Multiple sequence alignment - TraesCS2D01G065600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G065600 chr2D 100.000 3548 0 0 1 3548 27903599 27900052 0.000000e+00 6553.0
1 TraesCS2D01G065600 chr2D 90.052 2302 162 32 1268 3548 27888691 27886436 0.000000e+00 2920.0
2 TraesCS2D01G065600 chr2D 89.841 1575 115 26 1268 2828 27891930 27890387 0.000000e+00 1980.0
3 TraesCS2D01G065600 chr2D 83.849 582 76 12 2973 3548 27889994 27889425 4.030000e-149 538.0
4 TraesCS2D01G065600 chr2D 92.084 379 15 6 842 1207 27892492 27892116 1.460000e-143 520.0
5 TraesCS2D01G065600 chr2D 87.081 418 52 2 1657 2073 27849564 27849148 4.150000e-129 472.0
6 TraesCS2D01G065600 chr2D 89.665 358 21 7 862 1205 27889234 27888879 3.250000e-120 442.0
7 TraesCS2D01G065600 chr2D 93.865 163 10 0 276 438 23303502 23303664 2.740000e-61 246.0
8 TraesCS2D01G065600 chr2D 89.610 154 13 1 1043 1196 27884170 27884020 3.610000e-45 193.0
9 TraesCS2D01G065600 chr2D 86.905 84 9 2 17 99 21639583 21639665 3.770000e-15 93.5
10 TraesCS2D01G065600 chr2A 93.345 2284 105 21 694 2961 30127618 30125366 0.000000e+00 3332.0
11 TraesCS2D01G065600 chr2A 89.852 1685 126 21 1291 2960 30086432 30084778 0.000000e+00 2122.0
12 TraesCS2D01G065600 chr2A 89.515 1650 126 26 1328 2960 30091293 30089674 0.000000e+00 2045.0
13 TraesCS2D01G065600 chr2A 89.932 1470 121 17 2097 3548 30076494 30075034 0.000000e+00 1869.0
14 TraesCS2D01G065600 chr2A 88.768 828 54 16 1268 2083 30080283 30079483 0.000000e+00 977.0
15 TraesCS2D01G065600 chr2A 89.867 375 15 6 842 1207 30091876 30091516 8.970000e-126 460.0
16 TraesCS2D01G065600 chr2A 89.722 360 22 6 861 1207 30087003 30086646 2.510000e-121 446.0
17 TraesCS2D01G065600 chr2A 84.199 443 63 4 1658 2094 30016827 30016386 1.180000e-114 424.0
18 TraesCS2D01G065600 chr2A 88.301 359 25 8 861 1205 30080826 30080471 7.090000e-112 414.0
19 TraesCS2D01G065600 chr2A 90.260 154 15 0 1043 1196 30049088 30048935 6.010000e-48 202.0
20 TraesCS2D01G065600 chr2A 88.961 154 14 3 1043 1196 30021457 30021307 1.680000e-43 187.0
21 TraesCS2D01G065600 chr2A 89.130 92 10 0 167 258 175550461 175550552 8.050000e-22 115.0
22 TraesCS2D01G065600 chr2A 95.652 69 3 0 165 233 495245787 495245719 1.040000e-20 111.0
23 TraesCS2D01G065600 chr2A 92.000 50 4 0 42 91 722245012 722245061 1.770000e-08 71.3
24 TraesCS2D01G065600 chr2A 100.000 29 0 0 1224 1252 715965633 715965605 2.000000e-03 54.7
25 TraesCS2D01G065600 chr2A 94.118 34 2 0 1216 1249 150913990 150914023 6.000000e-03 52.8
26 TraesCS2D01G065600 chr2A 100.000 28 0 0 1222 1249 733413988 733413961 6.000000e-03 52.8
27 TraesCS2D01G065600 chr2B 92.427 2258 101 33 758 2961 44362121 44359880 0.000000e+00 3158.0
28 TraesCS2D01G065600 chr2B 89.102 1670 136 26 1287 2938 44352494 44350853 0.000000e+00 2034.0
29 TraesCS2D01G065600 chr2B 90.666 1457 101 22 1521 2960 44347062 44345624 0.000000e+00 1905.0
30 TraesCS2D01G065600 chr2B 83.362 583 70 16 2973 3548 44344927 44344365 6.790000e-142 514.0
31 TraesCS2D01G065600 chr2B 86.765 476 42 9 744 1205 44353168 44352700 8.790000e-141 510.0
32 TraesCS2D01G065600 chr2B 90.000 360 21 6 861 1207 44347951 44347594 5.400000e-123 451.0
33 TraesCS2D01G065600 chr2B 88.327 257 29 1 440 695 573022005 573022261 1.240000e-79 307.0
34 TraesCS2D01G065600 chr2B 87.342 237 21 3 1286 1522 44347393 44347166 2.720000e-66 263.0
35 TraesCS2D01G065600 chr2B 89.881 168 12 2 1 168 44353365 44353203 9.980000e-51 211.0
36 TraesCS2D01G065600 chr2B 88.298 94 11 0 165 258 790891564 790891471 2.890000e-21 113.0
37 TraesCS2D01G065600 chr2B 95.588 68 3 0 166 233 182260001 182260068 3.740000e-20 110.0
38 TraesCS2D01G065600 chr2B 82.927 82 11 3 17 97 31059622 31059701 1.770000e-08 71.3
39 TraesCS2D01G065600 chr5D 91.051 257 22 1 440 695 491336152 491335896 2.620000e-91 346.0
40 TraesCS2D01G065600 chr5D 86.957 92 12 0 167 258 454109286 454109377 1.740000e-18 104.0
41 TraesCS2D01G065600 chr1A 91.016 256 20 2 440 695 339793596 339793848 3.390000e-90 342.0
42 TraesCS2D01G065600 chr1A 94.366 71 4 0 163 233 248219391 248219461 3.740000e-20 110.0
43 TraesCS2D01G065600 chr7B 89.313 262 24 4 440 698 78649634 78649894 3.420000e-85 326.0
44 TraesCS2D01G065600 chr7B 89.105 257 25 2 440 695 261204978 261204724 2.060000e-82 316.0
45 TraesCS2D01G065600 chr7B 91.071 168 15 0 271 438 640720524 640720357 9.910000e-56 228.0
46 TraesCS2D01G065600 chr7B 91.549 71 6 0 27 97 702457719 702457649 8.110000e-17 99.0
47 TraesCS2D01G065600 chr5B 88.672 256 28 1 440 695 71993750 71993496 9.560000e-81 311.0
48 TraesCS2D01G065600 chr5B 90.476 168 15 1 271 438 356369352 356369186 1.660000e-53 220.0
49 TraesCS2D01G065600 chr3A 88.327 257 26 2 440 695 177108702 177108955 4.450000e-79 305.0
50 TraesCS2D01G065600 chr3A 87.234 94 10 2 167 258 526039213 526039120 4.840000e-19 106.0
51 TraesCS2D01G065600 chr3A 96.970 33 1 0 1222 1254 95018389 95018357 4.950000e-04 56.5
52 TraesCS2D01G065600 chr3A 96.774 31 1 0 1222 1252 427779551 427779521 6.000000e-03 52.8
53 TraesCS2D01G065600 chr7D 87.739 261 31 1 442 701 630765791 630765531 1.600000e-78 303.0
54 TraesCS2D01G065600 chrUn 87.938 257 30 1 440 695 451740566 451740822 5.760000e-78 302.0
55 TraesCS2D01G065600 chrUn 90.058 171 17 0 268 438 358260625 358260795 4.610000e-54 222.0
56 TraesCS2D01G065600 chrUn 92.105 76 6 0 158 233 49639863 49639938 1.350000e-19 108.0
57 TraesCS2D01G065600 chrUn 100.000 28 0 0 1222 1249 478962447 478962474 6.000000e-03 52.8
58 TraesCS2D01G065600 chr5A 92.899 169 11 1 271 438 17727888 17727720 9.840000e-61 244.0
59 TraesCS2D01G065600 chr3D 91.228 171 13 2 268 438 414778188 414778356 7.660000e-57 231.0
60 TraesCS2D01G065600 chr3D 91.018 167 15 0 271 437 380180063 380179897 3.560000e-55 226.0
61 TraesCS2D01G065600 chr3D 94.872 39 2 0 1216 1254 608238758 608238796 1.060000e-05 62.1
62 TraesCS2D01G065600 chr4B 90.643 171 16 0 268 438 504044710 504044880 9.910000e-56 228.0
63 TraesCS2D01G065600 chr4B 78.539 219 34 8 2973 3178 580854811 580855029 7.990000e-27 132.0
64 TraesCS2D01G065600 chr1D 91.071 168 15 0 271 438 461344754 461344587 9.910000e-56 228.0
65 TraesCS2D01G065600 chr1B 88.636 176 18 2 271 444 8705414 8705239 2.770000e-51 213.0
66 TraesCS2D01G065600 chr1B 85.075 134 19 1 312 445 169117453 169117321 6.180000e-28 135.0
67 TraesCS2D01G065600 chr3B 87.234 94 10 2 167 258 303791177 303791270 4.840000e-19 106.0
68 TraesCS2D01G065600 chr3B 81.250 128 23 1 312 438 806262602 806262729 6.270000e-18 102.0
69 TraesCS2D01G065600 chr3B 97.143 35 1 0 1222 1256 152833031 152832997 3.830000e-05 60.2
70 TraesCS2D01G065600 chr4D 80.315 127 24 1 310 436 359735396 359735521 1.050000e-15 95.3
71 TraesCS2D01G065600 chr6B 79.630 108 21 1 3 110 129874856 129874750 3.800000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G065600 chr2D 27900052 27903599 3547 True 6553.000000 6553 100.000000 1 3548 1 chr2D.!!$R2 3547
1 TraesCS2D01G065600 chr2D 27884020 27892492 8472 True 1098.833333 2920 89.183500 842 3548 6 chr2D.!!$R3 2706
2 TraesCS2D01G065600 chr2A 30125366 30127618 2252 True 3332.000000 3332 93.345000 694 2961 1 chr2A.!!$R4 2267
3 TraesCS2D01G065600 chr2A 30075034 30091876 16842 True 1190.428571 2122 89.422429 842 3548 7 chr2A.!!$R8 2706
4 TraesCS2D01G065600 chr2B 44359880 44362121 2241 True 3158.000000 3158 92.427000 758 2961 1 chr2B.!!$R1 2203
5 TraesCS2D01G065600 chr2B 44344365 44353365 9000 True 841.142857 2034 88.159714 1 3548 7 chr2B.!!$R3 3547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
324 325 0.175760 TAGTGAAGAGGGACATGCGC 59.824 55.000 0.00 0.0 0.00 6.09 F
332 333 0.827507 AGGGACATGCGCTGGTTTTT 60.828 50.000 9.73 0.0 38.52 1.94 F
2217 24878 1.399791 CTACCAACGTAGGTCGAGGAC 59.600 57.143 8.18 0.0 42.06 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1574 6941 3.023119 TCCACAAGCAAGAAAGCTCAAA 58.977 40.909 0.00 0.00 45.89 2.69 R
2326 24987 1.810151 GCAAGACATAGGCGTTTCCAA 59.190 47.619 0.00 0.00 37.29 3.53 R
3324 26721 2.811101 CCAAACTTTGGCGTGCCA 59.189 55.556 10.06 10.06 45.17 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.483808 TGAACAAGAGTGCCATGTACA 57.516 42.857 0.00 0.00 0.00 2.90
38 39 6.423182 AGTGCCATGTACATATAACCAGTTT 58.577 36.000 8.32 0.00 0.00 2.66
39 40 7.570132 AGTGCCATGTACATATAACCAGTTTA 58.430 34.615 8.32 0.00 0.00 2.01
57 58 7.641020 ACCAGTTTAACGTATTTTTCAAGTTCG 59.359 33.333 0.00 0.00 0.00 3.95
59 60 7.112426 CAGTTTAACGTATTTTTCAAGTTCGGG 59.888 37.037 0.00 0.00 0.00 5.14
61 62 2.879646 ACGTATTTTTCAAGTTCGGGCA 59.120 40.909 0.00 0.00 0.00 5.36
97 98 2.427410 GCAAGTTCAAGCGCCACG 60.427 61.111 2.29 0.00 0.00 4.94
101 102 2.357760 GTTCAAGCGCCACGGGTA 60.358 61.111 2.29 0.00 0.00 3.69
109 110 1.708193 GCGCCACGGGTACAATTACC 61.708 60.000 0.00 0.00 46.63 2.85
166 167 5.068591 AGCAGTAACTTTCCGGAAACAAAAT 59.931 36.000 25.67 9.81 0.00 1.82
167 168 6.263617 AGCAGTAACTTTCCGGAAACAAAATA 59.736 34.615 25.67 11.03 0.00 1.40
168 169 6.361481 GCAGTAACTTTCCGGAAACAAAATAC 59.639 38.462 25.67 20.15 0.00 1.89
169 170 7.645402 CAGTAACTTTCCGGAAACAAAATACT 58.355 34.615 25.67 21.68 0.00 2.12
170 171 8.132995 CAGTAACTTTCCGGAAACAAAATACTT 58.867 33.333 25.67 8.92 0.00 2.24
171 172 8.347771 AGTAACTTTCCGGAAACAAAATACTTC 58.652 33.333 25.67 7.91 0.00 3.01
172 173 6.080648 ACTTTCCGGAAACAAAATACTTCC 57.919 37.500 25.67 0.00 36.12 3.46
173 174 5.831525 ACTTTCCGGAAACAAAATACTTCCT 59.168 36.000 25.67 0.00 37.13 3.36
174 175 5.952526 TTCCGGAAACAAAATACTTCCTC 57.047 39.130 16.28 0.00 37.13 3.71
175 176 5.237236 TCCGGAAACAAAATACTTCCTCT 57.763 39.130 0.00 0.00 37.13 3.69
176 177 6.363167 TCCGGAAACAAAATACTTCCTCTA 57.637 37.500 0.00 0.00 37.13 2.43
177 178 6.954232 TCCGGAAACAAAATACTTCCTCTAT 58.046 36.000 0.00 0.00 37.13 1.98
178 179 7.399634 TCCGGAAACAAAATACTTCCTCTATT 58.600 34.615 0.00 0.00 37.13 1.73
179 180 7.551617 TCCGGAAACAAAATACTTCCTCTATTC 59.448 37.037 0.00 0.00 37.13 1.75
180 181 7.201705 CCGGAAACAAAATACTTCCTCTATTCC 60.202 40.741 0.00 0.00 37.13 3.01
181 182 7.201705 CGGAAACAAAATACTTCCTCTATTCCC 60.202 40.741 0.00 0.00 37.13 3.97
182 183 7.834681 GGAAACAAAATACTTCCTCTATTCCCT 59.165 37.037 0.00 0.00 36.48 4.20
183 184 9.244292 GAAACAAAATACTTCCTCTATTCCCTT 57.756 33.333 0.00 0.00 0.00 3.95
213 214 8.776376 AAGGCCACTATGAAAATTACATTTTG 57.224 30.769 5.01 2.88 42.15 2.44
214 215 6.818142 AGGCCACTATGAAAATTACATTTTGC 59.182 34.615 5.01 0.00 42.15 3.68
215 216 6.593382 GGCCACTATGAAAATTACATTTTGCA 59.407 34.615 0.00 0.00 42.15 4.08
216 217 7.280652 GGCCACTATGAAAATTACATTTTGCAT 59.719 33.333 0.00 5.92 42.15 3.96
217 218 8.330302 GCCACTATGAAAATTACATTTTGCATC 58.670 33.333 0.00 0.00 42.15 3.91
218 219 9.590451 CCACTATGAAAATTACATTTTGCATCT 57.410 29.630 0.00 0.00 42.15 2.90
227 228 9.533253 AAATTACATTTTGCATCTATACAAGGC 57.467 29.630 0.00 0.00 0.00 4.35
228 229 5.520376 ACATTTTGCATCTATACAAGGCC 57.480 39.130 0.00 0.00 0.00 5.19
229 230 4.955450 ACATTTTGCATCTATACAAGGCCA 59.045 37.500 5.01 0.00 0.00 5.36
230 231 4.981806 TTTTGCATCTATACAAGGCCAC 57.018 40.909 5.01 0.00 0.00 5.01
231 232 3.931907 TTGCATCTATACAAGGCCACT 57.068 42.857 5.01 0.00 0.00 4.00
232 233 5.366482 TTTGCATCTATACAAGGCCACTA 57.634 39.130 5.01 0.00 0.00 2.74
233 234 5.567037 TTGCATCTATACAAGGCCACTAT 57.433 39.130 5.01 0.00 0.00 2.12
234 235 4.898320 TGCATCTATACAAGGCCACTATG 58.102 43.478 5.01 0.21 0.00 2.23
235 236 4.592778 TGCATCTATACAAGGCCACTATGA 59.407 41.667 5.01 0.00 0.00 2.15
236 237 5.071653 TGCATCTATACAAGGCCACTATGAA 59.928 40.000 5.01 0.00 0.00 2.57
237 238 5.997746 GCATCTATACAAGGCCACTATGAAA 59.002 40.000 5.01 0.00 0.00 2.69
238 239 6.486657 GCATCTATACAAGGCCACTATGAAAA 59.513 38.462 5.01 0.00 0.00 2.29
239 240 7.175641 GCATCTATACAAGGCCACTATGAAAAT 59.824 37.037 5.01 0.00 0.00 1.82
240 241 9.071276 CATCTATACAAGGCCACTATGAAAATT 57.929 33.333 5.01 0.00 0.00 1.82
242 243 9.555727 TCTATACAAGGCCACTATGAAAATTAC 57.444 33.333 5.01 0.00 0.00 1.89
243 244 5.914898 ACAAGGCCACTATGAAAATTACC 57.085 39.130 5.01 0.00 0.00 2.85
244 245 5.580022 ACAAGGCCACTATGAAAATTACCT 58.420 37.500 5.01 0.00 0.00 3.08
245 246 6.016555 ACAAGGCCACTATGAAAATTACCTT 58.983 36.000 5.01 0.00 35.42 3.50
246 247 6.496911 ACAAGGCCACTATGAAAATTACCTTT 59.503 34.615 5.01 0.00 32.82 3.11
247 248 7.016170 ACAAGGCCACTATGAAAATTACCTTTT 59.984 33.333 5.01 0.00 39.78 2.27
248 249 6.935167 AGGCCACTATGAAAATTACCTTTTG 58.065 36.000 5.01 0.00 37.18 2.44
249 250 5.580691 GGCCACTATGAAAATTACCTTTTGC 59.419 40.000 0.00 0.00 37.18 3.68
250 251 6.162777 GCCACTATGAAAATTACCTTTTGCA 58.837 36.000 0.00 0.00 37.18 4.08
251 252 6.818142 GCCACTATGAAAATTACCTTTTGCAT 59.182 34.615 0.00 0.00 37.18 3.96
252 253 7.010460 GCCACTATGAAAATTACCTTTTGCATC 59.990 37.037 0.00 0.00 37.18 3.91
253 254 8.253113 CCACTATGAAAATTACCTTTTGCATCT 58.747 33.333 0.00 0.00 37.18 2.90
262 263 9.700831 AAATTACCTTTTGCATCTATACTTCCT 57.299 29.630 0.00 0.00 0.00 3.36
263 264 8.910351 ATTACCTTTTGCATCTATACTTCCTC 57.090 34.615 0.00 0.00 0.00 3.71
264 265 6.567602 ACCTTTTGCATCTATACTTCCTCT 57.432 37.500 0.00 0.00 0.00 3.69
265 266 7.676683 ACCTTTTGCATCTATACTTCCTCTA 57.323 36.000 0.00 0.00 0.00 2.43
266 267 8.268878 ACCTTTTGCATCTATACTTCCTCTAT 57.731 34.615 0.00 0.00 0.00 1.98
267 268 8.718656 ACCTTTTGCATCTATACTTCCTCTATT 58.281 33.333 0.00 0.00 0.00 1.73
268 269 9.213799 CCTTTTGCATCTATACTTCCTCTATTC 57.786 37.037 0.00 0.00 0.00 1.75
269 270 9.770097 CTTTTGCATCTATACTTCCTCTATTCA 57.230 33.333 0.00 0.00 0.00 2.57
271 272 9.770097 TTTGCATCTATACTTCCTCTATTCAAG 57.230 33.333 0.00 0.00 0.00 3.02
272 273 7.382110 TGCATCTATACTTCCTCTATTCAAGC 58.618 38.462 0.00 0.00 0.00 4.01
273 274 7.234371 TGCATCTATACTTCCTCTATTCAAGCT 59.766 37.037 0.00 0.00 0.00 3.74
274 275 7.759433 GCATCTATACTTCCTCTATTCAAGCTC 59.241 40.741 0.00 0.00 0.00 4.09
275 276 7.441890 TCTATACTTCCTCTATTCAAGCTCG 57.558 40.000 0.00 0.00 0.00 5.03
276 277 3.810310 ACTTCCTCTATTCAAGCTCGG 57.190 47.619 0.00 0.00 0.00 4.63
277 278 2.432510 ACTTCCTCTATTCAAGCTCGGG 59.567 50.000 0.00 0.00 0.00 5.14
278 279 2.160721 TCCTCTATTCAAGCTCGGGT 57.839 50.000 0.00 0.00 0.00 5.28
279 280 1.757118 TCCTCTATTCAAGCTCGGGTG 59.243 52.381 0.00 0.00 0.00 4.61
280 281 1.757118 CCTCTATTCAAGCTCGGGTGA 59.243 52.381 0.00 0.00 0.00 4.02
281 282 2.168521 CCTCTATTCAAGCTCGGGTGAA 59.831 50.000 1.21 1.21 38.09 3.18
282 283 3.452474 CTCTATTCAAGCTCGGGTGAAG 58.548 50.000 4.95 0.00 37.19 3.02
283 284 3.096852 TCTATTCAAGCTCGGGTGAAGA 58.903 45.455 4.95 0.00 37.19 2.87
284 285 2.859165 ATTCAAGCTCGGGTGAAGAA 57.141 45.000 4.95 0.00 37.19 2.52
285 286 2.169832 TTCAAGCTCGGGTGAAGAAG 57.830 50.000 0.00 0.00 30.41 2.85
286 287 1.048601 TCAAGCTCGGGTGAAGAAGT 58.951 50.000 0.00 0.00 0.00 3.01
287 288 1.151668 CAAGCTCGGGTGAAGAAGTG 58.848 55.000 0.00 0.00 0.00 3.16
288 289 1.048601 AAGCTCGGGTGAAGAAGTGA 58.951 50.000 0.00 0.00 0.00 3.41
289 290 1.270907 AGCTCGGGTGAAGAAGTGAT 58.729 50.000 0.00 0.00 0.00 3.06
290 291 2.457598 AGCTCGGGTGAAGAAGTGATA 58.542 47.619 0.00 0.00 0.00 2.15
291 292 3.034635 AGCTCGGGTGAAGAAGTGATAT 58.965 45.455 0.00 0.00 0.00 1.63
292 293 3.126831 GCTCGGGTGAAGAAGTGATATG 58.873 50.000 0.00 0.00 0.00 1.78
293 294 3.430929 GCTCGGGTGAAGAAGTGATATGT 60.431 47.826 0.00 0.00 0.00 2.29
294 295 4.363999 CTCGGGTGAAGAAGTGATATGTC 58.636 47.826 0.00 0.00 0.00 3.06
295 296 3.132289 TCGGGTGAAGAAGTGATATGTCC 59.868 47.826 0.00 0.00 0.00 4.02
296 297 3.741388 CGGGTGAAGAAGTGATATGTCCC 60.741 52.174 0.00 0.00 0.00 4.46
297 298 3.433740 GGGTGAAGAAGTGATATGTCCCC 60.434 52.174 0.00 0.00 0.00 4.81
298 299 3.456277 GGTGAAGAAGTGATATGTCCCCT 59.544 47.826 0.00 0.00 0.00 4.79
299 300 4.080299 GGTGAAGAAGTGATATGTCCCCTT 60.080 45.833 0.00 0.00 0.00 3.95
300 301 5.501156 GTGAAGAAGTGATATGTCCCCTTT 58.499 41.667 0.00 0.00 0.00 3.11
301 302 5.946377 GTGAAGAAGTGATATGTCCCCTTTT 59.054 40.000 0.00 0.00 0.00 2.27
302 303 6.094186 GTGAAGAAGTGATATGTCCCCTTTTC 59.906 42.308 0.00 0.00 0.00 2.29
303 304 5.117406 AGAAGTGATATGTCCCCTTTTCC 57.883 43.478 0.00 0.00 0.00 3.13
304 305 4.790790 AGAAGTGATATGTCCCCTTTTCCT 59.209 41.667 0.00 0.00 0.00 3.36
305 306 5.254032 AGAAGTGATATGTCCCCTTTTCCTT 59.746 40.000 0.00 0.00 0.00 3.36
306 307 6.447084 AGAAGTGATATGTCCCCTTTTCCTTA 59.553 38.462 0.00 0.00 0.00 2.69
307 308 6.253946 AGTGATATGTCCCCTTTTCCTTAG 57.746 41.667 0.00 0.00 0.00 2.18
308 309 5.731678 AGTGATATGTCCCCTTTTCCTTAGT 59.268 40.000 0.00 0.00 0.00 2.24
309 310 5.823045 GTGATATGTCCCCTTTTCCTTAGTG 59.177 44.000 0.00 0.00 0.00 2.74
310 311 5.729229 TGATATGTCCCCTTTTCCTTAGTGA 59.271 40.000 0.00 0.00 0.00 3.41
311 312 6.216662 TGATATGTCCCCTTTTCCTTAGTGAA 59.783 38.462 0.00 0.00 0.00 3.18
312 313 4.367039 TGTCCCCTTTTCCTTAGTGAAG 57.633 45.455 0.00 0.00 0.00 3.02
313 314 3.977999 TGTCCCCTTTTCCTTAGTGAAGA 59.022 43.478 0.00 0.00 34.25 2.87
314 315 4.041691 TGTCCCCTTTTCCTTAGTGAAGAG 59.958 45.833 0.00 0.00 34.25 2.85
315 316 3.587506 TCCCCTTTTCCTTAGTGAAGAGG 59.412 47.826 10.75 10.75 43.09 3.69
317 318 4.910458 CCTTTTCCTTAGTGAAGAGGGA 57.090 45.455 10.19 0.00 40.95 4.20
318 319 4.580868 CCTTTTCCTTAGTGAAGAGGGAC 58.419 47.826 10.19 0.00 40.95 4.46
319 320 4.041691 CCTTTTCCTTAGTGAAGAGGGACA 59.958 45.833 10.19 0.00 40.95 4.02
320 321 5.280727 CCTTTTCCTTAGTGAAGAGGGACAT 60.281 44.000 10.19 0.00 40.95 3.06
321 322 4.826274 TTCCTTAGTGAAGAGGGACATG 57.174 45.455 0.00 0.00 34.25 3.21
322 323 2.501723 TCCTTAGTGAAGAGGGACATGC 59.498 50.000 0.00 0.00 34.25 4.06
323 324 2.544685 CTTAGTGAAGAGGGACATGCG 58.455 52.381 0.00 0.00 34.25 4.73
324 325 0.175760 TAGTGAAGAGGGACATGCGC 59.824 55.000 0.00 0.00 0.00 6.09
325 326 1.078848 GTGAAGAGGGACATGCGCT 60.079 57.895 9.73 6.45 43.30 5.92
326 327 1.078918 TGAAGAGGGACATGCGCTG 60.079 57.895 9.73 7.16 40.28 5.18
327 328 1.817099 GAAGAGGGACATGCGCTGG 60.817 63.158 9.73 2.61 40.28 4.85
328 329 2.527951 GAAGAGGGACATGCGCTGGT 62.528 60.000 9.73 6.59 40.28 4.00
329 330 2.045926 GAGGGACATGCGCTGGTT 60.046 61.111 9.73 0.00 40.28 3.67
330 331 1.675641 GAGGGACATGCGCTGGTTT 60.676 57.895 9.73 0.00 40.28 3.27
331 332 1.228552 AGGGACATGCGCTGGTTTT 60.229 52.632 9.73 0.00 38.52 2.43
332 333 0.827507 AGGGACATGCGCTGGTTTTT 60.828 50.000 9.73 0.00 38.52 1.94
364 365 7.740805 GGATTATCCTATCTTTTCAGTCCTGT 58.259 38.462 3.59 0.00 32.53 4.00
365 366 8.871125 GGATTATCCTATCTTTTCAGTCCTGTA 58.129 37.037 3.59 0.00 32.53 2.74
369 370 7.496346 TCCTATCTTTTCAGTCCTGTAATGT 57.504 36.000 0.00 0.00 0.00 2.71
370 371 7.556844 TCCTATCTTTTCAGTCCTGTAATGTC 58.443 38.462 0.00 0.00 0.00 3.06
371 372 7.180229 TCCTATCTTTTCAGTCCTGTAATGTCA 59.820 37.037 0.00 0.00 0.00 3.58
372 373 7.824289 CCTATCTTTTCAGTCCTGTAATGTCAA 59.176 37.037 0.00 0.00 0.00 3.18
373 374 9.388506 CTATCTTTTCAGTCCTGTAATGTCAAT 57.611 33.333 0.00 0.00 0.00 2.57
375 376 9.911788 ATCTTTTCAGTCCTGTAATGTCAATAT 57.088 29.630 0.00 0.00 0.00 1.28
376 377 9.739276 TCTTTTCAGTCCTGTAATGTCAATATT 57.261 29.630 0.00 0.00 0.00 1.28
379 380 7.320443 TCAGTCCTGTAATGTCAATATTTGC 57.680 36.000 0.00 0.00 0.00 3.68
380 381 6.037062 TCAGTCCTGTAATGTCAATATTTGCG 59.963 38.462 0.00 0.00 0.00 4.85
381 382 5.880332 AGTCCTGTAATGTCAATATTTGCGT 59.120 36.000 0.00 0.00 0.00 5.24
382 383 5.965334 GTCCTGTAATGTCAATATTTGCGTG 59.035 40.000 0.00 0.00 0.00 5.34
383 384 5.065859 TCCTGTAATGTCAATATTTGCGTGG 59.934 40.000 0.00 0.00 0.00 4.94
384 385 4.667262 TGTAATGTCAATATTTGCGTGGC 58.333 39.130 0.00 0.00 0.00 5.01
385 386 4.397730 TGTAATGTCAATATTTGCGTGGCT 59.602 37.500 0.00 0.00 0.00 4.75
386 387 4.454728 AATGTCAATATTTGCGTGGCTT 57.545 36.364 0.00 0.00 0.00 4.35
387 388 3.214697 TGTCAATATTTGCGTGGCTTG 57.785 42.857 0.00 0.00 0.00 4.01
388 389 2.556189 TGTCAATATTTGCGTGGCTTGT 59.444 40.909 0.00 0.00 0.00 3.16
389 390 3.753797 TGTCAATATTTGCGTGGCTTGTA 59.246 39.130 0.00 0.00 0.00 2.41
390 391 4.216472 TGTCAATATTTGCGTGGCTTGTAA 59.784 37.500 0.00 0.00 0.00 2.41
391 392 4.793216 GTCAATATTTGCGTGGCTTGTAAG 59.207 41.667 0.00 0.00 0.00 2.34
392 393 4.457603 TCAATATTTGCGTGGCTTGTAAGT 59.542 37.500 0.00 0.00 0.00 2.24
393 394 2.704725 ATTTGCGTGGCTTGTAAGTG 57.295 45.000 0.00 0.00 0.00 3.16
394 395 1.669604 TTTGCGTGGCTTGTAAGTGA 58.330 45.000 0.00 0.00 0.00 3.41
395 396 1.669604 TTGCGTGGCTTGTAAGTGAA 58.330 45.000 0.00 0.00 0.00 3.18
396 397 1.890876 TGCGTGGCTTGTAAGTGAAT 58.109 45.000 0.00 0.00 0.00 2.57
397 398 2.226330 TGCGTGGCTTGTAAGTGAATT 58.774 42.857 0.00 0.00 0.00 2.17
398 399 2.621055 TGCGTGGCTTGTAAGTGAATTT 59.379 40.909 0.00 0.00 0.00 1.82
399 400 3.067461 TGCGTGGCTTGTAAGTGAATTTT 59.933 39.130 0.00 0.00 0.00 1.82
400 401 4.048504 GCGTGGCTTGTAAGTGAATTTTT 58.951 39.130 0.00 0.00 0.00 1.94
401 402 5.216648 GCGTGGCTTGTAAGTGAATTTTTA 58.783 37.500 0.00 0.00 0.00 1.52
402 403 5.861787 GCGTGGCTTGTAAGTGAATTTTTAT 59.138 36.000 0.00 0.00 0.00 1.40
403 404 6.364976 GCGTGGCTTGTAAGTGAATTTTTATT 59.635 34.615 0.00 0.00 0.00 1.40
404 405 7.095816 GCGTGGCTTGTAAGTGAATTTTTATTT 60.096 33.333 0.00 0.00 0.00 1.40
405 406 8.760569 CGTGGCTTGTAAGTGAATTTTTATTTT 58.239 29.630 0.00 0.00 0.00 1.82
458 459 8.644374 AAAAATTCTATACAAGGGCACTAACA 57.356 30.769 0.00 0.00 0.00 2.41
459 460 8.644374 AAAATTCTATACAAGGGCACTAACAA 57.356 30.769 0.00 0.00 0.00 2.83
460 461 8.823220 AAATTCTATACAAGGGCACTAACAAT 57.177 30.769 0.00 0.00 0.00 2.71
461 462 9.914834 AAATTCTATACAAGGGCACTAACAATA 57.085 29.630 0.00 0.00 0.00 1.90
462 463 9.914834 AATTCTATACAAGGGCACTAACAATAA 57.085 29.630 0.00 0.00 0.00 1.40
464 465 9.555727 TTCTATACAAGGGCACTAACAATAATC 57.444 33.333 0.00 0.00 0.00 1.75
465 466 6.861065 ATACAAGGGCACTAACAATAATCG 57.139 37.500 0.00 0.00 0.00 3.34
466 467 4.839121 ACAAGGGCACTAACAATAATCGA 58.161 39.130 0.00 0.00 0.00 3.59
467 468 4.876107 ACAAGGGCACTAACAATAATCGAG 59.124 41.667 0.00 0.00 0.00 4.04
468 469 5.116180 CAAGGGCACTAACAATAATCGAGA 58.884 41.667 0.00 0.00 0.00 4.04
469 470 4.694339 AGGGCACTAACAATAATCGAGAC 58.306 43.478 0.00 0.00 0.00 3.36
470 471 4.161565 AGGGCACTAACAATAATCGAGACA 59.838 41.667 0.00 0.00 0.00 3.41
471 472 4.873827 GGGCACTAACAATAATCGAGACAA 59.126 41.667 0.00 0.00 0.00 3.18
472 473 5.353123 GGGCACTAACAATAATCGAGACAAA 59.647 40.000 0.00 0.00 0.00 2.83
473 474 6.128117 GGGCACTAACAATAATCGAGACAAAA 60.128 38.462 0.00 0.00 0.00 2.44
474 475 7.302524 GGCACTAACAATAATCGAGACAAAAA 58.697 34.615 0.00 0.00 0.00 1.94
475 476 7.968405 GGCACTAACAATAATCGAGACAAAAAT 59.032 33.333 0.00 0.00 0.00 1.82
476 477 9.341899 GCACTAACAATAATCGAGACAAAAATT 57.658 29.630 0.00 0.00 0.00 1.82
487 488 9.480053 AATCGAGACAAAAATTGATGATGTTTT 57.520 25.926 0.00 0.00 0.00 2.43
488 489 8.506140 TCGAGACAAAAATTGATGATGTTTTC 57.494 30.769 0.00 0.00 0.00 2.29
489 490 8.352201 TCGAGACAAAAATTGATGATGTTTTCT 58.648 29.630 0.00 0.00 0.00 2.52
490 491 8.633408 CGAGACAAAAATTGATGATGTTTTCTC 58.367 33.333 0.00 0.00 32.65 2.87
491 492 9.467258 GAGACAAAAATTGATGATGTTTTCTCA 57.533 29.630 0.00 0.00 34.08 3.27
492 493 9.991906 AGACAAAAATTGATGATGTTTTCTCAT 57.008 25.926 0.00 0.00 36.07 2.90
499 500 8.969260 ATTGATGATGTTTTCTCATACTAGCA 57.031 30.769 0.00 0.00 33.56 3.49
500 501 8.791327 TTGATGATGTTTTCTCATACTAGCAA 57.209 30.769 0.00 0.00 33.56 3.91
501 502 8.201554 TGATGATGTTTTCTCATACTAGCAAC 57.798 34.615 0.00 0.00 33.56 4.17
502 503 8.043113 TGATGATGTTTTCTCATACTAGCAACT 58.957 33.333 0.00 0.00 33.56 3.16
503 504 8.798859 ATGATGTTTTCTCATACTAGCAACTT 57.201 30.769 0.00 0.00 31.65 2.66
504 505 8.032952 TGATGTTTTCTCATACTAGCAACTTG 57.967 34.615 0.00 0.00 0.00 3.16
505 506 7.661437 TGATGTTTTCTCATACTAGCAACTTGT 59.339 33.333 0.00 0.00 0.00 3.16
506 507 7.801716 TGTTTTCTCATACTAGCAACTTGTT 57.198 32.000 0.00 0.00 0.00 2.83
507 508 8.220755 TGTTTTCTCATACTAGCAACTTGTTT 57.779 30.769 0.00 0.00 0.00 2.83
508 509 9.332502 TGTTTTCTCATACTAGCAACTTGTTTA 57.667 29.630 0.00 0.00 0.00 2.01
516 517 9.490663 CATACTAGCAACTTGTTTAATACTTGC 57.509 33.333 0.00 0.00 35.33 4.01
517 518 7.504924 ACTAGCAACTTGTTTAATACTTGCA 57.495 32.000 0.00 0.00 37.14 4.08
518 519 8.110860 ACTAGCAACTTGTTTAATACTTGCAT 57.889 30.769 0.00 0.00 37.14 3.96
519 520 8.023128 ACTAGCAACTTGTTTAATACTTGCATG 58.977 33.333 0.00 0.00 37.14 4.06
520 521 5.634859 AGCAACTTGTTTAATACTTGCATGC 59.365 36.000 11.82 11.82 37.14 4.06
521 522 5.404968 GCAACTTGTTTAATACTTGCATGCA 59.595 36.000 18.46 18.46 35.23 3.96
522 523 6.091169 GCAACTTGTTTAATACTTGCATGCAT 59.909 34.615 23.37 10.46 35.23 3.96
523 524 7.449827 CAACTTGTTTAATACTTGCATGCATG 58.550 34.615 26.93 26.93 0.00 4.06
524 525 6.690530 ACTTGTTTAATACTTGCATGCATGT 58.309 32.000 33.40 33.40 37.87 3.21
525 526 7.825681 ACTTGTTTAATACTTGCATGCATGTA 58.174 30.769 34.92 34.92 39.65 2.29
526 527 7.970061 ACTTGTTTAATACTTGCATGCATGTAG 59.030 33.333 35.26 27.26 39.04 2.74
527 528 7.389803 TGTTTAATACTTGCATGCATGTAGT 57.610 32.000 35.26 34.72 39.04 2.73
528 529 7.471721 TGTTTAATACTTGCATGCATGTAGTC 58.528 34.615 35.19 25.74 39.04 2.59
529 530 7.120432 TGTTTAATACTTGCATGCATGTAGTCA 59.880 33.333 35.19 27.32 39.04 3.41
530 531 7.806409 TTAATACTTGCATGCATGTAGTCAT 57.194 32.000 35.19 26.22 39.04 3.06
531 532 8.900983 TTAATACTTGCATGCATGTAGTCATA 57.099 30.769 35.19 25.50 39.04 2.15
532 533 7.806409 AATACTTGCATGCATGTAGTCATAA 57.194 32.000 35.26 22.09 39.04 1.90
533 534 7.991084 ATACTTGCATGCATGTAGTCATAAT 57.009 32.000 35.26 23.00 39.04 1.28
534 535 6.068473 ACTTGCATGCATGTAGTCATAATG 57.932 37.500 31.27 7.37 33.44 1.90
535 536 5.824097 ACTTGCATGCATGTAGTCATAATGA 59.176 36.000 31.27 7.97 33.13 2.57
536 537 7.041848 TACTTGCATGCATGTAGTCATAATGAC 60.042 37.037 31.61 11.09 39.70 3.06
549 550 6.727824 GTCATAATGACACTGTGCTACTTT 57.272 37.500 7.90 7.05 46.22 2.66
550 551 6.766084 GTCATAATGACACTGTGCTACTTTC 58.234 40.000 7.90 0.00 46.22 2.62
551 552 6.591834 GTCATAATGACACTGTGCTACTTTCT 59.408 38.462 7.90 0.00 46.22 2.52
552 553 7.118390 GTCATAATGACACTGTGCTACTTTCTT 59.882 37.037 7.90 0.00 46.22 2.52
553 554 5.931441 AATGACACTGTGCTACTTTCTTC 57.069 39.130 7.90 0.00 0.00 2.87
554 555 4.400529 TGACACTGTGCTACTTTCTTCA 57.599 40.909 7.90 0.00 0.00 3.02
555 556 4.119862 TGACACTGTGCTACTTTCTTCAC 58.880 43.478 7.90 0.00 0.00 3.18
556 557 4.119862 GACACTGTGCTACTTTCTTCACA 58.880 43.478 7.90 0.00 37.78 3.58
557 558 4.708177 ACACTGTGCTACTTTCTTCACAT 58.292 39.130 7.90 0.00 38.56 3.21
558 559 5.126067 ACACTGTGCTACTTTCTTCACATT 58.874 37.500 7.90 0.00 38.56 2.71
559 560 5.590259 ACACTGTGCTACTTTCTTCACATTT 59.410 36.000 7.90 0.00 38.56 2.32
560 561 6.138761 CACTGTGCTACTTTCTTCACATTTC 58.861 40.000 0.00 0.00 38.56 2.17
561 562 6.017605 CACTGTGCTACTTTCTTCACATTTCT 60.018 38.462 0.00 0.00 38.56 2.52
562 563 6.543831 ACTGTGCTACTTTCTTCACATTTCTT 59.456 34.615 0.00 0.00 38.56 2.52
563 564 6.959361 TGTGCTACTTTCTTCACATTTCTTC 58.041 36.000 0.00 0.00 34.87 2.87
564 565 6.767902 TGTGCTACTTTCTTCACATTTCTTCT 59.232 34.615 0.00 0.00 34.87 2.85
565 566 7.283127 TGTGCTACTTTCTTCACATTTCTTCTT 59.717 33.333 0.00 0.00 34.87 2.52
566 567 7.800847 GTGCTACTTTCTTCACATTTCTTCTTC 59.199 37.037 0.00 0.00 0.00 2.87
567 568 7.716998 TGCTACTTTCTTCACATTTCTTCTTCT 59.283 33.333 0.00 0.00 0.00 2.85
568 569 8.563732 GCTACTTTCTTCACATTTCTTCTTCTT 58.436 33.333 0.00 0.00 0.00 2.52
571 572 7.704047 ACTTTCTTCACATTTCTTCTTCTTTGC 59.296 33.333 0.00 0.00 0.00 3.68
572 573 6.698008 TCTTCACATTTCTTCTTCTTTGCA 57.302 33.333 0.00 0.00 0.00 4.08
573 574 7.281040 TCTTCACATTTCTTCTTCTTTGCAT 57.719 32.000 0.00 0.00 0.00 3.96
574 575 7.143340 TCTTCACATTTCTTCTTCTTTGCATG 58.857 34.615 0.00 0.00 0.00 4.06
575 576 5.224888 TCACATTTCTTCTTCTTTGCATGC 58.775 37.500 11.82 11.82 0.00 4.06
576 577 4.986034 CACATTTCTTCTTCTTTGCATGCA 59.014 37.500 18.46 18.46 0.00 3.96
577 578 5.637810 CACATTTCTTCTTCTTTGCATGCAT 59.362 36.000 23.37 0.00 0.00 3.96
578 579 5.637810 ACATTTCTTCTTCTTTGCATGCATG 59.362 36.000 23.37 22.70 0.00 4.06
593 594 4.751060 CATGCATGCATATTAATGACCCC 58.249 43.478 31.73 0.00 34.84 4.95
594 595 2.819019 TGCATGCATATTAATGACCCCG 59.181 45.455 18.46 0.00 34.84 5.73
595 596 2.164219 GCATGCATATTAATGACCCCGG 59.836 50.000 14.21 0.00 34.84 5.73
596 597 3.420893 CATGCATATTAATGACCCCGGT 58.579 45.455 0.00 0.00 34.84 5.28
597 598 3.586470 TGCATATTAATGACCCCGGTT 57.414 42.857 0.00 0.00 34.84 4.44
598 599 4.708576 TGCATATTAATGACCCCGGTTA 57.291 40.909 0.00 0.00 34.84 2.85
599 600 5.050126 TGCATATTAATGACCCCGGTTAA 57.950 39.130 0.00 0.00 34.84 2.01
600 601 4.822896 TGCATATTAATGACCCCGGTTAAC 59.177 41.667 0.00 0.00 34.84 2.01
601 602 4.083696 GCATATTAATGACCCCGGTTAACG 60.084 45.833 0.00 0.00 37.56 3.18
602 603 5.299148 CATATTAATGACCCCGGTTAACGA 58.701 41.667 0.00 0.00 39.19 3.85
603 604 5.407387 CATATTAATGACCCCGGTTAACGAG 59.593 44.000 0.00 0.00 39.19 4.18
604 605 6.739286 CATATTAATGACCCCGGTTAACGAGA 60.739 42.308 0.00 0.00 39.19 4.04
605 606 8.165658 CATATTAATGACCCCGGTTAACGAGAA 61.166 40.741 0.00 0.00 39.19 2.87
616 617 5.996669 GGTTAACGAGAAGAAAAGTTGGA 57.003 39.130 0.00 0.00 0.00 3.53
617 618 6.555812 GGTTAACGAGAAGAAAAGTTGGAT 57.444 37.500 0.00 0.00 0.00 3.41
618 619 6.967135 GGTTAACGAGAAGAAAAGTTGGATT 58.033 36.000 0.00 0.00 0.00 3.01
619 620 7.423199 GGTTAACGAGAAGAAAAGTTGGATTT 58.577 34.615 0.00 0.00 0.00 2.17
620 621 7.590322 GGTTAACGAGAAGAAAAGTTGGATTTC 59.410 37.037 0.00 0.00 37.11 2.17
621 622 6.693315 AACGAGAAGAAAAGTTGGATTTCA 57.307 33.333 0.00 0.00 38.86 2.69
622 623 6.693315 ACGAGAAGAAAAGTTGGATTTCAA 57.307 33.333 0.00 0.00 38.86 2.69
623 624 7.095695 ACGAGAAGAAAAGTTGGATTTCAAA 57.904 32.000 0.00 0.00 38.86 2.69
624 625 7.543756 ACGAGAAGAAAAGTTGGATTTCAAAA 58.456 30.769 0.00 0.00 38.86 2.44
625 626 7.488150 ACGAGAAGAAAAGTTGGATTTCAAAAC 59.512 33.333 0.00 0.00 38.86 2.43
626 627 7.487829 CGAGAAGAAAAGTTGGATTTCAAAACA 59.512 33.333 2.32 0.00 38.86 2.83
627 628 8.707938 AGAAGAAAAGTTGGATTTCAAAACAG 57.292 30.769 2.32 0.00 38.86 3.16
628 629 8.314021 AGAAGAAAAGTTGGATTTCAAAACAGT 58.686 29.630 2.32 0.00 38.86 3.55
629 630 8.479313 AAGAAAAGTTGGATTTCAAAACAGTC 57.521 30.769 2.32 0.00 38.86 3.51
630 631 7.610865 AGAAAAGTTGGATTTCAAAACAGTCA 58.389 30.769 2.32 0.00 38.86 3.41
631 632 8.260114 AGAAAAGTTGGATTTCAAAACAGTCAT 58.740 29.630 2.32 0.00 38.86 3.06
632 633 8.791327 AAAAGTTGGATTTCAAAACAGTCATT 57.209 26.923 0.00 0.00 37.08 2.57
633 634 7.775397 AAGTTGGATTTCAAAACAGTCATTG 57.225 32.000 0.00 0.00 37.08 2.82
634 635 7.111247 AGTTGGATTTCAAAACAGTCATTGA 57.889 32.000 0.00 0.00 37.08 2.57
635 636 7.555087 AGTTGGATTTCAAAACAGTCATTGAA 58.445 30.769 9.38 9.38 42.17 2.69
636 637 8.206189 AGTTGGATTTCAAAACAGTCATTGAAT 58.794 29.630 12.76 6.12 43.04 2.57
637 638 8.829612 GTTGGATTTCAAAACAGTCATTGAATT 58.170 29.630 12.76 10.30 43.04 2.17
638 639 8.961294 TGGATTTCAAAACAGTCATTGAATTT 57.039 26.923 12.76 6.46 43.04 1.82
639 640 9.393512 TGGATTTCAAAACAGTCATTGAATTTT 57.606 25.926 12.76 0.00 43.04 1.82
643 644 9.883142 TTTCAAAACAGTCATTGAATTTTACCT 57.117 25.926 12.76 0.00 43.04 3.08
644 645 9.883142 TTCAAAACAGTCATTGAATTTTACCTT 57.117 25.926 9.38 0.00 39.81 3.50
645 646 9.311916 TCAAAACAGTCATTGAATTTTACCTTG 57.688 29.630 0.36 0.00 32.89 3.61
646 647 8.550376 CAAAACAGTCATTGAATTTTACCTTGG 58.450 33.333 0.00 0.00 0.00 3.61
647 648 6.976934 ACAGTCATTGAATTTTACCTTGGT 57.023 33.333 0.00 0.00 0.00 3.67
648 649 8.472007 AACAGTCATTGAATTTTACCTTGGTA 57.528 30.769 0.00 0.00 0.00 3.25
649 650 8.650143 ACAGTCATTGAATTTTACCTTGGTAT 57.350 30.769 0.00 0.00 0.00 2.73
650 651 8.739972 ACAGTCATTGAATTTTACCTTGGTATC 58.260 33.333 0.00 0.00 0.00 2.24
651 652 8.960591 CAGTCATTGAATTTTACCTTGGTATCT 58.039 33.333 0.00 0.00 0.00 1.98
652 653 8.960591 AGTCATTGAATTTTACCTTGGTATCTG 58.039 33.333 0.00 0.00 0.00 2.90
653 654 8.739972 GTCATTGAATTTTACCTTGGTATCTGT 58.260 33.333 0.00 0.00 0.00 3.41
654 655 9.967451 TCATTGAATTTTACCTTGGTATCTGTA 57.033 29.630 0.00 0.00 0.00 2.74
665 666 8.964476 ACCTTGGTATCTGTAATATGAGTTTG 57.036 34.615 0.00 0.00 0.00 2.93
666 667 8.548877 ACCTTGGTATCTGTAATATGAGTTTGT 58.451 33.333 0.00 0.00 0.00 2.83
667 668 9.396022 CCTTGGTATCTGTAATATGAGTTTGTT 57.604 33.333 0.00 0.00 0.00 2.83
669 670 8.208718 TGGTATCTGTAATATGAGTTTGTTGC 57.791 34.615 0.00 0.00 0.00 4.17
670 671 7.282224 TGGTATCTGTAATATGAGTTTGTTGCC 59.718 37.037 0.00 0.00 0.00 4.52
671 672 7.499232 GGTATCTGTAATATGAGTTTGTTGCCT 59.501 37.037 0.00 0.00 0.00 4.75
672 673 7.944729 ATCTGTAATATGAGTTTGTTGCCTT 57.055 32.000 0.00 0.00 0.00 4.35
673 674 7.144722 TCTGTAATATGAGTTTGTTGCCTTG 57.855 36.000 0.00 0.00 0.00 3.61
674 675 6.714810 TCTGTAATATGAGTTTGTTGCCTTGT 59.285 34.615 0.00 0.00 0.00 3.16
675 676 7.880713 TCTGTAATATGAGTTTGTTGCCTTGTA 59.119 33.333 0.00 0.00 0.00 2.41
676 677 8.574251 TGTAATATGAGTTTGTTGCCTTGTAT 57.426 30.769 0.00 0.00 0.00 2.29
677 678 9.674068 TGTAATATGAGTTTGTTGCCTTGTATA 57.326 29.630 0.00 0.00 0.00 1.47
705 706 8.197439 GGGAATGTAGGGAGTAAATCAAAATTG 58.803 37.037 0.00 0.00 0.00 2.32
756 757 3.535962 GGAGAGAGAGGCGCAGGG 61.536 72.222 10.83 0.00 0.00 4.45
772 773 2.613223 GCAGGGGCTAATCTAACGATCC 60.613 54.545 0.00 0.00 36.96 3.36
810 814 5.073311 GCTTATTAGCCATCGGAGTGATA 57.927 43.478 0.00 0.00 41.74 2.15
829 833 6.260936 AGTGATAATAGATTTCGTTTGCCCAG 59.739 38.462 0.00 0.00 0.00 4.45
830 834 6.260050 GTGATAATAGATTTCGTTTGCCCAGA 59.740 38.462 0.00 0.00 0.00 3.86
831 835 6.483307 TGATAATAGATTTCGTTTGCCCAGAG 59.517 38.462 0.00 0.00 0.00 3.35
832 836 1.826385 AGATTTCGTTTGCCCAGAGG 58.174 50.000 0.00 0.00 0.00 3.69
1215 6343 7.494952 AGGTATGAAAACTAATTACTTCCTCGC 59.505 37.037 0.00 0.00 0.00 5.03
1255 6450 7.197071 ACTGCAACACTTATTTTGTATCGAA 57.803 32.000 0.00 0.00 0.00 3.71
1256 6451 7.075741 ACTGCAACACTTATTTTGTATCGAAC 58.924 34.615 0.00 0.00 0.00 3.95
1257 6452 6.960468 TGCAACACTTATTTTGTATCGAACA 58.040 32.000 0.00 0.00 35.88 3.18
1266 6519 5.591643 TTTTGTATCGAACAGAACAGAGC 57.408 39.130 0.00 0.00 39.87 4.09
1297 6550 2.095059 GCGAGGTAGGACGAACACTAAA 60.095 50.000 0.00 0.00 0.00 1.85
1452 6705 2.100252 TGTATGTAGTCCGTAAGCAGGC 59.900 50.000 0.00 0.00 0.00 4.85
1548 6906 5.257082 ACATCATTTTTAATGCCCGTACC 57.743 39.130 0.00 0.00 0.00 3.34
2092 21770 5.220970 GCCTAAAGTGCAAGTTGAAGTAACA 60.221 40.000 7.16 0.00 41.88 2.41
2217 24878 1.399791 CTACCAACGTAGGTCGAGGAC 59.600 57.143 8.18 0.00 42.06 3.85
2235 24896 5.287274 CGAGGACGATGCATATGAGAATTAC 59.713 44.000 6.97 0.00 42.66 1.89
2237 24898 6.524734 AGGACGATGCATATGAGAATTACAA 58.475 36.000 6.97 0.00 0.00 2.41
2241 24902 6.763135 ACGATGCATATGAGAATTACAACACT 59.237 34.615 6.97 0.00 0.00 3.55
2279 24940 9.097257 CACACATATATTATATGCAATCCGTGA 57.903 33.333 19.24 0.00 0.00 4.35
2326 24987 5.971763 TGGAAATGTTACTTTGTTTGCAGT 58.028 33.333 0.00 0.00 30.25 4.40
2392 25059 8.741101 TTTTTGCTCAATCATATGTTGTGTAC 57.259 30.769 1.90 0.00 0.00 2.90
2494 25190 2.296190 CCCCTTGAAAACTAGTGGCAAC 59.704 50.000 0.00 0.00 0.00 4.17
2529 25225 8.511604 AATTGACGAGAACCAGATGATAAAAT 57.488 30.769 0.00 0.00 0.00 1.82
2698 25400 9.615295 TTTTACACCGCAATTAGATACTTTTTC 57.385 29.630 0.00 0.00 0.00 2.29
2742 25447 5.154932 CAGTAAACCAGAGAACGTGTAGAG 58.845 45.833 0.00 0.00 0.00 2.43
2824 25532 5.370679 AGTAAAGTTTTGGCCTTCTACGAA 58.629 37.500 3.32 0.00 0.00 3.85
2882 25590 4.019681 ACATAGGTCCTTCCATGACGAAAA 60.020 41.667 7.07 0.00 39.02 2.29
2966 25675 7.919385 ATTCATATTCAGGCAAAAACCCTAT 57.081 32.000 0.00 0.00 0.00 2.57
3184 26581 7.651808 TCCTGAAATTCAGTGAAATCAAAGAC 58.348 34.615 20.18 5.30 42.80 3.01
3188 26585 8.853126 TGAAATTCAGTGAAATCAAAGACATCT 58.147 29.630 17.61 0.00 0.00 2.90
3307 26704 1.625818 GCTGCTATACTATGTGGGGCT 59.374 52.381 0.00 0.00 0.00 5.19
3324 26721 4.229582 TGGGGCTACCATTCTCAGTTAAAT 59.770 41.667 0.00 0.00 46.80 1.40
3358 26755 2.902705 TGGAAAGGAATATAGCGCGT 57.097 45.000 8.43 0.00 0.00 6.01
3372 26769 2.264794 GCGTGGTCGGAACCTGAT 59.735 61.111 0.00 0.00 46.60 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.514441 TGCCCGAACTTGAAAAATACGTTA 59.486 37.500 0.00 0.00 0.00 3.18
39 40 3.315749 TGCCCGAACTTGAAAAATACGTT 59.684 39.130 0.00 0.00 0.00 3.99
50 51 2.489971 TCACTTTAGTGCCCGAACTTG 58.510 47.619 5.00 0.00 45.25 3.16
57 58 4.520492 CCATGGATATTCACTTTAGTGCCC 59.480 45.833 5.56 2.68 45.25 5.36
59 60 4.580167 TGCCATGGATATTCACTTTAGTGC 59.420 41.667 18.40 0.00 45.25 4.40
61 62 6.426587 ACTTGCCATGGATATTCACTTTAGT 58.573 36.000 18.40 0.80 0.00 2.24
72 73 2.016318 CGCTTGAACTTGCCATGGATA 58.984 47.619 18.40 0.00 0.00 2.59
75 76 1.444895 GCGCTTGAACTTGCCATGG 60.445 57.895 7.63 7.63 0.00 3.66
76 77 1.444895 GGCGCTTGAACTTGCCATG 60.445 57.895 7.64 0.00 46.76 3.66
97 98 1.001624 GTGTCGCGGTAATTGTACCC 58.998 55.000 6.13 0.00 46.38 3.69
101 102 3.071479 AGATTTGTGTCGCGGTAATTGT 58.929 40.909 6.13 0.00 0.00 2.71
109 110 0.443869 CCTCCAAGATTTGTGTCGCG 59.556 55.000 0.00 0.00 0.00 5.87
110 111 1.734465 CTCCTCCAAGATTTGTGTCGC 59.266 52.381 0.00 0.00 0.00 5.19
111 112 3.045601 ACTCCTCCAAGATTTGTGTCG 57.954 47.619 0.00 0.00 0.00 4.35
112 113 7.391833 AGAAATTACTCCTCCAAGATTTGTGTC 59.608 37.037 0.00 0.00 0.00 3.67
202 203 8.143835 GGCCTTGTATAGATGCAAAATGTAATT 58.856 33.333 0.00 0.00 38.98 1.40
203 204 7.287466 TGGCCTTGTATAGATGCAAAATGTAAT 59.713 33.333 3.32 0.00 32.12 1.89
204 205 6.605194 TGGCCTTGTATAGATGCAAAATGTAA 59.395 34.615 3.32 0.00 32.12 2.41
205 206 6.039270 GTGGCCTTGTATAGATGCAAAATGTA 59.961 38.462 3.32 0.00 32.12 2.29
206 207 4.955450 TGGCCTTGTATAGATGCAAAATGT 59.045 37.500 3.32 0.00 32.12 2.71
207 208 5.068198 AGTGGCCTTGTATAGATGCAAAATG 59.932 40.000 3.32 0.00 32.12 2.32
208 209 5.203528 AGTGGCCTTGTATAGATGCAAAAT 58.796 37.500 3.32 0.00 32.12 1.82
209 210 4.599041 AGTGGCCTTGTATAGATGCAAAA 58.401 39.130 3.32 0.00 32.12 2.44
210 211 4.235079 AGTGGCCTTGTATAGATGCAAA 57.765 40.909 3.32 0.00 32.12 3.68
211 212 3.931907 AGTGGCCTTGTATAGATGCAA 57.068 42.857 3.32 0.00 0.00 4.08
212 213 4.592778 TCATAGTGGCCTTGTATAGATGCA 59.407 41.667 3.32 0.00 0.00 3.96
213 214 5.152623 TCATAGTGGCCTTGTATAGATGC 57.847 43.478 3.32 0.00 0.00 3.91
214 215 8.627208 ATTTTCATAGTGGCCTTGTATAGATG 57.373 34.615 3.32 0.00 0.00 2.90
216 217 9.555727 GTAATTTTCATAGTGGCCTTGTATAGA 57.444 33.333 3.32 0.00 0.00 1.98
217 218 8.784043 GGTAATTTTCATAGTGGCCTTGTATAG 58.216 37.037 3.32 0.00 0.00 1.31
218 219 8.499406 AGGTAATTTTCATAGTGGCCTTGTATA 58.501 33.333 3.32 0.00 0.00 1.47
219 220 7.354312 AGGTAATTTTCATAGTGGCCTTGTAT 58.646 34.615 3.32 0.00 0.00 2.29
220 221 6.727394 AGGTAATTTTCATAGTGGCCTTGTA 58.273 36.000 3.32 0.00 0.00 2.41
221 222 5.580022 AGGTAATTTTCATAGTGGCCTTGT 58.420 37.500 3.32 0.00 0.00 3.16
222 223 6.530019 AAGGTAATTTTCATAGTGGCCTTG 57.470 37.500 3.32 0.00 33.19 3.61
223 224 7.386059 CAAAAGGTAATTTTCATAGTGGCCTT 58.614 34.615 3.32 0.00 39.11 4.35
224 225 6.574269 GCAAAAGGTAATTTTCATAGTGGCCT 60.574 38.462 3.32 0.00 39.11 5.19
225 226 5.580691 GCAAAAGGTAATTTTCATAGTGGCC 59.419 40.000 0.00 0.00 39.11 5.36
226 227 6.162777 TGCAAAAGGTAATTTTCATAGTGGC 58.837 36.000 0.00 0.00 39.11 5.01
227 228 8.253113 AGATGCAAAAGGTAATTTTCATAGTGG 58.747 33.333 0.00 0.00 39.11 4.00
236 237 9.700831 AGGAAGTATAGATGCAAAAGGTAATTT 57.299 29.630 0.00 0.00 0.00 1.82
237 238 9.343539 GAGGAAGTATAGATGCAAAAGGTAATT 57.656 33.333 0.00 0.00 0.00 1.40
238 239 8.718656 AGAGGAAGTATAGATGCAAAAGGTAAT 58.281 33.333 0.00 0.00 0.00 1.89
239 240 8.090788 AGAGGAAGTATAGATGCAAAAGGTAA 57.909 34.615 0.00 0.00 0.00 2.85
240 241 7.676683 AGAGGAAGTATAGATGCAAAAGGTA 57.323 36.000 0.00 0.00 0.00 3.08
241 242 6.567602 AGAGGAAGTATAGATGCAAAAGGT 57.432 37.500 0.00 0.00 0.00 3.50
242 243 9.213799 GAATAGAGGAAGTATAGATGCAAAAGG 57.786 37.037 0.00 0.00 0.00 3.11
243 244 9.770097 TGAATAGAGGAAGTATAGATGCAAAAG 57.230 33.333 0.00 0.00 0.00 2.27
245 246 9.770097 CTTGAATAGAGGAAGTATAGATGCAAA 57.230 33.333 0.00 0.00 0.00 3.68
246 247 7.875041 GCTTGAATAGAGGAAGTATAGATGCAA 59.125 37.037 0.00 0.00 0.00 4.08
247 248 7.234371 AGCTTGAATAGAGGAAGTATAGATGCA 59.766 37.037 0.00 0.00 0.00 3.96
248 249 7.610865 AGCTTGAATAGAGGAAGTATAGATGC 58.389 38.462 0.00 0.00 0.00 3.91
249 250 7.967854 CGAGCTTGAATAGAGGAAGTATAGATG 59.032 40.741 0.00 0.00 0.00 2.90
250 251 7.122055 CCGAGCTTGAATAGAGGAAGTATAGAT 59.878 40.741 1.22 0.00 0.00 1.98
251 252 6.431543 CCGAGCTTGAATAGAGGAAGTATAGA 59.568 42.308 1.22 0.00 0.00 1.98
252 253 6.349777 CCCGAGCTTGAATAGAGGAAGTATAG 60.350 46.154 1.22 0.00 0.00 1.31
253 254 5.477291 CCCGAGCTTGAATAGAGGAAGTATA 59.523 44.000 1.22 0.00 0.00 1.47
254 255 4.282195 CCCGAGCTTGAATAGAGGAAGTAT 59.718 45.833 1.22 0.00 0.00 2.12
255 256 3.637229 CCCGAGCTTGAATAGAGGAAGTA 59.363 47.826 1.22 0.00 0.00 2.24
256 257 2.432510 CCCGAGCTTGAATAGAGGAAGT 59.567 50.000 1.22 0.00 0.00 3.01
257 258 2.432510 ACCCGAGCTTGAATAGAGGAAG 59.567 50.000 1.22 0.00 0.00 3.46
258 259 2.168521 CACCCGAGCTTGAATAGAGGAA 59.831 50.000 1.22 0.00 0.00 3.36
259 260 1.757118 CACCCGAGCTTGAATAGAGGA 59.243 52.381 1.22 0.00 0.00 3.71
260 261 1.757118 TCACCCGAGCTTGAATAGAGG 59.243 52.381 1.22 0.00 0.00 3.69
261 262 3.131223 TCTTCACCCGAGCTTGAATAGAG 59.869 47.826 1.22 0.00 31.41 2.43
262 263 3.096852 TCTTCACCCGAGCTTGAATAGA 58.903 45.455 1.22 0.00 31.41 1.98
263 264 3.526931 TCTTCACCCGAGCTTGAATAG 57.473 47.619 1.22 0.00 31.41 1.73
264 265 3.260884 ACTTCTTCACCCGAGCTTGAATA 59.739 43.478 1.22 0.00 31.41 1.75
265 266 2.039084 ACTTCTTCACCCGAGCTTGAAT 59.961 45.455 1.22 0.00 31.41 2.57
266 267 1.416401 ACTTCTTCACCCGAGCTTGAA 59.584 47.619 1.22 0.00 0.00 2.69
267 268 1.048601 ACTTCTTCACCCGAGCTTGA 58.951 50.000 1.22 0.00 0.00 3.02
268 269 1.151668 CACTTCTTCACCCGAGCTTG 58.848 55.000 0.00 0.00 0.00 4.01
269 270 1.048601 TCACTTCTTCACCCGAGCTT 58.951 50.000 0.00 0.00 0.00 3.74
270 271 1.270907 ATCACTTCTTCACCCGAGCT 58.729 50.000 0.00 0.00 0.00 4.09
271 272 2.961526 TATCACTTCTTCACCCGAGC 57.038 50.000 0.00 0.00 0.00 5.03
272 273 4.363999 GACATATCACTTCTTCACCCGAG 58.636 47.826 0.00 0.00 0.00 4.63
273 274 3.132289 GGACATATCACTTCTTCACCCGA 59.868 47.826 0.00 0.00 0.00 5.14
274 275 3.458189 GGACATATCACTTCTTCACCCG 58.542 50.000 0.00 0.00 0.00 5.28
275 276 3.433740 GGGGACATATCACTTCTTCACCC 60.434 52.174 0.00 0.00 0.00 4.61
276 277 3.456277 AGGGGACATATCACTTCTTCACC 59.544 47.826 0.00 0.00 0.00 4.02
277 278 4.762289 AGGGGACATATCACTTCTTCAC 57.238 45.455 0.00 0.00 0.00 3.18
278 279 5.779241 AAAGGGGACATATCACTTCTTCA 57.221 39.130 0.00 0.00 0.00 3.02
279 280 5.590663 GGAAAAGGGGACATATCACTTCTTC 59.409 44.000 0.00 0.00 0.00 2.87
280 281 5.254032 AGGAAAAGGGGACATATCACTTCTT 59.746 40.000 0.00 0.00 0.00 2.52
281 282 4.790790 AGGAAAAGGGGACATATCACTTCT 59.209 41.667 0.00 0.00 0.00 2.85
282 283 5.117406 AGGAAAAGGGGACATATCACTTC 57.883 43.478 0.00 0.00 0.00 3.01
283 284 5.536497 AAGGAAAAGGGGACATATCACTT 57.464 39.130 0.00 0.00 0.00 3.16
284 285 5.731678 ACTAAGGAAAAGGGGACATATCACT 59.268 40.000 0.00 0.00 0.00 3.41
285 286 5.823045 CACTAAGGAAAAGGGGACATATCAC 59.177 44.000 0.00 0.00 0.00 3.06
286 287 5.729229 TCACTAAGGAAAAGGGGACATATCA 59.271 40.000 0.00 0.00 0.00 2.15
287 288 6.248569 TCACTAAGGAAAAGGGGACATATC 57.751 41.667 0.00 0.00 0.00 1.63
288 289 6.447084 TCTTCACTAAGGAAAAGGGGACATAT 59.553 38.462 0.00 0.00 33.22 1.78
289 290 5.788533 TCTTCACTAAGGAAAAGGGGACATA 59.211 40.000 0.00 0.00 33.22 2.29
290 291 4.601857 TCTTCACTAAGGAAAAGGGGACAT 59.398 41.667 0.00 0.00 33.22 3.06
291 292 3.977999 TCTTCACTAAGGAAAAGGGGACA 59.022 43.478 0.00 0.00 33.22 4.02
292 293 4.565861 CCTCTTCACTAAGGAAAAGGGGAC 60.566 50.000 0.00 0.00 41.13 4.46
293 294 3.587506 CCTCTTCACTAAGGAAAAGGGGA 59.412 47.826 0.00 0.00 41.13 4.81
294 295 3.308473 CCCTCTTCACTAAGGAAAAGGGG 60.308 52.174 6.45 0.00 38.58 4.79
295 296 3.587506 TCCCTCTTCACTAAGGAAAAGGG 59.412 47.826 7.81 7.81 41.46 3.95
296 297 4.041691 TGTCCCTCTTCACTAAGGAAAAGG 59.958 45.833 0.00 0.00 34.35 3.11
297 298 5.228945 TGTCCCTCTTCACTAAGGAAAAG 57.771 43.478 0.00 0.00 34.35 2.27
298 299 5.560724 CATGTCCCTCTTCACTAAGGAAAA 58.439 41.667 0.00 0.00 34.35 2.29
299 300 4.565652 GCATGTCCCTCTTCACTAAGGAAA 60.566 45.833 0.00 0.00 34.35 3.13
300 301 3.055094 GCATGTCCCTCTTCACTAAGGAA 60.055 47.826 0.00 0.00 34.35 3.36
301 302 2.501723 GCATGTCCCTCTTCACTAAGGA 59.498 50.000 0.00 0.00 34.35 3.36
302 303 2.739932 CGCATGTCCCTCTTCACTAAGG 60.740 54.545 0.00 0.00 33.22 2.69
303 304 2.544685 CGCATGTCCCTCTTCACTAAG 58.455 52.381 0.00 0.00 0.00 2.18
304 305 1.405526 GCGCATGTCCCTCTTCACTAA 60.406 52.381 0.30 0.00 0.00 2.24
305 306 0.175760 GCGCATGTCCCTCTTCACTA 59.824 55.000 0.30 0.00 0.00 2.74
306 307 1.078848 GCGCATGTCCCTCTTCACT 60.079 57.895 0.30 0.00 0.00 3.41
307 308 1.078848 AGCGCATGTCCCTCTTCAC 60.079 57.895 11.47 0.00 0.00 3.18
308 309 1.078918 CAGCGCATGTCCCTCTTCA 60.079 57.895 11.47 0.00 0.00 3.02
309 310 1.817099 CCAGCGCATGTCCCTCTTC 60.817 63.158 11.47 0.00 0.00 2.87
310 311 2.129555 AACCAGCGCATGTCCCTCTT 62.130 55.000 11.47 0.00 0.00 2.85
311 312 2.129555 AAACCAGCGCATGTCCCTCT 62.130 55.000 11.47 0.00 0.00 3.69
312 313 1.244019 AAAACCAGCGCATGTCCCTC 61.244 55.000 11.47 0.00 0.00 4.30
313 314 0.827507 AAAAACCAGCGCATGTCCCT 60.828 50.000 11.47 0.00 0.00 4.20
314 315 1.665442 AAAAACCAGCGCATGTCCC 59.335 52.632 11.47 0.00 0.00 4.46
339 340 7.740805 ACAGGACTGAAAAGATAGGATAATCC 58.259 38.462 6.29 0.00 36.58 3.01
343 344 9.213777 ACATTACAGGACTGAAAAGATAGGATA 57.786 33.333 6.29 0.00 0.00 2.59
344 345 8.095452 ACATTACAGGACTGAAAAGATAGGAT 57.905 34.615 6.29 0.00 0.00 3.24
345 346 7.180229 TGACATTACAGGACTGAAAAGATAGGA 59.820 37.037 6.29 0.00 0.00 2.94
346 347 7.331026 TGACATTACAGGACTGAAAAGATAGG 58.669 38.462 6.29 0.00 0.00 2.57
347 348 8.777865 TTGACATTACAGGACTGAAAAGATAG 57.222 34.615 6.29 0.00 0.00 2.08
349 350 9.911788 ATATTGACATTACAGGACTGAAAAGAT 57.088 29.630 6.29 0.00 0.00 2.40
350 351 9.739276 AATATTGACATTACAGGACTGAAAAGA 57.261 29.630 6.29 0.00 0.00 2.52
353 354 8.243426 GCAAATATTGACATTACAGGACTGAAA 58.757 33.333 6.29 0.00 0.00 2.69
354 355 7.413988 CGCAAATATTGACATTACAGGACTGAA 60.414 37.037 6.29 0.00 0.00 3.02
355 356 6.037062 CGCAAATATTGACATTACAGGACTGA 59.963 38.462 6.29 0.00 0.00 3.41
356 357 6.183360 ACGCAAATATTGACATTACAGGACTG 60.183 38.462 0.00 0.00 0.00 3.51
357 358 5.880332 ACGCAAATATTGACATTACAGGACT 59.120 36.000 0.00 0.00 0.00 3.85
358 359 5.965334 CACGCAAATATTGACATTACAGGAC 59.035 40.000 0.00 0.00 0.00 3.85
359 360 5.065859 CCACGCAAATATTGACATTACAGGA 59.934 40.000 0.00 0.00 0.00 3.86
360 361 5.273170 CCACGCAAATATTGACATTACAGG 58.727 41.667 0.00 0.00 0.00 4.00
361 362 4.734854 GCCACGCAAATATTGACATTACAG 59.265 41.667 0.00 0.00 0.00 2.74
362 363 4.397730 AGCCACGCAAATATTGACATTACA 59.602 37.500 0.00 0.00 0.00 2.41
363 364 4.920376 AGCCACGCAAATATTGACATTAC 58.080 39.130 0.00 0.00 0.00 1.89
364 365 5.105957 ACAAGCCACGCAAATATTGACATTA 60.106 36.000 0.00 0.00 0.00 1.90
365 366 4.175516 CAAGCCACGCAAATATTGACATT 58.824 39.130 0.00 0.00 0.00 2.71
366 367 3.193267 ACAAGCCACGCAAATATTGACAT 59.807 39.130 0.00 0.00 0.00 3.06
367 368 2.556189 ACAAGCCACGCAAATATTGACA 59.444 40.909 0.00 0.00 0.00 3.58
368 369 3.216147 ACAAGCCACGCAAATATTGAC 57.784 42.857 0.00 0.00 0.00 3.18
369 370 4.457603 ACTTACAAGCCACGCAAATATTGA 59.542 37.500 0.00 0.00 0.00 2.57
370 371 4.558470 CACTTACAAGCCACGCAAATATTG 59.442 41.667 0.00 0.00 0.00 1.90
371 372 4.457603 TCACTTACAAGCCACGCAAATATT 59.542 37.500 0.00 0.00 0.00 1.28
372 373 4.006989 TCACTTACAAGCCACGCAAATAT 58.993 39.130 0.00 0.00 0.00 1.28
373 374 3.403968 TCACTTACAAGCCACGCAAATA 58.596 40.909 0.00 0.00 0.00 1.40
374 375 2.226330 TCACTTACAAGCCACGCAAAT 58.774 42.857 0.00 0.00 0.00 2.32
375 376 1.669604 TCACTTACAAGCCACGCAAA 58.330 45.000 0.00 0.00 0.00 3.68
376 377 1.669604 TTCACTTACAAGCCACGCAA 58.330 45.000 0.00 0.00 0.00 4.85
377 378 1.890876 ATTCACTTACAAGCCACGCA 58.109 45.000 0.00 0.00 0.00 5.24
378 379 2.989422 AATTCACTTACAAGCCACGC 57.011 45.000 0.00 0.00 0.00 5.34
379 380 7.867445 AATAAAAATTCACTTACAAGCCACG 57.133 32.000 0.00 0.00 0.00 4.94
406 407 9.734620 TTGCGTAGTAATACGTGTCTTATTAAT 57.265 29.630 22.09 0.00 44.53 1.40
407 408 9.566530 TTTGCGTAGTAATACGTGTCTTATTAA 57.433 29.630 22.09 3.91 44.53 1.40
408 409 9.566530 TTTTGCGTAGTAATACGTGTCTTATTA 57.433 29.630 22.09 0.00 44.53 0.98
409 410 8.464770 TTTTGCGTAGTAATACGTGTCTTATT 57.535 30.769 22.09 0.00 44.53 1.40
410 411 8.464770 TTTTTGCGTAGTAATACGTGTCTTAT 57.535 30.769 22.09 0.00 44.53 1.73
411 412 7.865875 TTTTTGCGTAGTAATACGTGTCTTA 57.134 32.000 22.09 3.64 44.53 2.10
412 413 6.768029 TTTTTGCGTAGTAATACGTGTCTT 57.232 33.333 22.09 0.00 44.53 3.01
433 434 8.644374 TGTTAGTGCCCTTGTATAGAATTTTT 57.356 30.769 0.00 0.00 0.00 1.94
434 435 8.644374 TTGTTAGTGCCCTTGTATAGAATTTT 57.356 30.769 0.00 0.00 0.00 1.82
435 436 8.823220 ATTGTTAGTGCCCTTGTATAGAATTT 57.177 30.769 0.00 0.00 0.00 1.82
436 437 9.914834 TTATTGTTAGTGCCCTTGTATAGAATT 57.085 29.630 0.00 0.00 0.00 2.17
438 439 9.555727 GATTATTGTTAGTGCCCTTGTATAGAA 57.444 33.333 0.00 0.00 0.00 2.10
439 440 7.870954 CGATTATTGTTAGTGCCCTTGTATAGA 59.129 37.037 0.00 0.00 0.00 1.98
440 441 7.870954 TCGATTATTGTTAGTGCCCTTGTATAG 59.129 37.037 0.00 0.00 0.00 1.31
441 442 7.728148 TCGATTATTGTTAGTGCCCTTGTATA 58.272 34.615 0.00 0.00 0.00 1.47
442 443 6.588204 TCGATTATTGTTAGTGCCCTTGTAT 58.412 36.000 0.00 0.00 0.00 2.29
443 444 5.979993 TCGATTATTGTTAGTGCCCTTGTA 58.020 37.500 0.00 0.00 0.00 2.41
444 445 4.839121 TCGATTATTGTTAGTGCCCTTGT 58.161 39.130 0.00 0.00 0.00 3.16
445 446 5.006746 GTCTCGATTATTGTTAGTGCCCTTG 59.993 44.000 0.00 0.00 0.00 3.61
446 447 5.116882 GTCTCGATTATTGTTAGTGCCCTT 58.883 41.667 0.00 0.00 0.00 3.95
447 448 4.161565 TGTCTCGATTATTGTTAGTGCCCT 59.838 41.667 0.00 0.00 0.00 5.19
448 449 4.439057 TGTCTCGATTATTGTTAGTGCCC 58.561 43.478 0.00 0.00 0.00 5.36
449 450 6.417191 TTTGTCTCGATTATTGTTAGTGCC 57.583 37.500 0.00 0.00 0.00 5.01
450 451 8.895932 ATTTTTGTCTCGATTATTGTTAGTGC 57.104 30.769 0.00 0.00 0.00 4.40
461 462 9.480053 AAAACATCATCAATTTTTGTCTCGATT 57.520 25.926 0.00 0.00 0.00 3.34
462 463 9.132521 GAAAACATCATCAATTTTTGTCTCGAT 57.867 29.630 0.00 0.00 0.00 3.59
463 464 8.352201 AGAAAACATCATCAATTTTTGTCTCGA 58.648 29.630 0.00 0.00 0.00 4.04
464 465 8.511465 AGAAAACATCATCAATTTTTGTCTCG 57.489 30.769 0.00 0.00 0.00 4.04
465 466 9.467258 TGAGAAAACATCATCAATTTTTGTCTC 57.533 29.630 0.00 0.00 34.17 3.36
466 467 9.991906 ATGAGAAAACATCATCAATTTTTGTCT 57.008 25.926 0.00 0.00 34.17 3.41
473 474 9.399797 TGCTAGTATGAGAAAACATCATCAATT 57.600 29.630 0.00 0.00 38.36 2.32
474 475 8.969260 TGCTAGTATGAGAAAACATCATCAAT 57.031 30.769 0.00 0.00 38.36 2.57
475 476 8.668353 GTTGCTAGTATGAGAAAACATCATCAA 58.332 33.333 0.00 0.00 38.36 2.57
476 477 8.043113 AGTTGCTAGTATGAGAAAACATCATCA 58.957 33.333 0.00 0.00 38.36 3.07
477 478 8.430801 AGTTGCTAGTATGAGAAAACATCATC 57.569 34.615 0.00 0.00 38.36 2.92
478 479 8.671921 CAAGTTGCTAGTATGAGAAAACATCAT 58.328 33.333 0.00 0.00 40.45 2.45
479 480 7.661437 ACAAGTTGCTAGTATGAGAAAACATCA 59.339 33.333 1.81 0.00 0.00 3.07
480 481 8.034058 ACAAGTTGCTAGTATGAGAAAACATC 57.966 34.615 1.81 0.00 0.00 3.06
481 482 7.986085 ACAAGTTGCTAGTATGAGAAAACAT 57.014 32.000 1.81 0.00 0.00 2.71
482 483 7.801716 AACAAGTTGCTAGTATGAGAAAACA 57.198 32.000 1.81 0.00 0.00 2.83
490 491 9.490663 GCAAGTATTAAACAAGTTGCTAGTATG 57.509 33.333 15.67 0.00 44.79 2.39
498 499 7.116662 ACATGCATGCAAGTATTAAACAAGTTG 59.883 33.333 25.90 14.84 0.00 3.16
499 500 7.153985 ACATGCATGCAAGTATTAAACAAGTT 58.846 30.769 25.90 0.00 0.00 2.66
500 501 6.690530 ACATGCATGCAAGTATTAAACAAGT 58.309 32.000 25.90 0.43 0.00 3.16
501 502 7.970061 ACTACATGCATGCAAGTATTAAACAAG 59.030 33.333 29.78 21.31 31.16 3.16
502 503 7.825681 ACTACATGCATGCAAGTATTAAACAA 58.174 30.769 29.78 12.28 31.16 2.83
503 504 7.120432 TGACTACATGCATGCAAGTATTAAACA 59.880 33.333 29.78 21.68 31.16 2.83
504 505 7.471721 TGACTACATGCATGCAAGTATTAAAC 58.528 34.615 29.78 19.99 31.16 2.01
505 506 7.622893 TGACTACATGCATGCAAGTATTAAA 57.377 32.000 29.78 16.50 31.16 1.52
506 507 7.806409 ATGACTACATGCATGCAAGTATTAA 57.194 32.000 29.78 20.65 35.21 1.40
507 508 8.900983 TTATGACTACATGCATGCAAGTATTA 57.099 30.769 29.78 20.56 37.87 0.98
508 509 7.806409 TTATGACTACATGCATGCAAGTATT 57.194 32.000 29.78 25.52 37.87 1.89
509 510 7.662669 TCATTATGACTACATGCATGCAAGTAT 59.337 33.333 29.78 20.73 37.87 2.12
510 511 6.991531 TCATTATGACTACATGCATGCAAGTA 59.008 34.615 28.33 28.33 37.87 2.24
511 512 5.824097 TCATTATGACTACATGCATGCAAGT 59.176 36.000 29.11 29.11 37.87 3.16
512 513 6.140786 GTCATTATGACTACATGCATGCAAG 58.859 40.000 26.68 23.45 43.73 4.01
513 514 6.063640 GTCATTATGACTACATGCATGCAA 57.936 37.500 26.68 13.91 43.73 4.08
514 515 5.678132 GTCATTATGACTACATGCATGCA 57.322 39.130 26.53 25.04 43.73 3.96
527 528 6.701340 AGAAAGTAGCACAGTGTCATTATGA 58.299 36.000 1.61 0.00 0.00 2.15
528 529 6.974932 AGAAAGTAGCACAGTGTCATTATG 57.025 37.500 1.61 0.00 0.00 1.90
529 530 7.118390 GTGAAGAAAGTAGCACAGTGTCATTAT 59.882 37.037 1.61 0.00 0.00 1.28
530 531 6.423905 GTGAAGAAAGTAGCACAGTGTCATTA 59.576 38.462 1.61 0.00 0.00 1.90
531 532 5.237344 GTGAAGAAAGTAGCACAGTGTCATT 59.763 40.000 1.61 0.00 0.00 2.57
532 533 4.752101 GTGAAGAAAGTAGCACAGTGTCAT 59.248 41.667 1.61 0.00 0.00 3.06
533 534 4.119862 GTGAAGAAAGTAGCACAGTGTCA 58.880 43.478 1.61 0.00 0.00 3.58
534 535 4.119862 TGTGAAGAAAGTAGCACAGTGTC 58.880 43.478 1.61 0.00 36.44 3.67
535 536 4.137116 TGTGAAGAAAGTAGCACAGTGT 57.863 40.909 1.61 0.00 36.44 3.55
536 537 5.679734 AATGTGAAGAAAGTAGCACAGTG 57.320 39.130 0.00 0.00 43.55 3.66
537 538 6.058183 AGAAATGTGAAGAAAGTAGCACAGT 58.942 36.000 0.00 0.00 43.55 3.55
538 539 6.551385 AGAAATGTGAAGAAAGTAGCACAG 57.449 37.500 0.00 0.00 43.55 3.66
539 540 6.767902 AGAAGAAATGTGAAGAAAGTAGCACA 59.232 34.615 0.00 0.00 44.31 4.57
540 541 7.195839 AGAAGAAATGTGAAGAAAGTAGCAC 57.804 36.000 0.00 0.00 0.00 4.40
541 542 7.716998 AGAAGAAGAAATGTGAAGAAAGTAGCA 59.283 33.333 0.00 0.00 0.00 3.49
542 543 8.093659 AGAAGAAGAAATGTGAAGAAAGTAGC 57.906 34.615 0.00 0.00 0.00 3.58
545 546 7.704047 GCAAAGAAGAAGAAATGTGAAGAAAGT 59.296 33.333 0.00 0.00 0.00 2.66
546 547 7.703621 TGCAAAGAAGAAGAAATGTGAAGAAAG 59.296 33.333 0.00 0.00 0.00 2.62
547 548 7.546358 TGCAAAGAAGAAGAAATGTGAAGAAA 58.454 30.769 0.00 0.00 0.00 2.52
548 549 7.099266 TGCAAAGAAGAAGAAATGTGAAGAA 57.901 32.000 0.00 0.00 0.00 2.52
549 550 6.698008 TGCAAAGAAGAAGAAATGTGAAGA 57.302 33.333 0.00 0.00 0.00 2.87
550 551 6.128902 GCATGCAAAGAAGAAGAAATGTGAAG 60.129 38.462 14.21 0.00 0.00 3.02
551 552 5.693104 GCATGCAAAGAAGAAGAAATGTGAA 59.307 36.000 14.21 0.00 0.00 3.18
552 553 5.221283 TGCATGCAAAGAAGAAGAAATGTGA 60.221 36.000 20.30 0.00 0.00 3.58
553 554 4.986034 TGCATGCAAAGAAGAAGAAATGTG 59.014 37.500 20.30 0.00 0.00 3.21
554 555 5.204409 TGCATGCAAAGAAGAAGAAATGT 57.796 34.783 20.30 0.00 0.00 2.71
555 556 6.094739 CATGCATGCAAAGAAGAAGAAATG 57.905 37.500 26.68 9.62 0.00 2.32
571 572 4.675933 CGGGGTCATTAATATGCATGCATG 60.676 45.833 37.43 23.92 37.82 4.06
572 573 3.444742 CGGGGTCATTAATATGCATGCAT 59.555 43.478 33.92 33.92 40.19 3.96
573 574 2.819019 CGGGGTCATTAATATGCATGCA 59.181 45.455 25.04 25.04 0.00 3.96
574 575 2.164219 CCGGGGTCATTAATATGCATGC 59.836 50.000 11.82 11.82 0.00 4.06
575 576 3.420893 ACCGGGGTCATTAATATGCATG 58.579 45.455 10.16 0.00 0.00 4.06
576 577 3.806949 ACCGGGGTCATTAATATGCAT 57.193 42.857 6.32 3.79 0.00 3.96
577 578 3.586470 AACCGGGGTCATTAATATGCA 57.414 42.857 6.32 0.00 0.00 3.96
578 579 4.083696 CGTTAACCGGGGTCATTAATATGC 60.084 45.833 6.32 0.00 0.00 3.14
579 580 5.299148 TCGTTAACCGGGGTCATTAATATG 58.701 41.667 6.32 0.00 37.11 1.78
580 581 5.305128 TCTCGTTAACCGGGGTCATTAATAT 59.695 40.000 6.32 0.00 37.74 1.28
581 582 4.648762 TCTCGTTAACCGGGGTCATTAATA 59.351 41.667 6.32 0.00 37.74 0.98
582 583 3.451902 TCTCGTTAACCGGGGTCATTAAT 59.548 43.478 6.32 0.00 37.74 1.40
583 584 2.830923 TCTCGTTAACCGGGGTCATTAA 59.169 45.455 6.32 0.00 37.74 1.40
584 585 2.455557 TCTCGTTAACCGGGGTCATTA 58.544 47.619 6.32 0.00 37.74 1.90
585 586 1.269012 TCTCGTTAACCGGGGTCATT 58.731 50.000 6.32 0.00 37.74 2.57
586 587 1.206371 CTTCTCGTTAACCGGGGTCAT 59.794 52.381 6.32 0.00 37.74 3.06
587 588 0.604578 CTTCTCGTTAACCGGGGTCA 59.395 55.000 6.32 0.00 37.74 4.02
588 589 0.890683 TCTTCTCGTTAACCGGGGTC 59.109 55.000 6.32 0.00 37.74 4.46
589 590 1.341080 TTCTTCTCGTTAACCGGGGT 58.659 50.000 6.32 0.00 37.74 4.95
590 591 2.460757 TTTCTTCTCGTTAACCGGGG 57.539 50.000 6.32 0.00 37.74 5.73
591 592 3.396560 ACTTTTCTTCTCGTTAACCGGG 58.603 45.455 6.32 0.00 38.86 5.73
592 593 4.319261 CCAACTTTTCTTCTCGTTAACCGG 60.319 45.833 0.00 0.00 37.11 5.28
593 594 4.508861 TCCAACTTTTCTTCTCGTTAACCG 59.491 41.667 0.00 0.00 38.13 4.44
594 595 5.996669 TCCAACTTTTCTTCTCGTTAACC 57.003 39.130 0.00 0.00 0.00 2.85
595 596 8.126700 TGAAATCCAACTTTTCTTCTCGTTAAC 58.873 33.333 0.00 0.00 34.80 2.01
596 597 8.215926 TGAAATCCAACTTTTCTTCTCGTTAA 57.784 30.769 0.00 0.00 34.80 2.01
597 598 7.795482 TGAAATCCAACTTTTCTTCTCGTTA 57.205 32.000 0.00 0.00 34.80 3.18
598 599 6.693315 TGAAATCCAACTTTTCTTCTCGTT 57.307 33.333 0.00 0.00 34.80 3.85
599 600 6.693315 TTGAAATCCAACTTTTCTTCTCGT 57.307 33.333 0.00 0.00 34.80 4.18
600 601 7.487829 TGTTTTGAAATCCAACTTTTCTTCTCG 59.512 33.333 0.00 0.00 34.80 4.04
601 602 8.702163 TGTTTTGAAATCCAACTTTTCTTCTC 57.298 30.769 0.00 0.00 34.80 2.87
602 603 8.314021 ACTGTTTTGAAATCCAACTTTTCTTCT 58.686 29.630 0.00 0.00 34.80 2.85
603 604 8.479313 ACTGTTTTGAAATCCAACTTTTCTTC 57.521 30.769 0.00 0.00 34.80 2.87
604 605 8.093927 TGACTGTTTTGAAATCCAACTTTTCTT 58.906 29.630 0.00 0.00 34.80 2.52
605 606 7.610865 TGACTGTTTTGAAATCCAACTTTTCT 58.389 30.769 0.00 0.00 34.80 2.52
606 607 7.826260 TGACTGTTTTGAAATCCAACTTTTC 57.174 32.000 0.00 0.00 33.85 2.29
607 608 8.667463 CAATGACTGTTTTGAAATCCAACTTTT 58.333 29.630 0.00 0.00 33.85 2.27
608 609 8.040132 TCAATGACTGTTTTGAAATCCAACTTT 58.960 29.630 5.09 0.00 33.85 2.66
609 610 7.555087 TCAATGACTGTTTTGAAATCCAACTT 58.445 30.769 5.09 0.00 33.85 2.66
610 611 7.111247 TCAATGACTGTTTTGAAATCCAACT 57.889 32.000 5.09 0.00 33.85 3.16
611 612 7.769272 TTCAATGACTGTTTTGAAATCCAAC 57.231 32.000 13.90 0.00 38.52 3.77
612 613 8.961294 AATTCAATGACTGTTTTGAAATCCAA 57.039 26.923 17.84 2.22 43.04 3.53
613 614 8.961294 AAATTCAATGACTGTTTTGAAATCCA 57.039 26.923 17.84 2.74 43.04 3.41
617 618 9.883142 AGGTAAAATTCAATGACTGTTTTGAAA 57.117 25.926 17.84 5.24 43.04 2.69
618 619 9.883142 AAGGTAAAATTCAATGACTGTTTTGAA 57.117 25.926 16.85 16.85 43.70 2.69
619 620 9.311916 CAAGGTAAAATTCAATGACTGTTTTGA 57.688 29.630 9.18 3.80 0.00 2.69
620 621 8.550376 CCAAGGTAAAATTCAATGACTGTTTTG 58.450 33.333 9.18 0.00 0.00 2.44
621 622 8.264347 ACCAAGGTAAAATTCAATGACTGTTTT 58.736 29.630 0.00 5.80 0.00 2.43
622 623 7.791029 ACCAAGGTAAAATTCAATGACTGTTT 58.209 30.769 0.00 0.00 0.00 2.83
623 624 7.360113 ACCAAGGTAAAATTCAATGACTGTT 57.640 32.000 0.00 0.00 0.00 3.16
624 625 6.976934 ACCAAGGTAAAATTCAATGACTGT 57.023 33.333 0.00 0.00 0.00 3.55
625 626 8.960591 AGATACCAAGGTAAAATTCAATGACTG 58.039 33.333 2.62 0.00 33.99 3.51
626 627 8.960591 CAGATACCAAGGTAAAATTCAATGACT 58.039 33.333 2.62 0.00 33.99 3.41
627 628 8.739972 ACAGATACCAAGGTAAAATTCAATGAC 58.260 33.333 2.62 0.00 33.99 3.06
628 629 8.877864 ACAGATACCAAGGTAAAATTCAATGA 57.122 30.769 2.62 0.00 33.99 2.57
640 641 8.548877 ACAAACTCATATTACAGATACCAAGGT 58.451 33.333 0.00 0.00 0.00 3.50
641 642 8.964476 ACAAACTCATATTACAGATACCAAGG 57.036 34.615 0.00 0.00 0.00 3.61
643 644 8.673711 GCAACAAACTCATATTACAGATACCAA 58.326 33.333 0.00 0.00 0.00 3.67
644 645 7.282224 GGCAACAAACTCATATTACAGATACCA 59.718 37.037 0.00 0.00 0.00 3.25
645 646 7.499232 AGGCAACAAACTCATATTACAGATACC 59.501 37.037 0.00 0.00 41.41 2.73
646 647 8.438676 AGGCAACAAACTCATATTACAGATAC 57.561 34.615 0.00 0.00 41.41 2.24
647 648 8.892723 CAAGGCAACAAACTCATATTACAGATA 58.107 33.333 0.00 0.00 41.41 1.98
648 649 7.394359 ACAAGGCAACAAACTCATATTACAGAT 59.606 33.333 0.00 0.00 41.41 2.90
649 650 6.714810 ACAAGGCAACAAACTCATATTACAGA 59.285 34.615 0.00 0.00 41.41 3.41
650 651 6.913170 ACAAGGCAACAAACTCATATTACAG 58.087 36.000 0.00 0.00 41.41 2.74
651 652 6.892658 ACAAGGCAACAAACTCATATTACA 57.107 33.333 0.00 0.00 41.41 2.41
654 655 8.686334 CCTTATACAAGGCAACAAACTCATATT 58.314 33.333 0.00 0.00 44.90 1.28
655 656 8.225603 CCTTATACAAGGCAACAAACTCATAT 57.774 34.615 0.00 0.00 44.90 1.78
656 657 7.624360 CCTTATACAAGGCAACAAACTCATA 57.376 36.000 0.00 0.00 44.90 2.15
657 658 6.515272 CCTTATACAAGGCAACAAACTCAT 57.485 37.500 0.00 0.00 44.90 2.90
658 659 5.957842 CCTTATACAAGGCAACAAACTCA 57.042 39.130 0.00 0.00 44.90 3.41
670 671 6.749036 ACTCCCTACATTCCCTTATACAAG 57.251 41.667 0.00 0.00 0.00 3.16
671 672 8.626917 TTTACTCCCTACATTCCCTTATACAA 57.373 34.615 0.00 0.00 0.00 2.41
672 673 8.808240 ATTTACTCCCTACATTCCCTTATACA 57.192 34.615 0.00 0.00 0.00 2.29
673 674 8.877195 TGATTTACTCCCTACATTCCCTTATAC 58.123 37.037 0.00 0.00 0.00 1.47
674 675 9.455144 TTGATTTACTCCCTACATTCCCTTATA 57.545 33.333 0.00 0.00 0.00 0.98
675 676 7.947782 TGATTTACTCCCTACATTCCCTTAT 57.052 36.000 0.00 0.00 0.00 1.73
676 677 7.758820 TTGATTTACTCCCTACATTCCCTTA 57.241 36.000 0.00 0.00 0.00 2.69
677 678 6.652205 TTGATTTACTCCCTACATTCCCTT 57.348 37.500 0.00 0.00 0.00 3.95
678 679 6.652205 TTTGATTTACTCCCTACATTCCCT 57.348 37.500 0.00 0.00 0.00 4.20
679 680 7.898014 ATTTTGATTTACTCCCTACATTCCC 57.102 36.000 0.00 0.00 0.00 3.97
680 681 8.197439 CCAATTTTGATTTACTCCCTACATTCC 58.803 37.037 0.00 0.00 0.00 3.01
681 682 8.749354 ACCAATTTTGATTTACTCCCTACATTC 58.251 33.333 0.00 0.00 0.00 2.67
682 683 8.531146 CACCAATTTTGATTTACTCCCTACATT 58.469 33.333 0.00 0.00 0.00 2.71
683 684 7.124147 CCACCAATTTTGATTTACTCCCTACAT 59.876 37.037 0.00 0.00 0.00 2.29
684 685 6.435904 CCACCAATTTTGATTTACTCCCTACA 59.564 38.462 0.00 0.00 0.00 2.74
685 686 6.127451 CCCACCAATTTTGATTTACTCCCTAC 60.127 42.308 0.00 0.00 0.00 3.18
686 687 5.955355 CCCACCAATTTTGATTTACTCCCTA 59.045 40.000 0.00 0.00 0.00 3.53
687 688 4.777366 CCCACCAATTTTGATTTACTCCCT 59.223 41.667 0.00 0.00 0.00 4.20
688 689 4.775253 TCCCACCAATTTTGATTTACTCCC 59.225 41.667 0.00 0.00 0.00 4.30
689 690 5.624509 GCTCCCACCAATTTTGATTTACTCC 60.625 44.000 0.00 0.00 0.00 3.85
690 691 5.410924 GCTCCCACCAATTTTGATTTACTC 58.589 41.667 0.00 0.00 0.00 2.59
691 692 4.222810 GGCTCCCACCAATTTTGATTTACT 59.777 41.667 0.00 0.00 0.00 2.24
692 693 4.222810 AGGCTCCCACCAATTTTGATTTAC 59.777 41.667 0.00 0.00 0.00 2.01
705 706 3.017442 GTTTTCATCTAAGGCTCCCACC 58.983 50.000 0.00 0.00 0.00 4.61
756 757 6.619801 AATTGTTGGATCGTTAGATTAGCC 57.380 37.500 0.00 0.00 37.19 3.93
797 798 6.390721 ACGAAATCTATTATCACTCCGATGG 58.609 40.000 0.00 0.00 35.39 3.51
798 799 7.875316 AACGAAATCTATTATCACTCCGATG 57.125 36.000 0.00 0.00 35.39 3.84
810 814 3.947834 CCTCTGGGCAAACGAAATCTATT 59.052 43.478 0.00 0.00 0.00 1.73
829 833 0.671781 ATTGCGTGTGACTGCTCCTC 60.672 55.000 2.45 0.00 0.00 3.71
830 834 0.952497 CATTGCGTGTGACTGCTCCT 60.952 55.000 2.45 0.00 0.00 3.69
831 835 1.499056 CATTGCGTGTGACTGCTCC 59.501 57.895 2.45 0.00 0.00 4.70
832 836 1.154338 GCATTGCGTGTGACTGCTC 60.154 57.895 0.00 0.00 0.00 4.26
1215 6343 9.301153 AGTGTTGCAGTTTTGAACTAAAATTAG 57.699 29.630 0.00 0.00 40.46 1.73
1255 6450 5.048782 TCGCAAAAATAATGCTCTGTTCTGT 60.049 36.000 0.00 0.00 41.64 3.41
1256 6451 5.393124 TCGCAAAAATAATGCTCTGTTCTG 58.607 37.500 0.00 0.00 41.64 3.02
1257 6452 5.392380 CCTCGCAAAAATAATGCTCTGTTCT 60.392 40.000 0.00 0.00 41.64 3.01
1266 6519 4.569162 TCGTCCTACCTCGCAAAAATAATG 59.431 41.667 0.00 0.00 0.00 1.90
1318 6571 5.204833 CCCGATAAATTAATCAACTGTGCG 58.795 41.667 0.00 0.00 0.00 5.34
1452 6705 9.599866 TGAGTTAAATATTCCTACACATGTGAG 57.400 33.333 31.94 21.87 0.00 3.51
1484 6737 7.650649 GATAAAATCGATTTCCGTTCACAAG 57.349 36.000 22.93 0.00 39.75 3.16
1527 6885 4.340950 AGGGTACGGGCATTAAAAATGATG 59.659 41.667 3.86 0.00 0.00 3.07
1574 6941 3.023119 TCCACAAGCAAGAAAGCTCAAA 58.977 40.909 0.00 0.00 45.89 2.69
1607 6985 7.553504 AAGGCAAAAATTACTCCTTATGGTT 57.446 32.000 0.00 0.00 35.55 3.67
2092 21770 7.053498 TGTGAACTAACATGGCATGTATATGT 58.947 34.615 31.58 22.61 44.07 2.29
2217 24878 7.067728 CAGTGTTGTAATTCTCATATGCATCG 58.932 38.462 0.19 0.00 0.00 3.84
2235 24896 5.175127 TGTGTGTATGTATAGCCAGTGTTG 58.825 41.667 0.00 0.00 0.00 3.33
2237 24898 5.614324 ATGTGTGTATGTATAGCCAGTGT 57.386 39.130 0.00 0.00 0.00 3.55
2277 24938 7.838884 TCAATTGATGGCAAGACAATAATTCA 58.161 30.769 3.38 0.00 37.45 2.57
2279 24940 8.657074 CATCAATTGATGGCAAGACAATAATT 57.343 30.769 32.24 0.88 46.09 1.40
2326 24987 1.810151 GCAAGACATAGGCGTTTCCAA 59.190 47.619 0.00 0.00 37.29 3.53
2333 25000 3.492421 AAACAATGCAAGACATAGGCG 57.508 42.857 0.00 0.00 38.34 5.52
2392 25059 8.365399 TCCATAACAATTTTCGCACTAGATAG 57.635 34.615 0.00 0.00 0.00 2.08
2494 25190 4.389077 GGTTCTCGTCAATTTCCTACTGTG 59.611 45.833 0.00 0.00 0.00 3.66
2529 25225 8.432805 TCCTAGTTTTTAATTTGGATTTTGGCA 58.567 29.630 0.00 0.00 0.00 4.92
2566 25268 4.241681 TGTCTTGTTTTGACACCTTTTGC 58.758 39.130 0.00 0.00 39.23 3.68
2698 25400 7.383102 ACTGGAATTTCTGTAATACTGCAAG 57.617 36.000 0.00 0.00 42.29 4.01
2769 25474 1.003118 TCTTGGGACTCGTCAATTGGG 59.997 52.381 5.42 0.00 0.00 4.12
2824 25532 9.467258 CAAACACAAAACATCACAGATAATTCT 57.533 29.630 0.00 0.00 0.00 2.40
2966 25675 7.648039 ATTTTGGTAGGTACTGAAACAACAA 57.352 32.000 0.00 0.00 41.52 2.83
2998 26391 7.572910 GCCAAATGCAAACCGAAATTAAAGAAT 60.573 33.333 0.00 0.00 40.77 2.40
3002 26395 4.214332 GGCCAAATGCAAACCGAAATTAAA 59.786 37.500 0.00 0.00 43.89 1.52
3003 26396 3.748568 GGCCAAATGCAAACCGAAATTAA 59.251 39.130 0.00 0.00 43.89 1.40
3090 26486 5.583061 AGTCATTTCAGTTGTACACGTGAAA 59.417 36.000 25.01 24.06 41.74 2.69
3095 26491 5.651172 TTCAGTCATTTCAGTTGTACACG 57.349 39.130 0.00 0.00 0.00 4.49
3144 26540 7.921786 AATTTCAGGAATTCAATAGACACGA 57.078 32.000 7.93 0.00 32.49 4.35
3324 26721 2.811101 CCAAACTTTGGCGTGCCA 59.189 55.556 10.06 10.06 45.17 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.