Multiple sequence alignment - TraesCS2D01G066700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G066700 chr2D 100.000 5296 0 0 1 5296 27983182 27977887 0.000000e+00 9780
1 TraesCS2D01G066700 chr2D 85.276 3654 487 37 902 4526 27995573 27991942 0.000000e+00 3720
2 TraesCS2D01G066700 chr2D 86.880 3346 394 20 988 4312 27953310 27949989 0.000000e+00 3705
3 TraesCS2D01G066700 chr2D 88.117 3038 323 31 864 3881 27935631 27932612 0.000000e+00 3576
4 TraesCS2D01G066700 chr2D 88.331 1714 184 8 2699 4411 27965863 27964165 0.000000e+00 2043
5 TraesCS2D01G066700 chr2D 86.240 1577 217 0 988 2564 27967437 27965861 0.000000e+00 1711
6 TraesCS2D01G066700 chr2D 94.886 176 9 0 3 178 40204318 40204143 5.220000e-70 276
7 TraesCS2D01G066700 chr2A 89.908 3805 344 18 843 4622 30170962 30167173 0.000000e+00 4863
8 TraesCS2D01G066700 chr2A 86.583 3518 424 27 904 4394 30179156 30175660 0.000000e+00 3838
9 TraesCS2D01G066700 chr2A 91.037 2198 195 2 1401 3597 30157761 30155565 0.000000e+00 2966
10 TraesCS2D01G066700 chr2A 91.265 664 35 8 174 819 30171606 30170948 0.000000e+00 883
11 TraesCS2D01G066700 chr2A 87.719 684 67 12 4621 5296 30167422 30166748 0.000000e+00 782
12 TraesCS2D01G066700 chr2B 86.415 3526 438 32 904 4408 45549934 45553439 0.000000e+00 3819
13 TraesCS2D01G066700 chr2B 86.232 3450 435 23 988 4422 45672569 45675993 0.000000e+00 3703
14 TraesCS2D01G066700 chr2B 85.995 3413 449 18 988 4389 44745923 44742529 0.000000e+00 3627
15 TraesCS2D01G066700 chr2B 86.411 2789 303 36 174 2917 44435971 44433214 0.000000e+00 2981
16 TraesCS2D01G066700 chr2B 88.379 2005 205 13 2327 4329 45679788 45681766 0.000000e+00 2386
17 TraesCS2D01G066700 chr2B 85.495 1565 161 28 277 1806 45678250 45679783 0.000000e+00 1572
18 TraesCS2D01G066700 chr2B 92.288 778 53 3 3525 4297 44433208 44432433 0.000000e+00 1098
19 TraesCS2D01G066700 chr7D 95.429 175 7 1 3 177 264303496 264303323 1.450000e-70 278
20 TraesCS2D01G066700 chr6D 95.429 175 6 2 3 177 317116685 317116857 1.450000e-70 278
21 TraesCS2D01G066700 chr6D 94.886 176 7 2 3 177 449777213 449777039 1.880000e-69 274
22 TraesCS2D01G066700 chr6D 95.833 168 6 1 3 170 348659505 348659671 2.430000e-68 270
23 TraesCS2D01G066700 chr5D 95.429 175 7 1 3 177 422940640 422940813 1.450000e-70 278
24 TraesCS2D01G066700 chrUn 93.956 182 11 0 3 184 459024930 459025111 5.220000e-70 276
25 TraesCS2D01G066700 chr1D 94.857 175 7 2 3 177 223410447 223410619 6.760000e-69 272
26 TraesCS2D01G066700 chr1D 93.956 182 8 2 3 181 225406581 225406400 6.760000e-69 272


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G066700 chr2D 27977887 27983182 5295 True 9780.000000 9780 100.000000 1 5296 1 chr2D.!!$R3 5295
1 TraesCS2D01G066700 chr2D 27991942 27995573 3631 True 3720.000000 3720 85.276000 902 4526 1 chr2D.!!$R4 3624
2 TraesCS2D01G066700 chr2D 27949989 27953310 3321 True 3705.000000 3705 86.880000 988 4312 1 chr2D.!!$R2 3324
3 TraesCS2D01G066700 chr2D 27932612 27935631 3019 True 3576.000000 3576 88.117000 864 3881 1 chr2D.!!$R1 3017
4 TraesCS2D01G066700 chr2D 27964165 27967437 3272 True 1877.000000 2043 87.285500 988 4411 2 chr2D.!!$R6 3423
5 TraesCS2D01G066700 chr2A 30175660 30179156 3496 True 3838.000000 3838 86.583000 904 4394 1 chr2A.!!$R2 3490
6 TraesCS2D01G066700 chr2A 30155565 30157761 2196 True 2966.000000 2966 91.037000 1401 3597 1 chr2A.!!$R1 2196
7 TraesCS2D01G066700 chr2A 30166748 30171606 4858 True 2176.000000 4863 89.630667 174 5296 3 chr2A.!!$R3 5122
8 TraesCS2D01G066700 chr2B 45549934 45553439 3505 False 3819.000000 3819 86.415000 904 4408 1 chr2B.!!$F1 3504
9 TraesCS2D01G066700 chr2B 44742529 44745923 3394 True 3627.000000 3627 85.995000 988 4389 1 chr2B.!!$R1 3401
10 TraesCS2D01G066700 chr2B 45672569 45681766 9197 False 2553.666667 3703 86.702000 277 4422 3 chr2B.!!$F2 4145
11 TraesCS2D01G066700 chr2B 44432433 44435971 3538 True 2039.500000 2981 89.349500 174 4297 2 chr2B.!!$R2 4123

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
481 506 0.108585 TCCTTGACAACTGACCTGCC 59.891 55.0 0.00 0.00 0.00 4.85 F
1677 1729 0.037447 GGAATGCTCTCTATGGGGCC 59.963 60.0 0.00 0.00 0.00 5.80 F
1907 1959 0.324614 TATGTCCCAGCCACACTGTG 59.675 55.0 6.19 6.19 45.68 3.66 F
2876 2934 0.391661 AGTGCACTGAAGGGCATACG 60.392 55.0 20.97 0.00 42.75 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 2018 0.171231 GAGTGGCCAATTTCGGAAGC 59.829 55.0 7.24 0.00 0.0 3.86 R
3297 9253 0.248702 GACTCGAGCTGATCCGGTTC 60.249 60.0 13.61 2.73 0.0 3.62 R
3619 9575 0.383231 GCCACATCAGCAGCAATACC 59.617 55.0 0.00 0.00 0.0 2.73 R
4525 10525 0.032952 ACGTTCGCTTTCAGGTGCTA 59.967 50.0 0.00 0.00 0.0 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.946762 GCTTTGTGTCTGGTCGGC 59.053 61.111 0.00 0.00 0.00 5.54
18 19 2.954753 GCTTTGTGTCTGGTCGGCG 61.955 63.158 0.00 0.00 0.00 6.46
19 20 1.594293 CTTTGTGTCTGGTCGGCGT 60.594 57.895 6.85 0.00 0.00 5.68
20 21 0.319211 CTTTGTGTCTGGTCGGCGTA 60.319 55.000 6.85 0.00 0.00 4.42
21 22 0.319211 TTTGTGTCTGGTCGGCGTAG 60.319 55.000 6.85 4.48 0.00 3.51
22 23 1.457823 TTGTGTCTGGTCGGCGTAGT 61.458 55.000 6.85 0.00 0.00 2.73
23 24 1.443872 GTGTCTGGTCGGCGTAGTG 60.444 63.158 6.85 0.00 0.00 2.74
24 25 2.181021 GTCTGGTCGGCGTAGTGG 59.819 66.667 6.85 0.00 0.00 4.00
25 26 2.282674 TCTGGTCGGCGTAGTGGT 60.283 61.111 6.85 0.00 0.00 4.16
26 27 2.126071 CTGGTCGGCGTAGTGGTG 60.126 66.667 6.85 0.00 0.00 4.17
27 28 3.642778 CTGGTCGGCGTAGTGGTGG 62.643 68.421 6.85 0.00 0.00 4.61
34 35 3.687102 CGTAGTGGTGGCGGGTCA 61.687 66.667 0.00 0.00 0.00 4.02
35 36 2.987125 GTAGTGGTGGCGGGTCAT 59.013 61.111 0.00 0.00 0.00 3.06
36 37 1.153429 GTAGTGGTGGCGGGTCATC 60.153 63.158 0.00 0.00 0.00 2.92
37 38 1.305802 TAGTGGTGGCGGGTCATCT 60.306 57.895 0.00 0.00 0.00 2.90
38 39 1.613317 TAGTGGTGGCGGGTCATCTG 61.613 60.000 0.00 0.00 0.00 2.90
39 40 4.408821 TGGTGGCGGGTCATCTGC 62.409 66.667 0.00 0.00 46.78 4.26
44 45 4.521062 GCGGGTCATCTGCGCTCT 62.521 66.667 9.73 0.00 38.09 4.09
45 46 2.584418 CGGGTCATCTGCGCTCTG 60.584 66.667 9.73 3.31 0.00 3.35
46 47 2.581354 GGGTCATCTGCGCTCTGT 59.419 61.111 9.73 0.00 0.00 3.41
47 48 1.520342 GGGTCATCTGCGCTCTGTC 60.520 63.158 9.73 1.09 0.00 3.51
48 49 1.875813 GGTCATCTGCGCTCTGTCG 60.876 63.158 9.73 0.00 0.00 4.35
49 50 1.137614 GTCATCTGCGCTCTGTCGA 59.862 57.895 9.73 0.00 0.00 4.20
50 51 0.865218 GTCATCTGCGCTCTGTCGAG 60.865 60.000 9.73 0.00 40.35 4.04
58 59 2.259818 CTCTGTCGAGCTGCCGTT 59.740 61.111 0.00 0.00 0.00 4.44
59 60 2.049156 TCTGTCGAGCTGCCGTTG 60.049 61.111 0.00 3.44 0.00 4.10
60 61 2.356313 CTGTCGAGCTGCCGTTGT 60.356 61.111 0.00 0.00 0.00 3.32
61 62 1.956170 CTGTCGAGCTGCCGTTGTT 60.956 57.895 0.00 0.00 0.00 2.83
62 63 2.162921 CTGTCGAGCTGCCGTTGTTG 62.163 60.000 0.00 0.00 0.00 3.33
63 64 2.664851 TCGAGCTGCCGTTGTTGG 60.665 61.111 0.00 0.00 0.00 3.77
72 73 3.287482 CCGTTGTTGGCATTTGCTT 57.713 47.368 2.12 0.00 41.70 3.91
73 74 1.139163 CCGTTGTTGGCATTTGCTTC 58.861 50.000 2.12 0.00 41.70 3.86
74 75 1.269726 CCGTTGTTGGCATTTGCTTCT 60.270 47.619 2.12 0.00 41.70 2.85
75 76 2.472816 CGTTGTTGGCATTTGCTTCTT 58.527 42.857 2.12 0.00 41.70 2.52
76 77 2.472488 CGTTGTTGGCATTTGCTTCTTC 59.528 45.455 2.12 0.00 41.70 2.87
77 78 3.721035 GTTGTTGGCATTTGCTTCTTCT 58.279 40.909 2.12 0.00 41.70 2.85
78 79 4.122046 GTTGTTGGCATTTGCTTCTTCTT 58.878 39.130 2.12 0.00 41.70 2.52
79 80 3.981211 TGTTGGCATTTGCTTCTTCTTC 58.019 40.909 2.12 0.00 41.70 2.87
80 81 3.638160 TGTTGGCATTTGCTTCTTCTTCT 59.362 39.130 2.12 0.00 41.70 2.85
81 82 4.099881 TGTTGGCATTTGCTTCTTCTTCTT 59.900 37.500 2.12 0.00 41.70 2.52
82 83 4.942761 TGGCATTTGCTTCTTCTTCTTT 57.057 36.364 2.12 0.00 41.70 2.52
83 84 5.280654 TGGCATTTGCTTCTTCTTCTTTT 57.719 34.783 2.12 0.00 41.70 2.27
84 85 5.673514 TGGCATTTGCTTCTTCTTCTTTTT 58.326 33.333 2.12 0.00 41.70 1.94
85 86 5.754890 TGGCATTTGCTTCTTCTTCTTTTTC 59.245 36.000 2.12 0.00 41.70 2.29
86 87 5.987953 GGCATTTGCTTCTTCTTCTTTTTCT 59.012 36.000 2.12 0.00 41.70 2.52
87 88 6.481313 GGCATTTGCTTCTTCTTCTTTTTCTT 59.519 34.615 2.12 0.00 41.70 2.52
88 89 7.011763 GGCATTTGCTTCTTCTTCTTTTTCTTT 59.988 33.333 2.12 0.00 41.70 2.52
89 90 8.393366 GCATTTGCTTCTTCTTCTTTTTCTTTT 58.607 29.630 0.00 0.00 38.21 2.27
90 91 9.698617 CATTTGCTTCTTCTTCTTTTTCTTTTG 57.301 29.630 0.00 0.00 0.00 2.44
91 92 7.832503 TTGCTTCTTCTTCTTTTTCTTTTGG 57.167 32.000 0.00 0.00 0.00 3.28
92 93 6.340522 TGCTTCTTCTTCTTTTTCTTTTGGG 58.659 36.000 0.00 0.00 0.00 4.12
93 94 5.235186 GCTTCTTCTTCTTTTTCTTTTGGGC 59.765 40.000 0.00 0.00 0.00 5.36
94 95 6.544928 TTCTTCTTCTTTTTCTTTTGGGCT 57.455 33.333 0.00 0.00 0.00 5.19
95 96 6.544928 TCTTCTTCTTTTTCTTTTGGGCTT 57.455 33.333 0.00 0.00 0.00 4.35
96 97 6.340522 TCTTCTTCTTTTTCTTTTGGGCTTG 58.659 36.000 0.00 0.00 0.00 4.01
97 98 5.675684 TCTTCTTTTTCTTTTGGGCTTGT 57.324 34.783 0.00 0.00 0.00 3.16
98 99 6.048732 TCTTCTTTTTCTTTTGGGCTTGTT 57.951 33.333 0.00 0.00 0.00 2.83
99 100 5.874261 TCTTCTTTTTCTTTTGGGCTTGTTG 59.126 36.000 0.00 0.00 0.00 3.33
100 101 5.159273 TCTTTTTCTTTTGGGCTTGTTGT 57.841 34.783 0.00 0.00 0.00 3.32
101 102 4.934602 TCTTTTTCTTTTGGGCTTGTTGTG 59.065 37.500 0.00 0.00 0.00 3.33
102 103 3.971245 TTTCTTTTGGGCTTGTTGTGT 57.029 38.095 0.00 0.00 0.00 3.72
103 104 3.971245 TTCTTTTGGGCTTGTTGTGTT 57.029 38.095 0.00 0.00 0.00 3.32
104 105 3.244033 TCTTTTGGGCTTGTTGTGTTG 57.756 42.857 0.00 0.00 0.00 3.33
105 106 2.564947 TCTTTTGGGCTTGTTGTGTTGT 59.435 40.909 0.00 0.00 0.00 3.32
106 107 3.007398 TCTTTTGGGCTTGTTGTGTTGTT 59.993 39.130 0.00 0.00 0.00 2.83
107 108 2.663826 TTGGGCTTGTTGTGTTGTTC 57.336 45.000 0.00 0.00 0.00 3.18
108 109 0.453793 TGGGCTTGTTGTGTTGTTCG 59.546 50.000 0.00 0.00 0.00 3.95
109 110 0.869880 GGGCTTGTTGTGTTGTTCGC 60.870 55.000 0.00 0.00 0.00 4.70
110 111 0.869880 GGCTTGTTGTGTTGTTCGCC 60.870 55.000 0.00 0.00 0.00 5.54
111 112 0.869880 GCTTGTTGTGTTGTTCGCCC 60.870 55.000 0.00 0.00 0.00 6.13
112 113 0.248866 CTTGTTGTGTTGTTCGCCCC 60.249 55.000 0.00 0.00 0.00 5.80
113 114 0.965866 TTGTTGTGTTGTTCGCCCCA 60.966 50.000 0.00 0.00 0.00 4.96
114 115 1.358759 GTTGTGTTGTTCGCCCCAG 59.641 57.895 0.00 0.00 0.00 4.45
115 116 2.485795 TTGTGTTGTTCGCCCCAGC 61.486 57.895 0.00 0.00 0.00 4.85
126 127 2.919971 GCCCCAGCGATTCTGTATC 58.080 57.895 0.00 0.00 41.25 2.24
137 138 4.600012 GATTCTGTATCGGTGTTGGTTG 57.400 45.455 0.00 0.00 0.00 3.77
138 139 1.803334 TCTGTATCGGTGTTGGTTGC 58.197 50.000 0.00 0.00 0.00 4.17
139 140 1.346395 TCTGTATCGGTGTTGGTTGCT 59.654 47.619 0.00 0.00 0.00 3.91
140 141 2.151202 CTGTATCGGTGTTGGTTGCTT 58.849 47.619 0.00 0.00 0.00 3.91
141 142 2.552315 CTGTATCGGTGTTGGTTGCTTT 59.448 45.455 0.00 0.00 0.00 3.51
142 143 2.292016 TGTATCGGTGTTGGTTGCTTTG 59.708 45.455 0.00 0.00 0.00 2.77
143 144 0.673437 ATCGGTGTTGGTTGCTTTGG 59.327 50.000 0.00 0.00 0.00 3.28
144 145 0.394488 TCGGTGTTGGTTGCTTTGGA 60.394 50.000 0.00 0.00 0.00 3.53
145 146 0.457851 CGGTGTTGGTTGCTTTGGAA 59.542 50.000 0.00 0.00 0.00 3.53
146 147 1.068434 CGGTGTTGGTTGCTTTGGAAT 59.932 47.619 0.00 0.00 0.00 3.01
147 148 2.294791 CGGTGTTGGTTGCTTTGGAATA 59.705 45.455 0.00 0.00 0.00 1.75
148 149 3.649073 GGTGTTGGTTGCTTTGGAATAC 58.351 45.455 0.00 0.00 0.00 1.89
149 150 3.068873 GGTGTTGGTTGCTTTGGAATACA 59.931 43.478 0.00 0.00 0.00 2.29
150 151 4.442192 GGTGTTGGTTGCTTTGGAATACAA 60.442 41.667 0.00 0.00 37.28 2.41
151 152 5.112686 GTGTTGGTTGCTTTGGAATACAAA 58.887 37.500 0.00 0.00 46.34 2.83
159 160 2.122783 TTGGAATACAAAGCGGAGGG 57.877 50.000 0.00 0.00 35.79 4.30
160 161 1.281419 TGGAATACAAAGCGGAGGGA 58.719 50.000 0.00 0.00 0.00 4.20
161 162 1.631388 TGGAATACAAAGCGGAGGGAA 59.369 47.619 0.00 0.00 0.00 3.97
162 163 2.040545 TGGAATACAAAGCGGAGGGAAA 59.959 45.455 0.00 0.00 0.00 3.13
163 164 2.422479 GGAATACAAAGCGGAGGGAAAC 59.578 50.000 0.00 0.00 0.00 2.78
188 189 5.277634 CCTTTTTCGGTAAGTGAAACACGAT 60.278 40.000 0.00 0.00 41.43 3.73
210 214 1.204704 GCCCAGGTTCACAAATAAGCC 59.795 52.381 0.00 0.00 0.00 4.35
235 243 1.137282 GGACGATTCTCTTGGGAGGAC 59.863 57.143 0.00 0.00 39.86 3.85
267 275 2.922758 GCATGATAGATGTCCCGTCGAC 60.923 54.545 5.18 5.18 42.33 4.20
279 287 2.983358 CGTCGACGGCATATACTCG 58.017 57.895 29.70 0.00 35.37 4.18
281 289 1.720860 CGTCGACGGCATATACTCGTC 60.721 57.143 29.70 11.82 46.52 4.20
360 384 2.859165 TTCATGTCCGAGGAAGCTTT 57.141 45.000 0.00 0.00 0.00 3.51
373 397 5.338708 CGAGGAAGCTTTATGATGGGGATAT 60.339 44.000 0.00 0.00 0.00 1.63
374 398 6.127054 CGAGGAAGCTTTATGATGGGGATATA 60.127 42.308 0.00 0.00 0.00 0.86
375 399 7.419518 CGAGGAAGCTTTATGATGGGGATATAT 60.420 40.741 0.00 0.00 0.00 0.86
376 400 8.876332 AGGAAGCTTTATGATGGGGATATATA 57.124 34.615 0.00 0.00 0.00 0.86
382 406 7.229506 GCTTTATGATGGGGATATATAGGTTGC 59.770 40.741 0.00 0.00 0.00 4.17
400 424 4.641989 GGTTGCTGTGGATCATTGACTAAT 59.358 41.667 0.00 0.00 0.00 1.73
403 427 6.441093 TGCTGTGGATCATTGACTAATTTC 57.559 37.500 0.00 0.00 0.00 2.17
469 494 1.004745 TGCCCATTTCCTCTCCTTGAC 59.995 52.381 0.00 0.00 0.00 3.18
481 506 0.108585 TCCTTGACAACTGACCTGCC 59.891 55.000 0.00 0.00 0.00 4.85
482 507 0.179020 CCTTGACAACTGACCTGCCA 60.179 55.000 0.00 0.00 0.00 4.92
524 551 3.046968 TGTGCTTCGGCTTACAATACA 57.953 42.857 0.00 0.00 42.37 2.29
566 593 8.397148 CAACTGTAACATATGTCATGTGCAATA 58.603 33.333 9.23 0.00 31.80 1.90
604 631 1.476488 GTTACTTGGATGGCGGCAAAT 59.524 47.619 18.31 0.00 0.00 2.32
795 835 4.016444 ACAAGTTTCTTTTGTGCTCAGGA 58.984 39.130 0.00 0.00 37.38 3.86
823 863 0.835941 ATCATCTGGGGAGTGTCTGC 59.164 55.000 0.00 0.00 0.00 4.26
827 867 4.631740 TGGGGAGTGTCTGCGGGA 62.632 66.667 0.00 0.00 0.00 5.14
831 871 1.235281 GGGAGTGTCTGCGGGAAAAC 61.235 60.000 0.00 0.00 0.00 2.43
832 872 1.235281 GGAGTGTCTGCGGGAAAACC 61.235 60.000 0.00 0.00 0.00 3.27
836 876 1.135333 GTGTCTGCGGGAAAACCAAAA 59.865 47.619 0.00 0.00 40.22 2.44
837 877 1.825474 TGTCTGCGGGAAAACCAAAAA 59.175 42.857 0.00 0.00 40.22 1.94
859 899 1.227674 GATCATCTGGGGCGTGACC 60.228 63.158 0.00 0.00 37.93 4.02
933 983 2.438392 CTCCCCTACCCTTCCAACATAC 59.562 54.545 0.00 0.00 0.00 2.39
934 984 1.140252 CCCCTACCCTTCCAACATACG 59.860 57.143 0.00 0.00 0.00 3.06
935 985 1.835531 CCCTACCCTTCCAACATACGT 59.164 52.381 0.00 0.00 0.00 3.57
936 986 3.033184 CCCTACCCTTCCAACATACGTA 58.967 50.000 0.00 0.00 0.00 3.57
976 1028 3.446442 AGCATTTGACACCCAATCTCT 57.554 42.857 0.00 0.00 34.23 3.10
977 1029 3.087031 AGCATTTGACACCCAATCTCTG 58.913 45.455 0.00 0.00 34.23 3.35
978 1030 3.084039 GCATTTGACACCCAATCTCTGA 58.916 45.455 0.00 0.00 34.23 3.27
980 1032 4.159135 GCATTTGACACCCAATCTCTGATT 59.841 41.667 0.00 0.00 34.23 2.57
982 1034 4.371624 TTGACACCCAATCTCTGATTGT 57.628 40.909 16.08 1.96 0.00 2.71
983 1035 4.371624 TGACACCCAATCTCTGATTGTT 57.628 40.909 16.08 3.63 0.00 2.83
984 1036 4.326826 TGACACCCAATCTCTGATTGTTC 58.673 43.478 16.08 9.18 0.00 3.18
985 1037 3.690460 ACACCCAATCTCTGATTGTTCC 58.310 45.455 16.08 0.00 0.00 3.62
986 1038 3.331889 ACACCCAATCTCTGATTGTTCCT 59.668 43.478 16.08 0.00 0.00 3.36
1031 1083 0.526211 GTTTTCGGCACCCAATCTCC 59.474 55.000 0.00 0.00 0.00 3.71
1038 1090 1.134220 GGCACCCAATCTCCGATTGTA 60.134 52.381 13.64 0.00 0.00 2.41
1101 1153 5.473162 TGTATTTCTGTCCTCCAACACAATG 59.527 40.000 0.00 0.00 0.00 2.82
1180 1232 2.025605 TGCTTCAAATCTGGCATCTCCT 60.026 45.455 0.00 0.00 35.26 3.69
1181 1233 3.022406 GCTTCAAATCTGGCATCTCCTT 58.978 45.455 0.00 0.00 35.26 3.36
1188 1240 1.541118 TGGCATCTCCTTGGACCCA 60.541 57.895 0.00 0.00 35.26 4.51
1192 1244 1.229951 ATCTCCTTGGACCCAGCCA 60.230 57.895 0.00 0.00 35.78 4.75
1356 1408 5.190726 AGCAGGCCTTAGTTCTCTAAAGAAT 59.809 40.000 0.00 0.00 43.26 2.40
1427 1479 4.397348 GCTTCGGAGCCTCCAAAA 57.603 55.556 12.13 3.49 43.29 2.44
1440 1492 2.232208 CCTCCAAAACCTGAATCTTGCC 59.768 50.000 0.00 0.00 0.00 4.52
1486 1538 4.079385 TCCCTCTGTCATTAGGTACAGCTA 60.079 45.833 0.00 0.00 42.31 3.32
1576 1628 9.029243 CAAATAGTTCATCACTCAGTGAGATAC 57.971 37.037 26.86 10.26 46.04 2.24
1581 1633 5.514169 TCATCACTCAGTGAGATACTCCTT 58.486 41.667 26.86 0.00 46.04 3.36
1626 1678 5.127682 GGTGATCCCAGCTAATTTGTTCAAT 59.872 40.000 0.00 0.00 37.77 2.57
1643 1695 5.298026 TGTTCAATTCATCCAAACTTCGTCA 59.702 36.000 0.00 0.00 0.00 4.35
1670 1722 3.388552 TCTCCAGTGGAATGCTCTCTA 57.611 47.619 14.17 0.00 0.00 2.43
1677 1729 0.037447 GGAATGCTCTCTATGGGGCC 59.963 60.000 0.00 0.00 0.00 5.80
1722 1774 2.159254 AGCTCTGCAGTTTCTCGATCTC 60.159 50.000 14.67 0.00 0.00 2.75
1734 1786 4.826274 TCTCGATCTCACAGGGAATTTT 57.174 40.909 0.00 0.00 0.00 1.82
1739 1791 6.707290 TCGATCTCACAGGGAATTTTCTTTA 58.293 36.000 0.00 0.00 0.00 1.85
1816 1868 7.394016 TCTAGCACAAAACATCTTATCAGGAA 58.606 34.615 0.00 0.00 0.00 3.36
1849 1901 5.428184 AACTTTGGGTCAAATTCCAAACA 57.572 34.783 5.24 0.00 45.01 2.83
1907 1959 0.324614 TATGTCCCAGCCACACTGTG 59.675 55.000 6.19 6.19 45.68 3.66
1932 1984 3.982475 TGTGTCATCACTCACACTCTTC 58.018 45.455 4.02 0.00 42.93 2.87
1966 2018 5.882557 AGCAACAGGTTTATTGGACAGATAG 59.117 40.000 0.00 0.00 0.00 2.08
2031 2083 1.215382 GGGAGGCAACCAATTTCGC 59.785 57.895 3.41 0.00 37.17 4.70
2066 2118 4.999950 AGATTCTCTGACCAACATGTCAAC 59.000 41.667 0.00 0.00 44.19 3.18
2224 2276 4.036262 TCACCAATTGCACTCAGTTGTTAC 59.964 41.667 0.00 0.00 37.98 2.50
2233 2285 6.106003 TGCACTCAGTTGTTACGATTATCAT 58.894 36.000 0.00 0.00 0.00 2.45
2289 2341 2.421424 GACAGTAGGCAGCCTTTCAATG 59.579 50.000 22.26 14.10 34.61 2.82
2530 2582 2.805099 CTCGGGCAGCTTTATCTTGATC 59.195 50.000 0.00 0.00 0.00 2.92
2580 2632 5.945784 AGCAACTATAGGACAATGCAAAAGA 59.054 36.000 4.43 0.00 36.30 2.52
2599 2657 7.465245 GCAAAAGACTAGCTATGCTGAACTTAG 60.465 40.741 7.37 0.00 40.10 2.18
2611 2669 3.561725 GCTGAACTTAGCAGTCAACAACT 59.438 43.478 0.00 0.00 43.17 3.16
2633 2691 5.192522 ACTTTGATGGATCCATACCAAGAGT 59.807 40.000 29.85 25.59 40.93 3.24
2876 2934 0.391661 AGTGCACTGAAGGGCATACG 60.392 55.000 20.97 0.00 42.75 3.06
3401 9357 2.027192 TCCATCTTAGCGAGCAAGGTTT 60.027 45.455 0.00 0.00 0.00 3.27
3432 9388 1.214367 TTTTCACCGAGTGCGAAGTC 58.786 50.000 0.00 0.00 40.82 3.01
3619 9575 0.179000 AAGCTTGGGTCAGCGGATAG 59.821 55.000 0.00 0.00 45.24 2.08
3771 9727 0.034896 GGTCCGCCAAGTTTCTCTCA 59.965 55.000 0.00 0.00 34.09 3.27
3899 9862 4.159506 TCAACTCTGACCCCTTTTGTTTTG 59.840 41.667 0.00 0.00 0.00 2.44
4074 10037 3.194062 GCTCTCAGCCTTCACAAGTATC 58.806 50.000 0.00 0.00 34.48 2.24
4098 10061 1.395826 CCTAGCCTTCCCCGACAGAG 61.396 65.000 0.00 0.00 0.00 3.35
4287 10250 2.426522 TCAAAGAGGCATTTGTCGAGG 58.573 47.619 12.92 0.00 40.36 4.63
4389 10371 9.881529 GTTACTACACTACTCTGATGCTTATAC 57.118 37.037 0.00 0.00 0.00 1.47
4499 10498 2.094894 CAGCGGTGCAGATCTTACTTTG 59.905 50.000 0.00 0.00 0.00 2.77
4505 10504 5.812642 CGGTGCAGATCTTACTTTGTATCTT 59.187 40.000 0.00 0.00 0.00 2.40
4507 10506 7.653713 CGGTGCAGATCTTACTTTGTATCTTAT 59.346 37.037 0.00 0.00 0.00 1.73
4508 10507 8.768955 GGTGCAGATCTTACTTTGTATCTTATG 58.231 37.037 0.00 0.00 0.00 1.90
4519 10518 8.034058 ACTTTGTATCTTATGTTGAAGTGAGC 57.966 34.615 0.00 0.00 0.00 4.26
4520 10519 7.661437 ACTTTGTATCTTATGTTGAAGTGAGCA 59.339 33.333 0.00 0.00 0.00 4.26
4525 10525 9.846248 GTATCTTATGTTGAAGTGAGCATTTTT 57.154 29.630 0.00 0.00 0.00 1.94
4542 10542 3.619233 TTTTAGCACCTGAAAGCGAAC 57.381 42.857 0.00 0.00 35.48 3.95
4546 10546 1.772063 GCACCTGAAAGCGAACGTGT 61.772 55.000 0.00 0.00 0.00 4.49
4555 10565 4.789119 TGAAAGCGAACGTGTAAAACTTTG 59.211 37.500 0.00 0.00 0.00 2.77
4569 10579 6.584563 TGTAAAACTTTGTTTCACTGAACTGC 59.415 34.615 0.00 0.00 0.00 4.40
4595 10605 4.590222 AGGTGCATTTTTCCTGTCTGAAAT 59.410 37.500 0.00 0.00 34.41 2.17
4603 10613 8.653338 CATTTTTCCTGTCTGAAATGCTATTTG 58.347 33.333 0.00 0.00 34.41 2.32
4611 10621 5.358160 GTCTGAAATGCTATTTGGTTAGGCT 59.642 40.000 0.00 0.00 0.00 4.58
4622 10632 3.569194 TGGTTAGGCTTTCTTCACACA 57.431 42.857 0.00 0.00 0.00 3.72
4624 10634 4.274147 TGGTTAGGCTTTCTTCACACAAA 58.726 39.130 0.00 0.00 0.00 2.83
4627 10637 6.127196 TGGTTAGGCTTTCTTCACACAAAATT 60.127 34.615 0.00 0.00 0.00 1.82
4628 10638 7.068839 TGGTTAGGCTTTCTTCACACAAAATTA 59.931 33.333 0.00 0.00 0.00 1.40
4629 10639 8.088365 GGTTAGGCTTTCTTCACACAAAATTAT 58.912 33.333 0.00 0.00 0.00 1.28
4632 10642 7.315890 AGGCTTTCTTCACACAAAATTATAGC 58.684 34.615 0.00 0.00 0.00 2.97
4633 10643 7.177392 AGGCTTTCTTCACACAAAATTATAGCT 59.823 33.333 0.00 0.00 0.00 3.32
4634 10644 7.274250 GGCTTTCTTCACACAAAATTATAGCTG 59.726 37.037 0.00 0.00 0.00 4.24
4635 10645 7.809806 GCTTTCTTCACACAAAATTATAGCTGT 59.190 33.333 0.00 0.00 0.00 4.40
4639 10649 9.665719 TCTTCACACAAAATTATAGCTGTATCA 57.334 29.630 0.00 0.00 0.00 2.15
4640 10650 9.708222 CTTCACACAAAATTATAGCTGTATCAC 57.292 33.333 0.00 0.00 0.00 3.06
4641 10651 9.448438 TTCACACAAAATTATAGCTGTATCACT 57.552 29.630 0.00 0.00 0.00 3.41
4642 10652 9.098355 TCACACAAAATTATAGCTGTATCACTC 57.902 33.333 0.00 0.00 0.00 3.51
4643 10653 8.882736 CACACAAAATTATAGCTGTATCACTCA 58.117 33.333 0.00 0.00 0.00 3.41
4644 10654 8.883731 ACACAAAATTATAGCTGTATCACTCAC 58.116 33.333 0.00 0.00 0.00 3.51
4645 10655 8.882736 CACAAAATTATAGCTGTATCACTCACA 58.117 33.333 0.00 0.00 0.00 3.58
4646 10656 9.102757 ACAAAATTATAGCTGTATCACTCACAG 57.897 33.333 0.00 0.00 45.08 3.66
4647 10657 9.317936 CAAAATTATAGCTGTATCACTCACAGA 57.682 33.333 6.67 0.00 45.10 3.41
4648 10658 9.890629 AAAATTATAGCTGTATCACTCACAGAA 57.109 29.630 6.67 0.00 45.10 3.02
4655 10665 8.243961 AGCTGTATCACTCACAGAATATAACT 57.756 34.615 6.67 0.00 45.10 2.24
4656 10666 8.140628 AGCTGTATCACTCACAGAATATAACTG 58.859 37.037 6.67 7.88 45.10 3.16
4657 10667 7.923344 GCTGTATCACTCACAGAATATAACTGT 59.077 37.037 6.67 8.93 45.10 3.55
4662 10672 9.809096 ATCACTCACAGAATATAACTGTAACAG 57.191 33.333 12.89 11.59 45.15 3.16
4693 10703 9.793259 AATTATGTATCTGAAATTATCCACCGT 57.207 29.630 0.00 0.00 0.00 4.83
4694 10704 9.793259 ATTATGTATCTGAAATTATCCACCGTT 57.207 29.630 0.00 0.00 0.00 4.44
4697 10707 8.601845 TGTATCTGAAATTATCCACCGTTATG 57.398 34.615 0.00 0.00 0.00 1.90
4698 10708 6.560253 ATCTGAAATTATCCACCGTTATGC 57.440 37.500 0.00 0.00 0.00 3.14
4699 10709 4.819630 TCTGAAATTATCCACCGTTATGCC 59.180 41.667 0.00 0.00 0.00 4.40
4700 10710 4.787551 TGAAATTATCCACCGTTATGCCT 58.212 39.130 0.00 0.00 0.00 4.75
4701 10711 5.931294 TGAAATTATCCACCGTTATGCCTA 58.069 37.500 0.00 0.00 0.00 3.93
4702 10712 6.539173 TGAAATTATCCACCGTTATGCCTAT 58.461 36.000 0.00 0.00 0.00 2.57
4703 10713 6.429692 TGAAATTATCCACCGTTATGCCTATG 59.570 38.462 0.00 0.00 0.00 2.23
4704 10714 2.185004 ATCCACCGTTATGCCTATGC 57.815 50.000 0.00 0.00 38.26 3.14
4713 10723 3.425737 TGCCTATGCACCCACCAT 58.574 55.556 0.00 0.00 44.23 3.55
4714 10724 2.626510 TGCCTATGCACCCACCATA 58.373 52.632 0.00 0.00 44.23 2.74
4715 10725 0.922626 TGCCTATGCACCCACCATAA 59.077 50.000 0.00 0.00 44.23 1.90
4716 10726 1.498576 TGCCTATGCACCCACCATAAT 59.501 47.619 0.00 0.00 44.23 1.28
4717 10727 2.162681 GCCTATGCACCCACCATAATC 58.837 52.381 0.00 0.00 37.47 1.75
4718 10728 2.488891 GCCTATGCACCCACCATAATCA 60.489 50.000 0.00 0.00 37.47 2.57
4719 10729 3.415212 CCTATGCACCCACCATAATCAG 58.585 50.000 0.00 0.00 0.00 2.90
4720 10730 1.696063 ATGCACCCACCATAATCAGC 58.304 50.000 0.00 0.00 0.00 4.26
4721 10731 0.747644 TGCACCCACCATAATCAGCG 60.748 55.000 0.00 0.00 0.00 5.18
4722 10732 1.447317 GCACCCACCATAATCAGCGG 61.447 60.000 0.00 0.00 0.00 5.52
4723 10733 0.107214 CACCCACCATAATCAGCGGT 60.107 55.000 0.00 0.00 0.00 5.68
4726 10736 2.779282 CACCATAATCAGCGGTGCA 58.221 52.632 10.38 0.00 43.43 4.57
4727 10737 0.659427 CACCATAATCAGCGGTGCAG 59.341 55.000 10.38 0.00 43.43 4.41
4728 10738 0.541392 ACCATAATCAGCGGTGCAGA 59.459 50.000 10.38 0.00 0.00 4.26
4729 10739 1.141657 ACCATAATCAGCGGTGCAGAT 59.858 47.619 10.38 0.00 36.37 2.90
4730 10740 1.802960 CCATAATCAGCGGTGCAGATC 59.197 52.381 10.38 0.00 33.80 2.75
4731 10741 2.549563 CCATAATCAGCGGTGCAGATCT 60.550 50.000 10.38 0.00 33.80 2.75
4732 10742 2.988010 TAATCAGCGGTGCAGATCTT 57.012 45.000 10.38 0.00 33.80 2.40
4733 10743 2.988010 AATCAGCGGTGCAGATCTTA 57.012 45.000 10.38 0.00 33.80 2.10
4734 10744 2.231215 ATCAGCGGTGCAGATCTTAC 57.769 50.000 10.38 0.00 28.88 2.34
4735 10745 1.186200 TCAGCGGTGCAGATCTTACT 58.814 50.000 10.38 0.00 0.00 2.24
4736 10746 1.550524 TCAGCGGTGCAGATCTTACTT 59.449 47.619 10.38 0.00 0.00 2.24
4737 10747 2.028112 TCAGCGGTGCAGATCTTACTTT 60.028 45.455 10.38 0.00 0.00 2.66
4738 10748 2.094894 CAGCGGTGCAGATCTTACTTTG 59.905 50.000 0.00 0.00 0.00 2.77
4739 10749 2.076863 GCGGTGCAGATCTTACTTTGT 58.923 47.619 0.00 0.00 0.00 2.83
4740 10750 3.056107 AGCGGTGCAGATCTTACTTTGTA 60.056 43.478 0.00 0.00 0.00 2.41
4741 10751 3.307242 GCGGTGCAGATCTTACTTTGTAG 59.693 47.826 0.00 0.00 0.00 2.74
4742 10752 3.307242 CGGTGCAGATCTTACTTTGTAGC 59.693 47.826 0.00 0.00 0.00 3.58
4743 10753 4.508662 GGTGCAGATCTTACTTTGTAGCT 58.491 43.478 0.00 0.00 0.00 3.32
4744 10754 4.568760 GGTGCAGATCTTACTTTGTAGCTC 59.431 45.833 0.00 0.00 0.00 4.09
4745 10755 5.171476 GTGCAGATCTTACTTTGTAGCTCA 58.829 41.667 0.00 0.00 0.00 4.26
4746 10756 5.814705 GTGCAGATCTTACTTTGTAGCTCAT 59.185 40.000 0.00 0.00 0.00 2.90
4747 10757 6.980978 GTGCAGATCTTACTTTGTAGCTCATA 59.019 38.462 0.00 0.00 0.00 2.15
4748 10758 7.655328 GTGCAGATCTTACTTTGTAGCTCATAT 59.345 37.037 0.00 0.00 0.00 1.78
4749 10759 8.206867 TGCAGATCTTACTTTGTAGCTCATATT 58.793 33.333 0.00 0.00 0.00 1.28
4750 10760 8.494347 GCAGATCTTACTTTGTAGCTCATATTG 58.506 37.037 0.00 0.00 0.00 1.90
4751 10761 9.755804 CAGATCTTACTTTGTAGCTCATATTGA 57.244 33.333 0.00 0.00 0.00 2.57
4755 10765 9.371136 TCTTACTTTGTAGCTCATATTGAAGTG 57.629 33.333 0.00 0.00 0.00 3.16
4756 10766 9.371136 CTTACTTTGTAGCTCATATTGAAGTGA 57.629 33.333 0.00 0.00 0.00 3.41
4757 10767 7.840342 ACTTTGTAGCTCATATTGAAGTGAG 57.160 36.000 0.00 6.13 43.62 3.51
4758 10768 7.390027 ACTTTGTAGCTCATATTGAAGTGAGT 58.610 34.615 10.69 3.11 42.91 3.41
4759 10769 8.531982 ACTTTGTAGCTCATATTGAAGTGAGTA 58.468 33.333 10.69 2.42 42.91 2.59
4760 10770 8.703604 TTTGTAGCTCATATTGAAGTGAGTAC 57.296 34.615 10.69 11.16 42.91 2.73
4761 10771 7.646548 TGTAGCTCATATTGAAGTGAGTACT 57.353 36.000 0.00 0.00 42.91 2.73
4763 10773 8.531982 TGTAGCTCATATTGAAGTGAGTACTTT 58.468 33.333 0.00 0.00 46.79 2.66
4766 10776 7.708752 AGCTCATATTGAAGTGAGTACTTTAGC 59.291 37.037 0.00 0.00 46.79 3.09
4767 10777 7.306283 GCTCATATTGAAGTGAGTACTTTAGCG 60.306 40.741 0.00 0.00 46.79 4.26
4768 10778 7.544622 TCATATTGAAGTGAGTACTTTAGCGT 58.455 34.615 0.00 0.00 46.79 5.07
4769 10779 7.701078 TCATATTGAAGTGAGTACTTTAGCGTC 59.299 37.037 0.00 0.00 46.79 5.19
4770 10780 4.170292 TGAAGTGAGTACTTTAGCGTCC 57.830 45.455 0.00 0.00 46.79 4.79
4771 10781 2.915738 AGTGAGTACTTTAGCGTCCG 57.084 50.000 0.00 0.00 31.66 4.79
4772 10782 2.430465 AGTGAGTACTTTAGCGTCCGA 58.570 47.619 0.00 0.00 31.66 4.55
4773 10783 2.816087 AGTGAGTACTTTAGCGTCCGAA 59.184 45.455 0.00 0.00 31.66 4.30
4774 10784 3.254166 AGTGAGTACTTTAGCGTCCGAAA 59.746 43.478 0.00 0.00 31.66 3.46
4775 10785 3.607209 GTGAGTACTTTAGCGTCCGAAAG 59.393 47.826 0.00 0.00 38.94 2.62
4776 10786 2.597748 GAGTACTTTAGCGTCCGAAAGC 59.402 50.000 0.00 0.00 37.23 3.51
4777 10787 2.029649 AGTACTTTAGCGTCCGAAAGCA 60.030 45.455 0.00 0.00 37.23 3.91
4778 10788 1.429463 ACTTTAGCGTCCGAAAGCAG 58.571 50.000 0.00 0.00 37.23 4.24
4779 10789 0.095417 CTTTAGCGTCCGAAAGCAGC 59.905 55.000 0.00 0.00 35.48 5.25
4780 10790 1.623081 TTTAGCGTCCGAAAGCAGCG 61.623 55.000 0.00 0.00 35.48 5.18
4781 10791 2.480853 TTAGCGTCCGAAAGCAGCGA 62.481 55.000 0.00 0.00 35.48 4.93
4782 10792 2.480853 TAGCGTCCGAAAGCAGCGAA 62.481 55.000 0.00 0.00 35.48 4.70
4783 10793 2.772189 CGTCCGAAAGCAGCGAAG 59.228 61.111 0.00 0.00 0.00 3.79
4784 10794 2.730672 CGTCCGAAAGCAGCGAAGG 61.731 63.158 0.00 0.00 0.00 3.46
4785 10795 1.668151 GTCCGAAAGCAGCGAAGGT 60.668 57.895 0.00 0.00 41.48 3.50
4794 10804 3.377759 AGCGAAGGTGCGAGCTCT 61.378 61.111 12.85 0.00 40.67 4.09
4795 10805 2.433318 GCGAAGGTGCGAGCTCTT 60.433 61.111 12.85 0.00 0.00 2.85
4796 10806 2.734673 GCGAAGGTGCGAGCTCTTG 61.735 63.158 12.85 0.00 0.00 3.02
4797 10807 2.734673 CGAAGGTGCGAGCTCTTGC 61.735 63.158 12.85 9.46 40.38 4.01
4798 10808 1.669115 GAAGGTGCGAGCTCTTGCA 60.669 57.895 12.85 12.21 46.95 4.08
4803 10813 2.706636 TGCGAGCTCTTGCAAAACT 58.293 47.368 13.13 0.00 46.20 2.66
4804 10814 0.588252 TGCGAGCTCTTGCAAAACTC 59.412 50.000 13.13 6.77 46.20 3.01
4805 10815 0.871057 GCGAGCTCTTGCAAAACTCT 59.129 50.000 12.85 5.88 42.74 3.24
4806 10816 1.399471 GCGAGCTCTTGCAAAACTCTG 60.399 52.381 12.85 12.41 42.74 3.35
4807 10817 1.869767 CGAGCTCTTGCAAAACTCTGT 59.130 47.619 12.85 0.00 42.74 3.41
4808 10818 2.289002 CGAGCTCTTGCAAAACTCTGTT 59.711 45.455 12.85 0.00 42.74 3.16
4809 10819 3.242870 CGAGCTCTTGCAAAACTCTGTTT 60.243 43.478 12.85 0.00 42.74 2.83
4810 10820 4.286101 GAGCTCTTGCAAAACTCTGTTTC 58.714 43.478 6.43 0.00 42.74 2.78
4811 10821 3.696051 AGCTCTTGCAAAACTCTGTTTCA 59.304 39.130 0.00 0.00 42.74 2.69
4812 10822 3.793492 GCTCTTGCAAAACTCTGTTTCAC 59.207 43.478 0.00 0.00 39.41 3.18
4813 10823 4.439289 GCTCTTGCAAAACTCTGTTTCACT 60.439 41.667 0.00 0.00 39.41 3.41
4814 10824 4.985413 TCTTGCAAAACTCTGTTTCACTG 58.015 39.130 0.00 0.00 0.00 3.66
4815 10825 4.699735 TCTTGCAAAACTCTGTTTCACTGA 59.300 37.500 0.00 0.00 0.00 3.41
4816 10826 5.182950 TCTTGCAAAACTCTGTTTCACTGAA 59.817 36.000 0.00 0.00 0.00 3.02
4817 10827 4.732784 TGCAAAACTCTGTTTCACTGAAC 58.267 39.130 0.00 0.00 0.00 3.18
4818 10828 4.458989 TGCAAAACTCTGTTTCACTGAACT 59.541 37.500 0.00 0.00 0.00 3.01
4819 10829 4.795278 GCAAAACTCTGTTTCACTGAACTG 59.205 41.667 0.00 0.00 0.00 3.16
4820 10830 5.619981 GCAAAACTCTGTTTCACTGAACTGT 60.620 40.000 0.00 0.00 32.37 3.55
4821 10831 6.403200 GCAAAACTCTGTTTCACTGAACTGTA 60.403 38.462 0.00 0.00 32.37 2.74
4822 10832 6.910536 AAACTCTGTTTCACTGAACTGTAG 57.089 37.500 0.00 0.00 32.37 2.74
4823 10833 5.854010 ACTCTGTTTCACTGAACTGTAGA 57.146 39.130 0.00 0.00 32.37 2.59
4824 10834 5.837437 ACTCTGTTTCACTGAACTGTAGAG 58.163 41.667 13.80 13.80 35.22 2.43
4825 10835 5.201713 TCTGTTTCACTGAACTGTAGAGG 57.798 43.478 0.00 0.00 32.37 3.69
4826 10836 4.649674 TCTGTTTCACTGAACTGTAGAGGT 59.350 41.667 0.00 0.00 32.37 3.85
4827 10837 4.693283 TGTTTCACTGAACTGTAGAGGTG 58.307 43.478 0.00 0.00 0.00 4.00
4828 10838 3.386768 TTCACTGAACTGTAGAGGTGC 57.613 47.619 0.00 0.00 0.00 5.01
4829 10839 2.316108 TCACTGAACTGTAGAGGTGCA 58.684 47.619 0.00 0.00 0.00 4.57
4830 10840 2.899900 TCACTGAACTGTAGAGGTGCAT 59.100 45.455 0.00 0.00 0.00 3.96
4831 10841 3.324846 TCACTGAACTGTAGAGGTGCATT 59.675 43.478 0.00 0.00 0.00 3.56
4832 10842 4.067896 CACTGAACTGTAGAGGTGCATTT 58.932 43.478 0.00 0.00 0.00 2.32
4833 10843 4.516698 CACTGAACTGTAGAGGTGCATTTT 59.483 41.667 0.00 0.00 0.00 1.82
4834 10844 4.757149 ACTGAACTGTAGAGGTGCATTTTC 59.243 41.667 0.00 0.00 0.00 2.29
4835 10845 4.072131 TGAACTGTAGAGGTGCATTTTCC 58.928 43.478 0.00 0.00 0.00 3.13
4836 10846 4.202461 TGAACTGTAGAGGTGCATTTTCCT 60.202 41.667 0.00 0.00 36.70 3.36
4837 10847 3.679389 ACTGTAGAGGTGCATTTTCCTG 58.321 45.455 0.00 0.00 33.83 3.86
4838 10848 3.073062 ACTGTAGAGGTGCATTTTCCTGT 59.927 43.478 0.00 0.00 33.83 4.00
4839 10849 3.674997 TGTAGAGGTGCATTTTCCTGTC 58.325 45.455 0.00 0.00 33.83 3.51
4840 10850 3.327757 TGTAGAGGTGCATTTTCCTGTCT 59.672 43.478 0.00 0.00 33.83 3.41
4841 10851 2.787994 AGAGGTGCATTTTCCTGTCTG 58.212 47.619 0.00 0.00 33.83 3.51
4842 10852 2.373169 AGAGGTGCATTTTCCTGTCTGA 59.627 45.455 0.00 0.00 33.83 3.27
4843 10853 3.149196 GAGGTGCATTTTCCTGTCTGAA 58.851 45.455 0.00 0.00 33.83 3.02
4844 10854 3.152341 AGGTGCATTTTCCTGTCTGAAG 58.848 45.455 0.00 0.00 32.29 3.02
4845 10855 2.887152 GGTGCATTTTCCTGTCTGAAGT 59.113 45.455 0.00 0.00 0.00 3.01
4846 10856 3.304928 GGTGCATTTTCCTGTCTGAAGTG 60.305 47.826 0.00 0.00 0.00 3.16
4847 10857 2.294233 TGCATTTTCCTGTCTGAAGTGC 59.706 45.455 0.00 0.00 37.79 4.40
4848 10858 2.555757 GCATTTTCCTGTCTGAAGTGCT 59.444 45.455 0.00 0.00 36.04 4.40
4849 10859 3.753272 GCATTTTCCTGTCTGAAGTGCTA 59.247 43.478 0.00 0.00 36.04 3.49
4850 10860 4.397417 GCATTTTCCTGTCTGAAGTGCTAT 59.603 41.667 0.00 0.00 36.04 2.97
4851 10861 5.105997 GCATTTTCCTGTCTGAAGTGCTATT 60.106 40.000 0.00 0.00 36.04 1.73
4852 10862 6.571150 GCATTTTCCTGTCTGAAGTGCTATTT 60.571 38.462 0.00 0.00 36.04 1.40
4853 10863 6.959639 TTTTCCTGTCTGAAGTGCTATTTT 57.040 33.333 0.00 0.00 0.00 1.82
4854 10864 5.947228 TTCCTGTCTGAAGTGCTATTTTG 57.053 39.130 0.00 0.00 0.00 2.44
4855 10865 4.973168 TCCTGTCTGAAGTGCTATTTTGT 58.027 39.130 0.00 0.00 0.00 2.83
4856 10866 5.376625 TCCTGTCTGAAGTGCTATTTTGTT 58.623 37.500 0.00 0.00 0.00 2.83
4857 10867 6.530120 TCCTGTCTGAAGTGCTATTTTGTTA 58.470 36.000 0.00 0.00 0.00 2.41
4858 10868 6.650807 TCCTGTCTGAAGTGCTATTTTGTTAG 59.349 38.462 0.00 0.00 0.00 2.34
4859 10869 6.650807 CCTGTCTGAAGTGCTATTTTGTTAGA 59.349 38.462 0.00 0.00 0.00 2.10
4860 10870 7.360438 CCTGTCTGAAGTGCTATTTTGTTAGAC 60.360 40.741 0.00 0.00 33.37 2.59
4861 10871 6.989759 TGTCTGAAGTGCTATTTTGTTAGACA 59.010 34.615 0.00 0.00 38.63 3.41
4862 10872 7.661437 TGTCTGAAGTGCTATTTTGTTAGACAT 59.339 33.333 0.00 0.00 36.77 3.06
4863 10873 8.507249 GTCTGAAGTGCTATTTTGTTAGACATT 58.493 33.333 0.00 0.00 33.09 2.71
4864 10874 8.721478 TCTGAAGTGCTATTTTGTTAGACATTC 58.279 33.333 0.00 0.00 0.00 2.67
4865 10875 7.816640 TGAAGTGCTATTTTGTTAGACATTCC 58.183 34.615 0.00 0.00 0.00 3.01
4866 10876 7.665559 TGAAGTGCTATTTTGTTAGACATTCCT 59.334 33.333 0.00 0.00 0.00 3.36
4867 10877 7.617041 AGTGCTATTTTGTTAGACATTCCTC 57.383 36.000 0.00 0.00 0.00 3.71
4868 10878 6.313905 AGTGCTATTTTGTTAGACATTCCTCG 59.686 38.462 0.00 0.00 0.00 4.63
4869 10879 5.064707 TGCTATTTTGTTAGACATTCCTCGC 59.935 40.000 0.00 0.00 0.00 5.03
4870 10880 4.600012 ATTTTGTTAGACATTCCTCGCG 57.400 40.909 0.00 0.00 0.00 5.87
4871 10881 1.355971 TTGTTAGACATTCCTCGCGC 58.644 50.000 0.00 0.00 0.00 6.86
4872 10882 0.530744 TGTTAGACATTCCTCGCGCT 59.469 50.000 5.56 0.00 0.00 5.92
4873 10883 1.746787 TGTTAGACATTCCTCGCGCTA 59.253 47.619 5.56 0.00 0.00 4.26
4874 10884 2.361119 TGTTAGACATTCCTCGCGCTAT 59.639 45.455 5.56 0.00 0.00 2.97
4875 10885 3.566742 TGTTAGACATTCCTCGCGCTATA 59.433 43.478 5.56 0.00 0.00 1.31
4876 10886 2.708386 AGACATTCCTCGCGCTATAC 57.292 50.000 5.56 0.00 0.00 1.47
4905 10915 6.992123 GTCAATTTTGGTTCTTTCCTTGGATT 59.008 34.615 0.00 0.00 0.00 3.01
4917 10927 1.133262 CCTTGGATTCCATGAGCCCAT 60.133 52.381 17.82 0.00 31.53 4.00
4934 10944 2.223782 CCCATGGGTGTCAAATATTGCG 60.224 50.000 23.93 0.00 0.00 4.85
4948 10958 4.727507 ATATTGCGGGTTTGCACATTTA 57.272 36.364 0.00 0.00 46.25 1.40
4957 10967 6.153067 CGGGTTTGCACATTTAAACATCTAA 58.847 36.000 0.00 0.00 38.26 2.10
4960 10970 9.816354 GGGTTTGCACATTTAAACATCTAATAT 57.184 29.630 0.00 0.00 38.26 1.28
4999 11009 0.250513 GGAGCATCAGGAAACTCGGT 59.749 55.000 0.00 0.00 40.21 4.69
5012 11022 0.180406 ACTCGGTGGCTGTGACTTTT 59.820 50.000 0.00 0.00 0.00 2.27
5017 11027 1.269257 GGTGGCTGTGACTTTTGCTTC 60.269 52.381 0.00 0.00 0.00 3.86
5020 11030 0.040067 GCTGTGACTTTTGCTTCCCG 60.040 55.000 0.00 0.00 0.00 5.14
5061 11071 3.228188 TGGTTTCCTTGACTCTGCAAT 57.772 42.857 0.00 0.00 0.00 3.56
5073 11083 5.775686 TGACTCTGCAATTCAAGAATTTGG 58.224 37.500 5.34 0.00 38.84 3.28
5084 11094 9.762933 CAATTCAAGAATTTGGAAAAGTAAGGA 57.237 29.630 5.34 0.00 38.84 3.36
5122 11132 2.176798 TGGGTTTTCACAGGATTCAGGT 59.823 45.455 0.00 0.00 0.00 4.00
5130 11140 3.138283 TCACAGGATTCAGGTTGTTTCCT 59.862 43.478 0.00 0.00 37.29 3.36
5132 11142 2.744202 CAGGATTCAGGTTGTTTCCTCG 59.256 50.000 0.00 0.00 34.59 4.63
5137 11147 1.000607 TCAGGTTGTTTCCTCGACTCG 60.001 52.381 0.00 0.00 35.37 4.18
5140 11150 0.599204 GTTGTTTCCTCGACTCGGCA 60.599 55.000 0.00 0.00 0.00 5.69
5141 11151 0.105224 TTGTTTCCTCGACTCGGCAA 59.895 50.000 0.00 0.00 0.00 4.52
5159 11169 3.354397 GCAAGTTAGGAAATTCGATGCG 58.646 45.455 0.00 0.00 0.00 4.73
5191 11205 4.263506 ACCTTGGCTGAAATGCTACTAGTT 60.264 41.667 0.00 0.00 0.00 2.24
5216 11230 1.001181 ACACATGTTTCATGCAAGGGC 59.999 47.619 0.00 0.00 41.68 5.19
5219 11233 2.125952 GTTTCATGCAAGGGCCGC 60.126 61.111 0.00 0.00 40.13 6.53
5231 11245 0.550914 AGGGCCGCCAGATTTGATTA 59.449 50.000 12.58 0.00 0.00 1.75
5233 11247 1.270550 GGGCCGCCAGATTTGATTATG 59.729 52.381 12.58 0.00 0.00 1.90
5234 11248 1.956477 GGCCGCCAGATTTGATTATGT 59.044 47.619 3.91 0.00 0.00 2.29
5238 11252 4.202050 GCCGCCAGATTTGATTATGTCTTT 60.202 41.667 0.00 0.00 0.00 2.52
5246 11260 5.902613 TTTGATTATGTCTTTGGAGCCAG 57.097 39.130 0.00 0.00 0.00 4.85
5252 11266 0.813821 GTCTTTGGAGCCAGGAATGC 59.186 55.000 0.00 0.00 0.00 3.56
5274 11289 4.152223 GCCAAATGTTTTGCAGGTATTCAC 59.848 41.667 0.00 0.00 0.00 3.18
5285 11300 8.755696 TTTGCAGGTATTCACATTTAAACATC 57.244 30.769 0.00 0.00 0.00 3.06
5288 11303 8.584157 TGCAGGTATTCACATTTAAACATCTTT 58.416 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.946762 GCCGACCAGACACAAAGC 59.053 61.111 0.00 0.00 0.00 3.51
1 2 0.319211 TACGCCGACCAGACACAAAG 60.319 55.000 0.00 0.00 0.00 2.77
2 3 0.319211 CTACGCCGACCAGACACAAA 60.319 55.000 0.00 0.00 0.00 2.83
3 4 1.287815 CTACGCCGACCAGACACAA 59.712 57.895 0.00 0.00 0.00 3.33
4 5 1.900016 ACTACGCCGACCAGACACA 60.900 57.895 0.00 0.00 0.00 3.72
5 6 1.443872 CACTACGCCGACCAGACAC 60.444 63.158 0.00 0.00 0.00 3.67
6 7 2.632544 CCACTACGCCGACCAGACA 61.633 63.158 0.00 0.00 0.00 3.41
7 8 2.181021 CCACTACGCCGACCAGAC 59.819 66.667 0.00 0.00 0.00 3.51
8 9 2.282674 ACCACTACGCCGACCAGA 60.283 61.111 0.00 0.00 0.00 3.86
9 10 2.126071 CACCACTACGCCGACCAG 60.126 66.667 0.00 0.00 0.00 4.00
10 11 3.687102 CCACCACTACGCCGACCA 61.687 66.667 0.00 0.00 0.00 4.02
17 18 2.901051 GATGACCCGCCACCACTACG 62.901 65.000 0.00 0.00 0.00 3.51
18 19 1.153429 GATGACCCGCCACCACTAC 60.153 63.158 0.00 0.00 0.00 2.73
19 20 1.305802 AGATGACCCGCCACCACTA 60.306 57.895 0.00 0.00 0.00 2.74
20 21 2.607750 AGATGACCCGCCACCACT 60.608 61.111 0.00 0.00 0.00 4.00
21 22 2.436646 CAGATGACCCGCCACCAC 60.437 66.667 0.00 0.00 0.00 4.16
22 23 4.408821 GCAGATGACCCGCCACCA 62.409 66.667 0.00 0.00 0.00 4.17
28 29 2.584418 CAGAGCGCAGATGACCCG 60.584 66.667 11.47 0.00 0.00 5.28
29 30 1.520342 GACAGAGCGCAGATGACCC 60.520 63.158 11.47 0.00 0.00 4.46
30 31 1.875813 CGACAGAGCGCAGATGACC 60.876 63.158 11.47 2.34 0.00 4.02
31 32 0.865218 CTCGACAGAGCGCAGATGAC 60.865 60.000 11.47 4.52 37.73 3.06
32 33 1.431036 CTCGACAGAGCGCAGATGA 59.569 57.895 11.47 0.00 37.73 2.92
33 34 3.994587 CTCGACAGAGCGCAGATG 58.005 61.111 11.47 7.65 37.73 2.90
42 43 2.049156 CAACGGCAGCTCGACAGA 60.049 61.111 9.87 0.00 0.00 3.41
43 44 1.956170 AACAACGGCAGCTCGACAG 60.956 57.895 9.87 2.76 0.00 3.51
44 45 2.108157 AACAACGGCAGCTCGACA 59.892 55.556 9.87 0.00 0.00 4.35
45 46 2.551270 CAACAACGGCAGCTCGAC 59.449 61.111 9.87 0.00 0.00 4.20
46 47 2.664851 CCAACAACGGCAGCTCGA 60.665 61.111 9.87 0.00 0.00 4.04
54 55 1.139163 GAAGCAAATGCCAACAACGG 58.861 50.000 0.94 0.00 43.38 4.44
55 56 2.138596 AGAAGCAAATGCCAACAACG 57.861 45.000 0.94 0.00 43.38 4.10
56 57 3.721035 AGAAGAAGCAAATGCCAACAAC 58.279 40.909 0.94 0.00 43.38 3.32
57 58 4.099881 AGAAGAAGAAGCAAATGCCAACAA 59.900 37.500 0.94 0.00 43.38 2.83
58 59 3.638160 AGAAGAAGAAGCAAATGCCAACA 59.362 39.130 0.94 0.00 43.38 3.33
59 60 4.248691 AGAAGAAGAAGCAAATGCCAAC 57.751 40.909 0.94 0.00 43.38 3.77
60 61 4.942761 AAGAAGAAGAAGCAAATGCCAA 57.057 36.364 0.94 0.00 43.38 4.52
61 62 4.942761 AAAGAAGAAGAAGCAAATGCCA 57.057 36.364 0.94 0.00 43.38 4.92
62 63 5.987953 AGAAAAAGAAGAAGAAGCAAATGCC 59.012 36.000 0.94 0.00 43.38 4.40
63 64 7.474398 AAGAAAAAGAAGAAGAAGCAAATGC 57.526 32.000 0.00 0.00 42.49 3.56
64 65 9.698617 CAAAAGAAAAAGAAGAAGAAGCAAATG 57.301 29.630 0.00 0.00 0.00 2.32
65 66 8.886719 CCAAAAGAAAAAGAAGAAGAAGCAAAT 58.113 29.630 0.00 0.00 0.00 2.32
66 67 7.334171 CCCAAAAGAAAAAGAAGAAGAAGCAAA 59.666 33.333 0.00 0.00 0.00 3.68
67 68 6.818142 CCCAAAAGAAAAAGAAGAAGAAGCAA 59.182 34.615 0.00 0.00 0.00 3.91
68 69 6.340522 CCCAAAAGAAAAAGAAGAAGAAGCA 58.659 36.000 0.00 0.00 0.00 3.91
69 70 5.235186 GCCCAAAAGAAAAAGAAGAAGAAGC 59.765 40.000 0.00 0.00 0.00 3.86
70 71 6.577103 AGCCCAAAAGAAAAAGAAGAAGAAG 58.423 36.000 0.00 0.00 0.00 2.85
71 72 6.544928 AGCCCAAAAGAAAAAGAAGAAGAA 57.455 33.333 0.00 0.00 0.00 2.52
72 73 6.070824 ACAAGCCCAAAAGAAAAAGAAGAAGA 60.071 34.615 0.00 0.00 0.00 2.87
73 74 6.108687 ACAAGCCCAAAAGAAAAAGAAGAAG 58.891 36.000 0.00 0.00 0.00 2.85
74 75 6.048732 ACAAGCCCAAAAGAAAAAGAAGAA 57.951 33.333 0.00 0.00 0.00 2.52
75 76 5.675684 ACAAGCCCAAAAGAAAAAGAAGA 57.324 34.783 0.00 0.00 0.00 2.87
76 77 5.643348 ACAACAAGCCCAAAAGAAAAAGAAG 59.357 36.000 0.00 0.00 0.00 2.85
77 78 5.411053 CACAACAAGCCCAAAAGAAAAAGAA 59.589 36.000 0.00 0.00 0.00 2.52
78 79 4.934602 CACAACAAGCCCAAAAGAAAAAGA 59.065 37.500 0.00 0.00 0.00 2.52
79 80 4.694982 ACACAACAAGCCCAAAAGAAAAAG 59.305 37.500 0.00 0.00 0.00 2.27
80 81 4.646572 ACACAACAAGCCCAAAAGAAAAA 58.353 34.783 0.00 0.00 0.00 1.94
81 82 4.278975 ACACAACAAGCCCAAAAGAAAA 57.721 36.364 0.00 0.00 0.00 2.29
82 83 3.971245 ACACAACAAGCCCAAAAGAAA 57.029 38.095 0.00 0.00 0.00 2.52
83 84 3.007398 ACAACACAACAAGCCCAAAAGAA 59.993 39.130 0.00 0.00 0.00 2.52
84 85 2.564947 ACAACACAACAAGCCCAAAAGA 59.435 40.909 0.00 0.00 0.00 2.52
85 86 2.971307 ACAACACAACAAGCCCAAAAG 58.029 42.857 0.00 0.00 0.00 2.27
86 87 3.330267 GAACAACACAACAAGCCCAAAA 58.670 40.909 0.00 0.00 0.00 2.44
87 88 2.672478 CGAACAACACAACAAGCCCAAA 60.672 45.455 0.00 0.00 0.00 3.28
88 89 1.135257 CGAACAACACAACAAGCCCAA 60.135 47.619 0.00 0.00 0.00 4.12
89 90 0.453793 CGAACAACACAACAAGCCCA 59.546 50.000 0.00 0.00 0.00 5.36
90 91 0.869880 GCGAACAACACAACAAGCCC 60.870 55.000 0.00 0.00 0.00 5.19
91 92 0.869880 GGCGAACAACACAACAAGCC 60.870 55.000 0.00 0.00 36.32 4.35
92 93 0.869880 GGGCGAACAACACAACAAGC 60.870 55.000 0.00 0.00 0.00 4.01
93 94 0.248866 GGGGCGAACAACACAACAAG 60.249 55.000 0.00 0.00 0.00 3.16
94 95 0.965866 TGGGGCGAACAACACAACAA 60.966 50.000 0.00 0.00 0.00 2.83
95 96 1.378646 TGGGGCGAACAACACAACA 60.379 52.632 0.00 0.00 0.00 3.33
96 97 1.358759 CTGGGGCGAACAACACAAC 59.641 57.895 0.00 0.00 0.00 3.32
97 98 2.485795 GCTGGGGCGAACAACACAA 61.486 57.895 0.00 0.00 0.00 3.33
98 99 2.904866 GCTGGGGCGAACAACACA 60.905 61.111 0.00 0.00 0.00 3.72
116 117 3.181510 GCAACCAACACCGATACAGAATC 60.182 47.826 0.00 0.00 0.00 2.52
117 118 2.747446 GCAACCAACACCGATACAGAAT 59.253 45.455 0.00 0.00 0.00 2.40
118 119 2.147958 GCAACCAACACCGATACAGAA 58.852 47.619 0.00 0.00 0.00 3.02
119 120 1.346395 AGCAACCAACACCGATACAGA 59.654 47.619 0.00 0.00 0.00 3.41
120 121 1.808411 AGCAACCAACACCGATACAG 58.192 50.000 0.00 0.00 0.00 2.74
121 122 2.264005 AAGCAACCAACACCGATACA 57.736 45.000 0.00 0.00 0.00 2.29
122 123 2.351350 CCAAAGCAACCAACACCGATAC 60.351 50.000 0.00 0.00 0.00 2.24
123 124 1.883275 CCAAAGCAACCAACACCGATA 59.117 47.619 0.00 0.00 0.00 2.92
124 125 0.673437 CCAAAGCAACCAACACCGAT 59.327 50.000 0.00 0.00 0.00 4.18
125 126 0.394488 TCCAAAGCAACCAACACCGA 60.394 50.000 0.00 0.00 0.00 4.69
126 127 0.457851 TTCCAAAGCAACCAACACCG 59.542 50.000 0.00 0.00 0.00 4.94
127 128 2.908688 ATTCCAAAGCAACCAACACC 57.091 45.000 0.00 0.00 0.00 4.16
128 129 4.314740 TGTATTCCAAAGCAACCAACAC 57.685 40.909 0.00 0.00 0.00 3.32
129 130 5.344743 TTTGTATTCCAAAGCAACCAACA 57.655 34.783 0.00 0.00 38.12 3.33
139 140 2.040545 TCCCTCCGCTTTGTATTCCAAA 59.959 45.455 0.00 0.00 40.71 3.28
140 141 1.631388 TCCCTCCGCTTTGTATTCCAA 59.369 47.619 0.00 0.00 0.00 3.53
141 142 1.281419 TCCCTCCGCTTTGTATTCCA 58.719 50.000 0.00 0.00 0.00 3.53
142 143 2.413310 TTCCCTCCGCTTTGTATTCC 57.587 50.000 0.00 0.00 0.00 3.01
143 144 2.422479 GGTTTCCCTCCGCTTTGTATTC 59.578 50.000 0.00 0.00 0.00 1.75
144 145 2.443416 GGTTTCCCTCCGCTTTGTATT 58.557 47.619 0.00 0.00 0.00 1.89
145 146 1.340697 GGGTTTCCCTCCGCTTTGTAT 60.341 52.381 0.00 0.00 41.34 2.29
146 147 0.037160 GGGTTTCCCTCCGCTTTGTA 59.963 55.000 0.00 0.00 41.34 2.41
147 148 1.228459 GGGTTTCCCTCCGCTTTGT 60.228 57.895 0.00 0.00 41.34 2.83
148 149 3.681473 GGGTTTCCCTCCGCTTTG 58.319 61.111 0.00 0.00 41.34 2.77
157 158 3.005050 CACTTACCGAAAAAGGGTTTCCC 59.995 47.826 0.00 0.00 45.90 3.97
158 159 3.884693 TCACTTACCGAAAAAGGGTTTCC 59.115 43.478 0.00 0.00 38.99 3.13
159 160 5.503662 TTCACTTACCGAAAAAGGGTTTC 57.496 39.130 0.00 0.00 38.99 2.78
160 161 5.185442 TGTTTCACTTACCGAAAAAGGGTTT 59.815 36.000 0.00 0.00 38.99 3.27
161 162 4.705991 TGTTTCACTTACCGAAAAAGGGTT 59.294 37.500 0.00 0.00 38.99 4.11
162 163 4.096833 GTGTTTCACTTACCGAAAAAGGGT 59.903 41.667 0.00 0.00 41.62 4.34
163 164 4.603985 GTGTTTCACTTACCGAAAAAGGG 58.396 43.478 0.00 0.00 34.32 3.95
164 165 4.034279 TCGTGTTTCACTTACCGAAAAAGG 59.966 41.667 0.00 0.00 34.32 3.11
165 166 5.146482 TCGTGTTTCACTTACCGAAAAAG 57.854 39.130 0.00 0.00 34.32 2.27
166 167 5.738118 ATCGTGTTTCACTTACCGAAAAA 57.262 34.783 0.00 0.00 34.32 1.94
167 168 5.107375 GCTATCGTGTTTCACTTACCGAAAA 60.107 40.000 0.00 0.00 34.32 2.29
168 169 4.386652 GCTATCGTGTTTCACTTACCGAAA 59.613 41.667 0.00 0.00 31.34 3.46
169 170 3.922240 GCTATCGTGTTTCACTTACCGAA 59.078 43.478 0.00 0.00 31.34 4.30
170 171 3.504863 GCTATCGTGTTTCACTTACCGA 58.495 45.455 0.00 0.00 31.34 4.69
171 172 2.601763 GGCTATCGTGTTTCACTTACCG 59.398 50.000 0.00 0.00 31.34 4.02
172 173 2.934553 GGGCTATCGTGTTTCACTTACC 59.065 50.000 0.00 0.00 31.34 2.85
188 189 3.352648 GCTTATTTGTGAACCTGGGCTA 58.647 45.455 0.00 0.00 0.00 3.93
210 214 2.497675 TCCCAAGAGAATCGTCCTGAAG 59.502 50.000 0.00 0.00 42.67 3.02
235 243 3.391506 TCTATCATGCTCCACCGAATG 57.608 47.619 0.00 0.00 0.00 2.67
267 275 6.782150 TGATAATACTGACGAGTATATGCCG 58.218 40.000 0.00 1.38 43.46 5.69
271 279 8.293699 TGGCATGATAATACTGACGAGTATAT 57.706 34.615 0.00 0.00 43.46 0.86
279 287 7.458409 AAATCCATGGCATGATAATACTGAC 57.542 36.000 28.43 0.00 0.00 3.51
360 384 6.908593 ACAGCAACCTATATATCCCCATCATA 59.091 38.462 0.00 0.00 0.00 2.15
373 397 5.130975 AGTCAATGATCCACAGCAACCTATA 59.869 40.000 0.00 0.00 0.00 1.31
374 398 4.080129 AGTCAATGATCCACAGCAACCTAT 60.080 41.667 0.00 0.00 0.00 2.57
375 399 3.264193 AGTCAATGATCCACAGCAACCTA 59.736 43.478 0.00 0.00 0.00 3.08
376 400 2.040813 AGTCAATGATCCACAGCAACCT 59.959 45.455 0.00 0.00 0.00 3.50
382 406 6.039047 CAGGGAAATTAGTCAATGATCCACAG 59.961 42.308 1.39 0.00 34.68 3.66
400 424 1.896660 GGTCGCACTTGCAGGGAAA 60.897 57.895 0.00 0.00 42.21 3.13
403 427 2.594303 TTGGTCGCACTTGCAGGG 60.594 61.111 0.00 0.00 42.21 4.45
451 476 3.084786 GTTGTCAAGGAGAGGAAATGGG 58.915 50.000 0.00 0.00 0.00 4.00
469 494 1.536709 GCAAAGTTGGCAGGTCAGTTG 60.537 52.381 0.00 0.00 0.00 3.16
481 506 4.818534 TTTAGCTGACTCTGCAAAGTTG 57.181 40.909 10.24 0.00 0.00 3.16
482 507 5.300286 ACAATTTAGCTGACTCTGCAAAGTT 59.700 36.000 10.24 0.00 0.00 2.66
566 593 8.560374 CCAAGTAACGAAGAAAGAAAGAAAGAT 58.440 33.333 0.00 0.00 0.00 2.40
604 631 3.117663 GGCTCCCCACTGACCATTATTTA 60.118 47.826 0.00 0.00 0.00 1.40
815 855 0.106918 TTGGTTTTCCCGCAGACACT 60.107 50.000 0.00 0.00 39.73 3.55
816 856 0.741915 TTTGGTTTTCCCGCAGACAC 59.258 50.000 0.00 0.00 39.73 3.67
836 876 2.705658 TCACGCCCCAGATGATCTATTT 59.294 45.455 0.00 0.00 0.00 1.40
837 877 2.037772 GTCACGCCCCAGATGATCTATT 59.962 50.000 0.00 0.00 0.00 1.73
840 880 1.690219 GGTCACGCCCCAGATGATCT 61.690 60.000 0.00 0.00 0.00 2.75
841 881 1.227674 GGTCACGCCCCAGATGATC 60.228 63.158 0.00 0.00 0.00 2.92
842 882 1.690219 GAGGTCACGCCCCAGATGAT 61.690 60.000 0.00 0.00 38.26 2.45
843 883 2.284625 AGGTCACGCCCCAGATGA 60.285 61.111 0.00 0.00 38.26 2.92
844 884 2.184020 TTGAGGTCACGCCCCAGATG 62.184 60.000 0.00 0.00 38.26 2.90
845 885 1.274703 ATTGAGGTCACGCCCCAGAT 61.275 55.000 0.00 0.00 38.26 2.90
846 886 0.616395 TATTGAGGTCACGCCCCAGA 60.616 55.000 0.00 0.00 38.26 3.86
847 887 0.179073 CTATTGAGGTCACGCCCCAG 60.179 60.000 0.00 0.00 38.26 4.45
848 888 0.616395 TCTATTGAGGTCACGCCCCA 60.616 55.000 0.00 0.00 38.26 4.96
849 889 0.539986 TTCTATTGAGGTCACGCCCC 59.460 55.000 0.00 0.00 38.26 5.80
859 899 5.452078 TTGTTTGGCTTGGTTCTATTGAG 57.548 39.130 0.00 0.00 0.00 3.02
933 983 3.368495 TGTGTGCGTGCTTAGATATACG 58.632 45.455 0.00 0.00 39.37 3.06
934 984 5.712217 TTTGTGTGCGTGCTTAGATATAC 57.288 39.130 0.00 0.00 0.00 1.47
935 985 4.270084 GCTTTGTGTGCGTGCTTAGATATA 59.730 41.667 0.00 0.00 0.00 0.86
936 986 3.063997 GCTTTGTGTGCGTGCTTAGATAT 59.936 43.478 0.00 0.00 0.00 1.63
963 1015 3.691609 GGAACAATCAGAGATTGGGTGTC 59.308 47.826 20.15 12.60 33.56 3.67
967 1019 4.226427 TGAGGAACAATCAGAGATTGGG 57.774 45.455 20.15 1.20 33.56 4.12
968 1020 5.494724 TCTTGAGGAACAATCAGAGATTGG 58.505 41.667 20.15 6.27 37.88 3.16
982 1034 4.074970 GCCATTTCTCTGTTCTTGAGGAA 58.925 43.478 0.00 0.00 34.01 3.36
983 1035 3.328931 AGCCATTTCTCTGTTCTTGAGGA 59.671 43.478 0.00 0.00 32.78 3.71
984 1036 3.683802 AGCCATTTCTCTGTTCTTGAGG 58.316 45.455 0.00 0.00 32.78 3.86
985 1037 3.688673 GGAGCCATTTCTCTGTTCTTGAG 59.311 47.826 0.00 0.00 33.70 3.02
986 1038 3.328931 AGGAGCCATTTCTCTGTTCTTGA 59.671 43.478 0.00 0.00 33.70 3.02
999 1051 2.162681 CCGAAAACTTGAGGAGCCATT 58.837 47.619 0.00 0.00 0.00 3.16
1031 1083 2.288666 CATGGTGGGAAGGTACAATCG 58.711 52.381 0.00 0.00 0.00 3.34
1038 1090 1.136329 AGAGTGCATGGTGGGAAGGT 61.136 55.000 0.00 0.00 0.00 3.50
1101 1153 1.335324 GCTTGTGCTGATGTGAACACC 60.335 52.381 2.46 0.00 36.03 4.16
1180 1232 1.150536 GAACACTGGCTGGGTCCAA 59.849 57.895 0.00 0.00 35.36 3.53
1181 1233 1.768684 GAGAACACTGGCTGGGTCCA 61.769 60.000 0.00 0.00 34.42 4.02
1188 1240 1.134580 CATGATCGGAGAACACTGGCT 60.135 52.381 0.00 0.00 43.42 4.75
1192 1244 0.179100 CGCCATGATCGGAGAACACT 60.179 55.000 0.00 0.00 43.42 3.55
1225 1277 2.047844 TCGCCAGCTGCAGAAGTC 60.048 61.111 20.43 0.00 41.33 3.01
1270 1322 2.157834 TGTATGGACACAACACGGAC 57.842 50.000 0.00 0.00 0.00 4.79
1427 1479 1.074775 TTGCCGGCAAGATTCAGGT 59.925 52.632 37.30 0.00 0.00 4.00
1440 1492 3.243234 TGTTACCTGAAAACATGTTGCCG 60.243 43.478 12.82 4.18 32.07 5.69
1486 1538 6.989169 GCAAGGTTGACATATCTAAGAGATGT 59.011 38.462 8.63 8.63 45.40 3.06
1576 1628 4.989168 AGCTAAGTTGTTACGTGAAAGGAG 59.011 41.667 0.00 0.00 0.00 3.69
1581 1633 3.395639 CCCAGCTAAGTTGTTACGTGAA 58.604 45.455 0.00 0.00 0.00 3.18
1643 1695 3.053842 AGCATTCCACTGGAGATCAACAT 60.054 43.478 0.00 0.00 31.21 2.71
1677 1729 6.923012 TGACATCTTTTGTAAATGTGGGATG 58.077 36.000 0.00 0.00 39.18 3.51
1689 1741 2.812591 CTGCAGAGCTGACATCTTTTGT 59.187 45.455 8.42 0.00 42.79 2.83
1722 1774 6.435904 TGGTACCATAAAGAAAATTCCCTGTG 59.564 38.462 11.60 0.00 0.00 3.66
1816 1868 1.760029 ACCCAAAGTTTGCGGAATTGT 59.240 42.857 22.48 4.53 0.00 2.71
1950 2002 5.357257 TCGGAAGCTATCTGTCCAATAAAC 58.643 41.667 2.43 0.00 35.76 2.01
1966 2018 0.171231 GAGTGGCCAATTTCGGAAGC 59.829 55.000 7.24 0.00 0.00 3.86
2066 2118 1.357258 AAGATCAAGCACTCGCAGCG 61.357 55.000 9.06 9.06 42.27 5.18
2095 2147 2.546494 GCACCACACCAGTCAGCAC 61.546 63.158 0.00 0.00 0.00 4.40
2224 2276 7.228108 CAGGATATTCCCATCCAATGATAATCG 59.772 40.741 5.02 0.00 46.04 3.34
2233 2285 4.669290 TCCATTCAGGATATTCCCATCCAA 59.331 41.667 5.02 0.00 46.04 3.53
2257 2309 1.269723 GCCTACTGTCTTTGGCAAACC 59.730 52.381 8.93 3.30 44.34 3.27
2289 2341 1.711206 AGTTTAACCGCTCGAGCTTC 58.289 50.000 32.88 15.23 39.32 3.86
2328 2380 0.539986 TCTCTGCGGGTATGTTTCCC 59.460 55.000 0.00 0.00 41.41 3.97
2599 2657 3.988379 TCCATCAAAGTTGTTGACTGC 57.012 42.857 4.09 0.00 39.00 4.40
2611 2669 5.715439 ACTCTTGGTATGGATCCATCAAA 57.285 39.130 30.61 20.24 37.82 2.69
2633 2691 7.132805 TGAGAGGGAAGAAATATTGAGGAGTA 58.867 38.462 0.00 0.00 0.00 2.59
3032 3090 6.773200 TGTTTCACATAATCCTGTGTTACCAA 59.227 34.615 4.33 0.00 45.40 3.67
3297 9253 0.248702 GACTCGAGCTGATCCGGTTC 60.249 60.000 13.61 2.73 0.00 3.62
3401 9357 5.179368 CACTCGGTGAAAAAGCTATTTCTCA 59.821 40.000 0.00 0.00 39.51 3.27
3432 9388 1.520600 GGTGGCGGGTGTGTTTTAGG 61.521 60.000 0.00 0.00 0.00 2.69
3619 9575 0.383231 GCCACATCAGCAGCAATACC 59.617 55.000 0.00 0.00 0.00 2.73
3771 9727 0.469917 CTGGTCCGCCAATACCTGAT 59.530 55.000 0.00 0.00 45.51 2.90
3899 9862 6.099341 CACATAAATGCTTGGGAAACTAACC 58.901 40.000 0.00 0.00 0.00 2.85
4074 10037 0.976073 TCGGGGAAGGCTAGGTCAAG 60.976 60.000 0.00 0.00 0.00 3.02
4098 10061 2.223852 GGGGATCTAGAACTTCAGCGAC 60.224 54.545 0.00 0.00 0.00 5.19
4399 10383 3.422417 TTCTGCGACTGATACAGCTAC 57.578 47.619 0.00 0.00 34.37 3.58
4436 10433 3.117491 AGCGGTGGATAATGTCAGATG 57.883 47.619 0.00 0.00 0.00 2.90
4443 10441 3.310774 GCATAGCATAGCGGTGGATAATG 59.689 47.826 0.00 0.00 0.00 1.90
4499 10498 9.846248 AAAAATGCTCACTTCAACATAAGATAC 57.154 29.630 0.00 0.00 0.00 2.24
4505 10504 7.083858 GTGCTAAAAATGCTCACTTCAACATA 58.916 34.615 0.00 0.00 0.00 2.29
4507 10506 5.280945 GTGCTAAAAATGCTCACTTCAACA 58.719 37.500 0.00 0.00 0.00 3.33
4508 10507 4.681483 GGTGCTAAAAATGCTCACTTCAAC 59.319 41.667 0.00 0.00 0.00 3.18
4519 10518 4.159377 TCGCTTTCAGGTGCTAAAAATG 57.841 40.909 0.00 0.00 0.00 2.32
4520 10519 4.546570 GTTCGCTTTCAGGTGCTAAAAAT 58.453 39.130 0.00 0.00 0.00 1.82
4525 10525 0.032952 ACGTTCGCTTTCAGGTGCTA 59.967 50.000 0.00 0.00 0.00 3.49
4542 10542 6.799925 AGTTCAGTGAAACAAAGTTTTACACG 59.200 34.615 7.25 9.27 41.43 4.49
4546 10546 6.682746 TGCAGTTCAGTGAAACAAAGTTTTA 58.317 32.000 7.25 0.00 41.43 1.52
4555 10565 2.289002 CACCTCTGCAGTTCAGTGAAAC 59.711 50.000 14.67 2.37 43.32 2.78
4569 10579 3.057736 CAGACAGGAAAAATGCACCTCTG 60.058 47.826 0.00 0.00 31.06 3.35
4582 10592 5.324409 ACCAAATAGCATTTCAGACAGGAA 58.676 37.500 0.00 0.00 0.00 3.36
4595 10605 5.183140 GTGAAGAAAGCCTAACCAAATAGCA 59.817 40.000 0.00 0.00 0.00 3.49
4603 10613 4.911514 TTTGTGTGAAGAAAGCCTAACC 57.088 40.909 0.00 0.00 0.00 2.85
4622 10632 9.890629 TTCTGTGAGTGATACAGCTATAATTTT 57.109 29.630 0.00 0.00 43.97 1.82
4629 10639 9.355916 AGTTATATTCTGTGAGTGATACAGCTA 57.644 33.333 0.00 0.00 43.97 3.32
4630 10640 8.140628 CAGTTATATTCTGTGAGTGATACAGCT 58.859 37.037 0.00 0.00 43.97 4.24
4631 10641 7.923344 ACAGTTATATTCTGTGAGTGATACAGC 59.077 37.037 10.92 0.00 43.97 4.40
4636 10646 9.809096 CTGTTACAGTTATATTCTGTGAGTGAT 57.191 33.333 17.70 0.00 44.41 3.06
4637 10647 8.803235 ACTGTTACAGTTATATTCTGTGAGTGA 58.197 33.333 12.76 1.78 42.59 3.41
4638 10648 8.988064 ACTGTTACAGTTATATTCTGTGAGTG 57.012 34.615 12.76 10.58 42.59 3.51
4667 10677 9.793259 ACGGTGGATAATTTCAGATACATAATT 57.207 29.630 0.00 0.00 0.00 1.40
4668 10678 9.793259 AACGGTGGATAATTTCAGATACATAAT 57.207 29.630 0.00 0.00 0.00 1.28
4671 10681 9.219603 CATAACGGTGGATAATTTCAGATACAT 57.780 33.333 0.00 0.00 0.00 2.29
4672 10682 7.172532 GCATAACGGTGGATAATTTCAGATACA 59.827 37.037 0.00 0.00 0.00 2.29
4673 10683 7.360946 GGCATAACGGTGGATAATTTCAGATAC 60.361 40.741 0.00 0.00 0.00 2.24
4674 10684 6.653320 GGCATAACGGTGGATAATTTCAGATA 59.347 38.462 0.00 0.00 0.00 1.98
4675 10685 5.473504 GGCATAACGGTGGATAATTTCAGAT 59.526 40.000 0.00 0.00 0.00 2.90
4676 10686 4.819630 GGCATAACGGTGGATAATTTCAGA 59.180 41.667 0.00 0.00 0.00 3.27
4677 10687 4.821805 AGGCATAACGGTGGATAATTTCAG 59.178 41.667 0.00 0.00 0.00 3.02
4678 10688 4.787551 AGGCATAACGGTGGATAATTTCA 58.212 39.130 0.00 0.00 0.00 2.69
4679 10689 6.622896 GCATAGGCATAACGGTGGATAATTTC 60.623 42.308 0.00 0.00 40.72 2.17
4680 10690 5.183140 GCATAGGCATAACGGTGGATAATTT 59.817 40.000 0.00 0.00 40.72 1.82
4681 10691 4.700213 GCATAGGCATAACGGTGGATAATT 59.300 41.667 0.00 0.00 40.72 1.40
4682 10692 4.261801 GCATAGGCATAACGGTGGATAAT 58.738 43.478 0.00 0.00 40.72 1.28
4683 10693 3.670625 GCATAGGCATAACGGTGGATAA 58.329 45.455 0.00 0.00 40.72 1.75
4684 10694 3.328382 GCATAGGCATAACGGTGGATA 57.672 47.619 0.00 0.00 40.72 2.59
4685 10695 2.185004 GCATAGGCATAACGGTGGAT 57.815 50.000 0.00 0.00 40.72 3.41
4686 10696 3.698250 GCATAGGCATAACGGTGGA 57.302 52.632 0.00 0.00 40.72 4.02
4697 10707 2.162681 GATTATGGTGGGTGCATAGGC 58.837 52.381 0.00 0.00 41.68 3.93
4698 10708 3.415212 CTGATTATGGTGGGTGCATAGG 58.585 50.000 0.00 0.00 0.00 2.57
4699 10709 2.816087 GCTGATTATGGTGGGTGCATAG 59.184 50.000 0.00 0.00 0.00 2.23
4700 10710 2.810032 CGCTGATTATGGTGGGTGCATA 60.810 50.000 0.00 0.00 0.00 3.14
4701 10711 1.696063 GCTGATTATGGTGGGTGCAT 58.304 50.000 0.00 0.00 0.00 3.96
4702 10712 0.747644 CGCTGATTATGGTGGGTGCA 60.748 55.000 0.00 0.00 0.00 4.57
4703 10713 1.447317 CCGCTGATTATGGTGGGTGC 61.447 60.000 0.00 0.00 0.00 5.01
4704 10714 0.107214 ACCGCTGATTATGGTGGGTG 60.107 55.000 0.00 0.00 37.42 4.61
4705 10715 2.307153 ACCGCTGATTATGGTGGGT 58.693 52.632 0.00 0.00 37.42 4.51
4709 10719 0.541392 TCTGCACCGCTGATTATGGT 59.459 50.000 0.00 0.00 36.10 3.55
4710 10720 1.802960 GATCTGCACCGCTGATTATGG 59.197 52.381 9.33 0.00 44.82 2.74
4711 10721 2.763933 AGATCTGCACCGCTGATTATG 58.236 47.619 9.33 0.00 44.82 1.90
4712 10722 3.482156 AAGATCTGCACCGCTGATTAT 57.518 42.857 9.33 0.71 44.82 1.28
4713 10723 2.988010 AAGATCTGCACCGCTGATTA 57.012 45.000 9.33 0.00 44.82 1.75
4714 10724 2.169352 AGTAAGATCTGCACCGCTGATT 59.831 45.455 9.33 0.00 44.82 2.57
4715 10725 1.759445 AGTAAGATCTGCACCGCTGAT 59.241 47.619 7.92 7.92 46.81 2.90
4716 10726 1.186200 AGTAAGATCTGCACCGCTGA 58.814 50.000 0.00 0.00 40.47 4.26
4717 10727 2.015736 AAGTAAGATCTGCACCGCTG 57.984 50.000 0.00 0.00 0.00 5.18
4718 10728 2.289694 ACAAAGTAAGATCTGCACCGCT 60.290 45.455 0.00 0.00 0.00 5.52
4719 10729 2.076863 ACAAAGTAAGATCTGCACCGC 58.923 47.619 0.00 0.00 0.00 5.68
4720 10730 3.307242 GCTACAAAGTAAGATCTGCACCG 59.693 47.826 0.00 0.00 0.00 4.94
4721 10731 4.508662 AGCTACAAAGTAAGATCTGCACC 58.491 43.478 0.00 0.00 0.00 5.01
4722 10732 5.171476 TGAGCTACAAAGTAAGATCTGCAC 58.829 41.667 0.00 0.00 0.00 4.57
4723 10733 5.405935 TGAGCTACAAAGTAAGATCTGCA 57.594 39.130 0.00 0.00 0.00 4.41
4724 10734 8.494347 CAATATGAGCTACAAAGTAAGATCTGC 58.506 37.037 0.00 0.00 0.00 4.26
4725 10735 9.755804 TCAATATGAGCTACAAAGTAAGATCTG 57.244 33.333 0.00 0.00 0.00 2.90
4729 10739 9.371136 CACTTCAATATGAGCTACAAAGTAAGA 57.629 33.333 0.00 0.00 0.00 2.10
4730 10740 9.371136 TCACTTCAATATGAGCTACAAAGTAAG 57.629 33.333 0.00 0.00 0.00 2.34
4731 10741 9.371136 CTCACTTCAATATGAGCTACAAAGTAA 57.629 33.333 0.00 0.00 36.22 2.24
4732 10742 8.531982 ACTCACTTCAATATGAGCTACAAAGTA 58.468 33.333 1.21 0.00 45.23 2.24
4733 10743 7.390027 ACTCACTTCAATATGAGCTACAAAGT 58.610 34.615 1.21 0.00 45.23 2.66
4734 10744 7.840342 ACTCACTTCAATATGAGCTACAAAG 57.160 36.000 1.21 0.00 45.23 2.77
4735 10745 8.531982 AGTACTCACTTCAATATGAGCTACAAA 58.468 33.333 1.21 0.00 45.23 2.83
4736 10746 8.067751 AGTACTCACTTCAATATGAGCTACAA 57.932 34.615 1.21 0.00 45.23 2.41
4737 10747 7.646548 AGTACTCACTTCAATATGAGCTACA 57.353 36.000 1.21 0.00 45.23 2.74
4738 10748 8.934507 AAAGTACTCACTTCAATATGAGCTAC 57.065 34.615 0.00 4.27 44.41 3.58
4740 10750 7.708752 GCTAAAGTACTCACTTCAATATGAGCT 59.291 37.037 0.00 0.00 44.41 4.09
4741 10751 7.306283 CGCTAAAGTACTCACTTCAATATGAGC 60.306 40.741 0.00 0.00 44.41 4.26
4742 10752 7.702772 ACGCTAAAGTACTCACTTCAATATGAG 59.297 37.037 0.00 0.00 44.41 2.90
4743 10753 7.544622 ACGCTAAAGTACTCACTTCAATATGA 58.455 34.615 0.00 0.00 44.41 2.15
4744 10754 7.043325 GGACGCTAAAGTACTCACTTCAATATG 60.043 40.741 0.00 0.00 44.41 1.78
4745 10755 6.979238 GGACGCTAAAGTACTCACTTCAATAT 59.021 38.462 0.00 0.00 44.41 1.28
4746 10756 6.327934 GGACGCTAAAGTACTCACTTCAATA 58.672 40.000 0.00 0.00 44.41 1.90
4747 10757 5.169295 GGACGCTAAAGTACTCACTTCAAT 58.831 41.667 0.00 0.00 44.41 2.57
4748 10758 4.553323 GGACGCTAAAGTACTCACTTCAA 58.447 43.478 0.00 0.00 44.41 2.69
4749 10759 3.365666 CGGACGCTAAAGTACTCACTTCA 60.366 47.826 0.00 0.00 44.41 3.02
4750 10760 3.120060 TCGGACGCTAAAGTACTCACTTC 60.120 47.826 0.00 0.00 44.41 3.01
4752 10762 2.430465 TCGGACGCTAAAGTACTCACT 58.570 47.619 0.00 0.00 36.19 3.41
4753 10763 2.907910 TCGGACGCTAAAGTACTCAC 57.092 50.000 0.00 0.00 0.00 3.51
4754 10764 3.829948 CTTTCGGACGCTAAAGTACTCA 58.170 45.455 0.00 0.00 0.00 3.41
4755 10765 2.597748 GCTTTCGGACGCTAAAGTACTC 59.402 50.000 0.00 0.00 35.56 2.59
4756 10766 2.029649 TGCTTTCGGACGCTAAAGTACT 60.030 45.455 0.00 0.00 35.56 2.73
4757 10767 2.331194 TGCTTTCGGACGCTAAAGTAC 58.669 47.619 0.00 0.00 35.56 2.73
4758 10768 2.602878 CTGCTTTCGGACGCTAAAGTA 58.397 47.619 0.00 3.32 35.56 2.24
4759 10769 1.429463 CTGCTTTCGGACGCTAAAGT 58.571 50.000 0.00 0.00 35.56 2.66
4760 10770 0.095417 GCTGCTTTCGGACGCTAAAG 59.905 55.000 0.00 2.63 36.09 1.85
4761 10771 1.623081 CGCTGCTTTCGGACGCTAAA 61.623 55.000 0.00 0.00 0.00 1.85
4762 10772 2.092291 CGCTGCTTTCGGACGCTAA 61.092 57.895 0.00 0.00 0.00 3.09
4763 10773 2.480853 TTCGCTGCTTTCGGACGCTA 62.481 55.000 0.00 0.00 0.00 4.26
4764 10774 3.858868 TTCGCTGCTTTCGGACGCT 62.859 57.895 0.00 0.00 0.00 5.07
4765 10775 3.354499 CTTCGCTGCTTTCGGACGC 62.354 63.158 0.00 0.00 0.00 5.19
4766 10776 2.730672 CCTTCGCTGCTTTCGGACG 61.731 63.158 0.00 0.00 0.00 4.79
4767 10777 1.668151 ACCTTCGCTGCTTTCGGAC 60.668 57.895 0.00 0.00 0.00 4.79
4768 10778 1.667830 CACCTTCGCTGCTTTCGGA 60.668 57.895 0.00 0.00 0.00 4.55
4769 10779 2.863153 CACCTTCGCTGCTTTCGG 59.137 61.111 0.00 0.00 0.00 4.30
4770 10780 2.174349 GCACCTTCGCTGCTTTCG 59.826 61.111 0.00 0.00 0.00 3.46
4771 10781 2.174349 CGCACCTTCGCTGCTTTC 59.826 61.111 0.00 0.00 32.03 2.62
4772 10782 2.280797 TCGCACCTTCGCTGCTTT 60.281 55.556 0.00 0.00 32.03 3.51
4773 10783 2.740055 CTCGCACCTTCGCTGCTT 60.740 61.111 0.00 0.00 32.03 3.91
4776 10786 3.184683 GAGCTCGCACCTTCGCTG 61.185 66.667 0.00 0.00 31.96 5.18
4777 10787 2.936912 AAGAGCTCGCACCTTCGCT 61.937 57.895 8.37 0.00 35.03 4.93
4778 10788 2.433318 AAGAGCTCGCACCTTCGC 60.433 61.111 8.37 0.00 0.00 4.70
4779 10789 2.734673 GCAAGAGCTCGCACCTTCG 61.735 63.158 8.37 0.00 37.91 3.79
4780 10790 1.230635 TTGCAAGAGCTCGCACCTTC 61.231 55.000 14.87 0.02 42.74 3.46
4781 10791 0.819259 TTTGCAAGAGCTCGCACCTT 60.819 50.000 14.87 0.00 42.74 3.50
4782 10792 0.819259 TTTTGCAAGAGCTCGCACCT 60.819 50.000 14.87 0.00 42.74 4.00
4783 10793 0.661483 GTTTTGCAAGAGCTCGCACC 60.661 55.000 14.87 4.15 42.74 5.01
4784 10794 0.308993 AGTTTTGCAAGAGCTCGCAC 59.691 50.000 14.87 5.95 42.74 5.34
4785 10795 0.588252 GAGTTTTGCAAGAGCTCGCA 59.412 50.000 11.70 11.70 42.74 5.10
4786 10796 0.871057 AGAGTTTTGCAAGAGCTCGC 59.129 50.000 8.37 7.40 42.74 5.03
4787 10797 1.869767 ACAGAGTTTTGCAAGAGCTCG 59.130 47.619 8.37 14.01 42.74 5.03
4788 10798 3.978718 AACAGAGTTTTGCAAGAGCTC 57.021 42.857 5.27 5.27 42.74 4.09
4789 10799 3.696051 TGAAACAGAGTTTTGCAAGAGCT 59.304 39.130 0.00 0.00 42.74 4.09
4790 10800 3.793492 GTGAAACAGAGTTTTGCAAGAGC 59.207 43.478 0.00 0.00 37.94 4.09
4791 10801 5.032863 CAGTGAAACAGAGTTTTGCAAGAG 58.967 41.667 0.00 0.00 41.43 2.85
4792 10802 4.699735 TCAGTGAAACAGAGTTTTGCAAGA 59.300 37.500 0.00 0.00 41.43 3.02
4793 10803 4.985413 TCAGTGAAACAGAGTTTTGCAAG 58.015 39.130 0.00 0.00 41.43 4.01
4794 10804 5.048083 AGTTCAGTGAAACAGAGTTTTGCAA 60.048 36.000 7.25 0.00 41.43 4.08
4795 10805 4.458989 AGTTCAGTGAAACAGAGTTTTGCA 59.541 37.500 7.25 0.00 41.43 4.08
4796 10806 4.795278 CAGTTCAGTGAAACAGAGTTTTGC 59.205 41.667 7.25 0.00 41.43 3.68
4797 10807 5.942872 ACAGTTCAGTGAAACAGAGTTTTG 58.057 37.500 7.25 0.00 41.43 2.44
4798 10808 7.103641 TCTACAGTTCAGTGAAACAGAGTTTT 58.896 34.615 7.25 0.00 41.43 2.43
4799 10809 6.640518 TCTACAGTTCAGTGAAACAGAGTTT 58.359 36.000 7.25 0.00 41.43 2.66
4800 10810 6.222038 TCTACAGTTCAGTGAAACAGAGTT 57.778 37.500 7.25 0.00 41.43 3.01
4801 10811 5.221342 CCTCTACAGTTCAGTGAAACAGAGT 60.221 44.000 21.13 13.44 41.43 3.24
4802 10812 5.221342 ACCTCTACAGTTCAGTGAAACAGAG 60.221 44.000 7.25 14.87 41.43 3.35
4803 10813 4.649674 ACCTCTACAGTTCAGTGAAACAGA 59.350 41.667 7.25 6.92 41.43 3.41
4804 10814 4.747108 CACCTCTACAGTTCAGTGAAACAG 59.253 45.833 7.25 3.14 41.43 3.16
4805 10815 4.693283 CACCTCTACAGTTCAGTGAAACA 58.307 43.478 7.25 0.00 41.43 2.83
4806 10816 3.495001 GCACCTCTACAGTTCAGTGAAAC 59.505 47.826 7.25 2.37 0.00 2.78
4807 10817 3.133901 TGCACCTCTACAGTTCAGTGAAA 59.866 43.478 7.25 0.00 0.00 2.69
4808 10818 2.698274 TGCACCTCTACAGTTCAGTGAA 59.302 45.455 0.08 0.08 0.00 3.18
4809 10819 2.316108 TGCACCTCTACAGTTCAGTGA 58.684 47.619 0.00 0.00 0.00 3.41
4810 10820 2.820059 TGCACCTCTACAGTTCAGTG 57.180 50.000 0.00 0.00 0.00 3.66
4811 10821 4.357918 AAATGCACCTCTACAGTTCAGT 57.642 40.909 0.00 0.00 0.00 3.41
4812 10822 4.154918 GGAAAATGCACCTCTACAGTTCAG 59.845 45.833 0.00 0.00 0.00 3.02
4813 10823 4.072131 GGAAAATGCACCTCTACAGTTCA 58.928 43.478 0.00 0.00 0.00 3.18
4814 10824 4.154918 CAGGAAAATGCACCTCTACAGTTC 59.845 45.833 0.00 0.00 33.91 3.01
4815 10825 4.074970 CAGGAAAATGCACCTCTACAGTT 58.925 43.478 0.00 0.00 33.91 3.16
4816 10826 3.073062 ACAGGAAAATGCACCTCTACAGT 59.927 43.478 0.00 0.00 33.91 3.55
4817 10827 3.679389 ACAGGAAAATGCACCTCTACAG 58.321 45.455 0.00 0.00 33.91 2.74
4818 10828 3.327757 AGACAGGAAAATGCACCTCTACA 59.672 43.478 0.00 0.00 33.91 2.74
4819 10829 3.686726 CAGACAGGAAAATGCACCTCTAC 59.313 47.826 0.00 0.00 33.91 2.59
4820 10830 3.582647 TCAGACAGGAAAATGCACCTCTA 59.417 43.478 0.00 0.00 33.91 2.43
4821 10831 2.373169 TCAGACAGGAAAATGCACCTCT 59.627 45.455 0.00 0.00 33.91 3.69
4822 10832 2.783135 TCAGACAGGAAAATGCACCTC 58.217 47.619 0.00 0.00 33.91 3.85
4823 10833 2.957402 TCAGACAGGAAAATGCACCT 57.043 45.000 0.00 0.00 36.92 4.00
4824 10834 2.887152 ACTTCAGACAGGAAAATGCACC 59.113 45.455 0.00 0.00 0.00 5.01
4825 10835 3.854784 GCACTTCAGACAGGAAAATGCAC 60.855 47.826 0.00 0.00 38.17 4.57
4826 10836 2.294233 GCACTTCAGACAGGAAAATGCA 59.706 45.455 0.00 0.00 38.17 3.96
4827 10837 2.555757 AGCACTTCAGACAGGAAAATGC 59.444 45.455 0.00 0.00 38.39 3.56
4828 10838 6.506500 AATAGCACTTCAGACAGGAAAATG 57.493 37.500 0.00 0.00 0.00 2.32
4829 10839 7.014615 ACAAAATAGCACTTCAGACAGGAAAAT 59.985 33.333 0.00 0.00 0.00 1.82
4830 10840 6.321181 ACAAAATAGCACTTCAGACAGGAAAA 59.679 34.615 0.00 0.00 0.00 2.29
4831 10841 5.827797 ACAAAATAGCACTTCAGACAGGAAA 59.172 36.000 0.00 0.00 0.00 3.13
4832 10842 5.376625 ACAAAATAGCACTTCAGACAGGAA 58.623 37.500 0.00 0.00 0.00 3.36
4833 10843 4.973168 ACAAAATAGCACTTCAGACAGGA 58.027 39.130 0.00 0.00 0.00 3.86
4834 10844 5.695851 AACAAAATAGCACTTCAGACAGG 57.304 39.130 0.00 0.00 0.00 4.00
4835 10845 7.171508 TGTCTAACAAAATAGCACTTCAGACAG 59.828 37.037 0.00 0.00 35.14 3.51
4836 10846 6.989759 TGTCTAACAAAATAGCACTTCAGACA 59.010 34.615 0.00 0.00 37.07 3.41
4837 10847 7.421530 TGTCTAACAAAATAGCACTTCAGAC 57.578 36.000 0.00 0.00 0.00 3.51
4838 10848 8.621532 AATGTCTAACAAAATAGCACTTCAGA 57.378 30.769 0.00 0.00 0.00 3.27
4839 10849 7.965107 GGAATGTCTAACAAAATAGCACTTCAG 59.035 37.037 0.00 0.00 0.00 3.02
4840 10850 7.665559 AGGAATGTCTAACAAAATAGCACTTCA 59.334 33.333 0.00 0.00 0.00 3.02
4841 10851 8.045176 AGGAATGTCTAACAAAATAGCACTTC 57.955 34.615 0.00 0.00 0.00 3.01
4842 10852 7.148407 CGAGGAATGTCTAACAAAATAGCACTT 60.148 37.037 0.00 0.00 0.00 3.16
4843 10853 6.313905 CGAGGAATGTCTAACAAAATAGCACT 59.686 38.462 0.00 0.00 0.00 4.40
4844 10854 6.478588 CGAGGAATGTCTAACAAAATAGCAC 58.521 40.000 0.00 0.00 0.00 4.40
4845 10855 5.064707 GCGAGGAATGTCTAACAAAATAGCA 59.935 40.000 0.00 0.00 0.00 3.49
4846 10856 5.502606 GCGAGGAATGTCTAACAAAATAGC 58.497 41.667 0.00 0.00 0.00 2.97
4847 10857 5.728255 CGCGAGGAATGTCTAACAAAATAG 58.272 41.667 0.00 0.00 0.00 1.73
4848 10858 4.033587 GCGCGAGGAATGTCTAACAAAATA 59.966 41.667 12.10 0.00 0.00 1.40
4849 10859 3.181510 GCGCGAGGAATGTCTAACAAAAT 60.182 43.478 12.10 0.00 0.00 1.82
4850 10860 2.158841 GCGCGAGGAATGTCTAACAAAA 59.841 45.455 12.10 0.00 0.00 2.44
4851 10861 1.730064 GCGCGAGGAATGTCTAACAAA 59.270 47.619 12.10 0.00 0.00 2.83
4852 10862 1.067142 AGCGCGAGGAATGTCTAACAA 60.067 47.619 12.10 0.00 0.00 2.83
4853 10863 0.530744 AGCGCGAGGAATGTCTAACA 59.469 50.000 12.10 0.00 0.00 2.41
4854 10864 2.486951 TAGCGCGAGGAATGTCTAAC 57.513 50.000 12.10 0.00 0.00 2.34
4855 10865 3.364664 CGTATAGCGCGAGGAATGTCTAA 60.365 47.826 12.10 0.00 0.00 2.10
4856 10866 2.159037 CGTATAGCGCGAGGAATGTCTA 59.841 50.000 12.10 0.00 0.00 2.59
4857 10867 1.069159 CGTATAGCGCGAGGAATGTCT 60.069 52.381 12.10 0.00 0.00 3.41
4858 10868 1.328439 CGTATAGCGCGAGGAATGTC 58.672 55.000 12.10 0.00 0.00 3.06
4859 10869 3.474007 CGTATAGCGCGAGGAATGT 57.526 52.632 12.10 0.00 0.00 2.71
4871 10881 6.422776 AGAACCAAAATTGACAGCGTATAG 57.577 37.500 0.00 0.00 0.00 1.31
4872 10882 6.811253 AAGAACCAAAATTGACAGCGTATA 57.189 33.333 0.00 0.00 0.00 1.47
4873 10883 5.705609 AAGAACCAAAATTGACAGCGTAT 57.294 34.783 0.00 0.00 0.00 3.06
4874 10884 5.506649 GGAAAGAACCAAAATTGACAGCGTA 60.507 40.000 0.00 0.00 0.00 4.42
4875 10885 4.359706 GAAAGAACCAAAATTGACAGCGT 58.640 39.130 0.00 0.00 0.00 5.07
4876 10886 3.735746 GGAAAGAACCAAAATTGACAGCG 59.264 43.478 0.00 0.00 0.00 5.18
4917 10927 1.272203 ACCCGCAATATTTGACACCCA 60.272 47.619 0.00 0.00 0.00 4.51
4934 10944 9.816354 ATATTAGATGTTTAAATGTGCAAACCC 57.184 29.630 0.00 0.00 34.44 4.11
4979 10989 0.462759 CCGAGTTTCCTGATGCTCCC 60.463 60.000 0.00 0.00 0.00 4.30
4999 11009 1.032014 GGAAGCAAAAGTCACAGCCA 58.968 50.000 0.00 0.00 0.00 4.75
5012 11022 2.034066 CAGGAAAGCCGGGAAGCA 59.966 61.111 2.18 0.00 39.96 3.91
5017 11027 1.474077 CTGAATTTCAGGAAAGCCGGG 59.526 52.381 17.09 0.00 40.71 5.73
5043 11053 4.836125 TGAATTGCAGAGTCAAGGAAAC 57.164 40.909 0.00 0.00 27.74 2.78
5061 11071 7.872483 GCATCCTTACTTTTCCAAATTCTTGAA 59.128 33.333 0.00 0.00 34.14 2.69
5073 11083 3.501950 CAAAGCCGCATCCTTACTTTTC 58.498 45.455 0.00 0.00 0.00 2.29
5084 11094 1.588082 CAGAAAGCCAAAGCCGCAT 59.412 52.632 0.00 0.00 41.25 4.73
5122 11132 0.105224 TTGCCGAGTCGAGGAAACAA 59.895 50.000 15.64 5.64 0.00 2.83
5130 11140 1.250328 TTCCTAACTTGCCGAGTCGA 58.750 50.000 15.64 0.00 37.72 4.20
5132 11142 3.062234 CGAATTTCCTAACTTGCCGAGTC 59.938 47.826 0.00 0.00 37.72 3.36
5137 11147 3.695816 GCATCGAATTTCCTAACTTGCC 58.304 45.455 0.00 0.00 0.00 4.52
5140 11150 5.175859 TCTTCGCATCGAATTTCCTAACTT 58.824 37.500 1.99 0.00 44.85 2.66
5141 11151 4.755411 TCTTCGCATCGAATTTCCTAACT 58.245 39.130 1.99 0.00 44.85 2.24
5159 11169 0.320771 TCAGCCAAGGTCGCTTCTTC 60.321 55.000 0.00 0.00 33.17 2.87
5191 11205 5.182950 CCCTTGCATGAAACATGTGTAACTA 59.817 40.000 0.00 0.00 38.04 2.24
5216 11230 5.276270 CAAAGACATAATCAAATCTGGCGG 58.724 41.667 0.00 0.00 0.00 6.13
5219 11233 6.460676 GGCTCCAAAGACATAATCAAATCTGG 60.461 42.308 0.00 0.00 0.00 3.86
5223 11237 5.361857 CCTGGCTCCAAAGACATAATCAAAT 59.638 40.000 0.00 0.00 40.69 2.32
5231 11245 2.731572 CATTCCTGGCTCCAAAGACAT 58.268 47.619 0.00 0.00 40.69 3.06
5233 11247 0.813821 GCATTCCTGGCTCCAAAGAC 59.186 55.000 0.00 0.00 0.00 3.01
5234 11248 0.323725 GGCATTCCTGGCTCCAAAGA 60.324 55.000 0.00 0.00 44.27 2.52
5246 11260 2.485038 CCTGCAAAACATTTGGCATTCC 59.515 45.455 6.87 0.00 45.38 3.01
5252 11266 5.295950 TGTGAATACCTGCAAAACATTTGG 58.704 37.500 5.12 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.