Multiple sequence alignment - TraesCS2D01G068500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G068500 chr2D 100.000 3139 0 0 1 3139 28761917 28765055 0.000000e+00 5797.0
1 TraesCS2D01G068500 chr2D 83.933 1139 137 29 1070 2186 533029822 533028708 0.000000e+00 1048.0
2 TraesCS2D01G068500 chr2D 82.723 1146 132 37 1070 2190 532499745 532498641 0.000000e+00 959.0
3 TraesCS2D01G068500 chr2A 92.069 1803 81 16 373 2145 30567000 30568770 0.000000e+00 2481.0
4 TraesCS2D01G068500 chr2A 85.036 1096 129 16 1055 2144 677368472 677367406 0.000000e+00 1083.0
5 TraesCS2D01G068500 chr2A 83.563 1162 142 30 1051 2189 677039343 677038208 0.000000e+00 1042.0
6 TraesCS2D01G068500 chr2A 87.606 823 101 1 2318 3139 322542324 322541502 0.000000e+00 953.0
7 TraesCS2D01G068500 chr2A 84.751 623 83 7 1524 2146 677068925 677068315 5.750000e-172 614.0
8 TraesCS2D01G068500 chr2A 84.751 623 83 7 1524 2146 677100866 677100256 5.750000e-172 614.0
9 TraesCS2D01G068500 chr2A 87.654 162 18 2 372 533 678606858 678606699 1.490000e-43 187.0
10 TraesCS2D01G068500 chr2A 84.884 172 9 5 2155 2320 30569014 30569174 1.170000e-34 158.0
11 TraesCS2D01G068500 chr5A 95.255 822 28 4 2318 3139 67913668 67912858 0.000000e+00 1291.0
12 TraesCS2D01G068500 chr5A 87.956 822 99 0 2318 3139 458974765 458973944 0.000000e+00 970.0
13 TraesCS2D01G068500 chr5A 83.822 1057 124 27 1094 2134 356594458 356593433 0.000000e+00 961.0
14 TraesCS2D01G068500 chr5A 87.120 823 104 2 2318 3139 620177586 620176765 0.000000e+00 931.0
15 TraesCS2D01G068500 chr5A 86.861 822 108 0 2318 3139 521758762 521759583 0.000000e+00 920.0
16 TraesCS2D01G068500 chr1A 96.452 761 27 0 2318 3078 369702832 369703592 0.000000e+00 1256.0
17 TraesCS2D01G068500 chr1A 87.985 824 97 2 2318 3139 304994469 304995292 0.000000e+00 972.0
18 TraesCS2D01G068500 chr1A 87.835 822 100 0 2318 3139 253725847 253726668 0.000000e+00 965.0
19 TraesCS2D01G068500 chr1A 94.633 354 17 2 13 364 353920750 353921103 5.920000e-152 547.0
20 TraesCS2D01G068500 chr1A 93.962 265 15 1 101 364 582568307 582568043 1.750000e-107 399.0
21 TraesCS2D01G068500 chr1A 97.778 90 1 1 16 104 582573220 582573131 1.510000e-33 154.0
22 TraesCS2D01G068500 chr1A 100.000 31 0 0 3109 3139 369703598 369703628 1.220000e-04 58.4
23 TraesCS2D01G068500 chr5B 87.835 822 100 0 2318 3139 631809934 631810755 0.000000e+00 965.0
24 TraesCS2D01G068500 chr5B 82.706 1116 140 32 1063 2134 304655404 304654298 0.000000e+00 942.0
25 TraesCS2D01G068500 chr2B 82.860 1126 137 31 1055 2145 632513367 632512263 0.000000e+00 959.0
26 TraesCS2D01G068500 chr5D 82.958 1109 138 33 1063 2134 268934397 268933303 0.000000e+00 953.0
27 TraesCS2D01G068500 chr5D 85.158 822 106 2 2318 3139 491876486 491875681 0.000000e+00 828.0
28 TraesCS2D01G068500 chr5D 88.797 241 26 1 2873 3113 491821401 491821162 8.510000e-76 294.0
29 TraesCS2D01G068500 chr5D 90.196 153 15 0 381 533 340397706 340397554 1.910000e-47 200.0
30 TraesCS2D01G068500 chrUn 82.715 1105 158 23 1051 2146 183931609 183932689 0.000000e+00 952.0
31 TraesCS2D01G068500 chrUn 82.534 1105 160 23 1051 2146 25995316 25994236 0.000000e+00 941.0
32 TraesCS2D01G068500 chrUn 82.369 1106 160 25 1051 2146 226925563 226926643 0.000000e+00 929.0
33 TraesCS2D01G068500 chrUn 81.609 696 101 21 1051 1737 26107264 26106587 4.580000e-153 551.0
34 TraesCS2D01G068500 chrUn 96.190 210 8 0 146 355 13986033 13986242 8.340000e-91 344.0
35 TraesCS2D01G068500 chr7A 87.105 822 106 0 2318 3139 20073661 20074482 0.000000e+00 931.0
36 TraesCS2D01G068500 chr7A 87.105 822 105 1 2318 3139 53960569 53961389 0.000000e+00 929.0
37 TraesCS2D01G068500 chr3D 86.707 820 108 1 2318 3137 577397440 577398258 0.000000e+00 909.0
38 TraesCS2D01G068500 chr4A 96.741 491 16 0 2318 2808 583397391 583397881 0.000000e+00 819.0
39 TraesCS2D01G068500 chr4A 95.640 344 15 0 2796 3139 583404954 583405297 1.270000e-153 553.0
40 TraesCS2D01G068500 chr3B 93.646 362 20 3 5 364 805609112 805608752 3.560000e-149 538.0
41 TraesCS2D01G068500 chr4B 94.034 352 20 1 14 364 449128662 449128311 1.660000e-147 532.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G068500 chr2D 28761917 28765055 3138 False 5797.0 5797 100.0000 1 3139 1 chr2D.!!$F1 3138
1 TraesCS2D01G068500 chr2D 533028708 533029822 1114 True 1048.0 1048 83.9330 1070 2186 1 chr2D.!!$R2 1116
2 TraesCS2D01G068500 chr2D 532498641 532499745 1104 True 959.0 959 82.7230 1070 2190 1 chr2D.!!$R1 1120
3 TraesCS2D01G068500 chr2A 30567000 30569174 2174 False 1319.5 2481 88.4765 373 2320 2 chr2A.!!$F1 1947
4 TraesCS2D01G068500 chr2A 677367406 677368472 1066 True 1083.0 1083 85.0360 1055 2144 1 chr2A.!!$R5 1089
5 TraesCS2D01G068500 chr2A 677038208 677039343 1135 True 1042.0 1042 83.5630 1051 2189 1 chr2A.!!$R2 1138
6 TraesCS2D01G068500 chr2A 322541502 322542324 822 True 953.0 953 87.6060 2318 3139 1 chr2A.!!$R1 821
7 TraesCS2D01G068500 chr2A 677068315 677068925 610 True 614.0 614 84.7510 1524 2146 1 chr2A.!!$R3 622
8 TraesCS2D01G068500 chr2A 677100256 677100866 610 True 614.0 614 84.7510 1524 2146 1 chr2A.!!$R4 622
9 TraesCS2D01G068500 chr5A 67912858 67913668 810 True 1291.0 1291 95.2550 2318 3139 1 chr5A.!!$R1 821
10 TraesCS2D01G068500 chr5A 458973944 458974765 821 True 970.0 970 87.9560 2318 3139 1 chr5A.!!$R3 821
11 TraesCS2D01G068500 chr5A 356593433 356594458 1025 True 961.0 961 83.8220 1094 2134 1 chr5A.!!$R2 1040
12 TraesCS2D01G068500 chr5A 620176765 620177586 821 True 931.0 931 87.1200 2318 3139 1 chr5A.!!$R4 821
13 TraesCS2D01G068500 chr5A 521758762 521759583 821 False 920.0 920 86.8610 2318 3139 1 chr5A.!!$F1 821
14 TraesCS2D01G068500 chr1A 304994469 304995292 823 False 972.0 972 87.9850 2318 3139 1 chr1A.!!$F2 821
15 TraesCS2D01G068500 chr1A 253725847 253726668 821 False 965.0 965 87.8350 2318 3139 1 chr1A.!!$F1 821
16 TraesCS2D01G068500 chr1A 369702832 369703628 796 False 657.2 1256 98.2260 2318 3139 2 chr1A.!!$F4 821
17 TraesCS2D01G068500 chr5B 631809934 631810755 821 False 965.0 965 87.8350 2318 3139 1 chr5B.!!$F1 821
18 TraesCS2D01G068500 chr5B 304654298 304655404 1106 True 942.0 942 82.7060 1063 2134 1 chr5B.!!$R1 1071
19 TraesCS2D01G068500 chr2B 632512263 632513367 1104 True 959.0 959 82.8600 1055 2145 1 chr2B.!!$R1 1090
20 TraesCS2D01G068500 chr5D 268933303 268934397 1094 True 953.0 953 82.9580 1063 2134 1 chr5D.!!$R1 1071
21 TraesCS2D01G068500 chr5D 491875681 491876486 805 True 828.0 828 85.1580 2318 3139 1 chr5D.!!$R4 821
22 TraesCS2D01G068500 chrUn 183931609 183932689 1080 False 952.0 952 82.7150 1051 2146 1 chrUn.!!$F2 1095
23 TraesCS2D01G068500 chrUn 25994236 25995316 1080 True 941.0 941 82.5340 1051 2146 1 chrUn.!!$R1 1095
24 TraesCS2D01G068500 chrUn 226925563 226926643 1080 False 929.0 929 82.3690 1051 2146 1 chrUn.!!$F3 1095
25 TraesCS2D01G068500 chrUn 26106587 26107264 677 True 551.0 551 81.6090 1051 1737 1 chrUn.!!$R2 686
26 TraesCS2D01G068500 chr7A 20073661 20074482 821 False 931.0 931 87.1050 2318 3139 1 chr7A.!!$F1 821
27 TraesCS2D01G068500 chr7A 53960569 53961389 820 False 929.0 929 87.1050 2318 3139 1 chr7A.!!$F2 821
28 TraesCS2D01G068500 chr3D 577397440 577398258 818 False 909.0 909 86.7070 2318 3137 1 chr3D.!!$F1 819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
133 134 0.032912 TGCGAGGGGTACTATGACCA 60.033 55.0 0.00 0.0 41.73 4.02 F
327 328 0.033504 ACGACAATCGGCAACTCAGT 59.966 50.0 2.97 0.0 45.59 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1608 1721 0.254178 ACCTGCTGCTCTAACATGGG 59.746 55.000 0.00 0.0 0.00 4.00 R
2260 2614 1.064505 ACGCATCATTCCATGCTTTCG 59.935 47.619 4.06 0.0 46.09 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.944234 TTTTTGCGGGGTAAAAATGAATTT 57.056 29.167 1.14 0.00 33.61 1.82
40 41 6.546972 TTTTGCGGGGTAAAAATGAATTTC 57.453 33.333 0.00 0.00 0.00 2.17
41 42 4.873746 TGCGGGGTAAAAATGAATTTCA 57.126 36.364 0.75 0.75 0.00 2.69
42 43 5.413309 TGCGGGGTAAAAATGAATTTCAT 57.587 34.783 6.06 6.06 39.09 2.57
44 45 6.936279 TGCGGGGTAAAAATGAATTTCATTA 58.064 32.000 21.68 6.95 45.57 1.90
45 46 6.814146 TGCGGGGTAAAAATGAATTTCATTAC 59.186 34.615 21.68 16.48 45.57 1.89
46 47 7.039270 GCGGGGTAAAAATGAATTTCATTACT 58.961 34.615 21.68 14.94 45.57 2.24
47 48 7.222031 GCGGGGTAAAAATGAATTTCATTACTC 59.778 37.037 21.68 16.49 45.57 2.59
48 49 8.247562 CGGGGTAAAAATGAATTTCATTACTCA 58.752 33.333 21.68 7.89 45.57 3.41
49 50 9.936759 GGGGTAAAAATGAATTTCATTACTCAA 57.063 29.630 21.68 6.72 45.57 3.02
54 55 9.933723 AAAAATGAATTTCATTACTCAAGGAGG 57.066 29.630 21.68 0.00 45.57 4.30
55 56 6.705863 ATGAATTTCATTACTCAAGGAGGC 57.294 37.500 6.06 0.00 32.13 4.70
56 57 4.949856 TGAATTTCATTACTCAAGGAGGCC 59.050 41.667 0.00 0.00 33.35 5.19
57 58 2.691409 TTCATTACTCAAGGAGGCCG 57.309 50.000 0.00 0.00 33.35 6.13
58 59 1.568504 TCATTACTCAAGGAGGCCGT 58.431 50.000 0.00 0.00 33.35 5.68
59 60 1.906574 TCATTACTCAAGGAGGCCGTT 59.093 47.619 0.00 0.00 33.35 4.44
60 61 2.093658 TCATTACTCAAGGAGGCCGTTC 60.094 50.000 0.00 0.00 33.35 3.95
61 62 1.344065 TTACTCAAGGAGGCCGTTCA 58.656 50.000 0.00 0.00 33.35 3.18
62 63 0.895530 TACTCAAGGAGGCCGTTCAG 59.104 55.000 0.00 0.00 33.35 3.02
63 64 1.743252 CTCAAGGAGGCCGTTCAGC 60.743 63.158 0.00 0.00 0.00 4.26
72 73 3.996825 GCCGTTCAGCCATACAAAG 57.003 52.632 0.00 0.00 0.00 2.77
73 74 1.448985 GCCGTTCAGCCATACAAAGA 58.551 50.000 0.00 0.00 0.00 2.52
74 75 2.017049 GCCGTTCAGCCATACAAAGAT 58.983 47.619 0.00 0.00 0.00 2.40
75 76 2.423538 GCCGTTCAGCCATACAAAGATT 59.576 45.455 0.00 0.00 0.00 2.40
76 77 3.119495 GCCGTTCAGCCATACAAAGATTT 60.119 43.478 0.00 0.00 0.00 2.17
77 78 4.095782 GCCGTTCAGCCATACAAAGATTTA 59.904 41.667 0.00 0.00 0.00 1.40
78 79 5.569413 CCGTTCAGCCATACAAAGATTTAC 58.431 41.667 0.00 0.00 0.00 2.01
79 80 5.123186 CCGTTCAGCCATACAAAGATTTACA 59.877 40.000 0.00 0.00 0.00 2.41
80 81 6.348950 CCGTTCAGCCATACAAAGATTTACAA 60.349 38.462 0.00 0.00 0.00 2.41
81 82 7.250569 CGTTCAGCCATACAAAGATTTACAAT 58.749 34.615 0.00 0.00 0.00 2.71
82 83 7.218773 CGTTCAGCCATACAAAGATTTACAATG 59.781 37.037 0.00 0.00 0.00 2.82
83 84 7.701539 TCAGCCATACAAAGATTTACAATGT 57.298 32.000 0.00 0.00 0.00 2.71
84 85 7.761409 TCAGCCATACAAAGATTTACAATGTC 58.239 34.615 0.00 0.00 0.00 3.06
85 86 6.688385 CAGCCATACAAAGATTTACAATGTCG 59.312 38.462 0.00 0.00 0.00 4.35
86 87 6.374333 AGCCATACAAAGATTTACAATGTCGT 59.626 34.615 0.00 0.00 0.00 4.34
87 88 6.468956 GCCATACAAAGATTTACAATGTCGTG 59.531 38.462 0.00 0.00 0.00 4.35
88 89 6.468956 CCATACAAAGATTTACAATGTCGTGC 59.531 38.462 0.00 0.00 0.00 5.34
89 90 5.431420 ACAAAGATTTACAATGTCGTGCA 57.569 34.783 0.00 0.00 0.00 4.57
90 91 5.826586 ACAAAGATTTACAATGTCGTGCAA 58.173 33.333 0.00 0.00 0.00 4.08
91 92 5.914635 ACAAAGATTTACAATGTCGTGCAAG 59.085 36.000 0.00 0.00 0.00 4.01
92 93 4.083581 AGATTTACAATGTCGTGCAAGC 57.916 40.909 0.00 0.00 0.00 4.01
93 94 2.697431 TTTACAATGTCGTGCAAGCC 57.303 45.000 0.00 0.00 0.00 4.35
94 95 1.598882 TTACAATGTCGTGCAAGCCA 58.401 45.000 0.00 0.00 0.00 4.75
95 96 1.155889 TACAATGTCGTGCAAGCCAG 58.844 50.000 0.00 0.00 0.00 4.85
96 97 0.534877 ACAATGTCGTGCAAGCCAGA 60.535 50.000 0.00 0.00 0.00 3.86
97 98 0.806868 CAATGTCGTGCAAGCCAGAT 59.193 50.000 0.00 0.00 0.00 2.90
98 99 1.089920 AATGTCGTGCAAGCCAGATC 58.910 50.000 0.00 0.00 0.00 2.75
99 100 0.745845 ATGTCGTGCAAGCCAGATCC 60.746 55.000 0.00 0.00 0.00 3.36
100 101 2.109126 GTCGTGCAAGCCAGATCCC 61.109 63.158 0.00 0.00 0.00 3.85
101 102 2.046023 CGTGCAAGCCAGATCCCA 60.046 61.111 0.00 0.00 0.00 4.37
102 103 1.675310 CGTGCAAGCCAGATCCCAA 60.675 57.895 0.00 0.00 0.00 4.12
103 104 1.885871 GTGCAAGCCAGATCCCAAC 59.114 57.895 0.00 0.00 0.00 3.77
104 105 1.304381 TGCAAGCCAGATCCCAACC 60.304 57.895 0.00 0.00 0.00 3.77
105 106 1.304381 GCAAGCCAGATCCCAACCA 60.304 57.895 0.00 0.00 0.00 3.67
106 107 1.598701 GCAAGCCAGATCCCAACCAC 61.599 60.000 0.00 0.00 0.00 4.16
107 108 0.251297 CAAGCCAGATCCCAACCACA 60.251 55.000 0.00 0.00 0.00 4.17
108 109 0.251341 AAGCCAGATCCCAACCACAC 60.251 55.000 0.00 0.00 0.00 3.82
109 110 2.040544 GCCAGATCCCAACCACACG 61.041 63.158 0.00 0.00 0.00 4.49
110 111 1.377202 CCAGATCCCAACCACACGG 60.377 63.158 0.00 0.00 38.77 4.94
111 112 2.040544 CAGATCCCAACCACACGGC 61.041 63.158 0.00 0.00 34.57 5.68
112 113 3.124921 GATCCCAACCACACGGCG 61.125 66.667 4.80 4.80 34.57 6.46
113 114 4.715523 ATCCCAACCACACGGCGG 62.716 66.667 13.24 2.35 34.57 6.13
127 128 3.142838 GCGGTGCGAGGGGTACTA 61.143 66.667 0.00 0.00 0.00 1.82
128 129 2.496291 GCGGTGCGAGGGGTACTAT 61.496 63.158 0.00 0.00 0.00 2.12
129 130 1.362717 CGGTGCGAGGGGTACTATG 59.637 63.158 0.00 0.00 0.00 2.23
130 131 1.105167 CGGTGCGAGGGGTACTATGA 61.105 60.000 0.00 0.00 0.00 2.15
131 132 0.388294 GGTGCGAGGGGTACTATGAC 59.612 60.000 0.00 0.00 0.00 3.06
132 133 0.388294 GTGCGAGGGGTACTATGACC 59.612 60.000 0.00 0.00 38.93 4.02
133 134 0.032912 TGCGAGGGGTACTATGACCA 60.033 55.000 0.00 0.00 41.73 4.02
134 135 1.339097 GCGAGGGGTACTATGACCAT 58.661 55.000 0.00 0.00 41.73 3.55
135 136 2.158430 TGCGAGGGGTACTATGACCATA 60.158 50.000 0.00 0.00 41.73 2.74
136 137 2.895404 GCGAGGGGTACTATGACCATAA 59.105 50.000 0.00 0.00 41.73 1.90
137 138 3.056749 GCGAGGGGTACTATGACCATAAG 60.057 52.174 0.00 0.00 41.73 1.73
138 139 3.056749 CGAGGGGTACTATGACCATAAGC 60.057 52.174 0.00 0.00 41.73 3.09
139 140 2.897969 AGGGGTACTATGACCATAAGCG 59.102 50.000 0.00 0.00 41.73 4.68
140 141 2.028385 GGGGTACTATGACCATAAGCGG 60.028 54.545 0.00 0.00 41.73 5.52
141 142 2.612221 GGGTACTATGACCATAAGCGGC 60.612 54.545 0.00 0.00 41.73 6.53
142 143 2.036733 GGTACTATGACCATAAGCGGCA 59.963 50.000 1.45 0.00 39.51 5.69
143 144 3.493699 GGTACTATGACCATAAGCGGCAA 60.494 47.826 1.45 0.00 39.51 4.52
144 145 2.838736 ACTATGACCATAAGCGGCAAG 58.161 47.619 1.45 0.00 0.00 4.01
145 146 2.434336 ACTATGACCATAAGCGGCAAGA 59.566 45.455 1.45 0.00 0.00 3.02
146 147 1.959042 ATGACCATAAGCGGCAAGAG 58.041 50.000 1.45 0.00 0.00 2.85
147 148 0.744414 TGACCATAAGCGGCAAGAGC 60.744 55.000 1.45 0.00 41.10 4.09
148 149 0.744414 GACCATAAGCGGCAAGAGCA 60.744 55.000 1.45 0.00 44.61 4.26
149 150 0.107017 ACCATAAGCGGCAAGAGCAT 60.107 50.000 1.45 0.00 44.61 3.79
150 151 0.309922 CCATAAGCGGCAAGAGCATG 59.690 55.000 1.45 0.00 44.61 4.06
151 152 1.302366 CATAAGCGGCAAGAGCATGA 58.698 50.000 1.45 0.00 44.61 3.07
152 153 1.003116 CATAAGCGGCAAGAGCATGAC 60.003 52.381 1.45 0.00 44.61 3.06
153 154 0.250234 TAAGCGGCAAGAGCATGACT 59.750 50.000 1.45 0.00 44.61 3.41
154 155 0.250234 AAGCGGCAAGAGCATGACTA 59.750 50.000 1.45 0.00 44.61 2.59
155 156 0.250234 AGCGGCAAGAGCATGACTAA 59.750 50.000 1.45 0.00 44.61 2.24
156 157 0.375106 GCGGCAAGAGCATGACTAAC 59.625 55.000 0.00 0.00 44.61 2.34
157 158 1.725641 CGGCAAGAGCATGACTAACA 58.274 50.000 0.00 0.00 44.61 2.41
158 159 1.662629 CGGCAAGAGCATGACTAACAG 59.337 52.381 0.00 0.00 44.61 3.16
159 160 2.704572 GGCAAGAGCATGACTAACAGT 58.295 47.619 0.00 0.00 44.61 3.55
160 161 2.417933 GGCAAGAGCATGACTAACAGTG 59.582 50.000 0.00 0.00 44.61 3.66
161 162 3.070018 GCAAGAGCATGACTAACAGTGT 58.930 45.455 0.00 0.00 41.58 3.55
162 163 3.499918 GCAAGAGCATGACTAACAGTGTT 59.500 43.478 14.05 14.05 41.58 3.32
163 164 4.023707 GCAAGAGCATGACTAACAGTGTTT 60.024 41.667 14.90 0.00 41.58 2.83
164 165 5.506317 GCAAGAGCATGACTAACAGTGTTTT 60.506 40.000 14.90 1.31 41.58 2.43
165 166 5.679734 AGAGCATGACTAACAGTGTTTTG 57.320 39.130 14.90 10.16 0.00 2.44
166 167 5.368145 AGAGCATGACTAACAGTGTTTTGA 58.632 37.500 14.90 0.00 0.00 2.69
167 168 5.468072 AGAGCATGACTAACAGTGTTTTGAG 59.532 40.000 14.90 8.26 0.00 3.02
168 169 5.368145 AGCATGACTAACAGTGTTTTGAGA 58.632 37.500 14.90 0.00 0.00 3.27
169 170 5.468072 AGCATGACTAACAGTGTTTTGAGAG 59.532 40.000 14.90 7.49 0.00 3.20
170 171 5.683859 CATGACTAACAGTGTTTTGAGAGC 58.316 41.667 14.90 4.74 0.00 4.09
171 172 3.802139 TGACTAACAGTGTTTTGAGAGCG 59.198 43.478 14.90 0.00 0.00 5.03
172 173 4.049186 GACTAACAGTGTTTTGAGAGCGA 58.951 43.478 14.90 0.00 0.00 4.93
173 174 3.802685 ACTAACAGTGTTTTGAGAGCGAC 59.197 43.478 14.90 0.00 0.00 5.19
174 175 2.604046 ACAGTGTTTTGAGAGCGACT 57.396 45.000 0.00 0.00 0.00 4.18
175 176 3.728076 ACAGTGTTTTGAGAGCGACTA 57.272 42.857 0.00 0.00 0.00 2.59
176 177 4.054780 ACAGTGTTTTGAGAGCGACTAA 57.945 40.909 0.00 0.00 0.00 2.24
177 178 4.632153 ACAGTGTTTTGAGAGCGACTAAT 58.368 39.130 0.00 0.00 0.00 1.73
178 179 5.779922 ACAGTGTTTTGAGAGCGACTAATA 58.220 37.500 0.00 0.00 0.00 0.98
179 180 6.398918 ACAGTGTTTTGAGAGCGACTAATAT 58.601 36.000 0.00 0.00 0.00 1.28
180 181 6.311445 ACAGTGTTTTGAGAGCGACTAATATG 59.689 38.462 0.00 0.00 0.00 1.78
181 182 5.812642 AGTGTTTTGAGAGCGACTAATATGG 59.187 40.000 0.00 0.00 0.00 2.74
182 183 4.570772 TGTTTTGAGAGCGACTAATATGGC 59.429 41.667 0.00 0.00 0.00 4.40
183 184 4.672587 TTTGAGAGCGACTAATATGGCT 57.327 40.909 0.00 0.00 36.21 4.75
184 185 5.784578 TTTGAGAGCGACTAATATGGCTA 57.215 39.130 0.00 0.00 33.29 3.93
185 186 5.784578 TTGAGAGCGACTAATATGGCTAA 57.215 39.130 0.00 0.00 33.29 3.09
186 187 5.984695 TGAGAGCGACTAATATGGCTAAT 57.015 39.130 0.00 0.00 33.29 1.73
187 188 7.462571 TTGAGAGCGACTAATATGGCTAATA 57.537 36.000 0.00 0.00 33.29 0.98
188 189 7.089770 TGAGAGCGACTAATATGGCTAATAG 57.910 40.000 0.00 0.00 33.29 1.73
189 190 6.884836 TGAGAGCGACTAATATGGCTAATAGA 59.115 38.462 0.00 0.00 33.29 1.98
190 191 7.393515 TGAGAGCGACTAATATGGCTAATAGAA 59.606 37.037 0.00 0.00 33.29 2.10
191 192 8.123639 AGAGCGACTAATATGGCTAATAGAAA 57.876 34.615 0.00 0.00 33.29 2.52
192 193 8.754080 AGAGCGACTAATATGGCTAATAGAAAT 58.246 33.333 0.00 0.00 33.29 2.17
193 194 8.934507 AGCGACTAATATGGCTAATAGAAATC 57.065 34.615 0.00 0.00 31.07 2.17
194 195 8.754080 AGCGACTAATATGGCTAATAGAAATCT 58.246 33.333 0.00 0.00 31.07 2.40
195 196 9.372369 GCGACTAATATGGCTAATAGAAATCTT 57.628 33.333 0.00 0.00 0.00 2.40
198 199 9.877178 ACTAATATGGCTAATAGAAATCTTCCG 57.123 33.333 0.00 0.00 0.00 4.30
201 202 5.215252 TGGCTAATAGAAATCTTCCGAGG 57.785 43.478 0.00 0.00 0.00 4.63
202 203 4.040461 TGGCTAATAGAAATCTTCCGAGGG 59.960 45.833 0.00 0.00 0.00 4.30
203 204 4.040584 GGCTAATAGAAATCTTCCGAGGGT 59.959 45.833 0.00 0.00 0.00 4.34
204 205 5.231702 GCTAATAGAAATCTTCCGAGGGTC 58.768 45.833 0.00 0.00 0.00 4.46
205 206 5.221461 GCTAATAGAAATCTTCCGAGGGTCA 60.221 44.000 0.00 0.00 0.00 4.02
206 207 5.896073 AATAGAAATCTTCCGAGGGTCAT 57.104 39.130 0.00 0.00 0.00 3.06
207 208 3.828875 AGAAATCTTCCGAGGGTCATC 57.171 47.619 0.00 0.00 0.00 2.92
208 209 3.379452 AGAAATCTTCCGAGGGTCATCT 58.621 45.455 0.00 0.00 0.00 2.90
209 210 3.386402 AGAAATCTTCCGAGGGTCATCTC 59.614 47.826 0.00 0.00 0.00 2.75
210 211 1.710816 ATCTTCCGAGGGTCATCTCC 58.289 55.000 0.00 0.00 0.00 3.71
211 212 0.335019 TCTTCCGAGGGTCATCTCCA 59.665 55.000 0.00 0.00 0.00 3.86
212 213 1.195115 CTTCCGAGGGTCATCTCCAA 58.805 55.000 0.00 0.00 0.00 3.53
213 214 1.765314 CTTCCGAGGGTCATCTCCAAT 59.235 52.381 0.00 0.00 0.00 3.16
214 215 1.879575 TCCGAGGGTCATCTCCAATT 58.120 50.000 0.00 0.00 0.00 2.32
215 216 3.040655 TCCGAGGGTCATCTCCAATTA 57.959 47.619 0.00 0.00 0.00 1.40
216 217 3.380393 TCCGAGGGTCATCTCCAATTAA 58.620 45.455 0.00 0.00 0.00 1.40
217 218 3.134081 TCCGAGGGTCATCTCCAATTAAC 59.866 47.826 0.00 0.00 0.00 2.01
218 219 3.467803 CGAGGGTCATCTCCAATTAACC 58.532 50.000 0.00 0.00 0.00 2.85
219 220 3.744530 CGAGGGTCATCTCCAATTAACCC 60.745 52.174 0.00 0.00 45.52 4.11
220 221 3.662759 GGGTCATCTCCAATTAACCCA 57.337 47.619 3.53 0.00 44.72 4.51
221 222 3.976015 GGGTCATCTCCAATTAACCCAA 58.024 45.455 3.53 0.00 44.72 4.12
222 223 3.954258 GGGTCATCTCCAATTAACCCAAG 59.046 47.826 3.53 0.00 44.72 3.61
223 224 4.325030 GGGTCATCTCCAATTAACCCAAGA 60.325 45.833 3.53 0.00 44.72 3.02
224 225 5.261216 GGTCATCTCCAATTAACCCAAGAA 58.739 41.667 0.00 0.00 0.00 2.52
225 226 5.893824 GGTCATCTCCAATTAACCCAAGAAT 59.106 40.000 0.00 0.00 0.00 2.40
226 227 6.039829 GGTCATCTCCAATTAACCCAAGAATC 59.960 42.308 0.00 0.00 0.00 2.52
227 228 6.830838 GTCATCTCCAATTAACCCAAGAATCT 59.169 38.462 0.00 0.00 0.00 2.40
228 229 7.012799 GTCATCTCCAATTAACCCAAGAATCTC 59.987 40.741 0.00 0.00 0.00 2.75
229 230 6.642733 TCTCCAATTAACCCAAGAATCTCT 57.357 37.500 0.00 0.00 0.00 3.10
230 231 7.032598 TCTCCAATTAACCCAAGAATCTCTT 57.967 36.000 0.00 0.00 37.14 2.85
241 242 5.885230 CAAGAATCTCTTGCACCAATACA 57.115 39.130 3.60 0.00 46.03 2.29
242 243 5.634896 CAAGAATCTCTTGCACCAATACAC 58.365 41.667 3.60 0.00 46.03 2.90
243 244 3.935203 AGAATCTCTTGCACCAATACACG 59.065 43.478 0.00 0.00 0.00 4.49
244 245 3.610040 ATCTCTTGCACCAATACACGA 57.390 42.857 0.00 0.00 0.00 4.35
245 246 3.610040 TCTCTTGCACCAATACACGAT 57.390 42.857 0.00 0.00 0.00 3.73
246 247 3.261580 TCTCTTGCACCAATACACGATG 58.738 45.455 0.00 0.00 0.00 3.84
247 248 2.352651 CTCTTGCACCAATACACGATGG 59.647 50.000 0.00 0.00 42.60 3.51
260 261 4.108902 GATGGTTCGAGCGATGCA 57.891 55.556 0.67 0.00 0.00 3.96
261 262 1.638467 GATGGTTCGAGCGATGCAC 59.362 57.895 0.67 0.00 0.00 4.57
262 263 2.082437 GATGGTTCGAGCGATGCACG 62.082 60.000 0.67 2.20 43.31 5.34
263 264 3.554692 GGTTCGAGCGATGCACGG 61.555 66.667 8.63 0.00 42.33 4.94
264 265 2.506217 GTTCGAGCGATGCACGGA 60.506 61.111 8.63 0.00 42.33 4.69
265 266 2.506217 TTCGAGCGATGCACGGAC 60.506 61.111 8.63 0.00 42.33 4.79
266 267 4.829518 TCGAGCGATGCACGGACG 62.830 66.667 8.63 5.65 42.33 4.79
272 273 4.796231 GATGCACGGACGGCGAGT 62.796 66.667 16.62 7.84 0.00 4.18
273 274 4.373116 ATGCACGGACGGCGAGTT 62.373 61.111 16.62 0.00 0.00 3.01
274 275 2.877360 GATGCACGGACGGCGAGTTA 62.877 60.000 16.62 2.73 0.00 2.24
275 276 2.431260 GCACGGACGGCGAGTTAA 60.431 61.111 16.62 0.00 0.00 2.01
276 277 2.442188 GCACGGACGGCGAGTTAAG 61.442 63.158 16.62 0.00 0.00 1.85
277 278 2.126189 ACGGACGGCGAGTTAAGC 60.126 61.111 16.62 0.00 0.00 3.09
278 279 2.126228 CGGACGGCGAGTTAAGCA 60.126 61.111 16.62 0.00 36.08 3.91
279 280 1.518572 CGGACGGCGAGTTAAGCAT 60.519 57.895 16.62 0.00 36.08 3.79
280 281 1.480219 CGGACGGCGAGTTAAGCATC 61.480 60.000 16.62 0.00 36.08 3.91
281 282 1.480219 GGACGGCGAGTTAAGCATCG 61.480 60.000 16.62 1.35 41.79 3.84
282 283 0.524816 GACGGCGAGTTAAGCATCGA 60.525 55.000 16.62 0.00 41.40 3.59
283 284 0.801067 ACGGCGAGTTAAGCATCGAC 60.801 55.000 16.62 4.97 43.59 4.20
284 285 3.044809 GGCGAGTTAAGCATCGACA 57.955 52.632 8.42 0.00 46.31 4.35
285 286 0.645868 GGCGAGTTAAGCATCGACAC 59.354 55.000 8.42 0.00 46.31 3.67
286 287 0.645868 GCGAGTTAAGCATCGACACC 59.354 55.000 8.42 0.00 41.40 4.16
287 288 0.914551 CGAGTTAAGCATCGACACCG 59.085 55.000 0.00 0.00 41.40 4.94
288 289 0.645868 GAGTTAAGCATCGACACCGC 59.354 55.000 0.00 0.00 35.37 5.68
289 290 0.246635 AGTTAAGCATCGACACCGCT 59.753 50.000 0.00 0.00 37.68 5.52
291 292 1.060698 GTTAAGCATCGACACCGCTTC 59.939 52.381 14.29 1.60 44.53 3.86
292 293 0.459585 TAAGCATCGACACCGCTTCC 60.460 55.000 14.29 0.00 44.53 3.46
293 294 2.434185 GCATCGACACCGCTTCCA 60.434 61.111 0.00 0.00 35.37 3.53
294 295 2.032634 GCATCGACACCGCTTCCAA 61.033 57.895 0.00 0.00 35.37 3.53
295 296 1.573829 GCATCGACACCGCTTCCAAA 61.574 55.000 0.00 0.00 35.37 3.28
296 297 0.165944 CATCGACACCGCTTCCAAAC 59.834 55.000 0.00 0.00 35.37 2.93
297 298 0.034896 ATCGACACCGCTTCCAAACT 59.965 50.000 0.00 0.00 35.37 2.66
298 299 0.675083 TCGACACCGCTTCCAAACTA 59.325 50.000 0.00 0.00 35.37 2.24
299 300 1.274167 TCGACACCGCTTCCAAACTAT 59.726 47.619 0.00 0.00 35.37 2.12
300 301 1.659098 CGACACCGCTTCCAAACTATC 59.341 52.381 0.00 0.00 0.00 2.08
301 302 2.007608 GACACCGCTTCCAAACTATCC 58.992 52.381 0.00 0.00 0.00 2.59
302 303 1.349688 ACACCGCTTCCAAACTATCCA 59.650 47.619 0.00 0.00 0.00 3.41
303 304 2.026262 ACACCGCTTCCAAACTATCCAT 60.026 45.455 0.00 0.00 0.00 3.41
304 305 2.614057 CACCGCTTCCAAACTATCCATC 59.386 50.000 0.00 0.00 0.00 3.51
305 306 2.505819 ACCGCTTCCAAACTATCCATCT 59.494 45.455 0.00 0.00 0.00 2.90
306 307 3.134458 CCGCTTCCAAACTATCCATCTC 58.866 50.000 0.00 0.00 0.00 2.75
307 308 3.432186 CCGCTTCCAAACTATCCATCTCA 60.432 47.826 0.00 0.00 0.00 3.27
308 309 4.191544 CGCTTCCAAACTATCCATCTCAA 58.808 43.478 0.00 0.00 0.00 3.02
309 310 4.034510 CGCTTCCAAACTATCCATCTCAAC 59.965 45.833 0.00 0.00 0.00 3.18
310 311 4.034510 GCTTCCAAACTATCCATCTCAACG 59.965 45.833 0.00 0.00 0.00 4.10
311 312 5.414789 TTCCAAACTATCCATCTCAACGA 57.585 39.130 0.00 0.00 0.00 3.85
312 313 4.755411 TCCAAACTATCCATCTCAACGAC 58.245 43.478 0.00 0.00 0.00 4.34
313 314 4.221924 TCCAAACTATCCATCTCAACGACA 59.778 41.667 0.00 0.00 0.00 4.35
314 315 4.935205 CCAAACTATCCATCTCAACGACAA 59.065 41.667 0.00 0.00 0.00 3.18
315 316 5.586243 CCAAACTATCCATCTCAACGACAAT 59.414 40.000 0.00 0.00 0.00 2.71
316 317 6.238211 CCAAACTATCCATCTCAACGACAATC 60.238 42.308 0.00 0.00 0.00 2.67
317 318 4.611943 ACTATCCATCTCAACGACAATCG 58.388 43.478 0.00 0.00 46.93 3.34
318 319 2.293677 TCCATCTCAACGACAATCGG 57.706 50.000 2.97 0.00 45.59 4.18
319 320 0.652592 CCATCTCAACGACAATCGGC 59.347 55.000 2.97 0.00 45.59 5.54
320 321 1.358877 CATCTCAACGACAATCGGCA 58.641 50.000 2.97 0.00 45.59 5.69
321 322 1.731709 CATCTCAACGACAATCGGCAA 59.268 47.619 2.97 0.00 45.59 4.52
322 323 1.144969 TCTCAACGACAATCGGCAAC 58.855 50.000 2.97 0.00 45.59 4.17
323 324 1.148310 CTCAACGACAATCGGCAACT 58.852 50.000 2.97 0.00 45.59 3.16
324 325 1.126846 CTCAACGACAATCGGCAACTC 59.873 52.381 2.97 0.00 45.59 3.01
325 326 0.865111 CAACGACAATCGGCAACTCA 59.135 50.000 2.97 0.00 45.59 3.41
326 327 1.136252 CAACGACAATCGGCAACTCAG 60.136 52.381 2.97 0.00 45.59 3.35
327 328 0.033504 ACGACAATCGGCAACTCAGT 59.966 50.000 2.97 0.00 45.59 3.41
328 329 1.271379 ACGACAATCGGCAACTCAGTA 59.729 47.619 2.97 0.00 45.59 2.74
329 330 2.094182 ACGACAATCGGCAACTCAGTAT 60.094 45.455 2.97 0.00 45.59 2.12
330 331 2.282555 CGACAATCGGCAACTCAGTATG 59.717 50.000 0.00 0.00 36.00 2.39
331 332 2.609459 GACAATCGGCAACTCAGTATGG 59.391 50.000 0.00 0.00 36.16 2.74
332 333 2.027192 ACAATCGGCAACTCAGTATGGT 60.027 45.455 0.00 0.00 36.16 3.55
333 334 2.315925 ATCGGCAACTCAGTATGGTG 57.684 50.000 0.00 0.00 36.16 4.17
334 335 0.249120 TCGGCAACTCAGTATGGTGG 59.751 55.000 0.00 0.00 36.16 4.61
335 336 0.249120 CGGCAACTCAGTATGGTGGA 59.751 55.000 0.00 0.00 36.16 4.02
336 337 1.740380 CGGCAACTCAGTATGGTGGAG 60.740 57.143 0.00 0.00 36.16 3.86
337 338 1.407437 GGCAACTCAGTATGGTGGAGG 60.407 57.143 0.00 0.00 36.16 4.30
338 339 1.407437 GCAACTCAGTATGGTGGAGGG 60.407 57.143 0.00 0.00 36.16 4.30
339 340 0.912486 AACTCAGTATGGTGGAGGGC 59.088 55.000 0.00 0.00 36.16 5.19
340 341 1.330655 ACTCAGTATGGTGGAGGGCG 61.331 60.000 0.00 0.00 36.16 6.13
341 342 1.001120 TCAGTATGGTGGAGGGCGA 59.999 57.895 0.00 0.00 36.16 5.54
342 343 1.043116 TCAGTATGGTGGAGGGCGAG 61.043 60.000 0.00 0.00 36.16 5.03
343 344 1.043116 CAGTATGGTGGAGGGCGAGA 61.043 60.000 0.00 0.00 0.00 4.04
344 345 0.757188 AGTATGGTGGAGGGCGAGAG 60.757 60.000 0.00 0.00 0.00 3.20
356 357 2.125350 CGAGAGCCAGCCCTTCAC 60.125 66.667 0.00 0.00 0.00 3.18
357 358 2.125350 GAGAGCCAGCCCTTCACG 60.125 66.667 0.00 0.00 0.00 4.35
358 359 4.400961 AGAGCCAGCCCTTCACGC 62.401 66.667 0.00 0.00 0.00 5.34
359 360 4.704833 GAGCCAGCCCTTCACGCA 62.705 66.667 0.00 0.00 0.00 5.24
360 361 3.984193 GAGCCAGCCCTTCACGCAT 62.984 63.158 0.00 0.00 0.00 4.73
361 362 3.818787 GCCAGCCCTTCACGCATG 61.819 66.667 0.00 0.00 0.00 4.06
362 363 3.818787 CCAGCCCTTCACGCATGC 61.819 66.667 7.91 7.91 0.00 4.06
363 364 3.057548 CAGCCCTTCACGCATGCA 61.058 61.111 19.57 0.00 0.00 3.96
364 365 2.044650 AGCCCTTCACGCATGCAT 60.045 55.556 19.57 0.00 0.00 3.96
365 366 2.103538 GCCCTTCACGCATGCATG 59.896 61.111 22.70 22.70 0.00 4.06
378 379 3.793797 CATGCATGCATTTTCTCTCCA 57.206 42.857 30.32 0.00 33.90 3.86
389 390 5.048434 GCATTTTCTCTCCACTGTAAAAGCT 60.048 40.000 0.00 0.00 0.00 3.74
397 398 3.118408 TCCACTGTAAAAGCTGACACTGT 60.118 43.478 0.00 0.00 0.00 3.55
399 400 4.122776 CACTGTAAAAGCTGACACTGTCT 58.877 43.478 10.54 0.00 33.15 3.41
402 403 4.119862 TGTAAAAGCTGACACTGTCTGAC 58.880 43.478 17.70 0.00 34.21 3.51
403 404 1.858091 AAAGCTGACACTGTCTGACG 58.142 50.000 17.70 0.99 34.21 4.35
407 408 1.135046 CTGACACTGTCTGACGCAAG 58.865 55.000 10.54 0.00 34.21 4.01
412 413 6.289214 TGACACTGTCTGACGCAAGTACAT 62.289 45.833 10.54 0.00 41.96 2.29
473 474 9.255304 GAAAAGAAATTGTATAAAACCTGCACA 57.745 29.630 0.00 0.00 0.00 4.57
485 486 5.534207 AAACCTGCACAAATCTTGATGAA 57.466 34.783 0.00 0.00 0.00 2.57
490 491 5.278610 CCTGCACAAATCTTGATGAAACTGA 60.279 40.000 0.00 0.00 0.00 3.41
491 492 6.335471 TGCACAAATCTTGATGAAACTGAT 57.665 33.333 0.00 0.00 0.00 2.90
547 556 4.576053 ACCGGTAAATTTACTAATTCGCCC 59.424 41.667 23.89 6.91 32.85 6.13
553 562 8.676401 GGTAAATTTACTAATTCGCCCAAACTA 58.324 33.333 23.89 0.00 32.85 2.24
560 569 2.319136 TTCGCCCAAACTATATGCGT 57.681 45.000 0.00 0.00 45.06 5.24
623 632 2.939460 CCGATTCGGCCAATTTCTTT 57.061 45.000 12.95 0.00 41.17 2.52
691 700 4.101790 CGTGTTGCGGCACCATCC 62.102 66.667 2.85 0.00 36.08 3.51
702 711 3.470888 ACCATCCGGGAAGCGAGG 61.471 66.667 0.00 1.07 41.15 4.63
766 775 2.178521 GTGGCGACGACTGACGAT 59.821 61.111 0.65 0.00 45.77 3.73
774 783 0.179171 ACGACTGACGATAGCAACCG 60.179 55.000 6.52 0.00 45.77 4.44
793 802 1.202200 CGCCGTCGAGAAGAAGAAGAT 60.202 52.381 0.00 0.00 38.10 2.40
871 887 2.449031 ATCCGTTGAACCTGCTCGCA 62.449 55.000 0.00 0.00 0.00 5.10
872 888 2.034879 CCGTTGAACCTGCTCGCAT 61.035 57.895 0.00 0.00 0.00 4.73
873 889 1.133253 CGTTGAACCTGCTCGCATG 59.867 57.895 0.00 0.00 0.00 4.06
874 890 1.154150 GTTGAACCTGCTCGCATGC 60.154 57.895 7.91 7.91 0.00 4.06
875 891 1.600356 TTGAACCTGCTCGCATGCA 60.600 52.632 19.57 4.02 41.05 3.96
876 892 0.961857 TTGAACCTGCTCGCATGCAT 60.962 50.000 19.57 0.00 42.48 3.96
877 893 1.063649 GAACCTGCTCGCATGCATG 59.936 57.895 22.70 22.70 42.48 4.06
887 903 3.214123 CATGCATGCCCCGTCCTG 61.214 66.667 14.93 0.00 0.00 3.86
986 1013 4.817063 CGCCAACCATCGCAAGCG 62.817 66.667 8.36 8.36 41.35 4.68
1015 1046 1.227527 CTAATGGCGCCGATCCACA 60.228 57.895 23.90 1.41 36.26 4.17
1366 1424 3.117171 CTCAGCTGCAGTCCACGC 61.117 66.667 16.64 0.00 0.00 5.34
1367 1425 3.586461 CTCAGCTGCAGTCCACGCT 62.586 63.158 16.64 2.29 0.00 5.07
1368 1426 3.117171 CAGCTGCAGTCCACGCTC 61.117 66.667 16.64 0.00 0.00 5.03
1513 1610 5.732633 TGGCAAATGAATAAGGGAATGTTG 58.267 37.500 0.00 0.00 0.00 3.33
1608 1721 2.438434 CCACCGGCAACCTCATCC 60.438 66.667 0.00 0.00 0.00 3.51
1615 1728 0.324645 GGCAACCTCATCCCCATGTT 60.325 55.000 0.00 0.00 0.00 2.71
1737 1850 1.661821 GAGGCAGCCTACGCGTATG 60.662 63.158 20.91 18.23 41.18 2.39
2131 2247 1.485066 CTACTACCCCACCATGGACAC 59.515 57.143 21.47 0.00 40.96 3.67
2137 2253 0.322816 CCCACCATGGACACCTCTTG 60.323 60.000 21.47 2.90 40.96 3.02
2146 2262 2.025793 TGGACACCTCTTGAAAACCACA 60.026 45.455 0.00 0.00 0.00 4.17
2147 2263 3.222603 GGACACCTCTTGAAAACCACAT 58.777 45.455 0.00 0.00 0.00 3.21
2150 2266 3.885297 ACACCTCTTGAAAACCACATCAG 59.115 43.478 0.00 0.00 0.00 2.90
2151 2267 3.885297 CACCTCTTGAAAACCACATCAGT 59.115 43.478 0.00 0.00 0.00 3.41
2216 2570 2.357517 GCAGCTGCAGTACCACGT 60.358 61.111 33.36 0.00 41.59 4.49
2218 2572 0.669318 GCAGCTGCAGTACCACGTAA 60.669 55.000 33.36 0.00 41.59 3.18
2219 2573 1.790755 CAGCTGCAGTACCACGTAAA 58.209 50.000 16.64 0.00 0.00 2.01
2220 2574 1.459592 CAGCTGCAGTACCACGTAAAC 59.540 52.381 16.64 0.00 0.00 2.01
2221 2575 0.437295 GCTGCAGTACCACGTAAACG 59.563 55.000 16.64 0.04 46.33 3.60
2242 2596 8.891671 AAACGTACGTATATATGGATTTTGGT 57.108 30.769 23.12 0.00 0.00 3.67
2243 2597 8.891671 AACGTACGTATATATGGATTTTGGTT 57.108 30.769 23.12 0.00 0.00 3.67
2244 2598 8.891671 ACGTACGTATATATGGATTTTGGTTT 57.108 30.769 21.41 0.00 0.00 3.27
2245 2599 9.328845 ACGTACGTATATATGGATTTTGGTTTT 57.671 29.630 21.41 0.00 0.00 2.43
2261 2615 7.881643 TTTGGTTTTTGGATAATGAACATCG 57.118 32.000 0.00 0.00 0.00 3.84
2282 2636 2.857592 AAGCATGGAATGATGCGTTC 57.142 45.000 0.00 0.00 45.83 3.95
2289 2643 1.195448 GGAATGATGCGTTCGCCTATG 59.805 52.381 14.44 0.00 30.83 2.23
2290 2644 1.867233 GAATGATGCGTTCGCCTATGT 59.133 47.619 14.44 0.00 0.00 2.29
2291 2645 2.812358 ATGATGCGTTCGCCTATGTA 57.188 45.000 14.44 0.00 0.00 2.29
2367 2724 2.768527 TCAACCAAAATGGGTCAGCAAA 59.231 40.909 0.87 0.00 43.37 3.68
2563 2921 2.843701 CCACAGATCTGGATAAGCCAC 58.156 52.381 26.08 0.00 43.33 5.01
2732 3091 3.865011 TTTCAAGCACAGCAAGAACAA 57.135 38.095 0.00 0.00 0.00 2.83
2794 3153 1.148273 ACCCTTCTCAAGCGCAACA 59.852 52.632 11.47 0.00 0.00 3.33
2805 3164 2.753966 GCGCAACACAGGCATCGAT 61.754 57.895 0.30 0.00 0.00 3.59
3009 3368 7.670364 AGGTTCCACCAAAAATAAGATTCTTG 58.330 34.615 9.22 0.00 41.95 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.542370 TGAAATTCATTTTTACCCCGCAAAAA 59.458 30.769 0.00 0.00 38.74 1.94
17 18 6.055588 TGAAATTCATTTTTACCCCGCAAAA 58.944 32.000 0.00 0.00 0.00 2.44
18 19 5.611374 TGAAATTCATTTTTACCCCGCAAA 58.389 33.333 0.00 0.00 0.00 3.68
19 20 5.215252 TGAAATTCATTTTTACCCCGCAA 57.785 34.783 0.00 0.00 0.00 4.85
20 21 4.873746 TGAAATTCATTTTTACCCCGCA 57.126 36.364 0.00 0.00 0.00 5.69
21 22 7.039270 AGTAATGAAATTCATTTTTACCCCGC 58.961 34.615 23.98 6.29 44.03 6.13
22 23 8.247562 TGAGTAATGAAATTCATTTTTACCCCG 58.752 33.333 23.98 0.00 44.03 5.73
23 24 9.936759 TTGAGTAATGAAATTCATTTTTACCCC 57.063 29.630 23.98 12.44 44.03 4.95
28 29 9.933723 CCTCCTTGAGTAATGAAATTCATTTTT 57.066 29.630 23.98 13.74 44.03 1.94
29 30 8.037166 GCCTCCTTGAGTAATGAAATTCATTTT 58.963 33.333 23.98 14.05 44.03 1.82
30 31 7.364144 GGCCTCCTTGAGTAATGAAATTCATTT 60.364 37.037 23.98 9.31 44.03 2.32
32 33 5.595952 GGCCTCCTTGAGTAATGAAATTCAT 59.404 40.000 2.07 2.07 39.09 2.57
33 34 4.949856 GGCCTCCTTGAGTAATGAAATTCA 59.050 41.667 0.00 0.00 37.87 2.57
34 35 4.035675 CGGCCTCCTTGAGTAATGAAATTC 59.964 45.833 0.00 0.00 37.87 2.17
35 36 3.947834 CGGCCTCCTTGAGTAATGAAATT 59.052 43.478 0.00 0.00 41.28 1.82
36 37 3.054361 ACGGCCTCCTTGAGTAATGAAAT 60.054 43.478 0.00 0.00 0.00 2.17
37 38 2.304761 ACGGCCTCCTTGAGTAATGAAA 59.695 45.455 0.00 0.00 0.00 2.69
38 39 1.906574 ACGGCCTCCTTGAGTAATGAA 59.093 47.619 0.00 0.00 0.00 2.57
39 40 1.568504 ACGGCCTCCTTGAGTAATGA 58.431 50.000 0.00 0.00 0.00 2.57
40 41 2.280628 GAACGGCCTCCTTGAGTAATG 58.719 52.381 0.00 0.00 0.00 1.90
41 42 1.906574 TGAACGGCCTCCTTGAGTAAT 59.093 47.619 0.00 0.00 0.00 1.89
42 43 1.275291 CTGAACGGCCTCCTTGAGTAA 59.725 52.381 0.00 0.00 0.00 2.24
43 44 0.895530 CTGAACGGCCTCCTTGAGTA 59.104 55.000 0.00 0.00 0.00 2.59
44 45 1.674057 CTGAACGGCCTCCTTGAGT 59.326 57.895 0.00 0.00 0.00 3.41
45 46 1.743252 GCTGAACGGCCTCCTTGAG 60.743 63.158 0.00 0.00 0.00 3.02
46 47 2.347490 GCTGAACGGCCTCCTTGA 59.653 61.111 0.00 0.00 0.00 3.02
54 55 1.448985 TCTTTGTATGGCTGAACGGC 58.551 50.000 0.00 0.00 38.97 5.68
55 56 4.701956 AAATCTTTGTATGGCTGAACGG 57.298 40.909 0.00 0.00 0.00 4.44
56 57 6.176975 TGTAAATCTTTGTATGGCTGAACG 57.823 37.500 0.00 0.00 0.00 3.95
57 58 8.028938 ACATTGTAAATCTTTGTATGGCTGAAC 58.971 33.333 0.00 0.00 0.00 3.18
58 59 8.121305 ACATTGTAAATCTTTGTATGGCTGAA 57.879 30.769 0.00 0.00 0.00 3.02
59 60 7.413988 CGACATTGTAAATCTTTGTATGGCTGA 60.414 37.037 0.00 0.00 0.00 4.26
60 61 6.688385 CGACATTGTAAATCTTTGTATGGCTG 59.312 38.462 0.00 0.00 0.00 4.85
61 62 6.374333 ACGACATTGTAAATCTTTGTATGGCT 59.626 34.615 0.00 0.00 0.00 4.75
62 63 6.468956 CACGACATTGTAAATCTTTGTATGGC 59.531 38.462 0.00 0.00 0.00 4.40
63 64 6.468956 GCACGACATTGTAAATCTTTGTATGG 59.531 38.462 0.00 0.00 0.00 2.74
64 65 7.020602 TGCACGACATTGTAAATCTTTGTATG 58.979 34.615 0.00 0.00 0.00 2.39
65 66 7.139896 TGCACGACATTGTAAATCTTTGTAT 57.860 32.000 0.00 0.00 0.00 2.29
66 67 6.546972 TGCACGACATTGTAAATCTTTGTA 57.453 33.333 0.00 0.00 0.00 2.41
67 68 5.431420 TGCACGACATTGTAAATCTTTGT 57.569 34.783 0.00 0.00 0.00 2.83
68 69 5.164158 GCTTGCACGACATTGTAAATCTTTG 60.164 40.000 0.00 0.00 0.00 2.77
69 70 4.917415 GCTTGCACGACATTGTAAATCTTT 59.083 37.500 0.00 0.00 0.00 2.52
70 71 4.475944 GCTTGCACGACATTGTAAATCTT 58.524 39.130 0.00 0.00 0.00 2.40
71 72 3.119849 GGCTTGCACGACATTGTAAATCT 60.120 43.478 0.00 0.00 0.00 2.40
72 73 3.171277 GGCTTGCACGACATTGTAAATC 58.829 45.455 0.00 0.00 0.00 2.17
73 74 2.556189 TGGCTTGCACGACATTGTAAAT 59.444 40.909 0.00 0.00 0.00 1.40
74 75 1.950216 TGGCTTGCACGACATTGTAAA 59.050 42.857 0.00 0.00 0.00 2.01
75 76 1.535028 CTGGCTTGCACGACATTGTAA 59.465 47.619 0.00 0.00 0.00 2.41
76 77 1.155889 CTGGCTTGCACGACATTGTA 58.844 50.000 0.00 0.00 0.00 2.41
77 78 0.534877 TCTGGCTTGCACGACATTGT 60.535 50.000 0.00 0.00 0.00 2.71
78 79 0.806868 ATCTGGCTTGCACGACATTG 59.193 50.000 0.00 0.00 0.00 2.82
79 80 1.089920 GATCTGGCTTGCACGACATT 58.910 50.000 0.00 0.00 0.00 2.71
80 81 0.745845 GGATCTGGCTTGCACGACAT 60.746 55.000 0.00 0.00 0.00 3.06
81 82 1.375908 GGATCTGGCTTGCACGACA 60.376 57.895 0.00 0.00 0.00 4.35
82 83 2.109126 GGGATCTGGCTTGCACGAC 61.109 63.158 0.00 0.00 0.00 4.34
83 84 2.123248 TTGGGATCTGGCTTGCACGA 62.123 55.000 0.00 0.00 0.00 4.35
84 85 1.675310 TTGGGATCTGGCTTGCACG 60.675 57.895 0.00 0.00 0.00 5.34
85 86 1.598701 GGTTGGGATCTGGCTTGCAC 61.599 60.000 0.00 0.00 0.00 4.57
86 87 1.304381 GGTTGGGATCTGGCTTGCA 60.304 57.895 0.00 0.00 0.00 4.08
87 88 1.304381 TGGTTGGGATCTGGCTTGC 60.304 57.895 0.00 0.00 0.00 4.01
88 89 0.251297 TGTGGTTGGGATCTGGCTTG 60.251 55.000 0.00 0.00 0.00 4.01
89 90 0.251341 GTGTGGTTGGGATCTGGCTT 60.251 55.000 0.00 0.00 0.00 4.35
90 91 1.380302 GTGTGGTTGGGATCTGGCT 59.620 57.895 0.00 0.00 0.00 4.75
91 92 2.040544 CGTGTGGTTGGGATCTGGC 61.041 63.158 0.00 0.00 0.00 4.85
92 93 1.377202 CCGTGTGGTTGGGATCTGG 60.377 63.158 0.00 0.00 0.00 3.86
93 94 2.040544 GCCGTGTGGTTGGGATCTG 61.041 63.158 0.00 0.00 37.67 2.90
94 95 2.351276 GCCGTGTGGTTGGGATCT 59.649 61.111 0.00 0.00 37.67 2.75
95 96 3.124921 CGCCGTGTGGTTGGGATC 61.125 66.667 0.00 0.00 37.67 3.36
96 97 4.715523 CCGCCGTGTGGTTGGGAT 62.716 66.667 0.00 0.00 37.67 3.85
110 111 2.496291 ATAGTACCCCTCGCACCGC 61.496 63.158 0.00 0.00 0.00 5.68
111 112 1.105167 TCATAGTACCCCTCGCACCG 61.105 60.000 0.00 0.00 0.00 4.94
112 113 0.388294 GTCATAGTACCCCTCGCACC 59.612 60.000 0.00 0.00 0.00 5.01
113 114 0.388294 GGTCATAGTACCCCTCGCAC 59.612 60.000 0.00 0.00 33.02 5.34
114 115 0.032912 TGGTCATAGTACCCCTCGCA 60.033 55.000 0.00 0.00 38.90 5.10
115 116 1.339097 ATGGTCATAGTACCCCTCGC 58.661 55.000 0.00 0.00 38.90 5.03
116 117 3.056749 GCTTATGGTCATAGTACCCCTCG 60.057 52.174 0.00 0.00 38.90 4.63
117 118 3.056749 CGCTTATGGTCATAGTACCCCTC 60.057 52.174 0.00 0.00 38.90 4.30
118 119 2.897969 CGCTTATGGTCATAGTACCCCT 59.102 50.000 0.00 0.00 38.90 4.79
119 120 2.028385 CCGCTTATGGTCATAGTACCCC 60.028 54.545 0.00 0.00 38.90 4.95
120 121 2.612221 GCCGCTTATGGTCATAGTACCC 60.612 54.545 0.00 0.00 38.90 3.69
121 122 2.036733 TGCCGCTTATGGTCATAGTACC 59.963 50.000 0.00 0.00 40.19 3.34
122 123 3.380479 TGCCGCTTATGGTCATAGTAC 57.620 47.619 0.00 0.00 0.00 2.73
123 124 3.639561 TCTTGCCGCTTATGGTCATAGTA 59.360 43.478 0.00 0.00 0.00 1.82
124 125 2.434336 TCTTGCCGCTTATGGTCATAGT 59.566 45.455 0.00 0.00 0.00 2.12
125 126 3.062763 CTCTTGCCGCTTATGGTCATAG 58.937 50.000 0.00 0.00 0.00 2.23
126 127 2.806745 GCTCTTGCCGCTTATGGTCATA 60.807 50.000 0.00 0.00 0.00 2.15
127 128 1.959042 CTCTTGCCGCTTATGGTCAT 58.041 50.000 0.00 0.00 0.00 3.06
128 129 0.744414 GCTCTTGCCGCTTATGGTCA 60.744 55.000 0.00 0.00 0.00 4.02
129 130 0.744414 TGCTCTTGCCGCTTATGGTC 60.744 55.000 0.00 0.00 38.71 4.02
130 131 0.107017 ATGCTCTTGCCGCTTATGGT 60.107 50.000 0.00 0.00 38.71 3.55
131 132 0.309922 CATGCTCTTGCCGCTTATGG 59.690 55.000 0.00 0.00 38.71 2.74
132 133 1.003116 GTCATGCTCTTGCCGCTTATG 60.003 52.381 0.00 0.00 38.71 1.90
133 134 1.134280 AGTCATGCTCTTGCCGCTTAT 60.134 47.619 0.00 0.00 38.71 1.73
134 135 0.250234 AGTCATGCTCTTGCCGCTTA 59.750 50.000 0.00 0.00 38.71 3.09
135 136 0.250234 TAGTCATGCTCTTGCCGCTT 59.750 50.000 0.00 0.00 38.71 4.68
136 137 0.250234 TTAGTCATGCTCTTGCCGCT 59.750 50.000 0.00 0.00 38.71 5.52
137 138 0.375106 GTTAGTCATGCTCTTGCCGC 59.625 55.000 0.00 0.00 38.71 6.53
138 139 1.662629 CTGTTAGTCATGCTCTTGCCG 59.337 52.381 0.00 0.00 38.71 5.69
139 140 2.417933 CACTGTTAGTCATGCTCTTGCC 59.582 50.000 0.00 0.00 38.71 4.52
140 141 3.070018 ACACTGTTAGTCATGCTCTTGC 58.930 45.455 0.00 0.00 40.20 4.01
141 142 5.679734 AAACACTGTTAGTCATGCTCTTG 57.320 39.130 0.00 0.00 0.00 3.02
142 143 5.822519 TCAAAACACTGTTAGTCATGCTCTT 59.177 36.000 0.00 0.00 0.00 2.85
143 144 5.368145 TCAAAACACTGTTAGTCATGCTCT 58.632 37.500 0.00 0.00 0.00 4.09
144 145 5.466728 TCTCAAAACACTGTTAGTCATGCTC 59.533 40.000 0.00 0.00 0.00 4.26
145 146 5.368145 TCTCAAAACACTGTTAGTCATGCT 58.632 37.500 0.00 0.00 0.00 3.79
146 147 5.673337 TCTCAAAACACTGTTAGTCATGC 57.327 39.130 0.00 0.00 0.00 4.06
147 148 5.613360 CGCTCTCAAAACACTGTTAGTCATG 60.613 44.000 0.00 0.00 0.00 3.07
148 149 4.449068 CGCTCTCAAAACACTGTTAGTCAT 59.551 41.667 0.00 0.00 0.00 3.06
149 150 3.802139 CGCTCTCAAAACACTGTTAGTCA 59.198 43.478 0.00 0.00 0.00 3.41
150 151 4.049186 TCGCTCTCAAAACACTGTTAGTC 58.951 43.478 0.00 0.00 0.00 2.59
151 152 3.802685 GTCGCTCTCAAAACACTGTTAGT 59.197 43.478 0.00 0.00 0.00 2.24
152 153 4.051922 AGTCGCTCTCAAAACACTGTTAG 58.948 43.478 0.00 0.00 0.00 2.34
153 154 4.054780 AGTCGCTCTCAAAACACTGTTA 57.945 40.909 0.00 0.00 0.00 2.41
154 155 2.906354 AGTCGCTCTCAAAACACTGTT 58.094 42.857 0.00 0.00 0.00 3.16
155 156 2.604046 AGTCGCTCTCAAAACACTGT 57.396 45.000 0.00 0.00 0.00 3.55
156 157 6.237942 CCATATTAGTCGCTCTCAAAACACTG 60.238 42.308 0.00 0.00 0.00 3.66
157 158 5.812642 CCATATTAGTCGCTCTCAAAACACT 59.187 40.000 0.00 0.00 0.00 3.55
158 159 5.502544 GCCATATTAGTCGCTCTCAAAACAC 60.503 44.000 0.00 0.00 0.00 3.32
159 160 4.570772 GCCATATTAGTCGCTCTCAAAACA 59.429 41.667 0.00 0.00 0.00 2.83
160 161 4.811557 AGCCATATTAGTCGCTCTCAAAAC 59.188 41.667 0.00 0.00 0.00 2.43
161 162 5.023533 AGCCATATTAGTCGCTCTCAAAA 57.976 39.130 0.00 0.00 0.00 2.44
162 163 4.672587 AGCCATATTAGTCGCTCTCAAA 57.327 40.909 0.00 0.00 0.00 2.69
163 164 5.784578 TTAGCCATATTAGTCGCTCTCAA 57.215 39.130 0.00 0.00 32.76 3.02
164 165 5.984695 ATTAGCCATATTAGTCGCTCTCA 57.015 39.130 0.00 0.00 32.76 3.27
165 166 7.323049 TCTATTAGCCATATTAGTCGCTCTC 57.677 40.000 0.00 0.00 32.76 3.20
166 167 7.704578 TTCTATTAGCCATATTAGTCGCTCT 57.295 36.000 0.00 0.00 32.76 4.09
167 168 8.934507 ATTTCTATTAGCCATATTAGTCGCTC 57.065 34.615 0.00 0.00 32.76 5.03
168 169 8.754080 AGATTTCTATTAGCCATATTAGTCGCT 58.246 33.333 0.00 0.00 35.34 4.93
169 170 8.934507 AGATTTCTATTAGCCATATTAGTCGC 57.065 34.615 0.00 0.00 0.00 5.19
172 173 9.877178 CGGAAGATTTCTATTAGCCATATTAGT 57.123 33.333 0.00 0.00 0.00 2.24
175 176 8.043710 CCTCGGAAGATTTCTATTAGCCATATT 58.956 37.037 0.00 0.00 40.84 1.28
176 177 7.365117 CCCTCGGAAGATTTCTATTAGCCATAT 60.365 40.741 0.00 0.00 40.84 1.78
177 178 6.070767 CCCTCGGAAGATTTCTATTAGCCATA 60.071 42.308 0.00 0.00 40.84 2.74
178 179 5.280215 CCCTCGGAAGATTTCTATTAGCCAT 60.280 44.000 0.00 0.00 40.84 4.40
179 180 4.040461 CCCTCGGAAGATTTCTATTAGCCA 59.960 45.833 0.00 0.00 40.84 4.75
180 181 4.040584 ACCCTCGGAAGATTTCTATTAGCC 59.959 45.833 0.00 0.00 40.84 3.93
181 182 5.216614 ACCCTCGGAAGATTTCTATTAGC 57.783 43.478 0.00 0.00 40.84 3.09
182 183 6.406692 TGACCCTCGGAAGATTTCTATTAG 57.593 41.667 0.00 0.00 40.84 1.73
183 184 6.782988 AGATGACCCTCGGAAGATTTCTATTA 59.217 38.462 0.00 0.00 40.84 0.98
184 185 5.604650 AGATGACCCTCGGAAGATTTCTATT 59.395 40.000 0.00 0.00 40.84 1.73
185 186 5.151454 AGATGACCCTCGGAAGATTTCTAT 58.849 41.667 0.00 0.00 40.84 1.98
186 187 4.547671 AGATGACCCTCGGAAGATTTCTA 58.452 43.478 0.00 0.00 40.84 2.10
187 188 3.379452 AGATGACCCTCGGAAGATTTCT 58.621 45.455 0.00 0.00 40.84 2.52
188 189 3.493524 GGAGATGACCCTCGGAAGATTTC 60.494 52.174 0.00 0.00 40.84 2.17
189 190 2.436173 GGAGATGACCCTCGGAAGATTT 59.564 50.000 0.00 0.00 40.84 2.17
190 191 2.043227 GGAGATGACCCTCGGAAGATT 58.957 52.381 0.00 0.00 40.84 2.40
191 192 1.062886 TGGAGATGACCCTCGGAAGAT 60.063 52.381 0.00 0.00 40.84 2.40
192 193 0.335019 TGGAGATGACCCTCGGAAGA 59.665 55.000 0.00 0.00 34.08 2.87
193 194 1.195115 TTGGAGATGACCCTCGGAAG 58.805 55.000 0.00 0.00 34.08 3.46
194 195 1.879575 ATTGGAGATGACCCTCGGAA 58.120 50.000 0.00 0.00 34.08 4.30
195 196 1.879575 AATTGGAGATGACCCTCGGA 58.120 50.000 0.00 0.00 34.08 4.55
196 197 3.467803 GTTAATTGGAGATGACCCTCGG 58.532 50.000 0.00 0.00 34.08 4.63
197 198 3.467803 GGTTAATTGGAGATGACCCTCG 58.532 50.000 0.00 0.00 34.08 4.63
198 199 3.202151 TGGGTTAATTGGAGATGACCCTC 59.798 47.826 10.41 0.00 45.49 4.30
199 200 3.197983 TGGGTTAATTGGAGATGACCCT 58.802 45.455 10.41 0.00 45.49 4.34
200 201 3.662759 TGGGTTAATTGGAGATGACCC 57.337 47.619 2.46 2.46 45.49 4.46
201 202 4.855340 TCTTGGGTTAATTGGAGATGACC 58.145 43.478 0.00 0.00 0.00 4.02
202 203 6.830838 AGATTCTTGGGTTAATTGGAGATGAC 59.169 38.462 0.00 0.00 0.00 3.06
203 204 6.973642 AGATTCTTGGGTTAATTGGAGATGA 58.026 36.000 0.00 0.00 0.00 2.92
204 205 7.059156 AGAGATTCTTGGGTTAATTGGAGATG 58.941 38.462 0.00 0.00 0.00 2.90
205 206 7.218314 AGAGATTCTTGGGTTAATTGGAGAT 57.782 36.000 0.00 0.00 0.00 2.75
206 207 6.642733 AGAGATTCTTGGGTTAATTGGAGA 57.357 37.500 0.00 0.00 0.00 3.71
220 221 4.393062 CGTGTATTGGTGCAAGAGATTCTT 59.607 41.667 0.00 0.00 37.14 2.52
221 222 3.935203 CGTGTATTGGTGCAAGAGATTCT 59.065 43.478 0.00 0.00 0.00 2.40
222 223 3.932710 TCGTGTATTGGTGCAAGAGATTC 59.067 43.478 0.00 0.00 0.00 2.52
223 224 3.937814 TCGTGTATTGGTGCAAGAGATT 58.062 40.909 0.00 0.00 0.00 2.40
224 225 3.610040 TCGTGTATTGGTGCAAGAGAT 57.390 42.857 0.00 0.00 0.00 2.75
225 226 3.261580 CATCGTGTATTGGTGCAAGAGA 58.738 45.455 0.00 0.00 32.82 3.10
226 227 2.352651 CCATCGTGTATTGGTGCAAGAG 59.647 50.000 0.00 0.00 32.82 2.85
227 228 2.290008 ACCATCGTGTATTGGTGCAAGA 60.290 45.455 0.00 0.00 44.49 3.02
228 229 2.083774 ACCATCGTGTATTGGTGCAAG 58.916 47.619 0.00 0.00 44.49 4.01
229 230 2.192664 ACCATCGTGTATTGGTGCAA 57.807 45.000 0.00 0.00 44.49 4.08
230 231 2.080693 GAACCATCGTGTATTGGTGCA 58.919 47.619 0.00 0.00 45.44 4.57
231 232 1.062002 CGAACCATCGTGTATTGGTGC 59.938 52.381 0.00 0.00 45.44 5.01
232 233 2.603110 CTCGAACCATCGTGTATTGGTG 59.397 50.000 0.00 0.00 45.44 4.17
243 244 1.638467 GTGCATCGCTCGAACCATC 59.362 57.895 0.00 0.00 0.00 3.51
244 245 2.167219 CGTGCATCGCTCGAACCAT 61.167 57.895 4.55 0.00 46.28 3.55
245 246 2.809174 CGTGCATCGCTCGAACCA 60.809 61.111 4.55 0.00 46.28 3.67
246 247 3.554692 CCGTGCATCGCTCGAACC 61.555 66.667 11.56 0.00 46.28 3.62
247 248 2.506217 TCCGTGCATCGCTCGAAC 60.506 61.111 11.56 0.00 46.28 3.95
248 249 2.506217 GTCCGTGCATCGCTCGAA 60.506 61.111 11.56 0.00 46.28 3.71
249 250 4.829518 CGTCCGTGCATCGCTCGA 62.830 66.667 11.56 0.00 46.28 4.04
255 256 2.877360 TAACTCGCCGTCCGTGCATC 62.877 60.000 0.00 0.00 38.35 3.91
256 257 2.495366 TTAACTCGCCGTCCGTGCAT 62.495 55.000 0.00 0.00 38.35 3.96
257 258 3.210223 TTAACTCGCCGTCCGTGCA 62.210 57.895 0.00 0.00 38.35 4.57
258 259 2.431260 TTAACTCGCCGTCCGTGC 60.431 61.111 0.00 0.00 38.35 5.34
259 260 2.442188 GCTTAACTCGCCGTCCGTG 61.442 63.158 0.00 0.00 38.35 4.94
260 261 2.126189 GCTTAACTCGCCGTCCGT 60.126 61.111 0.00 0.00 38.35 4.69
261 262 1.480219 GATGCTTAACTCGCCGTCCG 61.480 60.000 0.00 0.00 38.61 4.79
262 263 1.480219 CGATGCTTAACTCGCCGTCC 61.480 60.000 0.00 0.00 0.00 4.79
263 264 0.524816 TCGATGCTTAACTCGCCGTC 60.525 55.000 0.00 0.00 34.94 4.79
264 265 0.801067 GTCGATGCTTAACTCGCCGT 60.801 55.000 0.00 0.00 34.94 5.68
265 266 0.800683 TGTCGATGCTTAACTCGCCG 60.801 55.000 0.00 0.00 34.94 6.46
266 267 0.645868 GTGTCGATGCTTAACTCGCC 59.354 55.000 0.00 0.00 34.94 5.54
267 268 0.645868 GGTGTCGATGCTTAACTCGC 59.354 55.000 0.00 0.00 34.94 5.03
268 269 0.914551 CGGTGTCGATGCTTAACTCG 59.085 55.000 0.00 0.00 39.00 4.18
269 270 0.645868 GCGGTGTCGATGCTTAACTC 59.354 55.000 0.00 0.00 39.00 3.01
270 271 0.246635 AGCGGTGTCGATGCTTAACT 59.753 50.000 0.00 0.00 34.80 2.24
271 272 1.076332 AAGCGGTGTCGATGCTTAAC 58.924 50.000 13.23 0.00 46.40 2.01
272 273 3.525619 AAGCGGTGTCGATGCTTAA 57.474 47.368 13.23 0.00 46.40 1.85
275 276 2.125512 GGAAGCGGTGTCGATGCT 60.126 61.111 0.00 0.00 41.60 3.79
276 277 1.573829 TTTGGAAGCGGTGTCGATGC 61.574 55.000 0.00 0.00 39.00 3.91
277 278 0.165944 GTTTGGAAGCGGTGTCGATG 59.834 55.000 0.00 0.00 39.00 3.84
278 279 0.034896 AGTTTGGAAGCGGTGTCGAT 59.965 50.000 0.00 0.00 39.00 3.59
279 280 0.675083 TAGTTTGGAAGCGGTGTCGA 59.325 50.000 0.00 0.00 39.00 4.20
280 281 1.659098 GATAGTTTGGAAGCGGTGTCG 59.341 52.381 0.00 0.00 39.81 4.35
281 282 2.007608 GGATAGTTTGGAAGCGGTGTC 58.992 52.381 0.00 0.00 0.00 3.67
282 283 1.349688 TGGATAGTTTGGAAGCGGTGT 59.650 47.619 0.00 0.00 0.00 4.16
283 284 2.107950 TGGATAGTTTGGAAGCGGTG 57.892 50.000 0.00 0.00 0.00 4.94
284 285 2.505819 AGATGGATAGTTTGGAAGCGGT 59.494 45.455 0.00 0.00 0.00 5.68
285 286 3.134458 GAGATGGATAGTTTGGAAGCGG 58.866 50.000 0.00 0.00 0.00 5.52
286 287 3.797039 TGAGATGGATAGTTTGGAAGCG 58.203 45.455 0.00 0.00 0.00 4.68
287 288 4.034510 CGTTGAGATGGATAGTTTGGAAGC 59.965 45.833 0.00 0.00 0.00 3.86
288 289 5.292101 GTCGTTGAGATGGATAGTTTGGAAG 59.708 44.000 0.00 0.00 0.00 3.46
289 290 5.175859 GTCGTTGAGATGGATAGTTTGGAA 58.824 41.667 0.00 0.00 0.00 3.53
290 291 4.221924 TGTCGTTGAGATGGATAGTTTGGA 59.778 41.667 0.00 0.00 0.00 3.53
291 292 4.503910 TGTCGTTGAGATGGATAGTTTGG 58.496 43.478 0.00 0.00 0.00 3.28
292 293 6.508563 CGATTGTCGTTGAGATGGATAGTTTG 60.509 42.308 0.00 0.00 34.72 2.93
293 294 5.520288 CGATTGTCGTTGAGATGGATAGTTT 59.480 40.000 0.00 0.00 34.72 2.66
294 295 5.043903 CGATTGTCGTTGAGATGGATAGTT 58.956 41.667 0.00 0.00 34.72 2.24
295 296 4.499865 CCGATTGTCGTTGAGATGGATAGT 60.500 45.833 0.00 0.00 38.40 2.12
296 297 3.983988 CCGATTGTCGTTGAGATGGATAG 59.016 47.826 0.00 0.00 38.40 2.08
297 298 3.798889 GCCGATTGTCGTTGAGATGGATA 60.799 47.826 0.00 0.00 38.40 2.59
298 299 2.826428 CCGATTGTCGTTGAGATGGAT 58.174 47.619 0.00 0.00 38.40 3.41
299 300 1.739035 GCCGATTGTCGTTGAGATGGA 60.739 52.381 0.00 0.00 38.40 3.41
300 301 0.652592 GCCGATTGTCGTTGAGATGG 59.347 55.000 0.00 0.00 38.40 3.51
301 302 1.358877 TGCCGATTGTCGTTGAGATG 58.641 50.000 0.00 0.00 38.40 2.90
302 303 1.732259 GTTGCCGATTGTCGTTGAGAT 59.268 47.619 0.00 0.00 38.40 2.75
303 304 1.144969 GTTGCCGATTGTCGTTGAGA 58.855 50.000 0.00 0.00 38.40 3.27
304 305 1.126846 GAGTTGCCGATTGTCGTTGAG 59.873 52.381 0.00 0.00 38.40 3.02
305 306 1.144969 GAGTTGCCGATTGTCGTTGA 58.855 50.000 0.00 0.00 38.40 3.18
306 307 0.865111 TGAGTTGCCGATTGTCGTTG 59.135 50.000 0.00 0.00 38.40 4.10
307 308 1.148310 CTGAGTTGCCGATTGTCGTT 58.852 50.000 0.00 0.00 38.40 3.85
308 309 0.033504 ACTGAGTTGCCGATTGTCGT 59.966 50.000 0.00 0.00 38.40 4.34
309 310 1.990799 TACTGAGTTGCCGATTGTCG 58.009 50.000 0.00 0.00 40.07 4.35
310 311 2.609459 CCATACTGAGTTGCCGATTGTC 59.391 50.000 0.00 0.00 0.00 3.18
311 312 2.027192 ACCATACTGAGTTGCCGATTGT 60.027 45.455 0.00 0.00 0.00 2.71
312 313 2.352651 CACCATACTGAGTTGCCGATTG 59.647 50.000 0.00 0.00 0.00 2.67
313 314 2.632377 CACCATACTGAGTTGCCGATT 58.368 47.619 0.00 0.00 0.00 3.34
314 315 1.134401 CCACCATACTGAGTTGCCGAT 60.134 52.381 0.00 0.00 0.00 4.18
315 316 0.249120 CCACCATACTGAGTTGCCGA 59.751 55.000 0.00 0.00 0.00 5.54
316 317 0.249120 TCCACCATACTGAGTTGCCG 59.751 55.000 0.00 0.00 0.00 5.69
317 318 1.407437 CCTCCACCATACTGAGTTGCC 60.407 57.143 0.00 0.00 0.00 4.52
318 319 1.407437 CCCTCCACCATACTGAGTTGC 60.407 57.143 0.00 0.00 0.00 4.17
319 320 1.407437 GCCCTCCACCATACTGAGTTG 60.407 57.143 0.00 0.00 0.00 3.16
320 321 0.912486 GCCCTCCACCATACTGAGTT 59.088 55.000 0.00 0.00 0.00 3.01
321 322 1.330655 CGCCCTCCACCATACTGAGT 61.331 60.000 0.00 0.00 0.00 3.41
322 323 1.043116 TCGCCCTCCACCATACTGAG 61.043 60.000 0.00 0.00 0.00 3.35
323 324 1.001120 TCGCCCTCCACCATACTGA 59.999 57.895 0.00 0.00 0.00 3.41
324 325 1.043116 TCTCGCCCTCCACCATACTG 61.043 60.000 0.00 0.00 0.00 2.74
325 326 0.757188 CTCTCGCCCTCCACCATACT 60.757 60.000 0.00 0.00 0.00 2.12
326 327 1.742768 CTCTCGCCCTCCACCATAC 59.257 63.158 0.00 0.00 0.00 2.39
327 328 2.134287 GCTCTCGCCCTCCACCATA 61.134 63.158 0.00 0.00 0.00 2.74
328 329 3.474570 GCTCTCGCCCTCCACCAT 61.475 66.667 0.00 0.00 0.00 3.55
338 339 4.087892 TGAAGGGCTGGCTCTCGC 62.088 66.667 0.00 0.00 0.00 5.03
339 340 2.125350 GTGAAGGGCTGGCTCTCG 60.125 66.667 0.00 0.00 0.00 4.04
340 341 2.125350 CGTGAAGGGCTGGCTCTC 60.125 66.667 0.00 0.00 0.00 3.20
341 342 4.400961 GCGTGAAGGGCTGGCTCT 62.401 66.667 0.00 0.00 0.00 4.09
342 343 3.984193 ATGCGTGAAGGGCTGGCTC 62.984 63.158 0.00 0.00 0.00 4.70
343 344 4.039092 ATGCGTGAAGGGCTGGCT 62.039 61.111 0.00 0.00 0.00 4.75
344 345 3.818787 CATGCGTGAAGGGCTGGC 61.819 66.667 0.00 0.00 0.00 4.85
345 346 3.818787 GCATGCGTGAAGGGCTGG 61.819 66.667 10.93 0.00 0.00 4.85
346 347 2.412323 ATGCATGCGTGAAGGGCTG 61.412 57.895 12.68 0.00 0.00 4.85
347 348 2.044650 ATGCATGCGTGAAGGGCT 60.045 55.556 12.68 0.00 0.00 5.19
348 349 2.103538 CATGCATGCGTGAAGGGC 59.896 61.111 31.95 0.00 35.09 5.19
349 350 2.103538 GCATGCATGCGTGAAGGG 59.896 61.111 37.79 15.97 44.67 3.95
358 359 3.130516 AGTGGAGAGAAAATGCATGCATG 59.869 43.478 32.79 22.70 36.68 4.06
359 360 3.130516 CAGTGGAGAGAAAATGCATGCAT 59.869 43.478 27.46 27.46 38.46 3.96
360 361 2.490509 CAGTGGAGAGAAAATGCATGCA 59.509 45.455 25.04 25.04 0.00 3.96
361 362 2.490903 ACAGTGGAGAGAAAATGCATGC 59.509 45.455 11.82 11.82 0.00 4.06
362 363 5.885230 TTACAGTGGAGAGAAAATGCATG 57.115 39.130 0.00 0.00 0.00 4.06
363 364 6.571150 GCTTTTACAGTGGAGAGAAAATGCAT 60.571 38.462 0.00 0.00 31.27 3.96
364 365 5.278463 GCTTTTACAGTGGAGAGAAAATGCA 60.278 40.000 0.00 0.00 31.27 3.96
365 366 5.048434 AGCTTTTACAGTGGAGAGAAAATGC 60.048 40.000 0.00 0.00 0.00 3.56
366 367 6.205464 TCAGCTTTTACAGTGGAGAGAAAATG 59.795 38.462 0.00 0.00 0.00 2.32
367 368 6.205658 GTCAGCTTTTACAGTGGAGAGAAAAT 59.794 38.462 0.00 0.00 0.00 1.82
368 369 5.527582 GTCAGCTTTTACAGTGGAGAGAAAA 59.472 40.000 0.00 0.00 0.00 2.29
369 370 5.057149 GTCAGCTTTTACAGTGGAGAGAAA 58.943 41.667 0.00 0.00 0.00 2.52
370 371 4.100963 TGTCAGCTTTTACAGTGGAGAGAA 59.899 41.667 0.00 0.00 0.00 2.87
371 372 3.641436 TGTCAGCTTTTACAGTGGAGAGA 59.359 43.478 0.00 0.00 0.00 3.10
376 377 3.206150 ACAGTGTCAGCTTTTACAGTGG 58.794 45.455 22.85 11.60 46.62 4.00
378 379 4.122776 CAGACAGTGTCAGCTTTTACAGT 58.877 43.478 24.73 0.00 34.60 3.55
389 390 0.459899 ACTTGCGTCAGACAGTGTCA 59.540 50.000 24.73 2.39 34.60 3.58
397 398 4.338400 AGCTATACATGTACTTGCGTCAGA 59.662 41.667 7.96 0.00 0.00 3.27
399 400 4.338400 AGAGCTATACATGTACTTGCGTCA 59.662 41.667 7.96 0.00 0.00 4.35
402 403 7.875316 AAATAGAGCTATACATGTACTTGCG 57.125 36.000 7.96 0.00 0.00 4.85
433 434 8.767085 ACAATTTCTTTTCATGTGCAAATACAG 58.233 29.630 0.00 0.00 33.44 2.74
473 474 6.207417 ACCGTTCATCAGTTTCATCAAGATTT 59.793 34.615 0.00 0.00 0.00 2.17
485 486 1.812571 GCAATCCACCGTTCATCAGTT 59.187 47.619 0.00 0.00 0.00 3.16
490 491 1.673993 TGCGCAATCCACCGTTCAT 60.674 52.632 8.16 0.00 0.00 2.57
491 492 2.281139 TGCGCAATCCACCGTTCA 60.281 55.556 8.16 0.00 0.00 3.18
547 556 3.542097 CGCACTCACACGCATATAGTTTG 60.542 47.826 0.00 0.00 0.00 2.93
553 562 0.173481 ACTCGCACTCACACGCATAT 59.827 50.000 0.00 0.00 0.00 1.78
560 569 1.570813 CTTGTTCACTCGCACTCACA 58.429 50.000 0.00 0.00 0.00 3.58
592 601 1.134694 GAATCGGCGTGCACTTTCC 59.865 57.895 16.19 11.95 0.00 3.13
623 632 4.383861 CTGGTCGCAGCTGCCTGA 62.384 66.667 32.07 21.62 41.77 3.86
662 671 1.662360 GCAACACGCATGCATATACG 58.338 50.000 19.57 12.73 43.29 3.06
663 672 1.660052 CCGCAACACGCATGCATATAC 60.660 52.381 19.57 0.90 44.01 1.47
665 674 1.356270 CCGCAACACGCATGCATAT 59.644 52.632 19.57 0.00 44.01 1.78
666 675 2.790586 CCGCAACACGCATGCATA 59.209 55.556 19.57 0.00 44.01 3.14
691 700 1.291132 GAGATTTTCCTCGCTTCCCG 58.709 55.000 0.00 0.00 38.61 5.14
699 708 4.080863 TCTGCTACTTGGGAGATTTTCCTC 60.081 45.833 0.00 0.00 45.98 3.71
702 711 5.491982 TCTTCTGCTACTTGGGAGATTTTC 58.508 41.667 0.00 0.00 33.89 2.29
766 775 2.537792 CTTCTCGACGGCGGTTGCTA 62.538 60.000 12.58 0.00 42.25 3.49
774 783 2.189342 CATCTTCTTCTTCTCGACGGC 58.811 52.381 0.00 0.00 0.00 5.68
793 802 1.037579 ATGGATGTCGTCTCTCCGCA 61.038 55.000 0.00 0.00 31.36 5.69
879 895 4.473520 AATGGCGAGCAGGACGGG 62.474 66.667 0.00 0.00 0.00 5.28
880 896 3.197790 CAATGGCGAGCAGGACGG 61.198 66.667 0.00 0.00 0.00 4.79
881 897 3.197790 CCAATGGCGAGCAGGACG 61.198 66.667 0.00 0.00 0.00 4.79
882 898 3.512516 GCCAATGGCGAGCAGGAC 61.513 66.667 9.14 0.00 39.62 3.85
918 934 1.605712 CCGCCTCCGCTTCTATTTAGG 60.606 57.143 0.00 0.00 0.00 2.69
919 935 1.784525 CCGCCTCCGCTTCTATTTAG 58.215 55.000 0.00 0.00 0.00 1.85
946 962 1.938577 CGAGCTAAGCAGGTACGTAGA 59.061 52.381 0.00 0.00 30.99 2.59
986 1013 2.062519 GCGCCATTAGCTAGCTACTTC 58.937 52.381 24.09 12.09 40.39 3.01
1008 1039 0.730494 GCGTTTGCTTGCTGTGGATC 60.730 55.000 0.00 0.00 38.39 3.36
1044 1075 4.430423 CTGACAAACGCGAGCGCC 62.430 66.667 15.93 0.00 44.19 6.53
1480 1565 4.686191 ATTCATTTGCCAACTTTGTCCA 57.314 36.364 0.00 0.00 0.00 4.02
1608 1721 0.254178 ACCTGCTGCTCTAACATGGG 59.746 55.000 0.00 0.00 0.00 4.00
2106 2222 1.335132 ATGGTGGGGTAGTAGGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
2131 2247 5.308825 ACTACTGATGTGGTTTTCAAGAGG 58.691 41.667 0.00 0.00 34.08 3.69
2137 2253 4.142600 GCATGGACTACTGATGTGGTTTTC 60.143 45.833 0.00 0.00 38.02 2.29
2146 2262 2.547430 CGATGCTGCATGGACTACTGAT 60.547 50.000 21.53 0.00 0.00 2.90
2147 2263 1.202452 CGATGCTGCATGGACTACTGA 60.202 52.381 21.53 0.00 0.00 3.41
2150 2266 1.202463 ACTCGATGCTGCATGGACTAC 60.202 52.381 21.53 3.16 0.00 2.73
2151 2267 1.114627 ACTCGATGCTGCATGGACTA 58.885 50.000 21.53 2.06 0.00 2.59
2216 2570 9.979578 ACCAAAATCCATATATACGTACGTTTA 57.020 29.630 27.92 22.67 0.00 2.01
2218 2572 8.891671 AACCAAAATCCATATATACGTACGTT 57.108 30.769 27.92 16.17 0.00 3.99
2219 2573 8.891671 AAACCAAAATCCATATATACGTACGT 57.108 30.769 25.98 25.98 0.00 3.57
2237 2591 7.661968 TCGATGTTCATTATCCAAAAACCAAA 58.338 30.769 0.00 0.00 0.00 3.28
2242 2596 7.374272 TGCTTTCGATGTTCATTATCCAAAAA 58.626 30.769 0.00 0.00 0.00 1.94
2243 2597 6.918626 TGCTTTCGATGTTCATTATCCAAAA 58.081 32.000 0.00 0.00 0.00 2.44
2244 2598 6.507958 TGCTTTCGATGTTCATTATCCAAA 57.492 33.333 0.00 0.00 0.00 3.28
2245 2599 6.459985 CCATGCTTTCGATGTTCATTATCCAA 60.460 38.462 0.00 0.00 0.00 3.53
2246 2600 5.008911 CCATGCTTTCGATGTTCATTATCCA 59.991 40.000 0.00 0.00 0.00 3.41
2247 2601 5.239306 TCCATGCTTTCGATGTTCATTATCC 59.761 40.000 0.00 0.00 0.00 2.59
2248 2602 6.304356 TCCATGCTTTCGATGTTCATTATC 57.696 37.500 0.00 0.00 0.00 1.75
2260 2614 1.064505 ACGCATCATTCCATGCTTTCG 59.935 47.619 4.06 0.00 46.09 3.46
2261 2615 2.857592 ACGCATCATTCCATGCTTTC 57.142 45.000 4.06 0.00 46.09 2.62
2282 2636 9.701098 TTCCAAGTTTATACTATTACATAGGCG 57.299 33.333 0.00 0.00 37.18 5.52
2309 2665 7.631377 GCAGAAGGAAAATTGGCATATACAAGT 60.631 37.037 0.00 0.00 0.00 3.16
2552 2910 1.077787 CCTTGCCGTGGCTTATCCA 60.078 57.895 12.84 0.00 44.18 3.41
2746 3105 4.826274 TTCTATTGGTGAGACCTTCAGG 57.174 45.455 0.00 0.00 39.58 3.86
2805 3164 6.260714 AGAATTCAATATATTCACGCAGCACA 59.739 34.615 8.44 0.00 35.04 4.57
3009 3368 1.677217 CCCTGTACAAAGAGCCAGCTC 60.677 57.143 11.78 11.78 43.03 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.