Multiple sequence alignment - TraesCS2D01G066300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G066300 chr2D 100.000 5294 0 0 1 5294 27954297 27949004 0.000000e+00 9777.0
1 TraesCS2D01G066300 chr2D 89.256 3388 328 16 933 4306 27995545 27992180 0.000000e+00 4207.0
2 TraesCS2D01G066300 chr2D 86.888 3348 390 27 988 4309 27982195 27978871 0.000000e+00 3705.0
3 TraesCS2D01G066300 chr2D 85.351 3304 407 44 599 3872 27935872 27932616 0.000000e+00 3349.0
4 TraesCS2D01G066300 chr2D 87.829 2432 205 36 178 2558 27968252 27965861 0.000000e+00 2767.0
5 TraesCS2D01G066300 chr2D 88.749 1591 163 9 2688 4277 27965862 27964287 0.000000e+00 1932.0
6 TraesCS2D01G066300 chr2D 85.155 485 48 16 4630 5098 27991855 27991379 4.800000e-130 475.0
7 TraesCS2D01G066300 chr2D 86.905 84 11 0 763 846 27995671 27995588 1.570000e-15 95.3
8 TraesCS2D01G066300 chr2A 91.956 4227 270 34 132 4308 30179951 30175745 0.000000e+00 5858.0
9 TraesCS2D01G066300 chr2A 84.178 3672 502 45 665 4309 30171123 30167504 0.000000e+00 3489.0
10 TraesCS2D01G066300 chr2A 88.819 2218 222 7 1394 3598 30157762 30155558 0.000000e+00 2699.0
11 TraesCS2D01G066300 chr2A 90.876 274 17 5 4831 5098 30173934 30173663 1.400000e-95 361.0
12 TraesCS2D01G066300 chr2A 82.488 217 30 5 4630 4838 30175125 30174909 3.260000e-42 183.0
13 TraesCS2D01G066300 chr2A 96.667 90 3 0 4545 4634 20825026 20824937 3.300000e-32 150.0
14 TraesCS2D01G066300 chr2B 87.553 4025 438 28 310 4306 45549339 45553328 0.000000e+00 4599.0
15 TraesCS2D01G066300 chr2B 90.119 3532 295 32 798 4308 45672378 45675876 0.000000e+00 4540.0
16 TraesCS2D01G066300 chr2B 89.972 3530 310 28 798 4308 44746113 44742609 0.000000e+00 4518.0
17 TraesCS2D01G066300 chr2B 84.623 1990 279 19 933 2905 44435193 44433214 0.000000e+00 1954.0
18 TraesCS2D01G066300 chr2B 84.576 1971 257 23 2321 4277 45679788 45681725 0.000000e+00 1912.0
19 TraesCS2D01G066300 chr2B 81.188 1010 143 31 3527 4506 44433206 44432214 0.000000e+00 769.0
20 TraesCS2D01G066300 chr2B 83.716 479 59 13 4637 5097 45676197 45676674 8.140000e-118 435.0
21 TraesCS2D01G066300 chr2B 94.348 230 13 0 4311 4540 45675955 45676184 2.350000e-93 353.0
22 TraesCS2D01G066300 chr2B 93.450 229 13 2 4312 4540 44742508 44742282 6.570000e-89 339.0
23 TraesCS2D01G066300 chr2B 80.156 257 37 8 234 487 44746906 44746661 4.210000e-41 180.0
24 TraesCS2D01G066300 chr2B 92.157 102 7 1 4547 4647 483512888 483512989 5.530000e-30 143.0
25 TraesCS2D01G066300 chr1A 93.367 196 13 0 5099 5294 18779782 18779587 1.870000e-74 291.0
26 TraesCS2D01G066300 chr1A 89.552 201 16 2 5099 5294 110292928 110293128 3.170000e-62 250.0
27 TraesCS2D01G066300 chr1A 92.105 114 9 0 5181 5294 18944096 18943983 1.530000e-35 161.0
28 TraesCS2D01G066300 chr1A 92.105 114 9 0 5181 5294 19041744 19041631 1.530000e-35 161.0
29 TraesCS2D01G066300 chr1A 91.228 114 10 0 5181 5294 18861702 18861589 7.100000e-34 156.0
30 TraesCS2D01G066300 chrUn 90.141 213 4 1 5099 5294 305117968 305118180 1.460000e-65 261.0
31 TraesCS2D01G066300 chr7D 90.141 213 4 1 5099 5294 597719555 597719343 1.460000e-65 261.0
32 TraesCS2D01G066300 chr6A 89.767 215 5 1 5097 5294 128945323 128945109 5.260000e-65 259.0
33 TraesCS2D01G066300 chr6A 88.018 217 9 1 5094 5293 507804167 507804383 1.910000e-59 241.0
34 TraesCS2D01G066300 chr1D 87.168 226 10 7 5087 5294 353229140 353229364 6.850000e-59 239.0
35 TraesCS2D01G066300 chr5D 85.778 225 13 7 5086 5291 448108258 448108482 2.480000e-53 220.0
36 TraesCS2D01G066300 chr5D 95.699 93 4 0 4540 4632 483518187 483518279 3.300000e-32 150.0
37 TraesCS2D01G066300 chr7A 84.783 230 16 8 5084 5294 47387554 47387783 4.150000e-51 213.0
38 TraesCS2D01G066300 chr7A 95.745 94 4 0 4547 4640 80994166 80994073 9.180000e-33 152.0
39 TraesCS2D01G066300 chr6D 86.139 202 22 2 5099 5294 435225981 435226182 4.150000e-51 213.0
40 TraesCS2D01G066300 chr3B 84.649 228 16 6 5083 5293 8668361 8668586 5.370000e-50 209.0
41 TraesCS2D01G066300 chr3B 84.685 222 16 6 5089 5293 690276975 690276755 6.950000e-49 206.0
42 TraesCS2D01G066300 chr4D 97.674 86 2 0 4547 4632 62309498 62309583 1.190000e-31 148.0
43 TraesCS2D01G066300 chr4D 89.286 112 9 3 4525 4635 61961165 61961274 2.570000e-28 137.0
44 TraesCS2D01G066300 chr4B 94.737 95 5 0 4547 4641 136939875 136939781 1.190000e-31 148.0
45 TraesCS2D01G066300 chr7B 93.069 101 6 1 4547 4646 622831123 622831023 4.270000e-31 147.0
46 TraesCS2D01G066300 chr5A 90.909 110 6 4 4534 4640 328936685 328936577 1.540000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G066300 chr2D 27949004 27954297 5293 True 9777.000000 9777 100.000000 1 5294 1 chr2D.!!$R2 5293
1 TraesCS2D01G066300 chr2D 27978871 27982195 3324 True 3705.000000 3705 86.888000 988 4309 1 chr2D.!!$R3 3321
2 TraesCS2D01G066300 chr2D 27932616 27935872 3256 True 3349.000000 3349 85.351000 599 3872 1 chr2D.!!$R1 3273
3 TraesCS2D01G066300 chr2D 27964287 27968252 3965 True 2349.500000 2767 88.289000 178 4277 2 chr2D.!!$R4 4099
4 TraesCS2D01G066300 chr2D 27991379 27995671 4292 True 1592.433333 4207 87.105333 763 5098 3 chr2D.!!$R5 4335
5 TraesCS2D01G066300 chr2A 30155558 30157762 2204 True 2699.000000 2699 88.819000 1394 3598 1 chr2A.!!$R2 2204
6 TraesCS2D01G066300 chr2A 30167504 30179951 12447 True 2472.750000 5858 87.374500 132 5098 4 chr2A.!!$R3 4966
7 TraesCS2D01G066300 chr2B 45549339 45553328 3989 False 4599.000000 4599 87.553000 310 4306 1 chr2B.!!$F1 3996
8 TraesCS2D01G066300 chr2B 45672378 45681725 9347 False 1810.000000 4540 88.189750 798 5097 4 chr2B.!!$F3 4299
9 TraesCS2D01G066300 chr2B 44742282 44746906 4624 True 1679.000000 4518 87.859333 234 4540 3 chr2B.!!$R2 4306
10 TraesCS2D01G066300 chr2B 44432214 44435193 2979 True 1361.500000 1954 82.905500 933 4506 2 chr2B.!!$R1 3573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.101399 CTACTGCTAGGGCGTGACTG 59.899 60.0 0.00 0.00 42.25 3.51 F
80 81 0.176680 CTGCTAGGGCGTGACTGAAT 59.823 55.0 0.00 0.00 42.25 2.57 F
126 127 0.244994 TCAAGTTCGAGAGAGGCAGC 59.755 55.0 0.00 0.00 43.69 5.25 F
1214 1647 0.302890 GTTCTTCGATCATGGCGCAG 59.697 55.0 10.83 0.00 0.00 5.18 F
2512 2951 0.832135 TCTTCCTCAACTCGGCCAGT 60.832 55.0 2.24 2.32 36.64 4.00 F
3405 3862 0.108804 TTAGCGAGCAAGGTTCGAGG 60.109 55.0 6.66 0.00 40.36 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1040 1473 0.036732 GAAGAGTGCATGGTGGGACA 59.963 55.000 0.00 0.0 0.00 4.02 R
1214 1647 0.947244 CCAGCCACAGAAGTTGTCAC 59.053 55.000 0.00 0.0 38.16 3.67 R
1271 1710 1.293498 CTGAGTTGGAGGGACACGG 59.707 63.158 0.00 0.0 0.00 4.94 R
3083 3528 0.618680 TGATGAGGTGGTGGGAGAGG 60.619 60.000 0.00 0.0 0.00 3.69 R
4113 4582 1.203174 TCCTCCTCGGATGGCATATGA 60.203 52.381 6.97 0.0 36.69 2.15 R
4746 5668 0.671796 ACACGTCGTCCATCAGAACA 59.328 50.000 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.095685 CTTTGTGCTCGAATTCGTCAG 57.904 47.619 25.93 18.16 40.80 3.51
21 22 2.432206 TTGTGCTCGAATTCGTCAGA 57.568 45.000 25.93 19.48 40.80 3.27
22 23 1.982612 TGTGCTCGAATTCGTCAGAG 58.017 50.000 25.93 17.14 40.80 3.35
23 24 1.269723 TGTGCTCGAATTCGTCAGAGT 59.730 47.619 25.93 0.00 40.80 3.24
24 25 2.288213 TGTGCTCGAATTCGTCAGAGTT 60.288 45.455 25.93 0.00 40.80 3.01
25 26 2.091277 GTGCTCGAATTCGTCAGAGTTG 59.909 50.000 25.93 9.29 40.80 3.16
26 27 2.030274 TGCTCGAATTCGTCAGAGTTGA 60.030 45.455 25.93 3.96 40.80 3.18
40 41 6.510879 TCAGAGTTGACTACGTGATAATGT 57.489 37.500 0.00 0.00 0.00 2.71
41 42 6.322491 TCAGAGTTGACTACGTGATAATGTG 58.678 40.000 0.00 0.00 0.00 3.21
42 43 6.150474 TCAGAGTTGACTACGTGATAATGTGA 59.850 38.462 0.00 0.00 0.00 3.58
43 44 6.975197 CAGAGTTGACTACGTGATAATGTGAT 59.025 38.462 0.00 0.00 0.00 3.06
44 45 7.489435 CAGAGTTGACTACGTGATAATGTGATT 59.511 37.037 0.00 0.00 0.00 2.57
45 46 8.035394 AGAGTTGACTACGTGATAATGTGATTT 58.965 33.333 0.00 0.00 0.00 2.17
46 47 7.963981 AGTTGACTACGTGATAATGTGATTTG 58.036 34.615 0.00 0.00 0.00 2.32
47 48 7.602644 AGTTGACTACGTGATAATGTGATTTGT 59.397 33.333 0.00 0.00 0.00 2.83
48 49 7.289587 TGACTACGTGATAATGTGATTTGTG 57.710 36.000 0.00 0.00 0.00 3.33
49 50 6.106877 ACTACGTGATAATGTGATTTGTGC 57.893 37.500 0.00 0.00 0.00 4.57
50 51 5.874810 ACTACGTGATAATGTGATTTGTGCT 59.125 36.000 0.00 0.00 0.00 4.40
51 52 5.627499 ACGTGATAATGTGATTTGTGCTT 57.373 34.783 0.00 0.00 0.00 3.91
52 53 5.393124 ACGTGATAATGTGATTTGTGCTTG 58.607 37.500 0.00 0.00 0.00 4.01
53 54 5.181056 ACGTGATAATGTGATTTGTGCTTGA 59.819 36.000 0.00 0.00 0.00 3.02
54 55 5.509272 CGTGATAATGTGATTTGTGCTTGAC 59.491 40.000 0.00 0.00 0.00 3.18
55 56 5.801947 GTGATAATGTGATTTGTGCTTGACC 59.198 40.000 0.00 0.00 0.00 4.02
56 57 5.711506 TGATAATGTGATTTGTGCTTGACCT 59.288 36.000 0.00 0.00 0.00 3.85
57 58 3.928727 ATGTGATTTGTGCTTGACCTG 57.071 42.857 0.00 0.00 0.00 4.00
58 59 1.337703 TGTGATTTGTGCTTGACCTGC 59.662 47.619 0.00 0.00 0.00 4.85
59 60 1.610522 GTGATTTGTGCTTGACCTGCT 59.389 47.619 0.00 0.00 0.00 4.24
60 61 2.813754 GTGATTTGTGCTTGACCTGCTA 59.186 45.455 0.00 0.00 0.00 3.49
61 62 2.813754 TGATTTGTGCTTGACCTGCTAC 59.186 45.455 0.00 0.00 0.00 3.58
62 63 2.638480 TTTGTGCTTGACCTGCTACT 57.362 45.000 0.00 0.00 0.00 2.57
63 64 1.882912 TTGTGCTTGACCTGCTACTG 58.117 50.000 0.00 0.00 0.00 2.74
64 65 0.603707 TGTGCTTGACCTGCTACTGC 60.604 55.000 0.00 0.00 40.20 4.40
65 66 0.321122 GTGCTTGACCTGCTACTGCT 60.321 55.000 0.00 0.00 40.48 4.24
66 67 1.066858 GTGCTTGACCTGCTACTGCTA 60.067 52.381 0.00 0.00 40.48 3.49
67 68 1.205655 TGCTTGACCTGCTACTGCTAG 59.794 52.381 0.00 0.00 40.48 3.42
68 69 1.472376 GCTTGACCTGCTACTGCTAGG 60.472 57.143 0.00 0.00 40.69 3.02
69 70 1.137872 CTTGACCTGCTACTGCTAGGG 59.862 57.143 0.00 0.00 39.85 3.53
70 71 1.330655 TGACCTGCTACTGCTAGGGC 61.331 60.000 0.00 0.00 42.20 5.19
71 72 2.356818 GACCTGCTACTGCTAGGGCG 62.357 65.000 0.00 0.00 39.85 6.13
72 73 2.427245 CCTGCTACTGCTAGGGCGT 61.427 63.158 0.00 0.00 42.25 5.68
73 74 1.227089 CTGCTACTGCTAGGGCGTG 60.227 63.158 0.00 0.00 42.25 5.34
74 75 1.667154 CTGCTACTGCTAGGGCGTGA 61.667 60.000 0.00 0.00 42.25 4.35
75 76 1.227002 GCTACTGCTAGGGCGTGAC 60.227 63.158 0.00 0.00 42.25 3.67
76 77 1.668101 GCTACTGCTAGGGCGTGACT 61.668 60.000 0.00 0.00 42.25 3.41
77 78 0.101399 CTACTGCTAGGGCGTGACTG 59.899 60.000 0.00 0.00 42.25 3.51
78 79 0.323087 TACTGCTAGGGCGTGACTGA 60.323 55.000 0.00 0.00 42.25 3.41
79 80 1.185618 ACTGCTAGGGCGTGACTGAA 61.186 55.000 0.00 0.00 42.25 3.02
80 81 0.176680 CTGCTAGGGCGTGACTGAAT 59.823 55.000 0.00 0.00 42.25 2.57
81 82 0.613260 TGCTAGGGCGTGACTGAATT 59.387 50.000 0.00 0.00 42.25 2.17
82 83 1.003118 TGCTAGGGCGTGACTGAATTT 59.997 47.619 0.00 0.00 42.25 1.82
83 84 1.666189 GCTAGGGCGTGACTGAATTTC 59.334 52.381 0.00 0.00 0.00 2.17
84 85 2.280628 CTAGGGCGTGACTGAATTTCC 58.719 52.381 0.00 0.00 0.00 3.13
85 86 0.322546 AGGGCGTGACTGAATTTCCC 60.323 55.000 0.00 0.00 0.00 3.97
86 87 1.644786 GGGCGTGACTGAATTTCCCG 61.645 60.000 0.00 0.00 0.00 5.14
87 88 0.672401 GGCGTGACTGAATTTCCCGA 60.672 55.000 0.00 0.00 0.00 5.14
88 89 0.442699 GCGTGACTGAATTTCCCGAC 59.557 55.000 0.00 0.00 0.00 4.79
89 90 1.939838 GCGTGACTGAATTTCCCGACT 60.940 52.381 0.00 0.00 0.00 4.18
90 91 1.726791 CGTGACTGAATTTCCCGACTG 59.273 52.381 0.00 0.00 0.00 3.51
91 92 2.609491 CGTGACTGAATTTCCCGACTGA 60.609 50.000 0.00 0.00 0.00 3.41
92 93 3.399330 GTGACTGAATTTCCCGACTGAA 58.601 45.455 0.00 0.00 0.00 3.02
93 94 3.813166 GTGACTGAATTTCCCGACTGAAA 59.187 43.478 0.00 0.00 38.51 2.69
94 95 4.274950 GTGACTGAATTTCCCGACTGAAAA 59.725 41.667 0.00 0.00 37.74 2.29
95 96 4.884744 TGACTGAATTTCCCGACTGAAAAA 59.115 37.500 0.00 0.00 37.74 1.94
96 97 5.534654 TGACTGAATTTCCCGACTGAAAAAT 59.465 36.000 0.00 0.00 37.74 1.82
97 98 6.040391 TGACTGAATTTCCCGACTGAAAAATT 59.960 34.615 0.00 0.00 37.74 1.82
98 99 6.447162 ACTGAATTTCCCGACTGAAAAATTC 58.553 36.000 10.82 10.82 43.48 2.17
99 100 5.457140 TGAATTTCCCGACTGAAAAATTCG 58.543 37.500 12.23 0.00 44.93 3.34
100 101 5.009210 TGAATTTCCCGACTGAAAAATTCGT 59.991 36.000 12.23 0.00 44.93 3.85
101 102 4.904253 TTTCCCGACTGAAAAATTCGTT 57.096 36.364 0.00 0.00 31.56 3.85
102 103 6.563222 ATTTCCCGACTGAAAAATTCGTTA 57.437 33.333 0.00 0.00 37.74 3.18
103 104 6.374565 TTTCCCGACTGAAAAATTCGTTAA 57.625 33.333 0.00 0.00 31.56 2.01
104 105 6.374565 TTCCCGACTGAAAAATTCGTTAAA 57.625 33.333 0.00 0.00 0.00 1.52
105 106 5.992729 TCCCGACTGAAAAATTCGTTAAAG 58.007 37.500 0.00 0.00 0.00 1.85
106 107 5.049267 TCCCGACTGAAAAATTCGTTAAAGG 60.049 40.000 0.00 0.00 0.00 3.11
107 108 5.278120 CCCGACTGAAAAATTCGTTAAAGGT 60.278 40.000 0.00 0.00 0.00 3.50
108 109 5.849604 CCGACTGAAAAATTCGTTAAAGGTC 59.150 40.000 0.00 0.00 0.00 3.85
109 110 6.423862 CGACTGAAAAATTCGTTAAAGGTCA 58.576 36.000 0.00 0.00 0.00 4.02
110 111 6.908284 CGACTGAAAAATTCGTTAAAGGTCAA 59.092 34.615 0.00 0.00 0.00 3.18
111 112 7.111593 CGACTGAAAAATTCGTTAAAGGTCAAG 59.888 37.037 0.00 0.00 0.00 3.02
112 113 7.768240 ACTGAAAAATTCGTTAAAGGTCAAGT 58.232 30.769 0.00 0.00 0.00 3.16
113 114 8.248253 ACTGAAAAATTCGTTAAAGGTCAAGTT 58.752 29.630 0.00 0.00 0.00 2.66
114 115 8.623310 TGAAAAATTCGTTAAAGGTCAAGTTC 57.377 30.769 0.00 0.00 0.00 3.01
115 116 7.429920 TGAAAAATTCGTTAAAGGTCAAGTTCG 59.570 33.333 0.00 0.00 0.00 3.95
116 117 6.607735 AAATTCGTTAAAGGTCAAGTTCGA 57.392 33.333 0.00 0.00 0.00 3.71
117 118 5.840940 ATTCGTTAAAGGTCAAGTTCGAG 57.159 39.130 0.00 0.00 0.00 4.04
118 119 4.572985 TCGTTAAAGGTCAAGTTCGAGA 57.427 40.909 0.00 0.00 0.00 4.04
119 120 4.543692 TCGTTAAAGGTCAAGTTCGAGAG 58.456 43.478 0.00 0.00 0.00 3.20
120 121 4.276678 TCGTTAAAGGTCAAGTTCGAGAGA 59.723 41.667 0.00 0.00 39.20 3.10
121 122 4.617645 CGTTAAAGGTCAAGTTCGAGAGAG 59.382 45.833 0.00 0.00 43.69 3.20
122 123 3.669251 AAAGGTCAAGTTCGAGAGAGG 57.331 47.619 0.00 0.00 43.69 3.69
123 124 0.892063 AGGTCAAGTTCGAGAGAGGC 59.108 55.000 0.00 0.00 43.69 4.70
124 125 0.603569 GGTCAAGTTCGAGAGAGGCA 59.396 55.000 0.00 0.00 43.69 4.75
125 126 1.403514 GGTCAAGTTCGAGAGAGGCAG 60.404 57.143 0.00 0.00 43.69 4.85
126 127 0.244994 TCAAGTTCGAGAGAGGCAGC 59.755 55.000 0.00 0.00 43.69 5.25
127 128 0.739112 CAAGTTCGAGAGAGGCAGCC 60.739 60.000 1.84 1.84 43.69 4.85
128 129 2.202676 GTTCGAGAGAGGCAGCCG 60.203 66.667 5.55 0.00 43.69 5.52
129 130 4.135153 TTCGAGAGAGGCAGCCGC 62.135 66.667 7.17 7.17 43.69 6.53
158 159 1.272092 CCATGGCAGGTGAAGGAGAAA 60.272 52.381 0.00 0.00 0.00 2.52
169 170 4.588951 GGTGAAGGAGAAAAGGTGGATTTT 59.411 41.667 0.00 0.00 35.12 1.82
170 171 5.509670 GGTGAAGGAGAAAAGGTGGATTTTG 60.510 44.000 0.00 0.00 32.62 2.44
171 172 5.301805 GTGAAGGAGAAAAGGTGGATTTTGA 59.698 40.000 0.00 0.00 32.62 2.69
172 173 5.536161 TGAAGGAGAAAAGGTGGATTTTGAG 59.464 40.000 0.00 0.00 32.62 3.02
173 174 5.324832 AGGAGAAAAGGTGGATTTTGAGA 57.675 39.130 0.00 0.00 32.62 3.27
174 175 5.896963 AGGAGAAAAGGTGGATTTTGAGAT 58.103 37.500 0.00 0.00 32.62 2.75
175 176 5.713861 AGGAGAAAAGGTGGATTTTGAGATG 59.286 40.000 0.00 0.00 32.62 2.90
180 185 7.506938 AGAAAAGGTGGATTTTGAGATGAAGAA 59.493 33.333 0.00 0.00 32.62 2.52
255 274 4.876107 ACCTAACGCCTACAATTCAATCAG 59.124 41.667 0.00 0.00 0.00 2.90
256 275 4.273480 CCTAACGCCTACAATTCAATCAGG 59.727 45.833 0.00 0.00 0.00 3.86
258 277 4.481368 ACGCCTACAATTCAATCAGGTA 57.519 40.909 0.00 0.00 0.00 3.08
259 278 4.189231 ACGCCTACAATTCAATCAGGTAC 58.811 43.478 0.00 0.00 0.00 3.34
260 279 4.081087 ACGCCTACAATTCAATCAGGTACT 60.081 41.667 0.00 0.00 43.88 2.73
318 339 3.582780 CTTTTTGGCAGCCATCTCTTTC 58.417 45.455 17.09 0.00 31.53 2.62
320 341 1.830279 TTGGCAGCCATCTCTTTCAG 58.170 50.000 17.09 0.00 31.53 3.02
344 382 3.623848 CCAGATGGTTCGTGTGGAA 57.376 52.632 0.00 0.00 36.08 3.53
347 385 2.355108 CCAGATGGTTCGTGTGGAAGAT 60.355 50.000 0.00 0.00 36.08 2.40
387 425 2.886523 CTGGACCTTGACTGCAAAATGA 59.113 45.455 0.00 0.00 32.73 2.57
415 453 4.032960 TCAAGAATTAAGCTTCCTGCCA 57.967 40.909 0.00 0.00 44.23 4.92
417 455 5.018809 TCAAGAATTAAGCTTCCTGCCATT 58.981 37.500 0.00 0.00 44.23 3.16
431 471 2.355756 CTGCCATTACGACAAAGATGGG 59.644 50.000 0.00 0.00 39.51 4.00
434 474 1.014352 ATTACGACAAAGATGGGCGC 58.986 50.000 0.00 0.00 33.50 6.53
439 479 0.881118 GACAAAGATGGGCGCAGAAA 59.119 50.000 10.83 0.00 0.00 2.52
476 516 2.746362 GCTTCTTGTCCTTGATGACTGG 59.254 50.000 0.00 0.00 36.21 4.00
493 533 1.228552 GGCTTGGCACTTTGGAGGA 60.229 57.895 0.00 0.00 0.00 3.71
568 618 7.201548 CCAGAAAATTGGTTTCAAGAAACTGTG 60.202 37.037 21.07 11.21 46.98 3.66
627 695 3.540314 TGGTGGCAAATAAATGATGGC 57.460 42.857 0.00 0.00 39.81 4.40
661 734 5.001874 CCAACTTGTCCCCTTTTCTACTAC 58.998 45.833 0.00 0.00 0.00 2.73
663 736 6.296803 CAACTTGTCCCCTTTTCTACTACTT 58.703 40.000 0.00 0.00 0.00 2.24
669 742 5.657745 GTCCCCTTTTCTACTACTTAGCTCT 59.342 44.000 0.00 0.00 0.00 4.09
705 778 3.177228 CATTGGGTGGATTTTGGGGTAA 58.823 45.455 0.00 0.00 0.00 2.85
725 798 7.333323 GGGTAAAGAAGCTGTAGGTTGTATAA 58.667 38.462 0.45 0.00 35.69 0.98
726 799 7.279536 GGGTAAAGAAGCTGTAGGTTGTATAAC 59.720 40.741 0.45 0.00 35.69 1.89
772 853 6.483307 GCACTTTGATAGACTGGTATATGCAA 59.517 38.462 0.00 0.00 0.00 4.08
904 1316 7.606456 TGAAGTCAAAGTCAAGTACAAGTTTCT 59.394 33.333 0.00 0.00 0.00 2.52
913 1325 2.711547 AGTACAAGTTTCTGCTCCCCTT 59.288 45.455 0.00 0.00 0.00 3.95
916 1328 1.074566 CAAGTTTCTGCTCCCCTTCCT 59.925 52.381 0.00 0.00 0.00 3.36
918 1330 2.632537 AGTTTCTGCTCCCCTTCCTTA 58.367 47.619 0.00 0.00 0.00 2.69
921 1337 2.344093 TCTGCTCCCCTTCCTTACTT 57.656 50.000 0.00 0.00 0.00 2.24
924 1340 1.286248 GCTCCCCTTCCTTACTTCCA 58.714 55.000 0.00 0.00 0.00 3.53
925 1341 1.065345 GCTCCCCTTCCTTACTTCCAC 60.065 57.143 0.00 0.00 0.00 4.02
926 1342 2.266279 CTCCCCTTCCTTACTTCCACA 58.734 52.381 0.00 0.00 0.00 4.17
927 1343 2.846827 CTCCCCTTCCTTACTTCCACAT 59.153 50.000 0.00 0.00 0.00 3.21
928 1344 4.037927 CTCCCCTTCCTTACTTCCACATA 58.962 47.826 0.00 0.00 0.00 2.29
929 1345 4.641868 TCCCCTTCCTTACTTCCACATAT 58.358 43.478 0.00 0.00 0.00 1.78
930 1346 5.795079 TCCCCTTCCTTACTTCCACATATA 58.205 41.667 0.00 0.00 0.00 0.86
931 1347 6.399013 TCCCCTTCCTTACTTCCACATATAT 58.601 40.000 0.00 0.00 0.00 0.86
956 1372 1.566404 TCTAAGCACACACACACACG 58.434 50.000 0.00 0.00 0.00 4.49
959 1375 1.581727 AAGCACACACACACACGCAA 61.582 50.000 0.00 0.00 0.00 4.85
976 1403 7.973388 ACACACGCAAATATTTAATAAGCACAT 59.027 29.630 0.00 0.00 0.00 3.21
1040 1473 2.172293 GCACCCAATCTCTGATTCCTCT 59.828 50.000 0.00 0.00 0.00 3.69
1085 1518 5.508567 TCTTTGCACCATCCTCATATTTCA 58.491 37.500 0.00 0.00 0.00 2.69
1158 1591 0.326264 ATGACCGGCAAGCTCTTCTT 59.674 50.000 0.00 0.00 34.78 2.52
1214 1647 0.302890 GTTCTTCGATCATGGCGCAG 59.697 55.000 10.83 0.00 0.00 5.18
1227 1666 1.160329 GGCGCAGTGACAACTTCTGT 61.160 55.000 10.83 0.00 42.61 3.41
1454 1893 0.881796 GGCAACAGGCTTTCAGGTAC 59.118 55.000 0.00 0.00 44.01 3.34
1929 2368 3.182967 GTCATCACTCGCACTCTTTAGG 58.817 50.000 0.00 0.00 0.00 2.69
1934 2373 4.077108 TCACTCGCACTCTTTAGGTTAGA 58.923 43.478 0.00 0.00 0.00 2.10
1942 2381 5.542779 CACTCTTTAGGTTAGACAGCAACT 58.457 41.667 0.00 0.00 0.00 3.16
2173 2612 8.410673 AGGAGATAATAAACTCGAAGCTGATA 57.589 34.615 0.00 0.00 34.40 2.15
2491 2930 2.819608 CAGATTCCATCAACGGTTGGTT 59.180 45.455 19.91 6.26 40.22 3.67
2512 2951 0.832135 TCTTCCTCAACTCGGCCAGT 60.832 55.000 2.24 2.32 36.64 4.00
2531 2970 6.088824 GCCAGTTTTATCTTGATGACAACAG 58.911 40.000 0.00 0.00 32.27 3.16
2574 3013 5.711976 AGCAACTATAGGACAATGCAAAAGT 59.288 36.000 4.43 0.00 36.30 2.66
2579 3018 8.079211 ACTATAGGACAATGCAAAAGTCTAGA 57.921 34.615 13.83 0.00 32.98 2.43
2628 3073 5.148502 GGATCCATACCAAGAGAACTCCTA 58.851 45.833 6.95 0.00 0.00 2.94
2677 3122 3.428862 GGACTTGTCAAACAACAACCTGG 60.429 47.826 3.08 0.00 35.39 4.45
2786 3231 3.684305 TCTGAACTTGGCATGTGTATTCG 59.316 43.478 6.80 0.00 0.00 3.34
2791 3236 3.261580 CTTGGCATGTGTATTCGTCTGA 58.738 45.455 0.00 0.00 0.00 3.27
2792 3237 2.616960 TGGCATGTGTATTCGTCTGAC 58.383 47.619 0.00 0.00 0.00 3.51
2865 3310 1.744114 GCTGCACTAAGGGGCTTAGAC 60.744 57.143 0.00 0.00 44.24 2.59
3045 3490 6.370453 AGGTAACAAAGGGTTATGTGAAACT 58.630 36.000 0.00 0.00 43.50 2.66
3083 3528 0.321346 CTTCCCATTTGCCCAACCAC 59.679 55.000 0.00 0.00 0.00 4.16
3084 3529 1.124477 TTCCCATTTGCCCAACCACC 61.124 55.000 0.00 0.00 0.00 4.61
3085 3530 1.536174 CCCATTTGCCCAACCACCT 60.536 57.895 0.00 0.00 0.00 4.00
3086 3531 1.543944 CCCATTTGCCCAACCACCTC 61.544 60.000 0.00 0.00 0.00 3.85
3087 3532 0.542702 CCATTTGCCCAACCACCTCT 60.543 55.000 0.00 0.00 0.00 3.69
3088 3533 0.890683 CATTTGCCCAACCACCTCTC 59.109 55.000 0.00 0.00 0.00 3.20
3089 3534 0.251787 ATTTGCCCAACCACCTCTCC 60.252 55.000 0.00 0.00 0.00 3.71
3090 3535 2.366153 TTTGCCCAACCACCTCTCCC 62.366 60.000 0.00 0.00 0.00 4.30
3091 3536 3.256960 GCCCAACCACCTCTCCCA 61.257 66.667 0.00 0.00 0.00 4.37
3092 3537 2.757077 CCCAACCACCTCTCCCAC 59.243 66.667 0.00 0.00 0.00 4.61
3093 3538 2.757077 CCAACCACCTCTCCCACC 59.243 66.667 0.00 0.00 0.00 4.61
3094 3539 2.153401 CCAACCACCTCTCCCACCA 61.153 63.158 0.00 0.00 0.00 4.17
3100 3545 0.911525 CACCTCTCCCACCACCTCAT 60.912 60.000 0.00 0.00 0.00 2.90
3354 3811 2.312722 TTGGTCGGTTTGAGTTCGAA 57.687 45.000 0.00 0.00 34.62 3.71
3378 3835 2.224402 GGATCTAGTGGCCATCAAGGTC 60.224 54.545 9.72 12.55 44.53 3.85
3405 3862 0.108804 TTAGCGAGCAAGGTTCGAGG 60.109 55.000 6.66 0.00 40.36 4.63
3489 3946 0.470766 TTACCCTGTGCTCAACGGTT 59.529 50.000 11.28 0.00 32.74 4.44
3655 4118 1.667177 CCGCTCTGGACTATATGCACG 60.667 57.143 0.00 0.00 42.00 5.34
3660 4123 3.028130 TCTGGACTATATGCACGACCAA 58.972 45.455 0.00 0.00 0.00 3.67
3846 4311 4.793028 GCTCCTGGTAAGTTGCACTTTTTC 60.793 45.833 6.82 0.81 39.51 2.29
3874 4343 3.520290 TGAGACGACTGTTGAGTTTGT 57.480 42.857 1.15 0.00 30.16 2.83
4068 4537 0.250513 CCCTCAGCCTCCACAAGTAC 59.749 60.000 0.00 0.00 0.00 2.73
4113 4582 4.016444 GGATCGCTGAGATTCTAGATCCT 58.984 47.826 20.89 0.00 46.29 3.24
4318 4893 9.286946 GATTACGGCAACTAGTCATATATACAC 57.713 37.037 0.00 0.00 0.00 2.90
4508 5422 7.954788 AGCTTTGTTAAAACTTTGTTTCACA 57.045 28.000 0.00 1.27 0.00 3.58
4549 5470 7.665559 TGATTTTCTGAAATGCTACCAGTTACT 59.334 33.333 3.31 0.00 35.65 2.24
4550 5471 7.435068 TTTTCTGAAATGCTACCAGTTACTC 57.565 36.000 3.31 0.00 27.98 2.59
4551 5472 5.086104 TCTGAAATGCTACCAGTTACTCC 57.914 43.478 0.00 0.00 27.98 3.85
4552 5473 4.081087 TCTGAAATGCTACCAGTTACTCCC 60.081 45.833 0.00 0.00 27.98 4.30
4553 5474 3.844211 TGAAATGCTACCAGTTACTCCCT 59.156 43.478 0.00 0.00 27.98 4.20
4554 5475 4.081087 TGAAATGCTACCAGTTACTCCCTC 60.081 45.833 0.00 0.00 27.98 4.30
4555 5476 1.861982 TGCTACCAGTTACTCCCTCC 58.138 55.000 0.00 0.00 0.00 4.30
4556 5477 0.745468 GCTACCAGTTACTCCCTCCG 59.255 60.000 0.00 0.00 0.00 4.63
4557 5478 1.959028 GCTACCAGTTACTCCCTCCGT 60.959 57.143 0.00 0.00 0.00 4.69
4558 5479 2.684927 GCTACCAGTTACTCCCTCCGTA 60.685 54.545 0.00 0.00 0.00 4.02
4559 5480 2.610438 ACCAGTTACTCCCTCCGTAA 57.390 50.000 0.00 0.00 0.00 3.18
4560 5481 2.893424 ACCAGTTACTCCCTCCGTAAA 58.107 47.619 0.00 0.00 0.00 2.01
4561 5482 2.564504 ACCAGTTACTCCCTCCGTAAAC 59.435 50.000 0.00 0.00 0.00 2.01
4562 5483 2.830321 CCAGTTACTCCCTCCGTAAACT 59.170 50.000 0.00 0.00 0.00 2.66
4563 5484 4.019174 CCAGTTACTCCCTCCGTAAACTA 58.981 47.826 0.00 0.00 0.00 2.24
4564 5485 4.463891 CCAGTTACTCCCTCCGTAAACTAA 59.536 45.833 0.00 0.00 0.00 2.24
4565 5486 5.128335 CCAGTTACTCCCTCCGTAAACTAAT 59.872 44.000 0.00 0.00 0.00 1.73
4566 5487 6.322201 CCAGTTACTCCCTCCGTAAACTAATA 59.678 42.308 0.00 0.00 0.00 0.98
4567 5488 7.015001 CCAGTTACTCCCTCCGTAAACTAATAT 59.985 40.741 0.00 0.00 0.00 1.28
4568 5489 9.071276 CAGTTACTCCCTCCGTAAACTAATATA 57.929 37.037 0.00 0.00 0.00 0.86
4569 5490 9.646522 AGTTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
4570 5491 9.905171 GTTACTCCCTCCGTAAACTAATATAAG 57.095 37.037 0.00 0.00 0.00 1.73
4571 5492 9.866655 TTACTCCCTCCGTAAACTAATATAAGA 57.133 33.333 0.00 0.00 0.00 2.10
4572 5493 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4573 5494 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
4574 5495 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
4575 5496 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
4576 5497 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
4577 5498 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
4578 5499 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
4579 5500 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
4580 5501 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
4591 5512 5.899120 AGAGCGTTTAGATCACTACTTCA 57.101 39.130 0.00 0.00 37.82 3.02
4592 5513 5.885881 AGAGCGTTTAGATCACTACTTCAG 58.114 41.667 0.00 0.00 37.82 3.02
4593 5514 5.416326 AGAGCGTTTAGATCACTACTTCAGT 59.584 40.000 0.00 0.00 37.82 3.41
4605 5526 5.646577 ACTACTTCAGTGATCTAAACGCT 57.353 39.130 0.00 0.00 35.62 5.07
4606 5527 5.642686 ACTACTTCAGTGATCTAAACGCTC 58.357 41.667 0.00 0.00 35.62 5.03
4607 5528 4.792521 ACTTCAGTGATCTAAACGCTCT 57.207 40.909 0.00 0.00 0.00 4.09
4608 5529 5.140747 ACTTCAGTGATCTAAACGCTCTT 57.859 39.130 0.00 0.00 0.00 2.85
4609 5530 6.268825 ACTTCAGTGATCTAAACGCTCTTA 57.731 37.500 0.00 0.00 0.00 2.10
4610 5531 6.868622 ACTTCAGTGATCTAAACGCTCTTAT 58.131 36.000 0.00 0.00 0.00 1.73
4611 5532 7.997482 ACTTCAGTGATCTAAACGCTCTTATA 58.003 34.615 0.00 0.00 0.00 0.98
4612 5533 8.634444 ACTTCAGTGATCTAAACGCTCTTATAT 58.366 33.333 0.00 0.00 0.00 0.86
4613 5534 9.469807 CTTCAGTGATCTAAACGCTCTTATATT 57.530 33.333 0.00 0.00 0.00 1.28
4616 5537 9.900710 CAGTGATCTAAACGCTCTTATATTAGT 57.099 33.333 0.00 0.00 0.00 2.24
4625 5546 9.490379 AAACGCTCTTATATTAGTTTATGGAGG 57.510 33.333 0.00 0.00 31.14 4.30
4626 5547 7.612677 ACGCTCTTATATTAGTTTATGGAGGG 58.387 38.462 0.00 0.00 35.06 4.30
4627 5548 7.453752 ACGCTCTTATATTAGTTTATGGAGGGA 59.546 37.037 0.00 0.00 34.22 4.20
4628 5549 7.976734 CGCTCTTATATTAGTTTATGGAGGGAG 59.023 40.741 0.00 0.00 33.23 4.30
4629 5550 8.817876 GCTCTTATATTAGTTTATGGAGGGAGT 58.182 37.037 0.00 0.00 0.00 3.85
4674 5595 9.533253 GTTCTTGATTTGATTCTTCTTTTGGAA 57.467 29.630 0.00 0.00 0.00 3.53
4707 5628 4.988540 TCAAATACTGAAGGACACTCAACG 59.011 41.667 0.00 0.00 0.00 4.10
4738 5660 5.365619 CGGATAATTTAGCCACTAACCTGT 58.634 41.667 11.08 0.00 32.61 4.00
4746 5668 2.706190 AGCCACTAACCTGTCTCAAAGT 59.294 45.455 0.00 0.00 0.00 2.66
4748 5670 3.744530 GCCACTAACCTGTCTCAAAGTGT 60.745 47.826 0.00 0.00 34.02 3.55
4750 5672 4.511826 CCACTAACCTGTCTCAAAGTGTTC 59.488 45.833 0.00 0.00 34.02 3.18
4773 5695 3.503363 TGATGGACGACGTGTTAGTAGTT 59.497 43.478 4.58 0.00 30.30 2.24
4774 5696 3.988379 TGGACGACGTGTTAGTAGTTT 57.012 42.857 4.58 0.00 30.30 2.66
4775 5697 4.305989 TGGACGACGTGTTAGTAGTTTT 57.694 40.909 4.58 0.00 30.30 2.43
4776 5698 4.681744 TGGACGACGTGTTAGTAGTTTTT 58.318 39.130 4.58 0.00 30.30 1.94
4918 6837 6.292649 GGAAAAACCAAAAAGAATAGGCAACG 60.293 38.462 0.00 0.00 39.55 4.10
4922 6841 4.023193 ACCAAAAAGAATAGGCAACGTGAG 60.023 41.667 0.00 0.00 46.39 3.51
4930 6849 1.070786 GGCAACGTGAGGAGGAACA 59.929 57.895 0.00 0.00 0.00 3.18
4935 6854 3.500680 GCAACGTGAGGAGGAACATTTAA 59.499 43.478 0.00 0.00 0.00 1.52
5003 6922 7.077605 CGCTCATACAAGATTTTCAAAGTTCA 58.922 34.615 0.00 0.00 0.00 3.18
5155 10553 3.503748 CAGTGACCCTGAAAGAATTGGTC 59.496 47.826 0.00 0.00 44.49 4.02
5157 10555 4.387026 TGACCCTGAAAGAATTGGTCAT 57.613 40.909 5.61 0.00 43.56 3.06
5158 10556 5.512942 TGACCCTGAAAGAATTGGTCATA 57.487 39.130 5.61 0.00 43.56 2.15
5159 10557 5.500234 TGACCCTGAAAGAATTGGTCATAG 58.500 41.667 5.61 0.00 43.56 2.23
5160 10558 5.250543 TGACCCTGAAAGAATTGGTCATAGA 59.749 40.000 5.61 0.00 43.56 1.98
5161 10559 6.069440 TGACCCTGAAAGAATTGGTCATAGAT 60.069 38.462 5.61 0.00 43.56 1.98
5162 10560 6.360618 ACCCTGAAAGAATTGGTCATAGATC 58.639 40.000 0.00 0.00 34.07 2.75
5163 10561 6.159398 ACCCTGAAAGAATTGGTCATAGATCT 59.841 38.462 0.00 0.00 34.07 2.75
5165 10563 7.659390 CCCTGAAAGAATTGGTCATAGATCTAC 59.341 40.741 4.10 0.00 34.07 2.59
5166 10564 7.383572 CCTGAAAGAATTGGTCATAGATCTACG 59.616 40.741 4.10 0.00 34.07 3.51
5167 10565 8.007405 TGAAAGAATTGGTCATAGATCTACGA 57.993 34.615 4.10 0.00 0.00 3.43
5168 10566 7.921214 TGAAAGAATTGGTCATAGATCTACGAC 59.079 37.037 18.48 18.48 0.00 4.34
5169 10567 7.589958 AAGAATTGGTCATAGATCTACGACT 57.410 36.000 23.91 8.24 29.93 4.18
5170 10568 8.693120 AAGAATTGGTCATAGATCTACGACTA 57.307 34.615 23.91 17.75 29.93 2.59
5171 10569 8.871629 AGAATTGGTCATAGATCTACGACTAT 57.128 34.615 23.91 16.20 29.93 2.12
5172 10570 9.303116 AGAATTGGTCATAGATCTACGACTATT 57.697 33.333 23.91 21.59 29.93 1.73
5173 10571 9.915629 GAATTGGTCATAGATCTACGACTATTT 57.084 33.333 23.91 20.20 29.93 1.40
5174 10572 9.698309 AATTGGTCATAGATCTACGACTATTTG 57.302 33.333 23.91 8.72 29.93 2.32
5180 11010 9.726438 TCATAGATCTACGACTATTTGAGATCA 57.274 33.333 4.10 0.75 43.25 2.92
5184 11014 9.689976 AGATCTACGACTATTTGAGATCAATTG 57.310 33.333 11.58 0.00 43.25 2.32
5185 11015 8.824159 ATCTACGACTATTTGAGATCAATTGG 57.176 34.615 5.42 0.00 35.55 3.16
5186 11016 7.782049 TCTACGACTATTTGAGATCAATTGGT 58.218 34.615 5.42 0.00 34.93 3.67
5190 11020 7.390440 ACGACTATTTGAGATCAATTGGTCAAA 59.610 33.333 20.58 21.81 42.53 2.69
5195 11025 5.381174 TGAGATCAATTGGTCAAAAGCTG 57.619 39.130 20.58 0.00 0.00 4.24
5196 11026 4.828939 TGAGATCAATTGGTCAAAAGCTGT 59.171 37.500 20.58 0.00 0.00 4.40
5202 11032 1.285950 GGTCAAAAGCTGTTCGGGC 59.714 57.895 0.00 0.00 0.00 6.13
5209 11039 2.440539 AAGCTGTTCGGGCTATATCG 57.559 50.000 0.00 0.00 39.30 2.92
5210 11040 1.617322 AGCTGTTCGGGCTATATCGA 58.383 50.000 0.00 0.00 38.36 3.59
5211 11041 1.269998 AGCTGTTCGGGCTATATCGAC 59.730 52.381 0.00 0.00 38.36 4.20
5212 11042 1.669211 GCTGTTCGGGCTATATCGACC 60.669 57.143 0.00 0.00 34.99 4.79
5213 11043 1.611977 CTGTTCGGGCTATATCGACCA 59.388 52.381 0.00 0.00 34.99 4.02
5214 11044 2.231478 CTGTTCGGGCTATATCGACCAT 59.769 50.000 0.00 0.00 34.99 3.55
5215 11045 2.631062 TGTTCGGGCTATATCGACCATT 59.369 45.455 0.00 0.00 34.99 3.16
5216 11046 3.070446 TGTTCGGGCTATATCGACCATTT 59.930 43.478 0.00 0.00 34.99 2.32
5217 11047 4.062991 GTTCGGGCTATATCGACCATTTT 58.937 43.478 0.00 0.00 34.99 1.82
5218 11048 3.659786 TCGGGCTATATCGACCATTTTG 58.340 45.455 0.00 0.00 30.13 2.44
5219 11049 2.742053 CGGGCTATATCGACCATTTTGG 59.258 50.000 0.00 0.00 45.02 3.28
5231 11061 3.559238 CCATTTTGGTCAGAAAGGTCG 57.441 47.619 0.00 0.00 31.35 4.79
5232 11062 2.884639 CCATTTTGGTCAGAAAGGTCGT 59.115 45.455 0.00 0.00 31.35 4.34
5233 11063 4.069304 CCATTTTGGTCAGAAAGGTCGTA 58.931 43.478 0.00 0.00 31.35 3.43
5234 11064 4.517453 CCATTTTGGTCAGAAAGGTCGTAA 59.483 41.667 0.00 0.00 31.35 3.18
5235 11065 5.183140 CCATTTTGGTCAGAAAGGTCGTAAT 59.817 40.000 0.00 0.00 31.35 1.89
5236 11066 6.294508 CCATTTTGGTCAGAAAGGTCGTAATT 60.295 38.462 0.00 0.00 31.35 1.40
5239 11069 4.320870 TGGTCAGAAAGGTCGTAATTTCC 58.679 43.478 5.71 0.00 36.31 3.13
5240 11070 4.041198 TGGTCAGAAAGGTCGTAATTTCCT 59.959 41.667 5.71 0.00 36.31 3.36
5241 11071 5.001874 GGTCAGAAAGGTCGTAATTTCCTT 58.998 41.667 0.00 0.00 42.47 3.36
5242 11072 6.168389 GGTCAGAAAGGTCGTAATTTCCTTA 58.832 40.000 0.00 0.00 40.18 2.69
5243 11073 6.091849 GGTCAGAAAGGTCGTAATTTCCTTAC 59.908 42.308 0.00 0.00 40.18 2.34
5244 11074 6.647895 GTCAGAAAGGTCGTAATTTCCTTACA 59.352 38.462 0.00 0.00 40.18 2.41
5245 11075 6.647895 TCAGAAAGGTCGTAATTTCCTTACAC 59.352 38.462 0.00 0.00 40.18 2.90
5246 11076 5.636543 AGAAAGGTCGTAATTTCCTTACACG 59.363 40.000 0.00 0.00 40.18 4.49
5247 11077 4.789012 AGGTCGTAATTTCCTTACACGA 57.211 40.909 0.00 0.00 39.84 4.35
5249 11079 5.540911 AGGTCGTAATTTCCTTACACGAAA 58.459 37.500 0.00 0.00 42.57 3.46
5250 11080 6.168389 AGGTCGTAATTTCCTTACACGAAAT 58.832 36.000 0.00 0.00 42.57 2.17
5251 11081 6.091713 AGGTCGTAATTTCCTTACACGAAATG 59.908 38.462 0.00 0.00 42.57 2.32
5252 11082 6.245724 GTCGTAATTTCCTTACACGAAATGG 58.754 40.000 0.00 0.00 42.57 3.16
5253 11083 5.933463 TCGTAATTTCCTTACACGAAATGGT 59.067 36.000 0.00 0.00 39.34 3.55
5254 11084 6.091169 TCGTAATTTCCTTACACGAAATGGTC 59.909 38.462 0.00 0.00 39.34 4.02
5255 11085 6.128499 CGTAATTTCCTTACACGAAATGGTCA 60.128 38.462 0.00 0.00 39.34 4.02
5256 11086 6.834168 AATTTCCTTACACGAAATGGTCAT 57.166 33.333 0.00 0.00 39.34 3.06
5258 11088 7.931578 ATTTCCTTACACGAAATGGTCATAA 57.068 32.000 0.00 0.00 38.27 1.90
5259 11089 7.747155 TTTCCTTACACGAAATGGTCATAAA 57.253 32.000 0.00 0.00 0.00 1.40
5260 11090 6.978343 TCCTTACACGAAATGGTCATAAAG 57.022 37.500 0.00 0.00 0.00 1.85
5261 11091 5.353123 TCCTTACACGAAATGGTCATAAAGC 59.647 40.000 0.00 0.00 0.00 3.51
5262 11092 5.123186 CCTTACACGAAATGGTCATAAAGCA 59.877 40.000 0.00 0.00 40.26 3.91
5265 11095 4.154195 ACACGAAATGGTCATAAAGCAGAC 59.846 41.667 0.00 0.00 39.11 3.51
5266 11096 4.154015 CACGAAATGGTCATAAAGCAGACA 59.846 41.667 0.00 0.00 39.11 3.41
5267 11097 4.759693 ACGAAATGGTCATAAAGCAGACAA 59.240 37.500 0.00 0.00 39.11 3.18
5268 11098 5.088739 CGAAATGGTCATAAAGCAGACAAC 58.911 41.667 0.00 0.00 39.11 3.32
5269 11099 5.334802 CGAAATGGTCATAAAGCAGACAACA 60.335 40.000 0.00 0.00 39.11 3.33
5270 11100 5.376854 AATGGTCATAAAGCAGACAACAC 57.623 39.130 0.00 0.00 39.11 3.32
5278 11108 2.128771 AGCAGACAACACTGGTTTGT 57.871 45.000 0.00 0.00 44.52 2.83
5288 11118 5.351948 AACACTGGTTTGTTGCCTTATTT 57.648 34.783 0.00 0.00 38.31 1.40
5289 11119 4.944048 ACACTGGTTTGTTGCCTTATTTC 58.056 39.130 0.00 0.00 0.00 2.17
5290 11120 4.649218 ACACTGGTTTGTTGCCTTATTTCT 59.351 37.500 0.00 0.00 0.00 2.52
5291 11121 5.830991 ACACTGGTTTGTTGCCTTATTTCTA 59.169 36.000 0.00 0.00 0.00 2.10
5292 11122 6.016276 ACACTGGTTTGTTGCCTTATTTCTAG 60.016 38.462 0.00 0.00 0.00 2.43
5293 11123 5.048013 ACTGGTTTGTTGCCTTATTTCTAGC 60.048 40.000 0.00 0.00 0.00 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.731451 TCTGACGAATTCGAGCACAAAG 59.269 45.455 33.05 17.00 43.02 2.77
3 4 1.269723 ACTCTGACGAATTCGAGCACA 59.730 47.619 33.05 22.46 43.02 4.57
4 5 1.983972 ACTCTGACGAATTCGAGCAC 58.016 50.000 33.05 19.62 43.02 4.40
6 7 2.342948 GTCAACTCTGACGAATTCGAGC 59.657 50.000 33.05 22.93 42.54 5.03
17 18 6.150474 TCACATTATCACGTAGTCAACTCTGA 59.850 38.462 0.00 0.00 41.61 3.27
18 19 6.322491 TCACATTATCACGTAGTCAACTCTG 58.678 40.000 0.00 0.00 41.61 3.35
19 20 6.510879 TCACATTATCACGTAGTCAACTCT 57.489 37.500 0.00 0.00 41.61 3.24
20 21 7.757097 AATCACATTATCACGTAGTCAACTC 57.243 36.000 0.00 0.00 41.61 3.01
21 22 7.602644 ACAAATCACATTATCACGTAGTCAACT 59.397 33.333 0.00 0.00 41.61 3.16
22 23 7.688167 CACAAATCACATTATCACGTAGTCAAC 59.312 37.037 0.00 0.00 41.61 3.18
23 24 7.623297 GCACAAATCACATTATCACGTAGTCAA 60.623 37.037 0.00 0.00 41.61 3.18
24 25 6.183360 GCACAAATCACATTATCACGTAGTCA 60.183 38.462 0.00 0.00 41.61 3.41
25 26 6.036083 AGCACAAATCACATTATCACGTAGTC 59.964 38.462 0.00 0.00 41.61 2.59
27 28 6.349973 AGCACAAATCACATTATCACGTAG 57.650 37.500 0.00 0.00 0.00 3.51
28 29 6.370166 TCAAGCACAAATCACATTATCACGTA 59.630 34.615 0.00 0.00 0.00 3.57
29 30 5.181056 TCAAGCACAAATCACATTATCACGT 59.819 36.000 0.00 0.00 0.00 4.49
30 31 5.509272 GTCAAGCACAAATCACATTATCACG 59.491 40.000 0.00 0.00 0.00 4.35
31 32 5.801947 GGTCAAGCACAAATCACATTATCAC 59.198 40.000 0.00 0.00 0.00 3.06
32 33 5.711506 AGGTCAAGCACAAATCACATTATCA 59.288 36.000 0.00 0.00 0.00 2.15
33 34 6.032094 CAGGTCAAGCACAAATCACATTATC 58.968 40.000 0.00 0.00 0.00 1.75
34 35 5.622914 GCAGGTCAAGCACAAATCACATTAT 60.623 40.000 0.00 0.00 0.00 1.28
35 36 4.321156 GCAGGTCAAGCACAAATCACATTA 60.321 41.667 0.00 0.00 0.00 1.90
36 37 3.553508 GCAGGTCAAGCACAAATCACATT 60.554 43.478 0.00 0.00 0.00 2.71
37 38 2.029649 GCAGGTCAAGCACAAATCACAT 60.030 45.455 0.00 0.00 0.00 3.21
38 39 1.337703 GCAGGTCAAGCACAAATCACA 59.662 47.619 0.00 0.00 0.00 3.58
39 40 1.610522 AGCAGGTCAAGCACAAATCAC 59.389 47.619 0.00 0.00 0.00 3.06
40 41 1.985473 AGCAGGTCAAGCACAAATCA 58.015 45.000 0.00 0.00 0.00 2.57
41 42 3.077359 AGTAGCAGGTCAAGCACAAATC 58.923 45.455 0.00 0.00 0.00 2.17
42 43 2.816087 CAGTAGCAGGTCAAGCACAAAT 59.184 45.455 0.00 0.00 0.00 2.32
43 44 2.221169 CAGTAGCAGGTCAAGCACAAA 58.779 47.619 0.00 0.00 0.00 2.83
44 45 1.882912 CAGTAGCAGGTCAAGCACAA 58.117 50.000 0.00 0.00 0.00 3.33
45 46 0.603707 GCAGTAGCAGGTCAAGCACA 60.604 55.000 0.00 0.00 41.58 4.57
46 47 0.321122 AGCAGTAGCAGGTCAAGCAC 60.321 55.000 0.00 0.00 45.49 4.40
47 48 1.205655 CTAGCAGTAGCAGGTCAAGCA 59.794 52.381 0.00 0.00 45.49 3.91
48 49 1.472376 CCTAGCAGTAGCAGGTCAAGC 60.472 57.143 0.00 0.00 45.49 4.01
49 50 1.137872 CCCTAGCAGTAGCAGGTCAAG 59.862 57.143 0.00 0.00 45.49 3.02
50 51 1.195115 CCCTAGCAGTAGCAGGTCAA 58.805 55.000 0.00 0.00 45.49 3.18
51 52 1.330655 GCCCTAGCAGTAGCAGGTCA 61.331 60.000 0.00 0.00 45.49 4.02
52 53 1.443828 GCCCTAGCAGTAGCAGGTC 59.556 63.158 0.00 0.00 45.49 3.85
53 54 2.427245 CGCCCTAGCAGTAGCAGGT 61.427 63.158 0.00 0.00 45.49 4.00
54 55 2.419198 CGCCCTAGCAGTAGCAGG 59.581 66.667 0.00 0.00 45.49 4.85
55 56 1.227089 CACGCCCTAGCAGTAGCAG 60.227 63.158 0.00 0.00 45.49 4.24
56 57 1.680989 TCACGCCCTAGCAGTAGCA 60.681 57.895 0.00 0.00 45.49 3.49
57 58 1.227002 GTCACGCCCTAGCAGTAGC 60.227 63.158 0.00 0.00 39.83 3.58
58 59 0.101399 CAGTCACGCCCTAGCAGTAG 59.899 60.000 0.00 0.00 39.83 2.57
59 60 0.323087 TCAGTCACGCCCTAGCAGTA 60.323 55.000 0.00 0.00 39.83 2.74
60 61 1.185618 TTCAGTCACGCCCTAGCAGT 61.186 55.000 0.00 0.00 39.83 4.40
61 62 0.176680 ATTCAGTCACGCCCTAGCAG 59.823 55.000 0.00 0.00 39.83 4.24
62 63 0.613260 AATTCAGTCACGCCCTAGCA 59.387 50.000 0.00 0.00 39.83 3.49
63 64 1.666189 GAAATTCAGTCACGCCCTAGC 59.334 52.381 0.00 0.00 0.00 3.42
64 65 2.280628 GGAAATTCAGTCACGCCCTAG 58.719 52.381 0.00 0.00 0.00 3.02
65 66 1.065709 GGGAAATTCAGTCACGCCCTA 60.066 52.381 0.00 0.00 0.00 3.53
66 67 0.322546 GGGAAATTCAGTCACGCCCT 60.323 55.000 0.00 0.00 0.00 5.19
67 68 1.644786 CGGGAAATTCAGTCACGCCC 61.645 60.000 0.00 0.00 34.71 6.13
68 69 0.672401 TCGGGAAATTCAGTCACGCC 60.672 55.000 0.00 0.00 41.73 5.68
69 70 0.442699 GTCGGGAAATTCAGTCACGC 59.557 55.000 0.00 0.00 41.73 5.34
70 71 1.726791 CAGTCGGGAAATTCAGTCACG 59.273 52.381 0.00 0.00 43.36 4.35
71 72 3.040147 TCAGTCGGGAAATTCAGTCAC 57.960 47.619 0.00 0.00 0.00 3.67
72 73 3.762407 TTCAGTCGGGAAATTCAGTCA 57.238 42.857 0.00 0.00 0.00 3.41
73 74 5.432885 TTTTTCAGTCGGGAAATTCAGTC 57.567 39.130 0.00 0.00 36.71 3.51
74 75 6.405278 AATTTTTCAGTCGGGAAATTCAGT 57.595 33.333 0.00 0.00 36.71 3.41
75 76 5.569059 CGAATTTTTCAGTCGGGAAATTCAG 59.431 40.000 16.10 8.45 43.50 3.02
76 77 5.009210 ACGAATTTTTCAGTCGGGAAATTCA 59.991 36.000 16.10 1.24 43.50 2.57
77 78 5.458015 ACGAATTTTTCAGTCGGGAAATTC 58.542 37.500 9.27 9.27 41.56 2.17
78 79 5.447624 ACGAATTTTTCAGTCGGGAAATT 57.552 34.783 0.00 0.00 39.07 1.82
79 80 5.447624 AACGAATTTTTCAGTCGGGAAAT 57.552 34.783 0.00 0.00 39.07 2.17
80 81 4.904253 AACGAATTTTTCAGTCGGGAAA 57.096 36.364 0.00 0.00 39.07 3.13
81 82 6.374565 TTTAACGAATTTTTCAGTCGGGAA 57.625 33.333 0.00 0.00 39.07 3.97
82 83 5.049267 CCTTTAACGAATTTTTCAGTCGGGA 60.049 40.000 0.00 0.00 39.07 5.14
83 84 5.151389 CCTTTAACGAATTTTTCAGTCGGG 58.849 41.667 0.00 0.00 39.07 5.14
84 85 5.754778 ACCTTTAACGAATTTTTCAGTCGG 58.245 37.500 0.00 0.00 39.07 4.79
85 86 6.423862 TGACCTTTAACGAATTTTTCAGTCG 58.576 36.000 0.00 0.00 40.56 4.18
86 87 7.913821 ACTTGACCTTTAACGAATTTTTCAGTC 59.086 33.333 0.00 0.00 0.00 3.51
87 88 7.768240 ACTTGACCTTTAACGAATTTTTCAGT 58.232 30.769 0.00 0.00 0.00 3.41
88 89 8.628882 AACTTGACCTTTAACGAATTTTTCAG 57.371 30.769 0.00 0.00 0.00 3.02
89 90 7.429920 CGAACTTGACCTTTAACGAATTTTTCA 59.570 33.333 0.00 0.00 0.00 2.69
90 91 7.641020 TCGAACTTGACCTTTAACGAATTTTTC 59.359 33.333 0.00 0.00 0.00 2.29
91 92 7.474190 TCGAACTTGACCTTTAACGAATTTTT 58.526 30.769 0.00 0.00 0.00 1.94
92 93 7.011669 TCTCGAACTTGACCTTTAACGAATTTT 59.988 33.333 0.00 0.00 0.00 1.82
93 94 6.480981 TCTCGAACTTGACCTTTAACGAATTT 59.519 34.615 0.00 0.00 0.00 1.82
94 95 5.987347 TCTCGAACTTGACCTTTAACGAATT 59.013 36.000 0.00 0.00 0.00 2.17
95 96 5.535333 TCTCGAACTTGACCTTTAACGAAT 58.465 37.500 0.00 0.00 0.00 3.34
96 97 4.935702 TCTCGAACTTGACCTTTAACGAA 58.064 39.130 0.00 0.00 0.00 3.85
97 98 4.276678 TCTCTCGAACTTGACCTTTAACGA 59.723 41.667 0.00 0.00 0.00 3.85
98 99 4.543692 TCTCTCGAACTTGACCTTTAACG 58.456 43.478 0.00 0.00 0.00 3.18
99 100 4.924462 CCTCTCTCGAACTTGACCTTTAAC 59.076 45.833 0.00 0.00 0.00 2.01
100 101 4.560919 GCCTCTCTCGAACTTGACCTTTAA 60.561 45.833 0.00 0.00 0.00 1.52
101 102 3.056749 GCCTCTCTCGAACTTGACCTTTA 60.057 47.826 0.00 0.00 0.00 1.85
102 103 2.289133 GCCTCTCTCGAACTTGACCTTT 60.289 50.000 0.00 0.00 0.00 3.11
103 104 1.273886 GCCTCTCTCGAACTTGACCTT 59.726 52.381 0.00 0.00 0.00 3.50
104 105 0.892063 GCCTCTCTCGAACTTGACCT 59.108 55.000 0.00 0.00 0.00 3.85
105 106 0.603569 TGCCTCTCTCGAACTTGACC 59.396 55.000 0.00 0.00 0.00 4.02
106 107 1.989430 CTGCCTCTCTCGAACTTGAC 58.011 55.000 0.00 0.00 0.00 3.18
107 108 0.244994 GCTGCCTCTCTCGAACTTGA 59.755 55.000 0.00 0.00 0.00 3.02
108 109 0.739112 GGCTGCCTCTCTCGAACTTG 60.739 60.000 12.43 0.00 0.00 3.16
109 110 1.594310 GGCTGCCTCTCTCGAACTT 59.406 57.895 12.43 0.00 0.00 2.66
110 111 2.705821 CGGCTGCCTCTCTCGAACT 61.706 63.158 17.92 0.00 0.00 3.01
111 112 2.202676 CGGCTGCCTCTCTCGAAC 60.203 66.667 17.92 0.00 0.00 3.95
112 113 4.135153 GCGGCTGCCTCTCTCGAA 62.135 66.667 17.92 0.00 33.98 3.71
129 130 3.136123 CTGCCATGGAAGCCACCG 61.136 66.667 18.40 0.00 35.80 4.94
130 131 2.757099 CCTGCCATGGAAGCCACC 60.757 66.667 18.40 0.00 35.80 4.61
137 138 0.547471 TCTCCTTCACCTGCCATGGA 60.547 55.000 18.40 0.00 0.00 3.41
145 146 2.418669 TCCACCTTTTCTCCTTCACCT 58.581 47.619 0.00 0.00 0.00 4.00
158 159 6.546484 TCTTCTTCATCTCAAAATCCACCTT 58.454 36.000 0.00 0.00 0.00 3.50
169 170 3.521126 CCCCCTTCTTCTTCTTCATCTCA 59.479 47.826 0.00 0.00 0.00 3.27
170 171 3.777522 TCCCCCTTCTTCTTCTTCATCTC 59.222 47.826 0.00 0.00 0.00 2.75
171 172 3.779738 CTCCCCCTTCTTCTTCTTCATCT 59.220 47.826 0.00 0.00 0.00 2.90
172 173 3.777522 TCTCCCCCTTCTTCTTCTTCATC 59.222 47.826 0.00 0.00 0.00 2.92
173 174 3.779738 CTCTCCCCCTTCTTCTTCTTCAT 59.220 47.826 0.00 0.00 0.00 2.57
174 175 3.177228 CTCTCCCCCTTCTTCTTCTTCA 58.823 50.000 0.00 0.00 0.00 3.02
175 176 2.503765 CCTCTCCCCCTTCTTCTTCTTC 59.496 54.545 0.00 0.00 0.00 2.87
180 185 0.793617 TCACCTCTCCCCCTTCTTCT 59.206 55.000 0.00 0.00 0.00 2.85
227 243 3.531934 ATTGTAGGCGTTAGGTACACC 57.468 47.619 0.00 0.00 0.00 4.16
255 274 4.878439 TCGCCACATGATAATACAGTACC 58.122 43.478 0.00 0.00 0.00 3.34
256 275 4.923871 CCTCGCCACATGATAATACAGTAC 59.076 45.833 0.00 0.00 0.00 2.73
258 277 3.641436 TCCTCGCCACATGATAATACAGT 59.359 43.478 0.00 0.00 0.00 3.55
259 278 4.257267 TCCTCGCCACATGATAATACAG 57.743 45.455 0.00 0.00 0.00 2.74
260 279 4.681074 TTCCTCGCCACATGATAATACA 57.319 40.909 0.00 0.00 0.00 2.29
275 294 0.036010 ACTGTTCCCAGCATTCCTCG 60.036 55.000 0.00 0.00 42.81 4.63
293 314 1.620323 AGATGGCTGCCAAAAAGGAAC 59.380 47.619 27.24 9.43 41.22 3.62
297 318 3.006110 TGAAAGAGATGGCTGCCAAAAAG 59.994 43.478 27.24 0.00 36.95 2.27
344 382 3.055530 GCTATCCCCATCATCGAACATCT 60.056 47.826 0.00 0.00 0.00 2.90
347 385 2.037641 CAGCTATCCCCATCATCGAACA 59.962 50.000 0.00 0.00 0.00 3.18
387 425 7.201767 GCAGGAAGCTTAATTCTTGATACACAT 60.202 37.037 0.00 0.00 38.24 3.21
405 443 1.448985 TTGTCGTAATGGCAGGAAGC 58.551 50.000 0.00 0.00 44.65 3.86
406 444 3.334691 TCTTTGTCGTAATGGCAGGAAG 58.665 45.455 0.00 0.00 0.00 3.46
415 453 1.014352 GCGCCCATCTTTGTCGTAAT 58.986 50.000 0.00 0.00 0.00 1.89
417 455 0.739462 CTGCGCCCATCTTTGTCGTA 60.739 55.000 4.18 0.00 0.00 3.43
431 471 1.343506 CAAGCCAAAGATTTCTGCGC 58.656 50.000 0.00 0.00 0.00 6.09
434 474 1.897802 AGGGCAAGCCAAAGATTTCTG 59.102 47.619 13.87 0.00 37.98 3.02
439 479 0.543646 AAGCAGGGCAAGCCAAAGAT 60.544 50.000 13.87 0.00 37.98 2.40
476 516 0.813821 GATCCTCCAAAGTGCCAAGC 59.186 55.000 0.00 0.00 0.00 4.01
568 618 9.925268 AATAAATATTTGTCGACGGTGTATTTC 57.075 29.630 21.00 0.00 0.00 2.17
627 695 2.808543 GGACAAGTTGGCTACTCACTTG 59.191 50.000 9.01 10.55 42.26 3.16
643 716 5.783875 AGCTAAGTAGTAGAAAAGGGGACAA 59.216 40.000 0.00 0.00 30.50 3.18
684 757 1.655372 ACCCCAAAATCCACCCAATG 58.345 50.000 0.00 0.00 0.00 2.82
705 778 6.765403 TGTGTTATACAACCTACAGCTTCTT 58.235 36.000 0.00 0.00 36.06 2.52
725 798 4.990426 GCAAATACAATTCCTTGCTTGTGT 59.010 37.500 0.00 0.00 40.76 3.72
726 799 4.989797 TGCAAATACAATTCCTTGCTTGTG 59.010 37.500 7.12 0.00 43.59 3.33
772 853 5.214417 GTTTATGCGGGTAAAGAAAACGTT 58.786 37.500 0.00 0.00 0.00 3.99
904 1316 1.286248 GGAAGTAAGGAAGGGGAGCA 58.714 55.000 0.00 0.00 0.00 4.26
929 1345 9.908152 GTGTGTGTGTGTGCTTAGATATATATA 57.092 33.333 0.00 0.00 0.00 0.86
930 1346 7.595130 CGTGTGTGTGTGTGCTTAGATATATAT 59.405 37.037 0.00 0.00 0.00 0.86
931 1347 6.915843 CGTGTGTGTGTGTGCTTAGATATATA 59.084 38.462 0.00 0.00 0.00 0.86
976 1403 5.780282 TGTCTCTCTTCTTGTCCTAATGGAA 59.220 40.000 0.00 0.00 45.18 3.53
1040 1473 0.036732 GAAGAGTGCATGGTGGGACA 59.963 55.000 0.00 0.00 0.00 4.02
1085 1518 7.348815 TGAGAATATGATTGTGTTGGAGGATT 58.651 34.615 0.00 0.00 0.00 3.01
1158 1591 2.756760 GGAGATGCCAGATTTGAAGCAA 59.243 45.455 0.00 0.00 38.99 3.91
1214 1647 0.947244 CCAGCCACAGAAGTTGTCAC 59.053 55.000 0.00 0.00 38.16 3.67
1271 1710 1.293498 CTGAGTTGGAGGGACACGG 59.707 63.158 0.00 0.00 0.00 4.94
1360 1799 5.007724 CGCTTCCAGATAACTTATTGTTCCC 59.992 44.000 0.00 0.00 39.89 3.97
1454 1893 3.967326 TGTACCTAATGACAGAGGGATGG 59.033 47.826 10.23 0.00 37.14 3.51
1535 1974 7.882791 TGAGTGATGAACTATTTGCTAAGGAAA 59.117 33.333 0.00 0.00 40.07 3.13
1929 2368 7.277098 TGTCCGATAAAATAGTTGCTGTCTAAC 59.723 37.037 0.00 0.00 0.00 2.34
1934 2373 5.730550 TCTGTCCGATAAAATAGTTGCTGT 58.269 37.500 0.00 0.00 0.00 4.40
1950 2389 5.927115 GCCTATTTTAGAAGGTATCTGTCCG 59.073 44.000 0.00 0.00 39.30 4.79
1971 2410 1.707427 AGATTTGGAAGTGAGTGGCCT 59.293 47.619 3.32 0.00 0.00 5.19
2173 2612 2.239907 GAGAGGTAAGGAATGCCCAGTT 59.760 50.000 0.00 0.00 37.41 3.16
2491 2930 1.757118 CTGGCCGAGTTGAGGAAGATA 59.243 52.381 0.00 0.00 0.00 1.98
2574 3013 6.818644 GGTTGTTGAAGTTCAGCATATCTAGA 59.181 38.462 21.16 3.88 37.44 2.43
2579 3018 5.769662 TCAAGGTTGTTGAAGTTCAGCATAT 59.230 36.000 21.16 9.06 37.44 1.78
2677 3122 2.192175 CCTTGGTACCGGCCCATC 59.808 66.667 13.80 0.00 0.00 3.51
2751 3196 1.909986 AGTTCAGAAGGAAGGCTACCC 59.090 52.381 0.00 0.00 35.82 3.69
2791 3236 4.038271 TGCTTTCAATCTGAAGGGATGT 57.962 40.909 1.37 0.00 37.70 3.06
2792 3237 4.219070 TGTTGCTTTCAATCTGAAGGGATG 59.781 41.667 1.37 0.00 37.70 3.51
2865 3310 7.621428 ATTGTTGTCAGACAGATCTATTTGG 57.379 36.000 2.82 0.00 32.25 3.28
3083 3528 0.618680 TGATGAGGTGGTGGGAGAGG 60.619 60.000 0.00 0.00 0.00 3.69
3084 3529 1.065854 GTTGATGAGGTGGTGGGAGAG 60.066 57.143 0.00 0.00 0.00 3.20
3085 3530 0.984230 GTTGATGAGGTGGTGGGAGA 59.016 55.000 0.00 0.00 0.00 3.71
3086 3531 0.692476 TGTTGATGAGGTGGTGGGAG 59.308 55.000 0.00 0.00 0.00 4.30
3087 3532 1.144691 TTGTTGATGAGGTGGTGGGA 58.855 50.000 0.00 0.00 0.00 4.37
3088 3533 1.993956 TTTGTTGATGAGGTGGTGGG 58.006 50.000 0.00 0.00 0.00 4.61
3089 3534 3.243839 CCTTTTTGTTGATGAGGTGGTGG 60.244 47.826 0.00 0.00 0.00 4.61
3090 3535 3.636300 TCCTTTTTGTTGATGAGGTGGTG 59.364 43.478 0.00 0.00 0.00 4.17
3091 3536 3.909732 TCCTTTTTGTTGATGAGGTGGT 58.090 40.909 0.00 0.00 0.00 4.16
3092 3537 4.584325 TCTTCCTTTTTGTTGATGAGGTGG 59.416 41.667 0.00 0.00 0.00 4.61
3093 3538 5.772825 TCTTCCTTTTTGTTGATGAGGTG 57.227 39.130 0.00 0.00 0.00 4.00
3094 3539 6.070656 TGATCTTCCTTTTTGTTGATGAGGT 58.929 36.000 0.00 0.00 0.00 3.85
3100 3545 6.329496 GTGTGTTGATCTTCCTTTTTGTTGA 58.671 36.000 0.00 0.00 0.00 3.18
3354 3811 1.496060 TGATGGCCACTAGATCCGTT 58.504 50.000 8.16 0.00 0.00 4.44
3357 3814 1.771255 ACCTTGATGGCCACTAGATCC 59.229 52.381 8.16 0.00 40.22 3.36
3378 3835 2.208431 CCTTGCTCGCTAAGATGGAAG 58.792 52.381 0.00 0.00 0.00 3.46
3489 3946 2.787473 ACTCATCGCCCTCAAAATCA 57.213 45.000 0.00 0.00 0.00 2.57
3655 4118 2.158813 TCAAAGGAGGTGTCAGTTGGTC 60.159 50.000 0.00 0.00 0.00 4.02
3660 4123 3.392616 AGTGAATCAAAGGAGGTGTCAGT 59.607 43.478 0.00 0.00 0.00 3.41
3846 4311 4.119862 TCAACAGTCGTCTCAAAGAAAGG 58.880 43.478 0.00 0.00 0.00 3.11
3874 4343 8.573035 ACTAACAAAACAAAGACAGTTCAGAAA 58.427 29.630 0.00 0.00 0.00 2.52
4068 4537 2.026301 GGGAAGGCTCGATCGACG 59.974 66.667 15.15 11.63 44.09 5.12
4113 4582 1.203174 TCCTCCTCGGATGGCATATGA 60.203 52.381 6.97 0.00 36.69 2.15
4480 5394 8.707839 TGAAACAAAGTTTTAACAAAGCTTCAG 58.292 29.630 0.00 0.00 40.40 3.02
4508 5422 6.540914 TCAGAAAATCACACCTTCGTAGTTTT 59.459 34.615 0.00 0.00 0.00 2.43
4513 5428 6.567701 GCATTTCAGAAAATCACACCTTCGTA 60.568 38.462 0.00 0.00 32.69 3.43
4549 5470 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
4550 5471 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
4551 5472 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
4552 5473 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
4553 5474 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
4554 5475 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
4565 5486 9.117183 TGAAGTAGTGATCTAAACGCTCTTATA 57.883 33.333 0.00 0.00 0.00 0.98
4566 5487 7.997482 TGAAGTAGTGATCTAAACGCTCTTAT 58.003 34.615 0.00 0.00 0.00 1.73
4567 5488 7.120873 ACTGAAGTAGTGATCTAAACGCTCTTA 59.879 37.037 0.00 0.00 38.49 2.10
4568 5489 6.071840 ACTGAAGTAGTGATCTAAACGCTCTT 60.072 38.462 0.00 0.00 38.49 2.85
4569 5490 5.416326 ACTGAAGTAGTGATCTAAACGCTCT 59.584 40.000 0.00 0.00 38.49 4.09
4570 5491 5.642686 ACTGAAGTAGTGATCTAAACGCTC 58.357 41.667 0.00 0.00 38.49 5.03
4571 5492 5.646577 ACTGAAGTAGTGATCTAAACGCT 57.353 39.130 0.00 0.00 38.49 5.07
4583 5504 5.416326 AGAGCGTTTAGATCACTGAAGTAGT 59.584 40.000 0.00 0.00 41.36 2.73
4584 5505 5.885881 AGAGCGTTTAGATCACTGAAGTAG 58.114 41.667 0.00 0.00 37.82 2.57
4585 5506 5.899120 AGAGCGTTTAGATCACTGAAGTA 57.101 39.130 0.00 0.00 37.82 2.24
4586 5507 4.792521 AGAGCGTTTAGATCACTGAAGT 57.207 40.909 0.00 0.00 37.82 3.01
4587 5508 9.469807 AATATAAGAGCGTTTAGATCACTGAAG 57.530 33.333 0.00 0.00 37.82 3.02
4590 5511 9.900710 ACTAATATAAGAGCGTTTAGATCACTG 57.099 33.333 0.00 0.00 37.82 3.66
4599 5520 9.490379 CCTCCATAAACTAATATAAGAGCGTTT 57.510 33.333 0.00 0.00 0.00 3.60
4600 5521 8.095169 CCCTCCATAAACTAATATAAGAGCGTT 58.905 37.037 0.00 0.00 0.00 4.84
4601 5522 7.453752 TCCCTCCATAAACTAATATAAGAGCGT 59.546 37.037 0.00 0.00 0.00 5.07
4602 5523 7.837863 TCCCTCCATAAACTAATATAAGAGCG 58.162 38.462 0.00 0.00 0.00 5.03
4603 5524 8.817876 ACTCCCTCCATAAACTAATATAAGAGC 58.182 37.037 0.00 0.00 0.00 4.09
4619 5540 9.762381 TTGTTTAAAAATATGTACTCCCTCCAT 57.238 29.630 0.00 0.00 0.00 3.41
4620 5541 9.238368 CTTGTTTAAAAATATGTACTCCCTCCA 57.762 33.333 0.00 0.00 0.00 3.86
4621 5542 9.239551 ACTTGTTTAAAAATATGTACTCCCTCC 57.760 33.333 0.00 0.00 0.00 4.30
4623 5544 9.582648 ACACTTGTTTAAAAATATGTACTCCCT 57.417 29.630 0.00 0.00 0.00 4.20
4651 5572 7.927629 TGGTTCCAAAAGAAGAATCAAATCAAG 59.072 33.333 0.00 0.00 34.29 3.02
4653 5574 7.358770 TGGTTCCAAAAGAAGAATCAAATCA 57.641 32.000 0.00 0.00 34.29 2.57
4674 5595 6.375455 GTCCTTCAGTATTTGACATTCATGGT 59.625 38.462 0.00 0.00 34.94 3.55
4707 5628 5.124936 AGTGGCTAAATTATCCGGTTTGAAC 59.875 40.000 0.00 0.00 0.00 3.18
4738 5660 3.320826 TCGTCCATCAGAACACTTTGAGA 59.679 43.478 0.00 0.00 0.00 3.27
4746 5668 0.671796 ACACGTCGTCCATCAGAACA 59.328 50.000 0.00 0.00 0.00 3.18
4748 5670 2.555325 ACTAACACGTCGTCCATCAGAA 59.445 45.455 0.00 0.00 0.00 3.02
4750 5672 2.631418 ACTAACACGTCGTCCATCAG 57.369 50.000 0.00 0.00 0.00 2.90
4978 6897 7.077605 TGAACTTTGAAAATCTTGTATGAGCG 58.922 34.615 0.00 0.00 0.00 5.03
5003 6922 5.319043 TGGGAACTTTAGAAACATGTCCT 57.681 39.130 0.00 2.14 0.00 3.85
5032 6951 3.343617 TCTGTGTTTATTGCCTACAGCC 58.656 45.455 0.00 0.00 42.71 4.85
5098 7019 9.639601 TCACTAGTTGACATATTTCTTGTAGTG 57.360 33.333 13.42 13.42 33.23 2.74
5138 10536 5.779241 TCTATGACCAATTCTTTCAGGGT 57.221 39.130 0.00 0.00 33.78 4.34
5139 10537 6.599445 AGATCTATGACCAATTCTTTCAGGG 58.401 40.000 0.00 0.00 0.00 4.45
5158 10556 9.689976 CAATTGATCTCAAATAGTCGTAGATCT 57.310 33.333 0.00 0.00 41.93 2.75
5159 10557 8.920665 CCAATTGATCTCAAATAGTCGTAGATC 58.079 37.037 7.12 0.00 41.82 2.75
5160 10558 8.424918 ACCAATTGATCTCAAATAGTCGTAGAT 58.575 33.333 7.12 0.00 38.06 1.98
5161 10559 7.782049 ACCAATTGATCTCAAATAGTCGTAGA 58.218 34.615 7.12 0.00 39.55 2.59
5162 10560 7.706607 TGACCAATTGATCTCAAATAGTCGTAG 59.293 37.037 7.12 0.00 39.55 3.51
5163 10561 7.552459 TGACCAATTGATCTCAAATAGTCGTA 58.448 34.615 7.12 0.00 39.55 3.43
5165 10563 6.908870 TGACCAATTGATCTCAAATAGTCG 57.091 37.500 7.12 0.00 39.55 4.18
5166 10564 9.565213 CTTTTGACCAATTGATCTCAAATAGTC 57.435 33.333 18.62 10.23 39.55 2.59
5167 10565 8.031277 GCTTTTGACCAATTGATCTCAAATAGT 58.969 33.333 18.62 2.73 39.55 2.12
5168 10566 8.248945 AGCTTTTGACCAATTGATCTCAAATAG 58.751 33.333 18.62 17.86 39.55 1.73
5169 10567 8.030692 CAGCTTTTGACCAATTGATCTCAAATA 58.969 33.333 18.62 12.39 39.55 1.40
5170 10568 6.872020 CAGCTTTTGACCAATTGATCTCAAAT 59.128 34.615 18.62 8.29 39.55 2.32
5171 10569 6.183360 ACAGCTTTTGACCAATTGATCTCAAA 60.183 34.615 7.12 13.06 39.55 2.69
5172 10570 5.302568 ACAGCTTTTGACCAATTGATCTCAA 59.697 36.000 7.12 7.90 40.51 3.02
5173 10571 4.828939 ACAGCTTTTGACCAATTGATCTCA 59.171 37.500 7.12 1.75 0.00 3.27
5174 10572 5.382618 ACAGCTTTTGACCAATTGATCTC 57.617 39.130 7.12 0.00 0.00 2.75
5180 11010 2.035832 CCCGAACAGCTTTTGACCAATT 59.964 45.455 0.00 0.00 0.00 2.32
5182 11012 1.028905 CCCGAACAGCTTTTGACCAA 58.971 50.000 0.00 0.00 0.00 3.67
5183 11013 1.452145 GCCCGAACAGCTTTTGACCA 61.452 55.000 0.00 0.00 0.00 4.02
5184 11014 1.172812 AGCCCGAACAGCTTTTGACC 61.173 55.000 0.00 0.00 37.24 4.02
5185 11015 1.519408 TAGCCCGAACAGCTTTTGAC 58.481 50.000 0.00 0.00 41.83 3.18
5186 11016 2.489938 ATAGCCCGAACAGCTTTTGA 57.510 45.000 0.00 0.00 41.83 2.69
5190 11020 1.961394 TCGATATAGCCCGAACAGCTT 59.039 47.619 0.00 0.00 41.83 3.74
5195 11025 3.314541 AATGGTCGATATAGCCCGAAC 57.685 47.619 0.00 0.00 42.32 3.95
5196 11026 4.062293 CAAAATGGTCGATATAGCCCGAA 58.938 43.478 0.00 0.00 36.50 4.30
5211 11041 2.884639 ACGACCTTTCTGACCAAAATGG 59.115 45.455 0.00 0.00 45.02 3.16
5212 11042 5.682943 TTACGACCTTTCTGACCAAAATG 57.317 39.130 0.00 0.00 0.00 2.32
5213 11043 6.894339 AATTACGACCTTTCTGACCAAAAT 57.106 33.333 0.00 0.00 0.00 1.82
5214 11044 6.238814 GGAAATTACGACCTTTCTGACCAAAA 60.239 38.462 0.00 0.00 33.02 2.44
5215 11045 5.239963 GGAAATTACGACCTTTCTGACCAAA 59.760 40.000 0.00 0.00 33.02 3.28
5216 11046 4.758165 GGAAATTACGACCTTTCTGACCAA 59.242 41.667 0.00 0.00 33.02 3.67
5217 11047 4.041198 AGGAAATTACGACCTTTCTGACCA 59.959 41.667 0.00 0.00 33.02 4.02
5218 11048 4.576879 AGGAAATTACGACCTTTCTGACC 58.423 43.478 0.00 0.00 33.02 4.02
5219 11049 6.647895 TGTAAGGAAATTACGACCTTTCTGAC 59.352 38.462 0.00 0.00 45.78 3.51
5220 11050 6.647895 GTGTAAGGAAATTACGACCTTTCTGA 59.352 38.462 0.00 0.00 45.78 3.27
5221 11051 6.400727 CGTGTAAGGAAATTACGACCTTTCTG 60.401 42.308 0.00 0.00 45.78 3.02
5223 11053 5.634859 TCGTGTAAGGAAATTACGACCTTTC 59.365 40.000 0.00 0.00 45.78 2.62
5226 11056 4.789012 TCGTGTAAGGAAATTACGACCT 57.211 40.909 0.00 0.00 45.78 3.85
5236 11066 6.128117 GCTTTATGACCATTTCGTGTAAGGAA 60.128 38.462 0.00 0.00 39.21 3.36
5239 11069 6.092122 TCTGCTTTATGACCATTTCGTGTAAG 59.908 38.462 0.00 0.00 0.00 2.34
5240 11070 5.935206 TCTGCTTTATGACCATTTCGTGTAA 59.065 36.000 0.00 0.00 0.00 2.41
5241 11071 5.350365 GTCTGCTTTATGACCATTTCGTGTA 59.650 40.000 0.00 0.00 0.00 2.90
5242 11072 4.154195 GTCTGCTTTATGACCATTTCGTGT 59.846 41.667 0.00 0.00 0.00 4.49
5243 11073 4.154015 TGTCTGCTTTATGACCATTTCGTG 59.846 41.667 0.00 0.00 32.67 4.35
5244 11074 4.323417 TGTCTGCTTTATGACCATTTCGT 58.677 39.130 0.00 0.00 32.67 3.85
5245 11075 4.944962 TGTCTGCTTTATGACCATTTCG 57.055 40.909 0.00 0.00 32.67 3.46
5246 11076 5.858581 GTGTTGTCTGCTTTATGACCATTTC 59.141 40.000 0.00 0.00 32.67 2.17
5247 11077 5.536161 AGTGTTGTCTGCTTTATGACCATTT 59.464 36.000 0.00 0.00 32.67 2.32
5249 11079 4.456911 CAGTGTTGTCTGCTTTATGACCAT 59.543 41.667 0.00 0.00 32.67 3.55
5250 11080 3.814842 CAGTGTTGTCTGCTTTATGACCA 59.185 43.478 0.00 0.00 32.67 4.02
5251 11081 3.189287 CCAGTGTTGTCTGCTTTATGACC 59.811 47.826 0.00 0.00 34.47 4.02
5252 11082 3.815401 ACCAGTGTTGTCTGCTTTATGAC 59.185 43.478 0.00 0.00 34.47 3.06
5253 11083 4.085357 ACCAGTGTTGTCTGCTTTATGA 57.915 40.909 0.00 0.00 34.47 2.15
5254 11084 4.836125 AACCAGTGTTGTCTGCTTTATG 57.164 40.909 0.00 0.00 34.47 1.90
5255 11085 4.644685 ACAAACCAGTGTTGTCTGCTTTAT 59.355 37.500 0.00 0.00 34.13 1.40
5256 11086 4.013728 ACAAACCAGTGTTGTCTGCTTTA 58.986 39.130 0.00 0.00 34.13 1.85
5258 11088 2.446435 ACAAACCAGTGTTGTCTGCTT 58.554 42.857 0.00 0.00 34.13 3.91
5259 11089 2.128771 ACAAACCAGTGTTGTCTGCT 57.871 45.000 0.00 0.00 34.13 4.24
5260 11090 2.939460 AACAAACCAGTGTTGTCTGC 57.061 45.000 0.06 0.00 40.22 4.26
5266 11096 5.128663 AGAAATAAGGCAACAAACCAGTGTT 59.871 36.000 0.00 0.00 42.48 3.32
5267 11097 4.649218 AGAAATAAGGCAACAAACCAGTGT 59.351 37.500 0.00 0.00 41.41 3.55
5268 11098 5.200368 AGAAATAAGGCAACAAACCAGTG 57.800 39.130 0.00 0.00 41.41 3.66
5269 11099 5.048013 GCTAGAAATAAGGCAACAAACCAGT 60.048 40.000 0.00 0.00 41.41 4.00
5270 11100 5.402398 GCTAGAAATAAGGCAACAAACCAG 58.598 41.667 0.00 0.00 41.41 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.