATCGCCCACTGACT 61.380 60.000 0.00 0.00 0.00 3.41
552 703 3.967335 CCCGTCGAGAGATCGCCC 61.967 72.222 0.00 0.00 45.19 6.13
622 773 1.772156 CCTGATCCCCTTCTCCCCC 60.772 68.421 0.00 0.00 0.00 5.40
623 774 0.766288 CTCCTGATCCCCTTCTCCCC 60.766 65.000 0.00 0.00 0.00 4.81
624 775 0.766288 CCTCCTGATCCCCTTCTCCC 60.766 65.000 0.00 0.00 0.00 4.30
676 837 0.036671 CGGGGTAAGAATATCCGGCC 60.037 60.000 0.00 0.00 37.35 6.13
679 840 3.305881 GGTTCTCGGGGTAAGAATATCCG 60.306 52.174 0.00 0.00 41.80 4.18
759 927 3.334054 GCTCCCCTCCCAGCAGTT 61.334 66.667 0.00 0.00 35.56 3.16
794 967 4.632458 GATCCGCTCGCCCGTCTC 62.632 72.222 0.00 0.00 0.00 3.36
796 969 4.632458 GAGATCCGCTCGCCCGTC 62.632 72.222 0.00 0.00 33.17 4.79
929 1114 3.715097 GGGCTGGTGAGCTGAGCT 61.715 66.667 6.69 6.69 45.44 4.09
930 1115 3.972971 CTGGGCTGGTGAGCTGAGC 62.973 68.421 0.00 0.00 45.44 4.26
931 1116 2.268280 CTGGGCTGGTGAGCTGAG 59.732 66.667 0.00 0.00 45.44 3.35
932 1117 4.025858 GCTGGGCTGGTGAGCTGA 62.026 66.667 0.00 0.00 45.44 4.26
1601 1850 3.616595 GCAGCTGCAAAACCAACG 58.383 55.556 33.36 0.00 41.59 4.10
1974 2329 1.291184 CGCGGAACATCTGTGAGCAA 61.291 55.000 0.00 0.00 35.34 3.91
1975 2330 1.737735 CGCGGAACATCTGTGAGCA 60.738 57.895 0.00 0.00 35.34 4.26
1976 2331 1.738099 ACGCGGAACATCTGTGAGC 60.738 57.895 12.47 0.00 36.77 4.26
1977 2332 0.388520 TCACGCGGAACATCTGTGAG 60.389 55.000 12.47 0.00 36.77 3.51
1978 2333 0.032815 TTCACGCGGAACATCTGTGA 59.967 50.000 12.47 0.00 36.77 3.58
1980 2335 0.670546 CCTTCACGCGGAACATCTGT 60.671 55.000 12.47 0.00 0.00 3.41
1981 2336 0.389817 TCCTTCACGCGGAACATCTG 60.390 55.000 12.47 0.00 0.00 2.90
2083 2438 1.671261 GCTCTTCTCACATGCACGACT 60.671 52.381 0.00 0.00 0.00 4.18
2102 2457 3.243975 GGAAATCAATGACCCATGGATGC 60.244 47.826 15.22 2.12 35.01 3.91
2224 2591 8.662781 TTACATCCAGAATTACTCATGTTAGC 57.337 34.615 0.00 0.00 33.63 3.09
2239 2606 7.039574 CCATATTTCCATGCAATTACATCCAGA 60.040 37.037 0.00 0.00 0.00 3.86
2240 2607 7.094631 CCATATTTCCATGCAATTACATCCAG 58.905 38.462 0.00 0.00 0.00 3.86
2254 2621 8.802267 CCAATTACGGAATTACCATATTTCCAT 58.198 33.333 5.01 0.00 37.82 3.41
2446 2813 8.171840 GTCTGCTGTTTGTATACTTGAGAATTC 58.828 37.037 4.17 0.00 0.00 2.17
3276 3691 1.549620 CAAGGCCATATGCAACACCAA 59.450 47.619 5.01 0.00 43.89 3.67
3409 4535 4.680975 GCAACTATTACTCCACTCCACTCC 60.681 50.000 0.00 0.00 0.00 3.85
3410 4536 4.160626 AGCAACTATTACTCCACTCCACTC 59.839 45.833 0.00 0.00 0.00 3.51
3411 4537 4.097418 AGCAACTATTACTCCACTCCACT 58.903 43.478 0.00 0.00 0.00 4.00
3412 4538 4.473477 AGCAACTATTACTCCACTCCAC 57.527 45.455 0.00 0.00 0.00 4.02
3413 4539 5.269991 AGTAGCAACTATTACTCCACTCCA 58.730 41.667 0.00 0.00 32.84 3.86
3441 4572 3.461061 TGCTATGTGAAGTGCATCTAGC 58.539 45.455 7.60 7.60 45.96 3.42
3539 4697 0.176680 CTAAGCGTGTCCTGGATGCT 59.823 55.000 13.26 13.26 37.53 3.79
4072 5234 8.380099 TCAACAATAATATGAGTACCCCATACC 58.620 37.037 7.48 0.00 33.85 2.73
4306 5477 7.815549 ACACGTGATTAAGATGTTGTACATACA 59.184 33.333 25.01 11.53 39.27 2.29
4439 5675 9.717942 GCTGGCCCATATAATTATATTAGAGAG 57.282 37.037 14.17 9.54 0.00 3.20
4458 5694 2.048603 CAAAGTAGCAGGCTGGCCC 61.049 63.158 17.64 0.00 36.58 5.80
4586 5824 4.397417 AGATTGAAGCAATGTGTAAGGAGC 59.603 41.667 0.00 0.00 33.90 4.70
4821 6074 3.242091 CGGCAGACAAATCACATAAGTCG 60.242 47.826 0.00 0.00 34.56 4.18
4827 6080 3.002791 CAGTACGGCAGACAAATCACAT 58.997 45.455 0.00 0.00 0.00 3.21
4838 6091 0.723414 CTCAATGTGCAGTACGGCAG 59.277 55.000 21.34 9.61 45.96 4.85
4924 6177 2.632996 AGATGGTTGAAACAGGAGACGA 59.367 45.455 0.00 0.00 0.00 4.20
4981 6259 2.168521 TGACTAGCAGCACCTATTCACC 59.831 50.000 0.00 0.00 0.00 4.02
5016 6294 2.290367 CGGTGCATGTCTTTCAACTTGA 59.710 45.455 0.00 0.00 0.00 3.02
5133 6418 8.827677 CACTTTTATATTTCTTTACGGAGGGAG 58.172 37.037 0.00 0.00 0.00 4.30
5134 6419 8.323567 ACACTTTTATATTTCTTTACGGAGGGA 58.676 33.333 0.00 0.00 0.00 4.20
5135 6420 8.502105 ACACTTTTATATTTCTTTACGGAGGG 57.498 34.615 0.00 0.00 0.00 4.30
5164 6449 9.733219 AGCGTTTAGATAACTACTTTAGTGATC 57.267 33.333 3.29 3.29 44.00 2.92
5165 6450 9.733219 GAGCGTTTAGATAACTACTTTAGTGAT 57.267 33.333 0.00 0.00 39.39 3.06
5166 6451 8.954350 AGAGCGTTTAGATAACTACTTTAGTGA 58.046 33.333 0.00 0.00 39.39 3.41
5167 6452 9.570488 AAGAGCGTTTAGATAACTACTTTAGTG 57.430 33.333 0.00 0.00 39.39 2.74
5184 6469 8.665685 CCTCTGTAAACAAATATAAGAGCGTTT 58.334 33.333 0.00 0.00 0.00 3.60
5185 6470 7.280205 CCCTCTGTAAACAAATATAAGAGCGTT 59.720 37.037 0.00 0.00 0.00 4.84
5186 6471 6.761714 CCCTCTGTAAACAAATATAAGAGCGT 59.238 38.462 0.00 0.00 0.00 5.07
5187 6472 6.984474 TCCCTCTGTAAACAAATATAAGAGCG 59.016 38.462 0.00 0.00 0.00 5.03
5188 6473 7.988028 ACTCCCTCTGTAAACAAATATAAGAGC 59.012 37.037 0.00 0.00 0.00 4.09
5194 6479 8.822805 TCAGTTACTCCCTCTGTAAACAAATAT 58.177 33.333 0.00 0.00 32.58 1.28
5195 6480 8.197592 TCAGTTACTCCCTCTGTAAACAAATA 57.802 34.615 0.00 0.00 32.58 1.40
5196 6481 7.074653 TCAGTTACTCCCTCTGTAAACAAAT 57.925 36.000 0.00 0.00 32.58 2.32
5197 6482 6.488769 TCAGTTACTCCCTCTGTAAACAAA 57.511 37.500 0.00 0.00 32.58 2.83
5198 6483 6.681729 ATCAGTTACTCCCTCTGTAAACAA 57.318 37.500 0.00 0.00 32.58 2.83
5199 6484 7.973048 ATATCAGTTACTCCCTCTGTAAACA 57.027 36.000 0.00 0.00 32.58 2.83
5200 6485 8.475639 TCAATATCAGTTACTCCCTCTGTAAAC 58.524 37.037 0.00 0.00 32.58 2.01
5201 6486 8.603898 TCAATATCAGTTACTCCCTCTGTAAA 57.396 34.615 0.00 0.00 32.58 2.01
5202 6487 8.783660 ATCAATATCAGTTACTCCCTCTGTAA 57.216 34.615 0.00 0.00 0.00 2.41
5203 6488 8.642432 CAATCAATATCAGTTACTCCCTCTGTA 58.358 37.037 0.00 0.00 0.00 2.74
5204 6489 7.504403 CAATCAATATCAGTTACTCCCTCTGT 58.496 38.462 0.00 0.00 0.00 3.41
5205 6490 6.426328 GCAATCAATATCAGTTACTCCCTCTG 59.574 42.308 0.00 0.00 0.00 3.35
5206 6491 6.100279 TGCAATCAATATCAGTTACTCCCTCT 59.900 38.462 0.00 0.00 0.00 3.69
5207 6492 6.291377 TGCAATCAATATCAGTTACTCCCTC 58.709 40.000 0.00 0.00 0.00 4.30
5208 6493 6.252599 TGCAATCAATATCAGTTACTCCCT 57.747 37.500 0.00 0.00 0.00 4.20
5209 6494 7.446625 AGAATGCAATCAATATCAGTTACTCCC 59.553 37.037 4.25 0.00 0.00 4.30
5210 6495 8.388484 AGAATGCAATCAATATCAGTTACTCC 57.612 34.615 4.25 0.00 0.00 3.85
5211 6496 9.661187 CAAGAATGCAATCAATATCAGTTACTC 57.339 33.333 4.25 0.00 0.00 2.59
5212 6497 9.182214 ACAAGAATGCAATCAATATCAGTTACT 57.818 29.630 4.25 0.00 0.00 2.24
5245 6530 3.498397 CCACGACTGTAAGAGCAACAAAT 59.502 43.478 0.00 0.00 37.43 2.32
5347 6636 4.590222 CCCTGCAGCCAAATATCCTTTATT 59.410 41.667 8.66 0.00 0.00 1.40
5403 6693 8.912988 TCAAATATTTCAATCCAGTAACCATCC 58.087 33.333 0.00 0.00 0.00 3.51
5476 6766 4.725737 GCGACGCCGTTATTTGAGTTTTAT 60.726 41.667 9.14 0.00 38.24 1.40
5543 6842 4.510340 CCACCGGTACAAGAATATAAGCAC 59.490 45.833 6.87 0.00 0.00 4.40
5563 6862 0.989890 GCTCATGACGTCGTAACCAC 59.010 55.000 10.54 0.00 0.00 4.16
5565 6864 1.705256 TTGCTCATGACGTCGTAACC 58.295 50.000 10.54 2.08 0.00 2.85
5571 6870 2.995939 TGACATCTTTGCTCATGACGTC 59.004 45.455 9.11 9.11 0.00 4.34
5597 6897 7.876582 CAGATCTATCTATGCTCAAACATTGGA 59.123 37.037 0.00 0.00 34.85 3.53
5600 6900 6.654161 GCCAGATCTATCTATGCTCAAACATT 59.346 38.462 0.00 0.00 34.85 2.71
5666 6972 9.771534 AGTCTGCTCTCCTAATTTATTTATGAC 57.228 33.333 0.00 0.00 0.00 3.06
5683 6991 2.621055 CGCCTGACTAATAGTCTGCTCT 59.379 50.000 22.91 0.00 45.27 4.09
5685 6993 2.359531 GTCGCCTGACTAATAGTCTGCT 59.640 50.000 22.91 0.00 45.27 4.24
5757 7269 2.787249 CGGCGACATCAGGCAAAG 59.213 61.111 0.00 0.00 0.00 2.77
5776 7288 4.208686 GGGACGAAGCGCGGAGAT 62.209 66.667 8.83 0.00 46.49 2.75
5838 7367 4.213270 CAGACAAGTCTAATTTTGCGTGGA 59.787 41.667 1.86 0.00 37.98 4.02
5845 7374 9.066892 TGCTATGTTTCAGACAAGTCTAATTTT 57.933 29.630 1.86 0.00 42.62 1.82
5847 7376 8.621532 TTGCTATGTTTCAGACAAGTCTAATT 57.378 30.769 1.86 0.00 42.62 1.40
5848 7377 8.507249 GTTTGCTATGTTTCAGACAAGTCTAAT 58.493 33.333 1.86 0.00 42.62 1.73
5856 7385 3.536158 GCGTTTGCTATGTTTCAGACA 57.464 42.857 0.00 0.00 39.55 3.41
5914 7446 4.141846 TGGGCAACATGCTTTAGAAAAACA 60.142 37.500 2.00 0.00 44.28 2.83
5920 7452 3.230134 ACTTTGGGCAACATGCTTTAGA 58.770 40.909 2.00 0.00 44.28 2.10
5929 7461 2.034878 TGTGCAATACTTTGGGCAACA 58.965 42.857 0.00 0.00 38.10 3.33
5934 7466 6.375455 AGAACTTAGATGTGCAATACTTTGGG 59.625 38.462 0.00 0.00 33.22 4.12
5958 7490 2.884639 CCAAAAGTTGCCCCGGATATAG 59.115 50.000 0.73 0.00 0.00 1.31
5964 7496 3.230245 TGCCAAAAGTTGCCCCGG 61.230 61.111 0.00 0.00 0.00 5.73
5965 7497 2.028925 GTGCCAAAAGTTGCCCCG 59.971 61.111 0.00 0.00 0.00 5.73
5969 7501 2.129607 CATCAGTGTGCCAAAAGTTGC 58.870 47.619 0.00 0.00 0.00 4.17
5970 7502 2.129607 GCATCAGTGTGCCAAAAGTTG 58.870 47.619 6.46 0.00 39.18 3.16
6011 7543 4.321601 GCCTGACGATATAGCTGAATCTGT 60.322 45.833 0.00 2.31 0.00 3.41
6026 7558 0.671472 CATGCTCTGTTGCCTGACGA 60.671 55.000 0.00 0.00 31.71 4.20
6027 7559 0.671472 TCATGCTCTGTTGCCTGACG 60.671 55.000 0.00 0.00 33.81 4.35
6028 7560 0.801251 GTCATGCTCTGTTGCCTGAC 59.199 55.000 13.62 13.62 45.72 3.51
6029 7561 0.397564 TGTCATGCTCTGTTGCCTGA 59.602 50.000 0.00 0.00 35.75 3.86
6030 7562 1.400846 GATGTCATGCTCTGTTGCCTG 59.599 52.381 0.00 0.00 0.00 4.85
6058 7590 1.439679 GTACCGAGAAAACCCTGCTG 58.560 55.000 0.00 0.00 0.00 4.41
6123 7925 1.078497 CCATGGCCACTCACGCTAA 60.078 57.895 8.16 0.00 0.00 3.09
6214 8018 6.702449 ATAGCATTATGTAGACATCCCCAA 57.298 37.500 0.00 0.00 37.76 4.12
6218 8022 7.880195 ACAAGGAATAGCATTATGTAGACATCC 59.120 37.037 0.00 0.00 37.76 3.51
6241 8045 4.033358 CGGTTTGCAAGCACATAAAAACAA 59.967 37.500 15.54 0.00 30.89 2.83
6249 8053 0.030638 GTGACGGTTTGCAAGCACAT 59.969 50.000 15.54 0.00 0.00 3.21
6274 8078 6.885376 TGCAAAATGGGCATTGAGAAATATTT 59.115 30.769 0.00 0.00 36.11 1.40
6281 8086 3.666274 CTTTGCAAAATGGGCATTGAGA 58.334 40.909 13.84 0.00 41.58 3.27
6347 8153 1.338200 CGCAGCCTAGACTTCCTTTGT 60.338 52.381 0.00 0.00 0.00 2.83
6371 8177 6.040166 GCATCATGTATGATTTTCTCAACCCT 59.960 38.462 4.66 0.00 44.70 4.34
6420 8226 7.121168 CACACATAAGAAATTCCAGTACACCAT 59.879 37.037 0.00 0.00 0.00 3.55
6427 8233 4.154195 GCGTCACACATAAGAAATTCCAGT 59.846 41.667 0.00 0.00 0.00 4.00
6440 8246 2.596452 CTTCGTAGAAGCGTCACACAT 58.404 47.619 1.61 0.00 45.90 3.21
6466 8272 6.595772 AAAAGCTCAATCGAGTCATGATAC 57.404 37.500 0.00 0.00 41.71 2.24
6488 8294 0.389391 GCCGTGGCTATCAGCTCTAA 59.611 55.000 2.98 0.00 41.99 2.10
6502 8308 0.314935 AAATGAACCAGCTTGCCGTG 59.685 50.000 0.00 0.00 0.00 4.94
6505 8311 0.681175 ACCAAATGAACCAGCTTGCC 59.319 50.000 0.00 0.00 0.00 4.52
6508 8315 0.681175 GCCACCAAATGAACCAGCTT 59.319 50.000 0.00 0.00 0.00 3.74
6518 8325 0.036164 TGTCTACGCTGCCACCAAAT 59.964 50.000 0.00 0.00 0.00 2.32
6647 8455 0.335705 ATGATGGGCCATGTGTTCCA 59.664 50.000 26.77 14.93 0.00 3.53
6692 8500 5.954296 TCCTCAAAGAAAGAAGCATCAAG 57.046 39.130 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.