Multiple sequence alignment - TraesCS2D01G067800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G067800 chr2D 100.000 5185 0 0 1 5185 28425381 28420197 0.000000e+00 9575.0
1 TraesCS2D01G067800 chr2D 90.465 2517 218 18 1752 4256 28084228 28081722 0.000000e+00 3299.0
2 TraesCS2D01G067800 chr2D 87.925 2766 285 33 1757 4496 28071660 28068918 0.000000e+00 3212.0
3 TraesCS2D01G067800 chr2D 91.032 1405 118 7 2795 4198 28079400 28078003 0.000000e+00 1890.0
4 TraesCS2D01G067800 chr2D 83.962 742 105 10 979 1713 28072560 28071826 0.000000e+00 699.0
5 TraesCS2D01G067800 chr2D 86.909 550 71 1 980 1529 28084912 28084364 2.650000e-172 616.0
6 TraesCS2D01G067800 chr2D 93.277 119 7 1 1637 1755 28071833 28071716 1.920000e-39 174.0
7 TraesCS2D01G067800 chr2A 89.141 3444 335 22 1754 5183 30276429 30273011 0.000000e+00 4252.0
8 TraesCS2D01G067800 chr2A 87.232 2514 260 30 1758 4256 30307650 30305183 0.000000e+00 2808.0
9 TraesCS2D01G067800 chr2A 94.330 1023 52 3 733 1755 30308864 30307848 0.000000e+00 1563.0
10 TraesCS2D01G067800 chr2A 84.957 1396 197 13 1771 3160 30198141 30196753 0.000000e+00 1402.0
11 TraesCS2D01G067800 chr2A 86.792 583 75 2 980 1561 30199163 30198582 0.000000e+00 649.0
12 TraesCS2D01G067800 chr2A 84.676 633 88 9 934 1561 30277162 30276534 1.590000e-174 623.0
13 TraesCS2D01G067800 chr2A 77.143 350 72 7 1410 1755 30308052 30307707 4.100000e-46 196.0
14 TraesCS2D01G067800 chr2A 81.423 253 22 15 165 399 30309468 30309223 3.190000e-42 183.0
15 TraesCS2D01G067800 chr2A 85.926 135 15 4 5051 5183 30257494 30257362 1.950000e-29 141.0
16 TraesCS2D01G067800 chr2B 88.367 2768 299 10 1961 4722 44903379 44906129 0.000000e+00 3306.0
17 TraesCS2D01G067800 chr2B 88.363 2681 284 21 1757 4425 45695309 45697973 0.000000e+00 3197.0
18 TraesCS2D01G067800 chr2B 88.650 978 88 14 4197 5161 45621548 45622515 0.000000e+00 1170.0
19 TraesCS2D01G067800 chr2B 89.169 674 61 9 4090 4754 44897335 44898005 0.000000e+00 830.0
20 TraesCS2D01G067800 chr2B 90.488 410 39 0 980 1389 45694691 45695100 4.570000e-150 542.0
21 TraesCS2D01G067800 chr2B 80.877 570 107 2 979 1547 44902775 44903343 1.020000e-121 448.0
22 TraesCS2D01G067800 chr2B 87.845 362 37 6 4827 5185 44923116 44923473 8.030000e-113 418.0
23 TraesCS2D01G067800 chr2B 91.388 209 18 0 3813 4021 44897115 44897323 2.360000e-73 287.0
24 TraesCS2D01G067800 chr2B 86.765 204 19 8 1556 1755 45695054 45695253 2.430000e-53 220.0
25 TraesCS2D01G067800 chr2B 85.276 163 20 2 14 176 190022885 190023043 1.160000e-36 165.0
26 TraesCS2D01G067800 chr2B 85.000 160 19 5 19 177 731254929 731255084 1.930000e-34 158.0
27 TraesCS2D01G067800 chr2B 83.333 168 24 2 19 186 243784812 243784649 8.990000e-33 152.0
28 TraesCS2D01G067800 chrUn 86.164 159 15 3 19 176 480163318 480163470 1.160000e-36 165.0
29 TraesCS2D01G067800 chr1D 86.164 159 15 3 19 176 386431956 386432108 1.160000e-36 165.0
30 TraesCS2D01G067800 chr1B 86.164 159 15 3 19 176 518807887 518808039 1.160000e-36 165.0
31 TraesCS2D01G067800 chr1A 86.164 159 15 3 19 176 486340621 486340773 1.160000e-36 165.0
32 TraesCS2D01G067800 chr3D 85.276 163 18 4 20 181 441388820 441388663 4.150000e-36 163.0
33 TraesCS2D01G067800 chr6D 84.810 158 21 1 19 176 392273228 392273074 6.950000e-34 156.0
34 TraesCS2D01G067800 chr3A 79.661 118 17 4 176 293 655645274 655645164 1.550000e-10 78.7
35 TraesCS2D01G067800 chr3A 79.661 118 16 7 176 293 655646490 655646381 1.550000e-10 78.7
36 TraesCS2D01G067800 chr5B 94.595 37 1 1 264 300 571554088 571554053 7.250000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G067800 chr2D 28420197 28425381 5184 True 9575.000000 9575 100.000000 1 5185 1 chr2D.!!$R1 5184
1 TraesCS2D01G067800 chr2D 28078003 28084912 6909 True 1935.000000 3299 89.468667 980 4256 3 chr2D.!!$R3 3276
2 TraesCS2D01G067800 chr2D 28068918 28072560 3642 True 1361.666667 3212 88.388000 979 4496 3 chr2D.!!$R2 3517
3 TraesCS2D01G067800 chr2A 30273011 30277162 4151 True 2437.500000 4252 86.908500 934 5183 2 chr2A.!!$R3 4249
4 TraesCS2D01G067800 chr2A 30305183 30309468 4285 True 1187.500000 2808 85.032000 165 4256 4 chr2A.!!$R4 4091
5 TraesCS2D01G067800 chr2A 30196753 30199163 2410 True 1025.500000 1402 85.874500 980 3160 2 chr2A.!!$R2 2180
6 TraesCS2D01G067800 chr2B 44902775 44906129 3354 False 1877.000000 3306 84.622000 979 4722 2 chr2B.!!$F6 3743
7 TraesCS2D01G067800 chr2B 45694691 45697973 3282 False 1319.666667 3197 88.538667 980 4425 3 chr2B.!!$F7 3445
8 TraesCS2D01G067800 chr2B 45621548 45622515 967 False 1170.000000 1170 88.650000 4197 5161 1 chr2B.!!$F2 964
9 TraesCS2D01G067800 chr2B 44897115 44898005 890 False 558.500000 830 90.278500 3813 4754 2 chr2B.!!$F5 941

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
893 1137 0.034896 ACAGGTTGTTCTACCGCTGG 59.965 55.0 0.00 0.0 43.21 4.85 F
1033 1283 0.836400 AACTCTCCGCCCTCTTTCCA 60.836 55.0 0.00 0.0 0.00 3.53 F
2651 3627 0.595825 GGTGCACTGCTTCAACTTGC 60.596 55.0 17.98 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 2774 0.322546 GAAAGATGCCCCGACAGGTT 60.323 55.000 0.00 0.00 35.12 3.50 R
2904 3880 0.039618 AGATGCCACCGGTTGGAATT 59.960 50.000 22.51 9.07 45.09 2.17 R
4639 6567 3.128349 GCGGACAAGTAAGTTCAGTTGA 58.872 45.455 0.00 0.00 33.79 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 7.472334 AAAAGTATACTACTCCCTTCGTTCA 57.528 36.000 5.65 0.00 38.26 3.18
35 36 7.657023 AAAGTATACTACTCCCTTCGTTCAT 57.343 36.000 5.65 0.00 38.26 2.57
36 37 8.757982 AAAGTATACTACTCCCTTCGTTCATA 57.242 34.615 5.65 0.00 38.26 2.15
37 38 8.757982 AAGTATACTACTCCCTTCGTTCATAA 57.242 34.615 5.65 0.00 38.26 1.90
38 39 8.757982 AGTATACTACTCCCTTCGTTCATAAA 57.242 34.615 2.75 0.00 32.47 1.40
39 40 9.364653 AGTATACTACTCCCTTCGTTCATAAAT 57.635 33.333 2.75 0.00 32.47 1.40
47 48 9.712305 ACTCCCTTCGTTCATAAATATAAGATG 57.288 33.333 0.00 0.00 0.00 2.90
48 49 9.712305 CTCCCTTCGTTCATAAATATAAGATGT 57.288 33.333 0.00 0.00 0.00 3.06
92 93 7.430992 GCTACATATGAGCTGAAATGAATGA 57.569 36.000 10.38 0.00 36.96 2.57
93 94 7.868775 GCTACATATGAGCTGAAATGAATGAA 58.131 34.615 10.38 0.00 36.96 2.57
94 95 7.802251 GCTACATATGAGCTGAAATGAATGAAC 59.198 37.037 10.38 0.00 36.96 3.18
95 96 7.634671 ACATATGAGCTGAAATGAATGAACA 57.365 32.000 10.38 0.00 0.00 3.18
96 97 8.058667 ACATATGAGCTGAAATGAATGAACAA 57.941 30.769 10.38 0.00 0.00 2.83
97 98 8.525316 ACATATGAGCTGAAATGAATGAACAAA 58.475 29.630 10.38 0.00 0.00 2.83
98 99 8.804743 CATATGAGCTGAAATGAATGAACAAAC 58.195 33.333 0.00 0.00 0.00 2.93
99 100 6.146601 TGAGCTGAAATGAATGAACAAACA 57.853 33.333 0.00 0.00 0.00 2.83
100 101 5.978919 TGAGCTGAAATGAATGAACAAACAC 59.021 36.000 0.00 0.00 0.00 3.32
101 102 5.904941 AGCTGAAATGAATGAACAAACACA 58.095 33.333 0.00 0.00 0.00 3.72
102 103 5.750067 AGCTGAAATGAATGAACAAACACAC 59.250 36.000 0.00 0.00 0.00 3.82
103 104 5.750067 GCTGAAATGAATGAACAAACACACT 59.250 36.000 0.00 0.00 0.00 3.55
104 105 6.917477 GCTGAAATGAATGAACAAACACACTA 59.083 34.615 0.00 0.00 0.00 2.74
105 106 7.434897 GCTGAAATGAATGAACAAACACACTAA 59.565 33.333 0.00 0.00 0.00 2.24
106 107 9.299963 CTGAAATGAATGAACAAACACACTAAA 57.700 29.630 0.00 0.00 0.00 1.85
107 108 9.645059 TGAAATGAATGAACAAACACACTAAAA 57.355 25.926 0.00 0.00 0.00 1.52
108 109 9.900264 GAAATGAATGAACAAACACACTAAAAC 57.100 29.630 0.00 0.00 0.00 2.43
109 110 8.994429 AATGAATGAACAAACACACTAAAACA 57.006 26.923 0.00 0.00 0.00 2.83
110 111 9.598517 AATGAATGAACAAACACACTAAAACAT 57.401 25.926 0.00 0.00 0.00 2.71
111 112 8.404889 TGAATGAACAAACACACTAAAACATG 57.595 30.769 0.00 0.00 0.00 3.21
112 113 8.031864 TGAATGAACAAACACACTAAAACATGT 58.968 29.630 0.00 0.00 0.00 3.21
113 114 7.985634 ATGAACAAACACACTAAAACATGTC 57.014 32.000 0.00 0.00 0.00 3.06
114 115 7.151999 TGAACAAACACACTAAAACATGTCT 57.848 32.000 0.00 0.00 0.00 3.41
115 116 8.270080 TGAACAAACACACTAAAACATGTCTA 57.730 30.769 0.00 0.00 0.00 2.59
116 117 8.898761 TGAACAAACACACTAAAACATGTCTAT 58.101 29.630 0.00 0.00 0.00 1.98
132 133 9.679661 AACATGTCTATATACAACCAATTCACA 57.320 29.630 0.00 0.00 32.02 3.58
133 134 9.679661 ACATGTCTATATACAACCAATTCACAA 57.320 29.630 0.00 0.00 32.02 3.33
178 179 5.931294 TGTTTGTGAACATAGGGAGTACAA 58.069 37.500 0.00 0.00 40.71 2.41
205 206 5.692115 TTTGGATCAGGTTAGCTGATACA 57.308 39.130 28.99 28.99 46.84 2.29
210 211 5.525378 GGATCAGGTTAGCTGATACAAACAG 59.475 44.000 26.27 0.00 40.82 3.16
220 221 5.050490 GCTGATACAAACAGGACGATACAT 58.950 41.667 0.00 0.00 36.09 2.29
249 254 5.357742 ACATCAACATACACTATGGAGCA 57.642 39.130 0.00 0.00 40.47 4.26
264 275 4.853924 TGGAGCAAGAGAAAACAAATCC 57.146 40.909 0.00 0.00 0.00 3.01
286 297 7.397892 TCCAATGTAACACTTTGAAACAAGA 57.602 32.000 6.52 0.00 35.88 3.02
292 303 9.651913 ATGTAACACTTTGAAACAAGACAAAAT 57.348 25.926 0.00 0.00 35.95 1.82
293 304 9.482627 TGTAACACTTTGAAACAAGACAAAATT 57.517 25.926 0.00 0.00 35.95 1.82
348 359 0.673437 CAAAGCAACCACGGTGGATT 59.327 50.000 32.72 19.31 40.96 3.01
381 398 5.048852 GCAGAATTGCTTTTTCTCTCTCACT 60.049 40.000 0.00 0.00 46.95 3.41
383 400 5.704978 AGAATTGCTTTTTCTCTCTCACTCC 59.295 40.000 0.00 0.00 0.00 3.85
387 404 3.430556 GCTTTTTCTCTCTCACTCCGTTC 59.569 47.826 0.00 0.00 0.00 3.95
392 409 0.251386 TCTCTCACTCCGTTCCAGCT 60.251 55.000 0.00 0.00 0.00 4.24
399 416 1.291877 CTCCGTTCCAGCTTCCAACG 61.292 60.000 12.57 12.57 42.02 4.10
400 417 2.556287 CGTTCCAGCTTCCAACGC 59.444 61.111 8.26 0.00 36.78 4.84
401 418 2.250939 CGTTCCAGCTTCCAACGCA 61.251 57.895 8.26 0.00 36.78 5.24
402 419 1.576421 GTTCCAGCTTCCAACGCAG 59.424 57.895 0.00 0.00 0.00 5.18
403 420 2.260869 TTCCAGCTTCCAACGCAGC 61.261 57.895 0.00 0.00 36.16 5.25
404 421 2.956799 TTCCAGCTTCCAACGCAGCA 62.957 55.000 0.00 0.00 38.61 4.41
405 422 2.559840 CAGCTTCCAACGCAGCAG 59.440 61.111 0.00 0.00 38.61 4.24
406 423 1.962822 CAGCTTCCAACGCAGCAGA 60.963 57.895 0.00 0.00 38.61 4.26
407 424 1.227943 AGCTTCCAACGCAGCAGAA 60.228 52.632 0.00 0.00 38.61 3.02
408 425 1.208614 GCTTCCAACGCAGCAGAAG 59.791 57.895 0.00 0.25 38.98 2.85
409 426 1.510480 GCTTCCAACGCAGCAGAAGT 61.510 55.000 11.19 0.00 38.37 3.01
414 431 0.234106 CAACGCAGCAGAAGTCTGTG 59.766 55.000 9.94 7.99 45.45 3.66
415 432 0.104855 AACGCAGCAGAAGTCTGTGA 59.895 50.000 9.94 0.00 45.45 3.58
416 433 0.104855 ACGCAGCAGAAGTCTGTGAA 59.895 50.000 9.94 0.00 45.45 3.18
417 434 0.788995 CGCAGCAGAAGTCTGTGAAG 59.211 55.000 9.94 0.00 45.45 3.02
418 435 1.155042 GCAGCAGAAGTCTGTGAAGG 58.845 55.000 9.94 0.00 45.45 3.46
419 436 1.805869 CAGCAGAAGTCTGTGAAGGG 58.194 55.000 9.94 0.00 45.45 3.95
420 437 1.345741 CAGCAGAAGTCTGTGAAGGGA 59.654 52.381 9.94 0.00 45.45 4.20
421 438 2.050144 AGCAGAAGTCTGTGAAGGGAA 58.950 47.619 9.94 0.00 45.45 3.97
422 439 2.147150 GCAGAAGTCTGTGAAGGGAAC 58.853 52.381 9.94 0.00 45.45 3.62
423 440 2.408050 CAGAAGTCTGTGAAGGGAACG 58.592 52.381 0.00 0.00 39.09 3.95
424 441 1.149148 GAAGTCTGTGAAGGGAACGC 58.851 55.000 0.00 0.00 0.00 4.84
425 442 0.250338 AAGTCTGTGAAGGGAACGCC 60.250 55.000 0.00 0.00 0.00 5.68
426 443 2.027625 GTCTGTGAAGGGAACGCCG 61.028 63.158 0.00 0.00 33.83 6.46
427 444 3.423154 CTGTGAAGGGAACGCCGC 61.423 66.667 0.00 0.00 33.83 6.53
428 445 4.243008 TGTGAAGGGAACGCCGCA 62.243 61.111 0.00 0.00 33.83 5.69
429 446 3.423154 GTGAAGGGAACGCCGCAG 61.423 66.667 0.00 0.00 33.83 5.18
430 447 3.621805 TGAAGGGAACGCCGCAGA 61.622 61.111 0.00 0.00 33.83 4.26
431 448 3.119096 GAAGGGAACGCCGCAGAC 61.119 66.667 0.00 0.00 33.83 3.51
432 449 3.591254 GAAGGGAACGCCGCAGACT 62.591 63.158 0.00 0.00 33.83 3.24
433 450 3.883744 AAGGGAACGCCGCAGACTG 62.884 63.158 0.00 0.00 33.83 3.51
443 460 3.555428 GCAGACTGCGTTCACCTC 58.445 61.111 12.53 0.00 31.71 3.85
444 461 2.375766 GCAGACTGCGTTCACCTCG 61.376 63.158 12.53 0.00 31.71 4.63
450 467 3.395669 GCGTTCACCTCGCCATAC 58.604 61.111 0.00 0.00 46.61 2.39
451 468 2.171725 GCGTTCACCTCGCCATACC 61.172 63.158 0.00 0.00 46.61 2.73
452 469 1.515954 CGTTCACCTCGCCATACCT 59.484 57.895 0.00 0.00 0.00 3.08
453 470 0.527817 CGTTCACCTCGCCATACCTC 60.528 60.000 0.00 0.00 0.00 3.85
454 471 0.824759 GTTCACCTCGCCATACCTCT 59.175 55.000 0.00 0.00 0.00 3.69
455 472 0.824109 TTCACCTCGCCATACCTCTG 59.176 55.000 0.00 0.00 0.00 3.35
456 473 0.324368 TCACCTCGCCATACCTCTGT 60.324 55.000 0.00 0.00 0.00 3.41
457 474 0.537188 CACCTCGCCATACCTCTGTT 59.463 55.000 0.00 0.00 0.00 3.16
458 475 1.066143 CACCTCGCCATACCTCTGTTT 60.066 52.381 0.00 0.00 0.00 2.83
459 476 1.207329 ACCTCGCCATACCTCTGTTTC 59.793 52.381 0.00 0.00 0.00 2.78
460 477 1.482593 CCTCGCCATACCTCTGTTTCT 59.517 52.381 0.00 0.00 0.00 2.52
461 478 2.482142 CCTCGCCATACCTCTGTTTCTC 60.482 54.545 0.00 0.00 0.00 2.87
462 479 2.428890 CTCGCCATACCTCTGTTTCTCT 59.571 50.000 0.00 0.00 0.00 3.10
463 480 2.832129 TCGCCATACCTCTGTTTCTCTT 59.168 45.455 0.00 0.00 0.00 2.85
464 481 2.932614 CGCCATACCTCTGTTTCTCTTG 59.067 50.000 0.00 0.00 0.00 3.02
465 482 3.617531 CGCCATACCTCTGTTTCTCTTGT 60.618 47.826 0.00 0.00 0.00 3.16
466 483 4.327680 GCCATACCTCTGTTTCTCTTGTT 58.672 43.478 0.00 0.00 0.00 2.83
467 484 4.154918 GCCATACCTCTGTTTCTCTTGTTG 59.845 45.833 0.00 0.00 0.00 3.33
468 485 4.697352 CCATACCTCTGTTTCTCTTGTTGG 59.303 45.833 0.00 0.00 0.00 3.77
469 486 2.576615 ACCTCTGTTTCTCTTGTTGGC 58.423 47.619 0.00 0.00 0.00 4.52
470 487 1.882623 CCTCTGTTTCTCTTGTTGGCC 59.117 52.381 0.00 0.00 0.00 5.36
471 488 1.532868 CTCTGTTTCTCTTGTTGGCCG 59.467 52.381 0.00 0.00 0.00 6.13
472 489 1.140052 TCTGTTTCTCTTGTTGGCCGA 59.860 47.619 0.00 0.00 0.00 5.54
473 490 1.532868 CTGTTTCTCTTGTTGGCCGAG 59.467 52.381 0.00 0.00 0.00 4.63
474 491 0.875059 GTTTCTCTTGTTGGCCGAGG 59.125 55.000 0.00 0.00 0.00 4.63
475 492 0.889186 TTTCTCTTGTTGGCCGAGGC 60.889 55.000 5.37 5.37 41.06 4.70
529 546 4.015382 CCGCCGAAACGCCGAAAA 62.015 61.111 0.00 0.00 0.00 2.29
530 547 2.174835 CGCCGAAACGCCGAAAAT 59.825 55.556 0.00 0.00 0.00 1.82
531 548 1.861715 CGCCGAAACGCCGAAAATC 60.862 57.895 0.00 0.00 0.00 2.17
532 549 1.861715 GCCGAAACGCCGAAAATCG 60.862 57.895 0.00 0.00 40.07 3.34
533 550 1.782807 CCGAAACGCCGAAAATCGA 59.217 52.632 0.58 0.00 43.74 3.59
534 551 0.247145 CCGAAACGCCGAAAATCGAG 60.247 55.000 0.58 0.00 43.74 4.04
535 552 0.247145 CGAAACGCCGAAAATCGAGG 60.247 55.000 0.58 0.00 43.74 4.63
536 553 0.794473 GAAACGCCGAAAATCGAGGT 59.206 50.000 0.58 0.00 43.74 3.85
537 554 0.794473 AAACGCCGAAAATCGAGGTC 59.206 50.000 0.58 0.00 43.74 3.85
538 555 1.349259 AACGCCGAAAATCGAGGTCG 61.349 55.000 0.58 7.90 43.74 4.79
539 556 2.701606 GCCGAAAATCGAGGTCGC 59.298 61.111 9.07 3.00 43.74 5.19
540 557 2.810012 GCCGAAAATCGAGGTCGCC 61.810 63.158 9.07 0.00 43.74 5.54
541 558 2.514013 CCGAAAATCGAGGTCGCCG 61.514 63.158 9.07 0.00 43.74 6.46
542 559 2.701606 GAAAATCGAGGTCGCCGC 59.298 61.111 0.00 0.00 39.60 6.53
543 560 2.810012 GAAAATCGAGGTCGCCGCC 61.810 63.158 0.00 0.00 39.60 6.13
549 566 4.424566 GAGGTCGCCGCCGTGTAA 62.425 66.667 0.00 0.00 35.54 2.41
550 567 4.430765 AGGTCGCCGCCGTGTAAG 62.431 66.667 0.00 0.00 35.54 2.34
553 570 4.444838 TCGCCGCCGTGTAAGCAT 62.445 61.111 0.00 0.00 35.54 3.79
554 571 4.222589 CGCCGCCGTGTAAGCATG 62.223 66.667 0.00 0.00 0.00 4.06
555 572 3.124921 GCCGCCGTGTAAGCATGT 61.125 61.111 0.00 0.00 0.00 3.21
556 573 2.784596 CCGCCGTGTAAGCATGTG 59.215 61.111 0.00 0.00 0.00 3.21
557 574 2.032634 CCGCCGTGTAAGCATGTGT 61.033 57.895 0.00 0.00 0.00 3.72
558 575 1.132436 CGCCGTGTAAGCATGTGTG 59.868 57.895 0.00 0.00 0.00 3.82
567 584 3.070576 GCATGTGTGCCCCCTTCC 61.071 66.667 0.00 0.00 45.76 3.46
568 585 2.765969 CATGTGTGCCCCCTTCCT 59.234 61.111 0.00 0.00 0.00 3.36
569 586 1.379044 CATGTGTGCCCCCTTCCTC 60.379 63.158 0.00 0.00 0.00 3.71
570 587 1.542375 ATGTGTGCCCCCTTCCTCT 60.542 57.895 0.00 0.00 0.00 3.69
571 588 1.142688 ATGTGTGCCCCCTTCCTCTT 61.143 55.000 0.00 0.00 0.00 2.85
572 589 1.002011 GTGTGCCCCCTTCCTCTTC 60.002 63.158 0.00 0.00 0.00 2.87
573 590 1.151810 TGTGCCCCCTTCCTCTTCT 60.152 57.895 0.00 0.00 0.00 2.85
574 591 1.201429 TGTGCCCCCTTCCTCTTCTC 61.201 60.000 0.00 0.00 0.00 2.87
575 592 1.616628 TGCCCCCTTCCTCTTCTCC 60.617 63.158 0.00 0.00 0.00 3.71
576 593 1.307430 GCCCCCTTCCTCTTCTCCT 60.307 63.158 0.00 0.00 0.00 3.69
577 594 1.631071 GCCCCCTTCCTCTTCTCCTG 61.631 65.000 0.00 0.00 0.00 3.86
578 595 0.252927 CCCCCTTCCTCTTCTCCTGT 60.253 60.000 0.00 0.00 0.00 4.00
579 596 1.199615 CCCCTTCCTCTTCTCCTGTC 58.800 60.000 0.00 0.00 0.00 3.51
580 597 0.820871 CCCTTCCTCTTCTCCTGTCG 59.179 60.000 0.00 0.00 0.00 4.35
581 598 0.820871 CCTTCCTCTTCTCCTGTCGG 59.179 60.000 0.00 0.00 0.00 4.79
582 599 1.551452 CTTCCTCTTCTCCTGTCGGT 58.449 55.000 0.00 0.00 0.00 4.69
583 600 1.474879 CTTCCTCTTCTCCTGTCGGTC 59.525 57.143 0.00 0.00 0.00 4.79
584 601 0.323542 TCCTCTTCTCCTGTCGGTCC 60.324 60.000 0.00 0.00 0.00 4.46
585 602 0.612174 CCTCTTCTCCTGTCGGTCCA 60.612 60.000 0.00 0.00 0.00 4.02
586 603 1.257743 CTCTTCTCCTGTCGGTCCAA 58.742 55.000 0.00 0.00 0.00 3.53
587 604 0.966920 TCTTCTCCTGTCGGTCCAAC 59.033 55.000 0.00 0.00 0.00 3.77
588 605 0.037232 CTTCTCCTGTCGGTCCAACC 60.037 60.000 0.00 0.00 34.05 3.77
589 606 0.761323 TTCTCCTGTCGGTCCAACCA 60.761 55.000 0.00 0.00 38.47 3.67
590 607 1.004918 CTCCTGTCGGTCCAACCAC 60.005 63.158 0.00 0.00 38.47 4.16
591 608 1.754380 CTCCTGTCGGTCCAACCACA 61.754 60.000 0.00 0.15 38.47 4.17
592 609 1.597027 CCTGTCGGTCCAACCACAC 60.597 63.158 0.00 0.00 38.47 3.82
593 610 1.145156 CTGTCGGTCCAACCACACA 59.855 57.895 0.00 0.00 38.47 3.72
594 611 0.880278 CTGTCGGTCCAACCACACAG 60.880 60.000 9.60 9.60 40.41 3.66
595 612 1.331399 TGTCGGTCCAACCACACAGA 61.331 55.000 0.00 0.00 38.47 3.41
596 613 0.600255 GTCGGTCCAACCACACAGAG 60.600 60.000 0.00 0.00 38.47 3.35
597 614 1.046472 TCGGTCCAACCACACAGAGT 61.046 55.000 0.00 0.00 38.47 3.24
598 615 0.600255 CGGTCCAACCACACAGAGTC 60.600 60.000 0.00 0.00 38.47 3.36
599 616 0.250338 GGTCCAACCACACAGAGTCC 60.250 60.000 0.00 0.00 38.42 3.85
600 617 0.468226 GTCCAACCACACAGAGTCCA 59.532 55.000 0.00 0.00 0.00 4.02
601 618 0.758734 TCCAACCACACAGAGTCCAG 59.241 55.000 0.00 0.00 0.00 3.86
602 619 0.469917 CCAACCACACAGAGTCCAGT 59.530 55.000 0.00 0.00 0.00 4.00
603 620 1.541233 CCAACCACACAGAGTCCAGTC 60.541 57.143 0.00 0.00 0.00 3.51
604 621 1.414181 CAACCACACAGAGTCCAGTCT 59.586 52.381 0.00 0.00 0.00 3.24
605 622 1.333177 ACCACACAGAGTCCAGTCTC 58.667 55.000 0.00 0.00 34.96 3.36
606 623 0.605589 CCACACAGAGTCCAGTCTCC 59.394 60.000 0.00 0.00 35.28 3.71
607 624 1.332195 CACACAGAGTCCAGTCTCCA 58.668 55.000 0.00 0.00 35.28 3.86
608 625 1.271934 CACACAGAGTCCAGTCTCCAG 59.728 57.143 0.00 0.00 35.28 3.86
609 626 1.133325 ACACAGAGTCCAGTCTCCAGT 60.133 52.381 0.00 0.00 35.28 4.00
610 627 1.543802 CACAGAGTCCAGTCTCCAGTC 59.456 57.143 0.00 0.00 35.28 3.51
611 628 1.181786 CAGAGTCCAGTCTCCAGTCC 58.818 60.000 0.00 0.00 35.28 3.85
612 629 0.780637 AGAGTCCAGTCTCCAGTCCA 59.219 55.000 0.00 0.00 35.28 4.02
613 630 0.892063 GAGTCCAGTCTCCAGTCCAC 59.108 60.000 0.00 0.00 0.00 4.02
614 631 0.543174 AGTCCAGTCTCCAGTCCACC 60.543 60.000 0.00 0.00 0.00 4.61
615 632 0.832135 GTCCAGTCTCCAGTCCACCA 60.832 60.000 0.00 0.00 0.00 4.17
616 633 0.832135 TCCAGTCTCCAGTCCACCAC 60.832 60.000 0.00 0.00 0.00 4.16
617 634 1.121407 CCAGTCTCCAGTCCACCACA 61.121 60.000 0.00 0.00 0.00 4.17
620 637 0.250513 GTCTCCAGTCCACCACATCC 59.749 60.000 0.00 0.00 0.00 3.51
646 663 2.133281 AGCAGAGCATGTTGCCATAA 57.867 45.000 13.08 0.00 46.52 1.90
671 724 1.648116 AATGCTTGTTGGAATGCCCT 58.352 45.000 0.00 0.00 35.38 5.19
692 745 4.491676 CTGCCCATCTTCTTGACAAAATG 58.508 43.478 0.00 0.00 0.00 2.32
697 750 6.385033 CCCATCTTCTTGACAAAATGAAGAC 58.615 40.000 16.36 0.00 44.78 3.01
703 756 2.500229 TGACAAAATGAAGACCCGACC 58.500 47.619 0.00 0.00 0.00 4.79
704 757 2.105821 TGACAAAATGAAGACCCGACCT 59.894 45.455 0.00 0.00 0.00 3.85
712 766 2.233922 TGAAGACCCGACCTTCATTCTC 59.766 50.000 9.10 0.00 43.39 2.87
725 779 5.835280 ACCTTCATTCTCAACAATTTCCACT 59.165 36.000 0.00 0.00 0.00 4.00
730 784 7.223584 TCATTCTCAACAATTTCCACTGACTA 58.776 34.615 0.00 0.00 0.00 2.59
731 785 7.719193 TCATTCTCAACAATTTCCACTGACTAA 59.281 33.333 0.00 0.00 0.00 2.24
732 786 6.861065 TCTCAACAATTTCCACTGACTAAC 57.139 37.500 0.00 0.00 0.00 2.34
733 787 6.591935 TCTCAACAATTTCCACTGACTAACT 58.408 36.000 0.00 0.00 0.00 2.24
734 788 6.706270 TCTCAACAATTTCCACTGACTAACTC 59.294 38.462 0.00 0.00 0.00 3.01
735 789 6.591935 TCAACAATTTCCACTGACTAACTCT 58.408 36.000 0.00 0.00 0.00 3.24
736 790 6.706270 TCAACAATTTCCACTGACTAACTCTC 59.294 38.462 0.00 0.00 0.00 3.20
738 792 6.459923 ACAATTTCCACTGACTAACTCTCTC 58.540 40.000 0.00 0.00 0.00 3.20
739 793 4.768130 TTTCCACTGACTAACTCTCTCG 57.232 45.455 0.00 0.00 0.00 4.04
740 794 2.712709 TCCACTGACTAACTCTCTCGG 58.287 52.381 0.00 0.00 0.00 4.63
741 795 2.040012 TCCACTGACTAACTCTCTCGGT 59.960 50.000 0.00 0.00 0.00 4.69
742 796 2.420722 CCACTGACTAACTCTCTCGGTC 59.579 54.545 0.00 0.00 0.00 4.79
743 797 3.340034 CACTGACTAACTCTCTCGGTCT 58.660 50.000 0.00 0.00 0.00 3.85
744 798 3.372822 CACTGACTAACTCTCTCGGTCTC 59.627 52.174 0.00 0.00 0.00 3.36
745 799 2.940410 CTGACTAACTCTCTCGGTCTCC 59.060 54.545 0.00 0.00 0.00 3.71
763 1007 2.743718 CGGTCCCAAGCTGTCAGT 59.256 61.111 0.93 0.00 0.00 3.41
787 1031 3.000041 CACACCTAGCAAAGTATCGCAA 59.000 45.455 0.00 0.00 0.00 4.85
809 1053 4.074970 AGTGTTGGATCAACTTCATGGAC 58.925 43.478 11.36 1.07 43.85 4.02
855 1099 2.409064 TCTGGGTCTTGGTCACCTTA 57.591 50.000 0.00 0.00 33.96 2.69
877 1121 1.473965 CCTGTCGATTCCCATCCACAG 60.474 57.143 3.69 3.69 44.26 3.66
887 1131 2.304761 TCCCATCCACAGGTTGTTCTAC 59.695 50.000 0.00 0.00 0.00 2.59
893 1137 0.034896 ACAGGTTGTTCTACCGCTGG 59.965 55.000 0.00 0.00 43.21 4.85
895 1139 1.376812 GGTTGTTCTACCGCTGGGG 60.377 63.158 9.49 9.49 43.62 4.96
905 1149 2.669569 CGCTGGGGTGTTGGTCTG 60.670 66.667 0.00 0.00 0.00 3.51
951 1195 3.245803 ACACCAAGTCTACTCTGAGGGAT 60.246 47.826 9.85 0.00 0.00 3.85
952 1196 3.131933 CACCAAGTCTACTCTGAGGGATG 59.868 52.174 9.85 3.72 0.00 3.51
957 1201 4.809193 AGTCTACTCTGAGGGATGCATAA 58.191 43.478 9.85 0.00 0.00 1.90
958 1202 5.401750 AGTCTACTCTGAGGGATGCATAAT 58.598 41.667 9.85 0.00 0.00 1.28
974 1218 3.748048 GCATAATAGAGAAGGAATGCGCA 59.252 43.478 14.96 14.96 31.47 6.09
975 1219 4.377841 GCATAATAGAGAAGGAATGCGCAC 60.378 45.833 14.90 0.00 31.47 5.34
976 1220 2.988010 ATAGAGAAGGAATGCGCACA 57.012 45.000 14.90 0.00 0.00 4.57
977 1221 2.760634 TAGAGAAGGAATGCGCACAA 57.239 45.000 14.90 0.00 0.00 3.33
986 1230 2.677836 GGAATGCGCACAAGACAAGATA 59.322 45.455 14.90 0.00 0.00 1.98
988 1232 1.067693 TGCGCACAAGACAAGATACG 58.932 50.000 5.66 0.00 0.00 3.06
1033 1283 0.836400 AACTCTCCGCCCTCTTTCCA 60.836 55.000 0.00 0.00 0.00 3.53
1080 1330 3.539604 CCACCTTCTCATCTTCATGTCC 58.460 50.000 0.00 0.00 0.00 4.02
1329 1582 4.708421 TGGATAGCTAACCTTACGTCACTT 59.292 41.667 19.69 0.00 0.00 3.16
1427 1680 7.667219 ACAGTTTATGATCCTTTCAGTGAACAT 59.333 33.333 4.68 7.99 37.89 2.71
1515 1768 7.093640 ACAGAAAACCATCTTGTCGGTACTATA 60.094 37.037 0.00 0.00 33.17 1.31
1567 1820 7.338196 TCCAAACTTTGATACTGTCAGAAAACA 59.662 33.333 6.91 0.00 38.29 2.83
1569 1822 8.961092 CAAACTTTGATACTGTCAGAAAACATG 58.039 33.333 6.91 0.00 38.29 3.21
1573 1826 7.977789 TTGATACTGTCAGAAAACATGCTTA 57.022 32.000 6.91 0.00 38.29 3.09
1580 1833 7.766278 ACTGTCAGAAAACATGCTTATAGGTAG 59.234 37.037 6.91 0.00 0.00 3.18
1642 1895 8.954950 AATTGTCGATCTCTCATTTAACATCT 57.045 30.769 0.00 0.00 0.00 2.90
1755 2218 5.694995 TCACTGGGAAATGTTTCTTCTCTT 58.305 37.500 5.56 0.00 37.35 2.85
1760 2418 5.010282 GGGAAATGTTTCTTCTCTTAGCCA 58.990 41.667 5.56 0.00 37.35 4.75
1798 2774 6.765403 AGTATGCTGAGTTTAGGTAACAACA 58.235 36.000 0.00 0.00 39.30 3.33
1815 2791 1.002134 CAACCTGTCGGGGCATCTT 60.002 57.895 1.89 0.00 40.03 2.40
1819 2795 1.079127 CTGTCGGGGCATCTTTCGT 60.079 57.895 0.00 0.00 0.00 3.85
1822 2798 2.890474 CGGGGCATCTTTCGTCCG 60.890 66.667 0.00 0.00 0.00 4.79
1857 2833 8.659925 ACATCTCATCACTCATTTATCTTGAC 57.340 34.615 0.00 0.00 0.00 3.18
1870 2846 7.500227 TCATTTATCTTGACTTAGCCCAGAATG 59.500 37.037 0.00 0.00 0.00 2.67
1895 2871 5.309806 ACCTAACTGGACAAGTACCATCTTT 59.690 40.000 0.00 0.00 38.56 2.52
1912 2888 7.961351 ACCATCTTTCATTGGAAACACATTAA 58.039 30.769 0.00 0.00 42.67 1.40
1913 2889 7.872483 ACCATCTTTCATTGGAAACACATTAAC 59.128 33.333 0.00 0.00 42.67 2.01
1914 2890 7.871973 CCATCTTTCATTGGAAACACATTAACA 59.128 33.333 0.00 0.00 42.67 2.41
1929 2905 7.047271 ACACATTAACAAACCTTGAATTGCTT 58.953 30.769 0.00 0.00 0.00 3.91
1931 2907 7.224362 CACATTAACAAACCTTGAATTGCTTGA 59.776 33.333 0.00 0.00 0.00 3.02
2043 3019 3.482156 AATGGACGAATCCCATCTCTG 57.518 47.619 0.00 0.00 45.59 3.35
2103 3079 3.342377 AACTTCCTAGAAGCTGAAGGC 57.658 47.619 13.52 0.00 39.79 4.35
2148 3124 4.622740 GCAAATTGTTCGCAGCTAGAAATT 59.377 37.500 5.51 1.62 0.00 1.82
2178 3154 1.995542 AGTGGGAATGTCCTGAATGGT 59.004 47.619 0.00 0.00 36.57 3.55
2308 3284 3.018856 CTCCAAATGCTTGCTATGGACA 58.981 45.455 9.34 0.00 35.33 4.02
2338 3314 4.538490 TGCTTTCAGGGGTTATTCCTTCTA 59.462 41.667 0.00 0.00 36.25 2.10
2371 3347 1.765230 AGACCGGCTAGTTGTCCTAG 58.235 55.000 0.00 0.00 45.17 3.02
2397 3373 5.716703 CCTATCAGGGAACAAATTTTCTGGT 59.283 40.000 0.00 0.00 0.00 4.00
2427 3403 5.474876 CCCATCTGCAATAGGTAATCTTTCC 59.525 44.000 0.00 0.00 0.00 3.13
2429 3405 5.708736 TCTGCAATAGGTAATCTTTCCCA 57.291 39.130 0.00 0.00 0.00 4.37
2436 3412 4.870021 AGGTAATCTTTCCCAGCTGAAT 57.130 40.909 17.39 0.00 0.00 2.57
2437 3413 4.786425 AGGTAATCTTTCCCAGCTGAATC 58.214 43.478 17.39 0.00 0.00 2.52
2629 3605 6.986817 CCTTACAGGATCAATACCACTACAAG 59.013 42.308 0.00 0.00 37.67 3.16
2638 3614 1.675552 ACCACTACAAGTTGGTGCAC 58.324 50.000 8.80 8.80 31.55 4.57
2650 3626 0.740149 TGGTGCACTGCTTCAACTTG 59.260 50.000 17.98 0.00 0.00 3.16
2651 3627 0.595825 GGTGCACTGCTTCAACTTGC 60.596 55.000 17.98 0.00 0.00 4.01
2655 3631 1.152963 ACTGCTTCAACTTGCCCGT 60.153 52.632 0.00 0.00 0.00 5.28
2668 3644 1.948104 TGCCCGTCTTGATATTTCCG 58.052 50.000 0.00 0.00 0.00 4.30
2691 3667 5.007234 CGTCAACAAATTGTCTGGTCAAGTA 59.993 40.000 0.00 0.00 37.11 2.24
2722 3698 2.198827 TGGCCAATGTGTCCAACTAG 57.801 50.000 0.61 0.00 0.00 2.57
2723 3699 1.423541 TGGCCAATGTGTCCAACTAGT 59.576 47.619 0.61 0.00 0.00 2.57
2724 3700 1.812571 GGCCAATGTGTCCAACTAGTG 59.187 52.381 0.00 0.00 0.00 2.74
2730 3706 5.047306 CCAATGTGTCCAACTAGTGTCTCTA 60.047 44.000 0.00 0.00 0.00 2.43
2858 3834 3.068590 CCAGAGTTCTTTGCAAACATGGT 59.931 43.478 8.05 0.00 33.99 3.55
2883 3859 2.636647 TGCACCAACTTGATCTGTCA 57.363 45.000 0.00 0.00 0.00 3.58
2884 3860 2.497138 TGCACCAACTTGATCTGTCAG 58.503 47.619 0.00 0.00 35.39 3.51
2904 3880 1.821666 GCCAACTACTTTGAAGGGCCA 60.822 52.381 6.18 0.00 37.39 5.36
2931 3907 1.202879 ACCGGTGGCATCTTTCAGAAA 60.203 47.619 6.12 0.00 0.00 2.52
2932 3908 2.094675 CCGGTGGCATCTTTCAGAAAT 58.905 47.619 0.00 0.00 0.00 2.17
2955 3931 5.636903 ATAGTGCAGTAATCTTGGATGGT 57.363 39.130 5.12 0.00 0.00 3.55
2975 3951 2.441717 TGCAGGGCTGTGTGCAAA 60.442 55.556 0.00 0.00 46.53 3.68
2995 3974 3.848272 ATGCAACCACCAACTTATTCG 57.152 42.857 0.00 0.00 0.00 3.34
2997 3976 3.417101 TGCAACCACCAACTTATTCGAT 58.583 40.909 0.00 0.00 0.00 3.59
3037 4016 0.516439 GTCAGCTGTTGAGAGCAAGC 59.484 55.000 14.67 0.00 41.83 4.01
3058 4040 4.399303 AGCATGCACTCCTATTGGTAAAAC 59.601 41.667 21.98 0.00 34.23 2.43
3066 4048 7.201794 GCACTCCTATTGGTAAAACTAATTCCC 60.202 40.741 0.00 0.00 31.57 3.97
3101 4083 3.244353 GCCTTGCTCTCCTTCATATGCTA 60.244 47.826 0.00 0.00 0.00 3.49
3112 4094 4.753610 CCTTCATATGCTATGTGGTCACTG 59.246 45.833 0.00 0.00 0.00 3.66
4199 5192 3.632643 TGCTGATTAACCTGCAGATCA 57.367 42.857 17.39 14.94 36.34 2.92
4228 5222 7.491696 ACGTTCTTGAATAAGAGTATAAGGTGC 59.508 37.037 0.00 0.00 43.41 5.01
4270 5264 6.839124 AATTGGTTCTGCAGATCACATTTA 57.161 33.333 19.04 4.50 0.00 1.40
4271 5265 7.414222 AATTGGTTCTGCAGATCACATTTAT 57.586 32.000 19.04 6.57 0.00 1.40
4291 5285 7.537596 TTTATGTGTTGGAAAATCACCAGAT 57.462 32.000 0.00 0.00 38.70 2.90
4371 5365 8.208903 GCTCCCTATGTTGGAAAAACTAGTATA 58.791 37.037 0.00 0.00 0.00 1.47
4622 6028 5.772672 ACCTGTTAACTTTCATATGGTTGCA 59.227 36.000 7.22 3.42 0.00 4.08
4623 6029 6.071952 ACCTGTTAACTTTCATATGGTTGCAG 60.072 38.462 7.22 11.08 32.62 4.41
4625 6031 6.676950 TGTTAACTTTCATATGGTTGCAGTG 58.323 36.000 7.22 0.00 0.00 3.66
4626 6032 6.264292 TGTTAACTTTCATATGGTTGCAGTGT 59.736 34.615 7.22 0.00 0.00 3.55
4627 6033 4.771590 ACTTTCATATGGTTGCAGTGTG 57.228 40.909 2.13 0.00 0.00 3.82
4628 6034 4.144297 ACTTTCATATGGTTGCAGTGTGT 58.856 39.130 2.13 0.00 0.00 3.72
4712 7823 3.131577 CCCTATTTGTTCATGTGCATGCT 59.868 43.478 20.33 0.00 38.65 3.79
4839 8648 6.611642 AGGTACCATTTGATAGCTCTAGTTGA 59.388 38.462 15.94 0.00 0.00 3.18
4911 8720 2.961536 TGGGGAGGAAATAGGAGTCA 57.038 50.000 0.00 0.00 0.00 3.41
4950 8765 1.068281 CTCGTGCTCATCTATGCCTGT 59.932 52.381 0.00 0.00 0.00 4.00
4957 8772 3.064545 GCTCATCTATGCCTGTTGAACAC 59.935 47.826 0.00 0.00 0.00 3.32
5055 8873 5.830457 TGTGATGTTTGGACATTTAAGGACA 59.170 36.000 0.00 0.00 46.27 4.02
5063 8881 8.764287 GTTTGGACATTTAAGGACATGAAAAAG 58.236 33.333 0.00 0.00 0.00 2.27
5183 9004 1.337728 CCAACCACATCACACGCTAGA 60.338 52.381 0.00 0.00 0.00 2.43
5184 9005 1.995484 CAACCACATCACACGCTAGAG 59.005 52.381 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 9.712305 CATCTTATATTTATGAACGAAGGGAGT 57.288 33.333 0.00 0.00 0.00 3.85
22 23 9.712305 ACATCTTATATTTATGAACGAAGGGAG 57.288 33.333 0.00 0.00 0.00 4.30
68 69 7.430992 TCATTCATTTCAGCTCATATGTAGC 57.569 36.000 15.30 15.30 40.40 3.58
69 70 8.833493 TGTTCATTCATTTCAGCTCATATGTAG 58.167 33.333 1.90 0.52 0.00 2.74
70 71 8.735692 TGTTCATTCATTTCAGCTCATATGTA 57.264 30.769 1.90 0.00 0.00 2.29
71 72 7.634671 TGTTCATTCATTTCAGCTCATATGT 57.365 32.000 1.90 0.00 0.00 2.29
72 73 8.804743 GTTTGTTCATTCATTTCAGCTCATATG 58.195 33.333 0.00 0.00 0.00 1.78
73 74 8.525316 TGTTTGTTCATTCATTTCAGCTCATAT 58.475 29.630 0.00 0.00 0.00 1.78
74 75 7.809331 GTGTTTGTTCATTCATTTCAGCTCATA 59.191 33.333 0.00 0.00 0.00 2.15
75 76 6.643770 GTGTTTGTTCATTCATTTCAGCTCAT 59.356 34.615 0.00 0.00 0.00 2.90
76 77 5.978919 GTGTTTGTTCATTCATTTCAGCTCA 59.021 36.000 0.00 0.00 0.00 4.26
77 78 5.978919 TGTGTTTGTTCATTCATTTCAGCTC 59.021 36.000 0.00 0.00 0.00 4.09
78 79 5.750067 GTGTGTTTGTTCATTCATTTCAGCT 59.250 36.000 0.00 0.00 0.00 4.24
79 80 5.750067 AGTGTGTTTGTTCATTCATTTCAGC 59.250 36.000 0.00 0.00 0.00 4.26
80 81 8.854979 TTAGTGTGTTTGTTCATTCATTTCAG 57.145 30.769 0.00 0.00 0.00 3.02
81 82 9.645059 TTTTAGTGTGTTTGTTCATTCATTTCA 57.355 25.926 0.00 0.00 0.00 2.69
82 83 9.900264 GTTTTAGTGTGTTTGTTCATTCATTTC 57.100 29.630 0.00 0.00 0.00 2.17
83 84 9.429359 TGTTTTAGTGTGTTTGTTCATTCATTT 57.571 25.926 0.00 0.00 0.00 2.32
84 85 8.994429 TGTTTTAGTGTGTTTGTTCATTCATT 57.006 26.923 0.00 0.00 0.00 2.57
85 86 9.033481 CATGTTTTAGTGTGTTTGTTCATTCAT 57.967 29.630 0.00 0.00 0.00 2.57
86 87 8.031864 ACATGTTTTAGTGTGTTTGTTCATTCA 58.968 29.630 0.00 0.00 0.00 2.57
87 88 8.406172 ACATGTTTTAGTGTGTTTGTTCATTC 57.594 30.769 0.00 0.00 0.00 2.67
88 89 8.250332 AGACATGTTTTAGTGTGTTTGTTCATT 58.750 29.630 0.00 0.00 0.00 2.57
89 90 7.771183 AGACATGTTTTAGTGTGTTTGTTCAT 58.229 30.769 0.00 0.00 0.00 2.57
90 91 7.151999 AGACATGTTTTAGTGTGTTTGTTCA 57.848 32.000 0.00 0.00 0.00 3.18
106 107 9.679661 TGTGAATTGGTTGTATATAGACATGTT 57.320 29.630 0.00 0.00 0.00 2.71
107 108 9.679661 TTGTGAATTGGTTGTATATAGACATGT 57.320 29.630 0.00 0.00 0.00 3.21
156 157 7.390718 AGAATTGTACTCCCTATGTTCACAAAC 59.609 37.037 0.00 0.00 35.85 2.93
157 158 7.458397 AGAATTGTACTCCCTATGTTCACAAA 58.542 34.615 0.00 0.00 0.00 2.83
158 159 7.016153 AGAATTGTACTCCCTATGTTCACAA 57.984 36.000 0.00 0.00 0.00 3.33
159 160 6.620877 AGAATTGTACTCCCTATGTTCACA 57.379 37.500 0.00 0.00 0.00 3.58
160 161 7.923414 AAAGAATTGTACTCCCTATGTTCAC 57.077 36.000 0.00 0.00 0.00 3.18
161 162 7.393234 CCAAAAGAATTGTACTCCCTATGTTCA 59.607 37.037 0.00 0.00 0.00 3.18
162 163 7.610305 TCCAAAAGAATTGTACTCCCTATGTTC 59.390 37.037 0.00 0.00 0.00 3.18
163 164 7.466804 TCCAAAAGAATTGTACTCCCTATGTT 58.533 34.615 0.00 0.00 0.00 2.71
164 165 7.027874 TCCAAAAGAATTGTACTCCCTATGT 57.972 36.000 0.00 0.00 0.00 2.29
165 166 7.775093 TGATCCAAAAGAATTGTACTCCCTATG 59.225 37.037 0.00 0.00 0.00 2.23
166 167 7.872138 TGATCCAAAAGAATTGTACTCCCTAT 58.128 34.615 0.00 0.00 0.00 2.57
167 168 7.265599 TGATCCAAAAGAATTGTACTCCCTA 57.734 36.000 0.00 0.00 0.00 3.53
168 169 6.139679 TGATCCAAAAGAATTGTACTCCCT 57.860 37.500 0.00 0.00 0.00 4.20
169 170 5.358160 CCTGATCCAAAAGAATTGTACTCCC 59.642 44.000 0.00 0.00 0.00 4.30
170 171 5.946377 ACCTGATCCAAAAGAATTGTACTCC 59.054 40.000 0.00 0.00 0.00 3.85
171 172 7.454260 AACCTGATCCAAAAGAATTGTACTC 57.546 36.000 0.00 0.00 0.00 2.59
172 173 7.121315 GCTAACCTGATCCAAAAGAATTGTACT 59.879 37.037 0.00 0.00 0.00 2.73
173 174 7.121315 AGCTAACCTGATCCAAAAGAATTGTAC 59.879 37.037 0.00 0.00 0.00 2.90
178 179 5.819991 TCAGCTAACCTGATCCAAAAGAAT 58.180 37.500 0.00 0.00 45.44 2.40
205 206 7.915293 TGTTTCATTATGTATCGTCCTGTTT 57.085 32.000 0.00 0.00 0.00 2.83
206 207 7.768582 TGATGTTTCATTATGTATCGTCCTGTT 59.231 33.333 0.00 0.00 0.00 3.16
210 211 7.915508 TGTTGATGTTTCATTATGTATCGTCC 58.084 34.615 0.00 0.00 0.00 4.79
220 221 9.898152 TCCATAGTGTATGTTGATGTTTCATTA 57.102 29.630 0.00 0.00 34.36 1.90
243 248 4.214310 TGGATTTGTTTTCTCTTGCTCCA 58.786 39.130 0.00 0.00 0.00 3.86
249 254 8.695456 AGTGTTACATTGGATTTGTTTTCTCTT 58.305 29.630 0.00 0.00 0.00 2.85
264 275 8.459521 TTGTCTTGTTTCAAAGTGTTACATTG 57.540 30.769 0.00 0.00 0.00 2.82
348 359 3.787676 CAATTCTGCCGTGCGCGA 61.788 61.111 23.45 0.00 42.08 5.87
369 386 2.558795 CTGGAACGGAGTGAGAGAGAAA 59.441 50.000 0.00 0.00 45.00 2.52
370 387 2.163509 CTGGAACGGAGTGAGAGAGAA 58.836 52.381 0.00 0.00 45.00 2.87
371 388 1.827681 CTGGAACGGAGTGAGAGAGA 58.172 55.000 0.00 0.00 45.00 3.10
372 389 0.172352 GCTGGAACGGAGTGAGAGAG 59.828 60.000 0.00 0.00 45.00 3.20
381 398 1.301401 CGTTGGAAGCTGGAACGGA 60.301 57.895 14.32 0.00 38.99 4.69
383 400 2.175184 CTGCGTTGGAAGCTGGAACG 62.175 60.000 16.70 16.70 44.11 3.95
387 404 2.974489 CTGCTGCGTTGGAAGCTGG 61.974 63.158 0.00 0.00 45.88 4.85
392 409 0.106708 AGACTTCTGCTGCGTTGGAA 59.893 50.000 0.00 0.00 0.00 3.53
404 421 1.270358 GCGTTCCCTTCACAGACTTCT 60.270 52.381 0.00 0.00 0.00 2.85
405 422 1.149148 GCGTTCCCTTCACAGACTTC 58.851 55.000 0.00 0.00 0.00 3.01
406 423 0.250338 GGCGTTCCCTTCACAGACTT 60.250 55.000 0.00 0.00 0.00 3.01
407 424 1.371558 GGCGTTCCCTTCACAGACT 59.628 57.895 0.00 0.00 0.00 3.24
408 425 2.027625 CGGCGTTCCCTTCACAGAC 61.028 63.158 0.00 0.00 0.00 3.51
409 426 2.342279 CGGCGTTCCCTTCACAGA 59.658 61.111 0.00 0.00 0.00 3.41
414 431 3.119096 GTCTGCGGCGTTCCCTTC 61.119 66.667 9.37 0.00 0.00 3.46
415 432 3.626924 AGTCTGCGGCGTTCCCTT 61.627 61.111 9.37 0.00 0.00 3.95
416 433 4.379243 CAGTCTGCGGCGTTCCCT 62.379 66.667 9.37 0.00 0.00 4.20
426 443 2.375766 CGAGGTGAACGCAGTCTGC 61.376 63.158 15.22 15.22 45.00 4.26
427 444 3.848142 CGAGGTGAACGCAGTCTG 58.152 61.111 0.00 0.00 45.00 3.51
434 451 0.527817 GAGGTATGGCGAGGTGAACG 60.528 60.000 0.00 0.00 0.00 3.95
435 452 0.824759 AGAGGTATGGCGAGGTGAAC 59.175 55.000 0.00 0.00 0.00 3.18
436 453 0.824109 CAGAGGTATGGCGAGGTGAA 59.176 55.000 0.00 0.00 0.00 3.18
437 454 0.324368 ACAGAGGTATGGCGAGGTGA 60.324 55.000 0.00 0.00 0.00 4.02
438 455 0.537188 AACAGAGGTATGGCGAGGTG 59.463 55.000 0.00 0.00 0.00 4.00
439 456 1.207329 GAAACAGAGGTATGGCGAGGT 59.793 52.381 0.00 0.00 0.00 3.85
440 457 1.482593 AGAAACAGAGGTATGGCGAGG 59.517 52.381 0.00 0.00 0.00 4.63
441 458 2.428890 AGAGAAACAGAGGTATGGCGAG 59.571 50.000 0.00 0.00 0.00 5.03
442 459 2.457598 AGAGAAACAGAGGTATGGCGA 58.542 47.619 0.00 0.00 0.00 5.54
443 460 2.932614 CAAGAGAAACAGAGGTATGGCG 59.067 50.000 0.00 0.00 0.00 5.69
444 461 3.944087 ACAAGAGAAACAGAGGTATGGC 58.056 45.455 0.00 0.00 0.00 4.40
445 462 4.697352 CCAACAAGAGAAACAGAGGTATGG 59.303 45.833 0.00 0.00 0.00 2.74
446 463 4.154918 GCCAACAAGAGAAACAGAGGTATG 59.845 45.833 0.00 0.00 0.00 2.39
447 464 4.327680 GCCAACAAGAGAAACAGAGGTAT 58.672 43.478 0.00 0.00 0.00 2.73
448 465 3.496160 GGCCAACAAGAGAAACAGAGGTA 60.496 47.826 0.00 0.00 0.00 3.08
449 466 2.576615 GCCAACAAGAGAAACAGAGGT 58.423 47.619 0.00 0.00 0.00 3.85
450 467 1.882623 GGCCAACAAGAGAAACAGAGG 59.117 52.381 0.00 0.00 0.00 3.69
451 468 1.532868 CGGCCAACAAGAGAAACAGAG 59.467 52.381 2.24 0.00 0.00 3.35
452 469 1.140052 TCGGCCAACAAGAGAAACAGA 59.860 47.619 2.24 0.00 0.00 3.41
453 470 1.532868 CTCGGCCAACAAGAGAAACAG 59.467 52.381 2.24 0.00 34.13 3.16
454 471 1.593196 CTCGGCCAACAAGAGAAACA 58.407 50.000 2.24 0.00 34.13 2.83
455 472 0.875059 CCTCGGCCAACAAGAGAAAC 59.125 55.000 2.24 0.00 34.13 2.78
456 473 0.889186 GCCTCGGCCAACAAGAGAAA 60.889 55.000 2.24 0.00 34.13 2.52
457 474 1.302511 GCCTCGGCCAACAAGAGAA 60.303 57.895 2.24 0.00 34.13 2.87
458 475 2.347490 GCCTCGGCCAACAAGAGA 59.653 61.111 2.24 0.00 34.13 3.10
471 488 3.474570 ATGCACTCCTCCGGCCTC 61.475 66.667 0.00 0.00 0.00 4.70
472 489 3.790437 CATGCACTCCTCCGGCCT 61.790 66.667 0.00 0.00 0.00 5.19
515 532 0.247145 CTCGATTTTCGGCGTTTCGG 60.247 55.000 6.85 2.93 40.88 4.30
516 533 0.247145 CCTCGATTTTCGGCGTTTCG 60.247 55.000 6.85 11.50 40.88 3.46
517 534 0.794473 ACCTCGATTTTCGGCGTTTC 59.206 50.000 6.85 0.00 40.88 2.78
518 535 0.794473 GACCTCGATTTTCGGCGTTT 59.206 50.000 6.85 0.00 40.88 3.60
519 536 1.349259 CGACCTCGATTTTCGGCGTT 61.349 55.000 6.85 0.00 40.88 4.84
520 537 1.804326 CGACCTCGATTTTCGGCGT 60.804 57.895 6.85 0.00 40.88 5.68
521 538 2.995482 CGACCTCGATTTTCGGCG 59.005 61.111 0.00 0.00 40.88 6.46
522 539 2.701606 GCGACCTCGATTTTCGGC 59.298 61.111 11.13 2.44 40.88 5.54
523 540 2.514013 CGGCGACCTCGATTTTCGG 61.514 63.158 0.00 0.00 40.88 4.30
524 541 2.995482 CGGCGACCTCGATTTTCG 59.005 61.111 0.00 6.19 43.02 3.46
525 542 2.701606 GCGGCGACCTCGATTTTC 59.298 61.111 12.98 0.00 43.02 2.29
526 543 2.818274 GGCGGCGACCTCGATTTT 60.818 61.111 12.98 0.00 43.02 1.82
532 549 4.424566 TTACACGGCGGCGACCTC 62.425 66.667 38.93 0.00 0.00 3.85
533 550 4.430765 CTTACACGGCGGCGACCT 62.431 66.667 38.93 20.41 0.00 3.85
536 553 4.444838 ATGCTTACACGGCGGCGA 62.445 61.111 38.93 13.60 0.00 5.54
537 554 4.222589 CATGCTTACACGGCGGCG 62.223 66.667 31.06 31.06 0.00 6.46
538 555 3.124921 ACATGCTTACACGGCGGC 61.125 61.111 13.24 4.77 0.00 6.53
539 556 2.032634 ACACATGCTTACACGGCGG 61.033 57.895 13.24 2.35 0.00 6.13
540 557 1.132436 CACACATGCTTACACGGCG 59.868 57.895 4.80 4.80 0.00 6.46
551 568 1.379044 GAGGAAGGGGGCACACATG 60.379 63.158 0.00 0.00 0.00 3.21
552 569 1.142688 AAGAGGAAGGGGGCACACAT 61.143 55.000 0.00 0.00 0.00 3.21
553 570 1.774217 AAGAGGAAGGGGGCACACA 60.774 57.895 0.00 0.00 0.00 3.72
554 571 1.002011 GAAGAGGAAGGGGGCACAC 60.002 63.158 0.00 0.00 0.00 3.82
555 572 1.151810 AGAAGAGGAAGGGGGCACA 60.152 57.895 0.00 0.00 0.00 4.57
556 573 1.604915 GAGAAGAGGAAGGGGGCAC 59.395 63.158 0.00 0.00 0.00 5.01
557 574 1.616628 GGAGAAGAGGAAGGGGGCA 60.617 63.158 0.00 0.00 0.00 5.36
558 575 1.307430 AGGAGAAGAGGAAGGGGGC 60.307 63.158 0.00 0.00 0.00 5.80
559 576 0.252927 ACAGGAGAAGAGGAAGGGGG 60.253 60.000 0.00 0.00 0.00 5.40
560 577 1.199615 GACAGGAGAAGAGGAAGGGG 58.800 60.000 0.00 0.00 0.00 4.79
561 578 0.820871 CGACAGGAGAAGAGGAAGGG 59.179 60.000 0.00 0.00 0.00 3.95
562 579 0.820871 CCGACAGGAGAAGAGGAAGG 59.179 60.000 0.00 0.00 41.02 3.46
563 580 1.474879 GACCGACAGGAGAAGAGGAAG 59.525 57.143 0.00 0.00 41.02 3.46
564 581 1.546961 GACCGACAGGAGAAGAGGAA 58.453 55.000 0.00 0.00 41.02 3.36
565 582 0.323542 GGACCGACAGGAGAAGAGGA 60.324 60.000 0.00 0.00 41.02 3.71
566 583 0.612174 TGGACCGACAGGAGAAGAGG 60.612 60.000 0.00 0.00 41.02 3.69
567 584 1.067495 GTTGGACCGACAGGAGAAGAG 60.067 57.143 7.02 0.00 41.02 2.85
568 585 0.966920 GTTGGACCGACAGGAGAAGA 59.033 55.000 7.02 0.00 41.02 2.87
569 586 0.037232 GGTTGGACCGACAGGAGAAG 60.037 60.000 14.09 0.00 41.02 2.85
570 587 0.761323 TGGTTGGACCGACAGGAGAA 60.761 55.000 14.09 0.00 42.58 2.87
571 588 1.152419 TGGTTGGACCGACAGGAGA 60.152 57.895 14.09 0.00 42.58 3.71
572 589 1.004918 GTGGTTGGACCGACAGGAG 60.005 63.158 14.09 0.00 42.58 3.69
573 590 1.762858 TGTGGTTGGACCGACAGGA 60.763 57.895 14.09 0.00 42.58 3.86
574 591 1.597027 GTGTGGTTGGACCGACAGG 60.597 63.158 14.09 0.00 42.58 4.00
575 592 0.880278 CTGTGTGGTTGGACCGACAG 60.880 60.000 14.09 12.11 42.58 3.51
576 593 1.145156 CTGTGTGGTTGGACCGACA 59.855 57.895 14.09 0.00 42.58 4.35
577 594 0.600255 CTCTGTGTGGTTGGACCGAC 60.600 60.000 2.85 2.85 42.58 4.79
578 595 1.046472 ACTCTGTGTGGTTGGACCGA 61.046 55.000 0.00 0.00 42.58 4.69
579 596 0.600255 GACTCTGTGTGGTTGGACCG 60.600 60.000 0.00 0.00 42.58 4.79
580 597 0.250338 GGACTCTGTGTGGTTGGACC 60.250 60.000 0.00 0.00 39.22 4.46
581 598 0.468226 TGGACTCTGTGTGGTTGGAC 59.532 55.000 0.00 0.00 0.00 4.02
582 599 0.758734 CTGGACTCTGTGTGGTTGGA 59.241 55.000 0.00 0.00 0.00 3.53
583 600 0.469917 ACTGGACTCTGTGTGGTTGG 59.530 55.000 0.00 0.00 0.00 3.77
584 601 1.414181 AGACTGGACTCTGTGTGGTTG 59.586 52.381 0.00 0.00 0.00 3.77
585 602 1.689273 GAGACTGGACTCTGTGTGGTT 59.311 52.381 0.00 0.00 34.47 3.67
586 603 1.333177 GAGACTGGACTCTGTGTGGT 58.667 55.000 0.00 0.00 34.47 4.16
587 604 0.605589 GGAGACTGGACTCTGTGTGG 59.394 60.000 0.00 0.00 37.13 4.17
588 605 1.271934 CTGGAGACTGGACTCTGTGTG 59.728 57.143 0.00 0.00 37.13 3.82
589 606 1.133325 ACTGGAGACTGGACTCTGTGT 60.133 52.381 0.00 0.00 37.13 3.72
590 607 1.543802 GACTGGAGACTGGACTCTGTG 59.456 57.143 0.00 0.00 37.13 3.66
591 608 1.549037 GGACTGGAGACTGGACTCTGT 60.549 57.143 0.00 0.00 37.13 3.41
592 609 1.181786 GGACTGGAGACTGGACTCTG 58.818 60.000 0.00 0.00 37.13 3.35
593 610 0.780637 TGGACTGGAGACTGGACTCT 59.219 55.000 0.00 0.00 37.13 3.24
594 611 0.892063 GTGGACTGGAGACTGGACTC 59.108 60.000 0.00 0.00 36.31 3.36
595 612 0.543174 GGTGGACTGGAGACTGGACT 60.543 60.000 0.00 0.00 0.00 3.85
596 613 0.832135 TGGTGGACTGGAGACTGGAC 60.832 60.000 0.00 0.00 0.00 4.02
597 614 0.832135 GTGGTGGACTGGAGACTGGA 60.832 60.000 0.00 0.00 0.00 3.86
598 615 1.121407 TGTGGTGGACTGGAGACTGG 61.121 60.000 0.00 0.00 0.00 4.00
599 616 0.979665 ATGTGGTGGACTGGAGACTG 59.020 55.000 0.00 0.00 0.00 3.51
600 617 1.270907 GATGTGGTGGACTGGAGACT 58.729 55.000 0.00 0.00 0.00 3.24
601 618 0.250513 GGATGTGGTGGACTGGAGAC 59.749 60.000 0.00 0.00 0.00 3.36
602 619 0.909610 GGGATGTGGTGGACTGGAGA 60.910 60.000 0.00 0.00 0.00 3.71
603 620 1.200760 TGGGATGTGGTGGACTGGAG 61.201 60.000 0.00 0.00 0.00 3.86
604 621 0.770166 TTGGGATGTGGTGGACTGGA 60.770 55.000 0.00 0.00 0.00 3.86
605 622 0.332632 ATTGGGATGTGGTGGACTGG 59.667 55.000 0.00 0.00 0.00 4.00
606 623 1.004628 TGATTGGGATGTGGTGGACTG 59.995 52.381 0.00 0.00 0.00 3.51
607 624 1.371467 TGATTGGGATGTGGTGGACT 58.629 50.000 0.00 0.00 0.00 3.85
608 625 2.094675 CTTGATTGGGATGTGGTGGAC 58.905 52.381 0.00 0.00 0.00 4.02
609 626 1.616725 GCTTGATTGGGATGTGGTGGA 60.617 52.381 0.00 0.00 0.00 4.02
610 627 0.819582 GCTTGATTGGGATGTGGTGG 59.180 55.000 0.00 0.00 0.00 4.61
611 628 1.475280 CTGCTTGATTGGGATGTGGTG 59.525 52.381 0.00 0.00 0.00 4.17
612 629 1.355381 TCTGCTTGATTGGGATGTGGT 59.645 47.619 0.00 0.00 0.00 4.16
613 630 2.022195 CTCTGCTTGATTGGGATGTGG 58.978 52.381 0.00 0.00 0.00 4.17
614 631 1.404391 GCTCTGCTTGATTGGGATGTG 59.596 52.381 0.00 0.00 0.00 3.21
615 632 1.005097 TGCTCTGCTTGATTGGGATGT 59.995 47.619 0.00 0.00 0.00 3.06
616 633 1.758936 TGCTCTGCTTGATTGGGATG 58.241 50.000 0.00 0.00 0.00 3.51
617 634 2.307768 CATGCTCTGCTTGATTGGGAT 58.692 47.619 0.00 0.00 36.06 3.85
620 637 2.876091 CAACATGCTCTGCTTGATTGG 58.124 47.619 11.46 0.00 37.20 3.16
671 724 4.151121 TCATTTTGTCAAGAAGATGGGCA 58.849 39.130 0.00 0.00 0.00 5.36
692 745 2.233922 TGAGAATGAAGGTCGGGTCTTC 59.766 50.000 0.00 0.00 40.57 2.87
697 750 2.472695 TGTTGAGAATGAAGGTCGGG 57.527 50.000 0.00 0.00 0.00 5.14
703 756 6.860023 GTCAGTGGAAATTGTTGAGAATGAAG 59.140 38.462 0.00 0.00 0.00 3.02
704 757 6.547141 AGTCAGTGGAAATTGTTGAGAATGAA 59.453 34.615 0.00 0.00 0.00 2.57
709 763 6.591935 AGTTAGTCAGTGGAAATTGTTGAGA 58.408 36.000 0.00 0.00 0.00 3.27
712 766 6.708054 AGAGAGTTAGTCAGTGGAAATTGTTG 59.292 38.462 0.00 0.00 0.00 3.33
725 779 2.355920 GGGAGACCGAGAGAGTTAGTCA 60.356 54.545 0.00 0.00 43.64 3.41
740 794 3.003763 AGCTTGGGACCGGGAGAC 61.004 66.667 6.32 0.00 0.00 3.36
741 795 3.003173 CAGCTTGGGACCGGGAGA 61.003 66.667 6.32 0.00 0.00 3.71
742 796 3.316573 GACAGCTTGGGACCGGGAG 62.317 68.421 6.32 0.00 0.00 4.30
743 797 3.319198 GACAGCTTGGGACCGGGA 61.319 66.667 6.32 0.00 0.00 5.14
744 798 3.612247 CTGACAGCTTGGGACCGGG 62.612 68.421 6.32 0.00 0.00 5.73
745 799 1.541310 TACTGACAGCTTGGGACCGG 61.541 60.000 0.00 0.00 0.00 5.28
763 1007 3.737047 GCGATACTTTGCTAGGTGTGCTA 60.737 47.826 0.00 0.00 0.00 3.49
787 1031 4.074970 GTCCATGAAGTTGATCCAACACT 58.925 43.478 11.73 0.00 45.66 3.55
809 1053 2.032528 TCTGCAAAGGCTGGTCCG 59.967 61.111 0.00 0.00 41.91 4.79
817 1061 3.439476 CAGAAAGAGATGGTCTGCAAAGG 59.561 47.826 0.00 0.00 34.84 3.11
855 1099 1.417890 GTGGATGGGAATCGACAGGAT 59.582 52.381 0.00 0.00 36.78 3.24
877 1121 1.376812 CCCCAGCGGTAGAACAACC 60.377 63.158 0.00 0.00 36.08 3.77
887 1131 3.953775 AGACCAACACCCCAGCGG 61.954 66.667 0.00 0.00 37.81 5.52
893 1137 0.400213 TCCATCACAGACCAACACCC 59.600 55.000 0.00 0.00 0.00 4.61
895 1139 1.072331 ACCTCCATCACAGACCAACAC 59.928 52.381 0.00 0.00 0.00 3.32
905 1149 3.412386 ACTTGCTTGTAACCTCCATCAC 58.588 45.455 0.00 0.00 0.00 3.06
951 1195 3.748048 GCGCATTCCTTCTCTATTATGCA 59.252 43.478 0.30 0.00 38.55 3.96
952 1196 3.748048 TGCGCATTCCTTCTCTATTATGC 59.252 43.478 5.66 0.00 36.07 3.14
957 1201 2.988010 TGTGCGCATTCCTTCTCTAT 57.012 45.000 15.91 0.00 0.00 1.98
958 1202 2.233676 TCTTGTGCGCATTCCTTCTCTA 59.766 45.455 15.91 0.00 0.00 2.43
974 1218 2.455674 TGCAGCGTATCTTGTCTTGT 57.544 45.000 0.00 0.00 0.00 3.16
975 1219 4.805719 TCTAATGCAGCGTATCTTGTCTTG 59.194 41.667 0.00 0.00 0.00 3.02
976 1220 4.806247 GTCTAATGCAGCGTATCTTGTCTT 59.194 41.667 0.00 0.00 0.00 3.01
977 1221 4.142160 TGTCTAATGCAGCGTATCTTGTCT 60.142 41.667 0.00 0.00 0.00 3.41
986 1230 0.392863 TGCCATGTCTAATGCAGCGT 60.393 50.000 0.00 0.00 0.00 5.07
988 1232 0.383231 GGTGCCATGTCTAATGCAGC 59.617 55.000 5.94 5.94 43.75 5.25
1033 1283 4.785346 AGAGAAATAGGATGCCATGTGT 57.215 40.909 0.00 0.00 0.00 3.72
1080 1330 0.591170 ATTTTGCGACGGTGTTGGAG 59.409 50.000 0.00 0.00 0.00 3.86
1427 1680 6.498651 GGATCTAGGAATGATACCTTCAAGGA 59.501 42.308 11.59 0.00 37.67 3.36
1515 1768 2.311542 TGGCAACCTATGGAAATCTGGT 59.688 45.455 0.00 0.00 0.00 4.00
1569 1822 7.654022 AGATCTAGGAATGCTACCTATAAGC 57.346 40.000 0.00 0.00 38.98 3.09
1573 1826 7.125053 GCCTAAAGATCTAGGAATGCTACCTAT 59.875 40.741 14.74 0.00 41.02 2.57
1580 1833 4.967036 AGTGCCTAAAGATCTAGGAATGC 58.033 43.478 14.74 5.53 41.02 3.56
1708 2171 3.636153 AGGTATGCTTCCAGAAAGGTC 57.364 47.619 0.00 0.00 39.02 3.85
1755 2218 6.070767 GCATACTAAGGTTCTGGATATGGCTA 60.071 42.308 0.00 0.00 0.00 3.93
1760 2418 6.784969 ACTCAGCATACTAAGGTTCTGGATAT 59.215 38.462 0.00 0.00 0.00 1.63
1798 2774 0.322546 GAAAGATGCCCCGACAGGTT 60.323 55.000 0.00 0.00 35.12 3.50
1815 2791 3.504906 AGATGTTACAGAGTTCGGACGAA 59.495 43.478 2.62 2.62 0.00 3.85
1819 2795 4.705023 TGATGAGATGTTACAGAGTTCGGA 59.295 41.667 0.00 0.00 0.00 4.55
1822 2798 6.625362 TGAGTGATGAGATGTTACAGAGTTC 58.375 40.000 0.00 0.00 0.00 3.01
1857 2833 4.446371 CAGTTAGGTCATTCTGGGCTAAG 58.554 47.826 0.00 0.00 0.00 2.18
1870 2846 4.466726 AGATGGTACTTGTCCAGTTAGGTC 59.533 45.833 0.00 0.00 38.42 3.85
1895 2871 7.118496 AGGTTTGTTAATGTGTTTCCAATGA 57.882 32.000 0.00 0.00 0.00 2.57
1912 2888 4.734398 TGTCAAGCAATTCAAGGTTTGT 57.266 36.364 0.00 0.00 0.00 2.83
1913 2889 5.051816 ACATGTCAAGCAATTCAAGGTTTG 58.948 37.500 0.00 0.00 0.00 2.93
1914 2890 5.163426 TGACATGTCAAGCAATTCAAGGTTT 60.163 36.000 26.02 0.00 36.53 3.27
1929 2905 6.016360 CCTCAAATTTGTTACCTGACATGTCA 60.016 38.462 26.33 26.33 38.06 3.58
1931 2907 5.243730 CCCTCAAATTTGTTACCTGACATGT 59.756 40.000 17.47 0.00 0.00 3.21
2043 3019 8.476447 AGTAGCTGTAAGTTAAGTAAAGATCCC 58.524 37.037 0.00 0.00 35.30 3.85
2103 3079 3.430098 CGAGAGAGACAAGGAATTCCCAG 60.430 52.174 21.22 15.67 37.41 4.45
2148 3124 3.831911 GGACATTCCCACTCATTTCCAAA 59.168 43.478 0.00 0.00 0.00 3.28
2178 3154 2.024273 CCCAACAGACCTAGGGAGACTA 60.024 54.545 14.81 0.00 44.30 2.59
2247 3223 2.930040 CTCAACTGGTATTGTGCCTACG 59.070 50.000 0.00 0.00 0.00 3.51
2308 3284 5.887214 ATAACCCCTGAAAGCAAGTTTTT 57.113 34.783 0.00 0.00 0.00 1.94
2338 3314 2.245582 CCGGTCTAGGTTCCCGATAAT 58.754 52.381 11.09 0.00 44.41 1.28
2371 3347 6.127619 CCAGAAAATTTGTTCCCTGATAGGTC 60.128 42.308 0.00 0.00 31.93 3.85
2410 3386 4.276926 CAGCTGGGAAAGATTACCTATTGC 59.723 45.833 5.57 0.00 0.00 3.56
2436 3412 5.276461 TGTTGTTGTCTAGAGAAAGCTGA 57.724 39.130 3.51 0.00 0.00 4.26
2437 3413 5.525378 AGTTGTTGTTGTCTAGAGAAAGCTG 59.475 40.000 3.51 0.00 0.00 4.24
2516 3492 6.151144 TCCTTCAAGGCTGTTAAAAGATAAGC 59.849 38.462 0.00 0.00 34.61 3.09
2629 3605 0.740737 AGTTGAAGCAGTGCACCAAC 59.259 50.000 29.53 29.53 40.54 3.77
2638 3614 0.886490 AGACGGGCAAGTTGAAGCAG 60.886 55.000 7.16 0.00 0.00 4.24
2650 3626 1.865340 GACGGAAATATCAAGACGGGC 59.135 52.381 0.00 0.00 0.00 6.13
2651 3627 3.173668 TGACGGAAATATCAAGACGGG 57.826 47.619 0.00 0.00 0.00 5.28
2655 3631 7.881142 ACAATTTGTTGACGGAAATATCAAGA 58.119 30.769 0.00 0.00 35.55 3.02
2668 3644 5.248870 ACTTGACCAGACAATTTGTTGAC 57.751 39.130 3.08 0.00 0.00 3.18
2691 3667 3.448301 CACATTGGCCAAGTGATAATGGT 59.552 43.478 29.31 13.43 39.00 3.55
2722 3698 9.081997 CATGTTACTTCTCAATCTTAGAGACAC 57.918 37.037 0.00 0.00 41.53 3.67
2723 3699 7.761704 GCATGTTACTTCTCAATCTTAGAGACA 59.238 37.037 0.00 0.00 41.53 3.41
2724 3700 7.978975 AGCATGTTACTTCTCAATCTTAGAGAC 59.021 37.037 0.00 0.00 41.53 3.36
2730 3706 8.680903 CCATTAAGCATGTTACTTCTCAATCTT 58.319 33.333 0.00 0.00 0.00 2.40
2781 3757 4.880120 TCAATCTGATCAATGGACTTCAGC 59.120 41.667 0.00 0.00 36.41 4.26
2858 3834 6.040278 TGACAGATCAAGTTGGTGCAAATAAA 59.960 34.615 2.34 0.00 0.00 1.40
2868 3844 2.189594 TGGCTGACAGATCAAGTTGG 57.810 50.000 6.65 0.00 33.30 3.77
2883 3859 1.547901 GGCCCTTCAAAGTAGTTGGCT 60.548 52.381 8.13 0.00 37.85 4.75
2884 3860 0.888619 GGCCCTTCAAAGTAGTTGGC 59.111 55.000 0.00 0.89 37.85 4.52
2904 3880 0.039618 AGATGCCACCGGTTGGAATT 59.960 50.000 22.51 9.07 45.09 2.17
2931 3907 7.321717 ACCATCCAAGATTACTGCACTATAT 57.678 36.000 0.00 0.00 0.00 0.86
2932 3908 6.747414 ACCATCCAAGATTACTGCACTATA 57.253 37.500 0.00 0.00 0.00 1.31
2955 3931 0.539207 TTGCACACAGCCCTGCATTA 60.539 50.000 0.00 0.00 42.86 1.90
2975 3951 3.417101 TCGAATAAGTTGGTGGTTGCAT 58.583 40.909 0.00 0.00 0.00 3.96
2987 3966 4.157840 GGCAAAGTGGGAAATCGAATAAGT 59.842 41.667 0.00 0.00 0.00 2.24
2995 3974 0.608130 GTGGGGCAAAGTGGGAAATC 59.392 55.000 0.00 0.00 0.00 2.17
2997 3976 0.325671 TTGTGGGGCAAAGTGGGAAA 60.326 50.000 0.00 0.00 33.53 3.13
3037 4016 7.624360 TTAGTTTTACCAATAGGAGTGCATG 57.376 36.000 0.00 0.00 38.69 4.06
3058 4040 4.262592 GGCAATAGCAATTGGGGGAATTAG 60.263 45.833 7.72 0.00 42.39 1.73
3066 4048 1.483415 AGCAAGGCAATAGCAATTGGG 59.517 47.619 7.72 0.00 42.39 4.12
3101 4083 3.643320 TCTCTTCAGAACAGTGACCACAT 59.357 43.478 0.00 0.00 0.00 3.21
3112 4094 2.483491 CTGCTTGCCTTCTCTTCAGAAC 59.517 50.000 0.00 0.00 34.71 3.01
4040 5033 6.039829 CCATATATCTCCGCATAAGCACTCTA 59.960 42.308 0.00 0.00 42.27 2.43
4199 5192 9.367444 CCTTATACTCTTATTCAAGAACGTGTT 57.633 33.333 0.00 0.00 40.28 3.32
4228 5222 8.687824 ACCAATTTTTACAGCAAAGATATTCG 57.312 30.769 0.00 0.00 0.00 3.34
4270 5264 5.327732 AGATCTGGTGATTTTCCAACACAT 58.672 37.500 0.00 0.00 36.42 3.21
4271 5265 4.728772 AGATCTGGTGATTTTCCAACACA 58.271 39.130 0.00 0.00 36.42 3.72
4316 5310 4.238514 ACTGAACATGTACTCTTTCGAGC 58.761 43.478 0.00 0.00 41.09 5.03
4559 5965 5.473796 CAGGTTAACACGTGTACTGTTTT 57.526 39.130 23.69 6.84 34.61 2.43
4571 5977 6.431198 TCAGTTCAAAAGACAGGTTAACAC 57.569 37.500 8.10 0.00 0.00 3.32
4622 6028 7.526142 TCAGTTGAAGATACTCTAACACACT 57.474 36.000 0.00 0.00 0.00 3.55
4623 6029 7.868415 AGTTCAGTTGAAGATACTCTAACACAC 59.132 37.037 0.00 0.00 34.27 3.82
4625 6031 8.819643 AAGTTCAGTTGAAGATACTCTAACAC 57.180 34.615 0.00 0.00 34.27 3.32
4626 6032 9.909644 GTAAGTTCAGTTGAAGATACTCTAACA 57.090 33.333 0.00 0.00 34.27 2.41
4639 6567 3.128349 GCGGACAAGTAAGTTCAGTTGA 58.872 45.455 0.00 0.00 33.79 3.18
4712 7823 3.537580 GCACAATTTAGGGGATACGACA 58.462 45.455 0.00 0.00 37.60 4.35
4815 8624 6.817184 TCAACTAGAGCTATCAAATGGTACC 58.183 40.000 4.43 4.43 0.00 3.34
4820 8629 7.281774 ACACCATTCAACTAGAGCTATCAAATG 59.718 37.037 0.00 0.00 0.00 2.32
4839 8648 8.797438 GGATAAGAGAGAAAGAAAAACACCATT 58.203 33.333 0.00 0.00 0.00 3.16
4877 8686 2.573462 CTCCCCATATGTTCGGATGGAT 59.427 50.000 1.24 0.00 44.72 3.41
4911 8720 3.735208 CGAGCTCAGACATGAATTACCGT 60.735 47.826 15.40 0.00 34.23 4.83
5055 8873 7.123355 TGGACCTGATTTGTTTCTTTTTCAT 57.877 32.000 0.00 0.00 0.00 2.57
5063 8881 5.863935 GCACTATTTGGACCTGATTTGTTTC 59.136 40.000 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.