Multiple sequence alignment - TraesCS2D01G065200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G065200 chr2D 100.000 3313 0 0 1 3313 27861982 27858670 0.000000e+00 6119.0
1 TraesCS2D01G065200 chr2D 88.341 1724 119 35 1635 3313 27853945 27852259 0.000000e+00 1995.0
2 TraesCS2D01G065200 chr2D 89.822 1012 61 21 1497 2469 27883896 27882888 0.000000e+00 1260.0
3 TraesCS2D01G065200 chr2D 85.371 916 114 12 1648 2554 27849528 27848624 0.000000e+00 931.0
4 TraesCS2D01G065200 chr2D 85.599 868 102 13 1645 2509 27850872 27850025 0.000000e+00 889.0
5 TraesCS2D01G065200 chr2D 81.151 504 59 16 780 1269 27884427 27883946 4.040000e-99 372.0
6 TraesCS2D01G065200 chr2B 94.608 2485 88 26 138 2611 44287812 44285363 0.000000e+00 3805.0
7 TraesCS2D01G065200 chr2B 90.113 708 48 10 1497 2183 44311362 44310656 0.000000e+00 900.0
8 TraesCS2D01G065200 chr2B 84.199 905 116 21 1662 2554 44180903 44180014 0.000000e+00 854.0
9 TraesCS2D01G065200 chr2B 85.714 812 77 15 2389 3187 44190250 44189465 0.000000e+00 821.0
10 TraesCS2D01G065200 chr2B 85.290 673 79 11 1856 2526 44188900 44188246 0.000000e+00 676.0
11 TraesCS2D01G065200 chr2B 94.940 336 17 0 2978 3313 44279269 44278934 8.140000e-146 527.0
12 TraesCS2D01G065200 chr2B 96.053 304 11 1 2599 2902 44285307 44285005 8.260000e-136 494.0
13 TraesCS2D01G065200 chr2B 82.314 458 58 14 789 1233 44192221 44191774 3.120000e-100 375.0
14 TraesCS2D01G065200 chr2B 82.314 458 58 14 789 1233 44274901 44274454 3.120000e-100 375.0
15 TraesCS2D01G065200 chr2B 82.511 446 49 17 836 1269 44311840 44311412 6.760000e-97 364.0
16 TraesCS2D01G065200 chr2B 91.150 113 7 2 28 140 44289245 44289136 2.060000e-32 150.0
17 TraesCS2D01G065200 chr2A 95.959 2153 79 6 523 2670 30049608 30047459 0.000000e+00 3487.0
18 TraesCS2D01G065200 chr2A 87.536 1717 140 28 1635 3313 30021219 30019539 0.000000e+00 1917.0
19 TraesCS2D01G065200 chr2A 87.793 1024 72 20 1497 2469 30072444 30071423 0.000000e+00 1149.0
20 TraesCS2D01G065200 chr2A 82.942 938 116 19 1577 2508 30018194 30017295 0.000000e+00 806.0
21 TraesCS2D01G065200 chr2A 87.384 539 46 5 1 528 30050984 30050457 1.700000e-167 599.0
22 TraesCS2D01G065200 chr2A 92.898 352 22 2 2965 3313 30026252 30025901 2.950000e-140 508.0
23 TraesCS2D01G065200 chr2A 96.525 259 5 3 2667 2921 30047357 30047099 3.060000e-115 425.0
24 TraesCS2D01G065200 chr2A 82.540 504 57 17 780 1269 30072980 30072494 6.610000e-112 414.0
25 TraesCS2D01G065200 chr2A 82.237 456 60 13 789 1233 30021714 30021269 1.120000e-99 374.0
26 TraesCS2D01G065200 chr2A 91.558 154 13 0 1039 1192 30127268 30127115 2.590000e-51 213.0
27 TraesCS2D01G065200 chr2A 95.588 68 2 1 2460 2526 30071037 30070970 1.260000e-19 108.0
28 TraesCS2D01G065200 chr2A 98.113 53 1 0 2920 2972 30041575 30041523 3.520000e-15 93.5
29 TraesCS2D01G065200 chr3B 74.390 164 24 16 2824 2976 627810083 627810239 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G065200 chr2D 27858670 27861982 3312 True 6119.000000 6119 100.000000 1 3313 1 chr2D.!!$R1 3312
1 TraesCS2D01G065200 chr2D 27848624 27853945 5321 True 1271.666667 1995 86.437000 1635 3313 3 chr2D.!!$R2 1678
2 TraesCS2D01G065200 chr2D 27882888 27884427 1539 True 816.000000 1260 85.486500 780 2469 2 chr2D.!!$R3 1689
3 TraesCS2D01G065200 chr2B 44285005 44289245 4240 True 1483.000000 3805 93.937000 28 2902 3 chr2B.!!$R5 2874
4 TraesCS2D01G065200 chr2B 44180014 44180903 889 True 854.000000 854 84.199000 1662 2554 1 chr2B.!!$R1 892
5 TraesCS2D01G065200 chr2B 44310656 44311840 1184 True 632.000000 900 86.312000 836 2183 2 chr2B.!!$R6 1347
6 TraesCS2D01G065200 chr2B 44188246 44192221 3975 True 624.000000 821 84.439333 789 3187 3 chr2B.!!$R4 2398
7 TraesCS2D01G065200 chr2A 30047099 30050984 3885 True 1503.666667 3487 93.289333 1 2921 3 chr2A.!!$R5 2920
8 TraesCS2D01G065200 chr2A 30017295 30021714 4419 True 1032.333333 1917 84.238333 789 3313 3 chr2A.!!$R4 2524
9 TraesCS2D01G065200 chr2A 30070970 30072980 2010 True 557.000000 1149 88.640333 780 2526 3 chr2A.!!$R6 1746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
690 2888 0.39113 TCGTTATGCCTGTGCCACTC 60.391 55.000 0.0 0.0 36.33 3.51 F
1026 3228 1.75078 GCTTAGCCTGCCACCTTCC 60.751 63.158 0.0 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2230 4507 0.385473 GACAATGGTCCGCGTGTTTG 60.385 55.0 4.92 4.24 38.12 2.93 R
3008 11090 0.035439 GATTGGAGCCCCAGACGAAA 60.035 55.0 0.00 0.00 44.60 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 47 6.688637 TCATCTTACATGCAGGAAATTCAG 57.311 37.500 4.84 0.00 0.00 3.02
47 50 7.558807 TCATCTTACATGCAGGAAATTCAGAAT 59.441 33.333 4.84 0.00 0.00 2.40
48 51 7.707624 TCTTACATGCAGGAAATTCAGAATT 57.292 32.000 4.84 2.20 0.00 2.17
49 52 8.125978 TCTTACATGCAGGAAATTCAGAATTT 57.874 30.769 19.26 19.26 43.43 1.82
50 53 8.587608 TCTTACATGCAGGAAATTCAGAATTTT 58.412 29.630 19.98 5.00 40.97 1.82
51 54 9.211485 CTTACATGCAGGAAATTCAGAATTTTT 57.789 29.630 19.98 10.55 40.97 1.94
220 1550 2.798976 TTTGCAGGTTGCTTCATCAC 57.201 45.000 2.48 0.00 45.31 3.06
274 1605 2.499693 TGTGGGCTAGATTCAACGATGA 59.500 45.455 0.00 0.00 0.00 2.92
324 1665 4.947388 TGTAATTTATGAGTTCACTGGGGC 59.053 41.667 0.00 0.00 0.00 5.80
327 1668 0.616395 TATGAGTTCACTGGGGCCGA 60.616 55.000 0.00 0.00 0.00 5.54
330 1671 2.668550 GTTCACTGGGGCCGACAC 60.669 66.667 0.00 0.00 0.00 3.67
347 1688 3.364023 CGACACGAACTGAGTAAATGGAC 59.636 47.826 0.00 0.00 0.00 4.02
369 1710 6.490381 GGACAACAGAGGGATCTAAAACTTTT 59.510 38.462 0.00 0.00 0.00 2.27
374 1715 4.938226 AGAGGGATCTAAAACTTTTGCTCG 59.062 41.667 0.00 0.00 0.00 5.03
376 1717 4.455877 AGGGATCTAAAACTTTTGCTCGTG 59.544 41.667 0.00 0.00 0.00 4.35
382 1723 7.129109 TCTAAAACTTTTGCTCGTGGATTAG 57.871 36.000 0.00 0.00 0.00 1.73
392 1733 4.451096 TGCTCGTGGATTAGAACAAAGTTC 59.549 41.667 1.77 1.77 0.00 3.01
446 1787 7.922811 GCATTTCCAATACTAAAAATCCTCCAG 59.077 37.037 0.00 0.00 0.00 3.86
465 1806 3.256631 CCAGGGCATGTAAATGATTAGGC 59.743 47.826 0.00 0.00 0.00 3.93
474 1815 7.376072 GCATGTAAATGATTAGGCGTAGAAAAC 59.624 37.037 0.00 0.00 0.00 2.43
559 2754 2.666022 CACATCACACATGCAGCAAATG 59.334 45.455 0.00 3.12 0.00 2.32
603 2800 6.959671 TTTTATAAAATGAAGCGCCAAAGG 57.040 33.333 2.29 0.00 0.00 3.11
623 2820 6.588719 AAGGTTACAAGCAAGCATAATTGA 57.411 33.333 0.00 0.00 31.55 2.57
690 2888 0.391130 TCGTTATGCCTGTGCCACTC 60.391 55.000 0.00 0.00 36.33 3.51
709 2907 5.796935 CCACTCAACTTAAATCGCAAATCAG 59.203 40.000 0.00 0.00 0.00 2.90
725 2923 5.225642 CAAATCAGCAAAGGAAGTTCTTCC 58.774 41.667 20.23 20.23 41.42 3.46
754 2952 5.502153 TTTCAAGCGTTACCTTTAGCAAA 57.498 34.783 0.00 0.00 0.00 3.68
757 2955 6.804770 TCAAGCGTTACCTTTAGCAAAATA 57.195 33.333 0.00 0.00 0.00 1.40
1026 3228 1.750780 GCTTAGCCTGCCACCTTCC 60.751 63.158 0.00 0.00 0.00 3.46
1108 3320 2.432628 GGTCTCAAGTCCACCGCG 60.433 66.667 0.00 0.00 0.00 6.46
1262 3480 2.564062 CACTTGCAGAACATCCCCAATT 59.436 45.455 0.00 0.00 0.00 2.32
1356 3574 2.527497 TGGCTTTGGATGCTCATTCAA 58.473 42.857 0.00 0.00 34.63 2.69
1365 3583 1.909700 TGCTCATTCAACCTTGTCCC 58.090 50.000 0.00 0.00 0.00 4.46
1541 3759 3.873361 CGAACAATGCATATGAGACCTGT 59.127 43.478 6.97 0.00 0.00 4.00
1583 3802 7.984422 TTGCTCATCAACAGATTTTTCTAGA 57.016 32.000 0.00 0.00 0.00 2.43
2077 4313 8.918202 ATGTATGAAGGTCTTTTGTGAACTTA 57.082 30.769 0.00 0.00 43.26 2.24
2090 4326 5.570234 TGTGAACTTAACTTTTGTCCACC 57.430 39.130 0.00 0.00 0.00 4.61
2455 5498 6.327934 TCTACATCGGTTTTTGCTAGTAGAC 58.672 40.000 0.00 0.00 33.76 2.59
2512 10417 4.983671 AAGAACTTTTGTTGGTCTGGAC 57.016 40.909 0.00 0.00 43.66 4.02
2882 10964 1.064017 ACAACACCAAGCAGGAAAGGA 60.064 47.619 1.83 0.00 41.22 3.36
2896 10978 1.284841 AAAGGATGGCCTCTCCCCTG 61.285 60.000 18.18 0.00 46.28 4.45
2921 11003 8.970020 TGTGAAGATCTTGCCATTTGTAATAAT 58.030 29.630 14.00 0.00 0.00 1.28
2953 11035 3.924114 TTCCAAGAGAACACCACTTCA 57.076 42.857 0.00 0.00 0.00 3.02
2954 11036 3.924114 TCCAAGAGAACACCACTTCAA 57.076 42.857 0.00 0.00 0.00 2.69
2955 11037 4.229304 TCCAAGAGAACACCACTTCAAA 57.771 40.909 0.00 0.00 0.00 2.69
2956 11038 4.199310 TCCAAGAGAACACCACTTCAAAG 58.801 43.478 0.00 0.00 0.00 2.77
2957 11039 4.080582 TCCAAGAGAACACCACTTCAAAGA 60.081 41.667 0.00 0.00 0.00 2.52
2958 11040 4.640201 CCAAGAGAACACCACTTCAAAGAA 59.360 41.667 0.00 0.00 0.00 2.52
2959 11041 5.220931 CCAAGAGAACACCACTTCAAAGAAG 60.221 44.000 5.28 5.28 0.00 2.85
2960 11042 5.359194 AGAGAACACCACTTCAAAGAAGA 57.641 39.130 13.23 0.00 0.00 2.87
2961 11043 5.745227 AGAGAACACCACTTCAAAGAAGAA 58.255 37.500 13.23 0.00 0.00 2.52
2962 11044 6.180472 AGAGAACACCACTTCAAAGAAGAAA 58.820 36.000 13.23 0.00 0.00 2.52
2963 11045 6.317391 AGAGAACACCACTTCAAAGAAGAAAG 59.683 38.462 13.23 4.38 0.00 2.62
2964 11046 5.358160 AGAACACCACTTCAAAGAAGAAAGG 59.642 40.000 13.23 12.77 0.00 3.11
2965 11047 3.954258 ACACCACTTCAAAGAAGAAAGGG 59.046 43.478 13.23 10.49 30.92 3.95
2966 11048 3.954258 CACCACTTCAAAGAAGAAAGGGT 59.046 43.478 13.23 11.01 35.56 4.34
2967 11049 3.954258 ACCACTTCAAAGAAGAAAGGGTG 59.046 43.478 13.23 1.54 34.56 4.61
2968 11050 3.954258 CCACTTCAAAGAAGAAAGGGTGT 59.046 43.478 13.23 0.00 0.00 4.16
2969 11051 4.036852 CCACTTCAAAGAAGAAAGGGTGTC 59.963 45.833 13.23 0.00 0.00 3.67
2970 11052 4.036852 CACTTCAAAGAAGAAAGGGTGTCC 59.963 45.833 13.23 0.00 0.00 4.02
2971 11053 3.943671 TCAAAGAAGAAAGGGTGTCCA 57.056 42.857 0.00 0.00 34.83 4.02
2972 11054 4.243793 TCAAAGAAGAAAGGGTGTCCAA 57.756 40.909 0.00 0.00 34.83 3.53
2973 11055 4.605183 TCAAAGAAGAAAGGGTGTCCAAA 58.395 39.130 0.00 0.00 34.83 3.28
2974 11056 5.208121 TCAAAGAAGAAAGGGTGTCCAAAT 58.792 37.500 0.00 0.00 34.83 2.32
2975 11057 5.301805 TCAAAGAAGAAAGGGTGTCCAAATC 59.698 40.000 0.00 0.00 34.83 2.17
2976 11058 3.412386 AGAAGAAAGGGTGTCCAAATCG 58.588 45.455 0.00 0.00 34.83 3.34
2977 11059 2.951229 AGAAAGGGTGTCCAAATCGT 57.049 45.000 0.00 0.00 34.83 3.73
2978 11060 2.779506 AGAAAGGGTGTCCAAATCGTC 58.220 47.619 0.00 0.00 34.83 4.20
2979 11061 2.372172 AGAAAGGGTGTCCAAATCGTCT 59.628 45.455 0.00 0.00 34.83 4.18
2980 11062 3.581332 AGAAAGGGTGTCCAAATCGTCTA 59.419 43.478 0.00 0.00 34.83 2.59
2981 11063 3.329929 AAGGGTGTCCAAATCGTCTAC 57.670 47.619 0.00 0.00 34.83 2.59
2982 11064 2.253610 AGGGTGTCCAAATCGTCTACA 58.746 47.619 0.00 0.00 34.83 2.74
2983 11065 2.838202 AGGGTGTCCAAATCGTCTACAT 59.162 45.455 0.00 0.00 34.83 2.29
2984 11066 2.936498 GGGTGTCCAAATCGTCTACATG 59.064 50.000 0.00 0.00 0.00 3.21
2985 11067 2.351726 GGTGTCCAAATCGTCTACATGC 59.648 50.000 0.00 0.00 0.00 4.06
2986 11068 3.000041 GTGTCCAAATCGTCTACATGCA 59.000 45.455 0.00 0.00 0.00 3.96
2987 11069 3.062639 GTGTCCAAATCGTCTACATGCAG 59.937 47.826 0.00 0.00 0.00 4.41
2988 11070 2.030946 GTCCAAATCGTCTACATGCAGC 59.969 50.000 0.00 0.00 0.00 5.25
2989 11071 2.009051 CCAAATCGTCTACATGCAGCA 58.991 47.619 0.00 0.00 0.00 4.41
2990 11072 2.615447 CCAAATCGTCTACATGCAGCAT 59.385 45.455 0.52 0.52 0.00 3.79
2991 11073 3.303593 CCAAATCGTCTACATGCAGCATC 60.304 47.826 4.38 0.00 0.00 3.91
2992 11074 2.896745 ATCGTCTACATGCAGCATCA 57.103 45.000 4.38 0.00 0.00 3.07
2993 11075 2.671130 TCGTCTACATGCAGCATCAA 57.329 45.000 4.38 0.00 0.00 2.57
2994 11076 3.183793 TCGTCTACATGCAGCATCAAT 57.816 42.857 4.38 0.00 0.00 2.57
2995 11077 4.320608 TCGTCTACATGCAGCATCAATA 57.679 40.909 4.38 0.00 0.00 1.90
2996 11078 4.051237 TCGTCTACATGCAGCATCAATAC 58.949 43.478 4.38 1.31 0.00 1.89
2997 11079 3.803778 CGTCTACATGCAGCATCAATACA 59.196 43.478 4.38 0.00 0.00 2.29
2998 11080 4.450080 CGTCTACATGCAGCATCAATACAT 59.550 41.667 4.38 0.00 0.00 2.29
2999 11081 5.049886 CGTCTACATGCAGCATCAATACATT 60.050 40.000 4.38 0.00 0.00 2.71
3000 11082 6.140786 GTCTACATGCAGCATCAATACATTG 58.859 40.000 4.38 0.00 39.10 2.82
3001 11083 4.994907 ACATGCAGCATCAATACATTGT 57.005 36.364 4.38 0.00 38.84 2.71
3002 11084 4.928601 ACATGCAGCATCAATACATTGTC 58.071 39.130 4.38 0.00 38.84 3.18
3003 11085 4.643334 ACATGCAGCATCAATACATTGTCT 59.357 37.500 4.38 0.00 38.84 3.41
3004 11086 5.824097 ACATGCAGCATCAATACATTGTCTA 59.176 36.000 4.38 0.00 38.84 2.59
3005 11087 5.996669 TGCAGCATCAATACATTGTCTAG 57.003 39.130 0.00 0.00 38.84 2.43
3006 11088 5.430886 TGCAGCATCAATACATTGTCTAGT 58.569 37.500 0.00 0.00 38.84 2.57
3007 11089 5.295045 TGCAGCATCAATACATTGTCTAGTG 59.705 40.000 0.00 0.00 38.84 2.74
3008 11090 5.295292 GCAGCATCAATACATTGTCTAGTGT 59.705 40.000 0.00 0.00 38.84 3.55
3009 11091 6.183360 GCAGCATCAATACATTGTCTAGTGTT 60.183 38.462 0.00 0.00 38.84 3.32
3010 11092 7.627088 GCAGCATCAATACATTGTCTAGTGTTT 60.627 37.037 0.00 0.00 38.84 2.83
3011 11093 7.907045 CAGCATCAATACATTGTCTAGTGTTTC 59.093 37.037 0.00 0.00 38.84 2.78
3012 11094 6.901887 GCATCAATACATTGTCTAGTGTTTCG 59.098 38.462 0.00 0.00 38.84 3.46
3013 11095 7.413000 GCATCAATACATTGTCTAGTGTTTCGT 60.413 37.037 0.00 0.00 38.84 3.85
3014 11096 7.576750 TCAATACATTGTCTAGTGTTTCGTC 57.423 36.000 0.00 0.00 38.84 4.20
3015 11097 7.375834 TCAATACATTGTCTAGTGTTTCGTCT 58.624 34.615 0.00 0.00 38.84 4.18
3016 11098 7.328493 TCAATACATTGTCTAGTGTTTCGTCTG 59.672 37.037 0.00 0.00 38.84 3.51
3017 11099 4.307432 ACATTGTCTAGTGTTTCGTCTGG 58.693 43.478 0.00 0.00 0.00 3.86
3018 11100 3.380479 TTGTCTAGTGTTTCGTCTGGG 57.620 47.619 0.00 0.00 0.00 4.45
3019 11101 1.616865 TGTCTAGTGTTTCGTCTGGGG 59.383 52.381 0.00 0.00 0.00 4.96
3020 11102 0.606604 TCTAGTGTTTCGTCTGGGGC 59.393 55.000 0.00 0.00 0.00 5.80
3021 11103 0.608640 CTAGTGTTTCGTCTGGGGCT 59.391 55.000 0.00 0.00 0.00 5.19
3022 11104 0.606604 TAGTGTTTCGTCTGGGGCTC 59.393 55.000 0.00 0.00 0.00 4.70
3023 11105 1.671379 GTGTTTCGTCTGGGGCTCC 60.671 63.158 0.00 0.00 0.00 4.70
3024 11106 2.144078 TGTTTCGTCTGGGGCTCCA 61.144 57.895 4.49 4.49 41.58 3.86
3025 11107 1.072505 GTTTCGTCTGGGGCTCCAA 59.927 57.895 6.84 0.00 43.51 3.53
3026 11108 0.322546 GTTTCGTCTGGGGCTCCAAT 60.323 55.000 6.84 0.00 43.51 3.16
3027 11109 0.035439 TTTCGTCTGGGGCTCCAATC 60.035 55.000 6.84 1.04 43.51 2.67
3028 11110 1.198094 TTCGTCTGGGGCTCCAATCA 61.198 55.000 6.84 0.00 43.51 2.57
3029 11111 1.198094 TCGTCTGGGGCTCCAATCAA 61.198 55.000 6.84 0.00 43.51 2.57
3030 11112 0.107017 CGTCTGGGGCTCCAATCAAT 60.107 55.000 6.84 0.00 43.51 2.57
3031 11113 1.685148 GTCTGGGGCTCCAATCAATC 58.315 55.000 6.84 0.00 43.51 2.67
3032 11114 1.213926 GTCTGGGGCTCCAATCAATCT 59.786 52.381 6.84 0.00 43.51 2.40
3033 11115 1.213678 TCTGGGGCTCCAATCAATCTG 59.786 52.381 6.84 0.00 43.51 2.90
3034 11116 1.002069 TGGGGCTCCAATCAATCTGT 58.998 50.000 0.25 0.00 40.73 3.41
3035 11117 2.173356 CTGGGGCTCCAATCAATCTGTA 59.827 50.000 6.84 0.00 43.51 2.74
3036 11118 2.580322 TGGGGCTCCAATCAATCTGTAA 59.420 45.455 0.25 0.00 40.73 2.41
3037 11119 3.011144 TGGGGCTCCAATCAATCTGTAAA 59.989 43.478 0.25 0.00 40.73 2.01
3038 11120 4.218312 GGGGCTCCAATCAATCTGTAAAT 58.782 43.478 0.00 0.00 0.00 1.40
3039 11121 5.103728 TGGGGCTCCAATCAATCTGTAAATA 60.104 40.000 0.25 0.00 40.73 1.40
3040 11122 5.833131 GGGGCTCCAATCAATCTGTAAATAA 59.167 40.000 0.00 0.00 0.00 1.40
3041 11123 6.015940 GGGGCTCCAATCAATCTGTAAATAAG 60.016 42.308 0.00 0.00 0.00 1.73
3042 11124 6.547510 GGGCTCCAATCAATCTGTAAATAAGT 59.452 38.462 0.00 0.00 0.00 2.24
3043 11125 7.255277 GGGCTCCAATCAATCTGTAAATAAGTC 60.255 40.741 0.00 0.00 0.00 3.01
3044 11126 7.255277 GGCTCCAATCAATCTGTAAATAAGTCC 60.255 40.741 0.00 0.00 0.00 3.85
3045 11127 7.283127 GCTCCAATCAATCTGTAAATAAGTCCA 59.717 37.037 0.00 0.00 0.00 4.02
3046 11128 9.177608 CTCCAATCAATCTGTAAATAAGTCCAA 57.822 33.333 0.00 0.00 0.00 3.53
3047 11129 9.527157 TCCAATCAATCTGTAAATAAGTCCAAA 57.473 29.630 0.00 0.00 0.00 3.28
3051 11133 9.927081 ATCAATCTGTAAATAAGTCCAAATCCT 57.073 29.630 0.00 0.00 0.00 3.24
3052 11134 9.753674 TCAATCTGTAAATAAGTCCAAATCCTT 57.246 29.630 0.00 0.00 0.00 3.36
3055 11137 9.753674 ATCTGTAAATAAGTCCAAATCCTTTGA 57.246 29.630 1.28 0.00 43.26 2.69
3056 11138 9.010029 TCTGTAAATAAGTCCAAATCCTTTGAC 57.990 33.333 1.28 0.00 43.26 3.18
3057 11139 8.934023 TGTAAATAAGTCCAAATCCTTTGACT 57.066 30.769 1.28 0.00 43.26 3.41
3083 11165 8.422577 AAAATTATAGGAGAAAAGCAAGTGGT 57.577 30.769 0.00 0.00 0.00 4.16
3084 11166 7.631717 AATTATAGGAGAAAAGCAAGTGGTC 57.368 36.000 0.00 0.00 0.00 4.02
3085 11167 4.917906 ATAGGAGAAAAGCAAGTGGTCT 57.082 40.909 0.00 0.00 0.00 3.85
3086 11168 3.133141 AGGAGAAAAGCAAGTGGTCTC 57.867 47.619 0.00 0.00 35.11 3.36
3087 11169 2.708325 AGGAGAAAAGCAAGTGGTCTCT 59.292 45.455 0.00 0.00 35.96 3.10
3088 11170 3.137360 AGGAGAAAAGCAAGTGGTCTCTT 59.863 43.478 0.00 0.00 35.96 2.85
3089 11171 3.885901 GGAGAAAAGCAAGTGGTCTCTTT 59.114 43.478 0.00 0.00 35.96 2.52
3090 11172 4.261363 GGAGAAAAGCAAGTGGTCTCTTTG 60.261 45.833 0.00 0.00 35.96 2.77
3091 11173 3.067320 AGAAAAGCAAGTGGTCTCTTTGC 59.933 43.478 0.46 0.46 0.00 3.68
3092 11174 2.355010 AAGCAAGTGGTCTCTTTGCT 57.645 45.000 5.21 5.21 35.27 3.91
3093 11175 1.889545 AGCAAGTGGTCTCTTTGCTC 58.110 50.000 5.21 0.00 31.55 4.26
3094 11176 1.141657 AGCAAGTGGTCTCTTTGCTCA 59.858 47.619 5.21 0.00 31.55 4.26
3095 11177 2.157738 GCAAGTGGTCTCTTTGCTCAT 58.842 47.619 1.51 0.00 0.00 2.90
3096 11178 2.095364 GCAAGTGGTCTCTTTGCTCATG 60.095 50.000 1.51 0.00 0.00 3.07
3097 11179 3.144506 CAAGTGGTCTCTTTGCTCATGT 58.855 45.455 0.00 0.00 0.00 3.21
3098 11180 2.775890 AGTGGTCTCTTTGCTCATGTG 58.224 47.619 0.00 0.00 0.00 3.21
3099 11181 2.369860 AGTGGTCTCTTTGCTCATGTGA 59.630 45.455 0.00 0.00 0.00 3.58
3100 11182 2.740981 GTGGTCTCTTTGCTCATGTGAG 59.259 50.000 5.66 5.66 44.75 3.51
3110 11192 1.830279 CTCATGTGAGCACAATGGGT 58.170 50.000 7.46 0.00 45.41 4.51
3111 11193 2.165167 CTCATGTGAGCACAATGGGTT 58.835 47.619 7.46 0.00 45.41 4.11
3112 11194 2.559668 CTCATGTGAGCACAATGGGTTT 59.440 45.455 7.46 0.00 45.41 3.27
3113 11195 2.557924 TCATGTGAGCACAATGGGTTTC 59.442 45.455 7.46 0.00 45.41 2.78
3114 11196 2.064434 TGTGAGCACAATGGGTTTCA 57.936 45.000 0.00 0.00 38.56 2.69
3115 11197 2.596346 TGTGAGCACAATGGGTTTCAT 58.404 42.857 0.00 0.00 38.56 2.57
3116 11198 2.557924 TGTGAGCACAATGGGTTTCATC 59.442 45.455 0.00 0.00 38.56 2.92
3117 11199 2.094545 GTGAGCACAATGGGTTTCATCC 60.095 50.000 0.00 0.00 34.44 3.51
3125 11207 2.604118 GGGTTTCATCCCGAGGAGA 58.396 57.895 0.00 0.00 37.93 3.71
3126 11208 0.909623 GGGTTTCATCCCGAGGAGAA 59.090 55.000 0.00 1.40 37.93 2.87
3127 11209 1.490910 GGGTTTCATCCCGAGGAGAAT 59.509 52.381 0.00 0.00 37.93 2.40
3128 11210 2.565841 GGTTTCATCCCGAGGAGAATG 58.434 52.381 0.00 0.00 34.05 2.67
3129 11211 2.092914 GGTTTCATCCCGAGGAGAATGT 60.093 50.000 0.00 0.00 34.05 2.71
3130 11212 3.198872 GTTTCATCCCGAGGAGAATGTC 58.801 50.000 0.00 0.00 34.05 3.06
3131 11213 2.159179 TCATCCCGAGGAGAATGTCA 57.841 50.000 0.00 0.00 34.05 3.58
3132 11214 2.034878 TCATCCCGAGGAGAATGTCAG 58.965 52.381 0.00 0.00 34.05 3.51
3133 11215 1.759445 CATCCCGAGGAGAATGTCAGT 59.241 52.381 0.00 0.00 34.05 3.41
3134 11216 1.186200 TCCCGAGGAGAATGTCAGTG 58.814 55.000 0.00 0.00 0.00 3.66
3135 11217 0.460987 CCCGAGGAGAATGTCAGTGC 60.461 60.000 0.00 0.00 0.00 4.40
3136 11218 0.460987 CCGAGGAGAATGTCAGTGCC 60.461 60.000 0.00 0.00 0.00 5.01
3137 11219 0.534412 CGAGGAGAATGTCAGTGCCT 59.466 55.000 0.00 0.00 0.00 4.75
3138 11220 1.066573 CGAGGAGAATGTCAGTGCCTT 60.067 52.381 0.00 0.00 0.00 4.35
3139 11221 2.626840 GAGGAGAATGTCAGTGCCTTC 58.373 52.381 0.00 0.00 0.00 3.46
3140 11222 2.235898 GAGGAGAATGTCAGTGCCTTCT 59.764 50.000 5.32 5.32 0.00 2.85
3141 11223 3.445008 AGGAGAATGTCAGTGCCTTCTA 58.555 45.455 5.54 0.00 0.00 2.10
3142 11224 3.840666 AGGAGAATGTCAGTGCCTTCTAA 59.159 43.478 5.54 0.00 0.00 2.10
3143 11225 4.081198 AGGAGAATGTCAGTGCCTTCTAAG 60.081 45.833 5.54 0.00 0.00 2.18
3156 11238 3.526931 CTTCTAAGGAGCATGTTCCGA 57.473 47.619 21.36 13.28 42.29 4.55
3157 11239 3.452474 CTTCTAAGGAGCATGTTCCGAG 58.548 50.000 21.36 20.87 42.29 4.63
3158 11240 1.137086 TCTAAGGAGCATGTTCCGAGC 59.863 52.381 21.36 0.00 42.29 5.03
3159 11241 0.179111 TAAGGAGCATGTTCCGAGCG 60.179 55.000 21.36 0.00 42.29 5.03
3160 11242 2.125512 GGAGCATGTTCCGAGCGT 60.126 61.111 13.27 0.00 0.00 5.07
3161 11243 1.741770 GGAGCATGTTCCGAGCGTT 60.742 57.895 13.27 0.00 0.00 4.84
3162 11244 1.696832 GGAGCATGTTCCGAGCGTTC 61.697 60.000 13.27 0.00 0.00 3.95
3163 11245 1.005037 AGCATGTTCCGAGCGTTCA 60.005 52.632 0.00 0.00 0.00 3.18
3164 11246 0.602638 AGCATGTTCCGAGCGTTCAA 60.603 50.000 0.00 0.00 0.00 2.69
3165 11247 0.452784 GCATGTTCCGAGCGTTCAAC 60.453 55.000 0.00 0.00 0.00 3.18
3166 11248 1.148310 CATGTTCCGAGCGTTCAACT 58.852 50.000 0.00 0.00 0.00 3.16
3167 11249 1.136252 CATGTTCCGAGCGTTCAACTG 60.136 52.381 0.00 0.00 0.00 3.16
3168 11250 0.103390 TGTTCCGAGCGTTCAACTGA 59.897 50.000 0.00 0.00 0.00 3.41
3169 11251 1.270094 TGTTCCGAGCGTTCAACTGAT 60.270 47.619 0.00 0.00 0.00 2.90
3170 11252 2.029739 TGTTCCGAGCGTTCAACTGATA 60.030 45.455 0.00 0.00 0.00 2.15
3171 11253 2.991190 GTTCCGAGCGTTCAACTGATAA 59.009 45.455 0.00 0.00 0.00 1.75
3172 11254 3.306917 TCCGAGCGTTCAACTGATAAA 57.693 42.857 0.00 0.00 0.00 1.40
3173 11255 3.655486 TCCGAGCGTTCAACTGATAAAA 58.345 40.909 0.00 0.00 0.00 1.52
3174 11256 4.250464 TCCGAGCGTTCAACTGATAAAAT 58.750 39.130 0.00 0.00 0.00 1.82
3175 11257 5.412640 TCCGAGCGTTCAACTGATAAAATA 58.587 37.500 0.00 0.00 0.00 1.40
3176 11258 5.870433 TCCGAGCGTTCAACTGATAAAATAA 59.130 36.000 0.00 0.00 0.00 1.40
3177 11259 6.537301 TCCGAGCGTTCAACTGATAAAATAAT 59.463 34.615 0.00 0.00 0.00 1.28
3178 11260 7.707464 TCCGAGCGTTCAACTGATAAAATAATA 59.293 33.333 0.00 0.00 0.00 0.98
3179 11261 8.004344 CCGAGCGTTCAACTGATAAAATAATAG 58.996 37.037 0.00 0.00 0.00 1.73
3180 11262 8.004344 CGAGCGTTCAACTGATAAAATAATAGG 58.996 37.037 0.00 0.00 0.00 2.57
3181 11263 8.958119 AGCGTTCAACTGATAAAATAATAGGA 57.042 30.769 0.00 0.00 0.00 2.94
3182 11264 9.561069 AGCGTTCAACTGATAAAATAATAGGAT 57.439 29.630 0.00 0.00 0.00 3.24
3183 11265 9.813080 GCGTTCAACTGATAAAATAATAGGATC 57.187 33.333 0.00 0.00 0.00 3.36
3205 11287 8.659925 GATCTAAGCAAAGATCTTGATCTTCA 57.340 34.615 21.59 4.27 45.64 3.02
3206 11288 9.275398 GATCTAAGCAAAGATCTTGATCTTCAT 57.725 33.333 21.59 8.52 45.64 2.57
3207 11289 8.434733 TCTAAGCAAAGATCTTGATCTTCATG 57.565 34.615 21.59 18.19 39.77 3.07
3208 11290 6.452494 AAGCAAAGATCTTGATCTTCATGG 57.548 37.500 21.59 14.21 39.77 3.66
3209 11291 5.507637 AGCAAAGATCTTGATCTTCATGGT 58.492 37.500 21.59 19.12 39.77 3.55
3210 11292 5.357314 AGCAAAGATCTTGATCTTCATGGTG 59.643 40.000 21.59 17.11 39.77 4.17
3211 11293 5.579718 CAAAGATCTTGATCTTCATGGTGC 58.420 41.667 21.59 0.00 39.77 5.01
3212 11294 4.774660 AGATCTTGATCTTCATGGTGCT 57.225 40.909 7.27 0.00 0.00 4.40
3213 11295 4.706035 AGATCTTGATCTTCATGGTGCTC 58.294 43.478 7.27 0.00 0.00 4.26
3214 11296 4.409574 AGATCTTGATCTTCATGGTGCTCT 59.590 41.667 7.27 0.00 0.00 4.09
3215 11297 3.870274 TCTTGATCTTCATGGTGCTCTG 58.130 45.455 0.00 0.00 0.00 3.35
3216 11298 3.262660 TCTTGATCTTCATGGTGCTCTGT 59.737 43.478 0.00 0.00 0.00 3.41
3217 11299 3.257469 TGATCTTCATGGTGCTCTGTC 57.743 47.619 0.00 0.00 0.00 3.51
3218 11300 2.568509 TGATCTTCATGGTGCTCTGTCA 59.431 45.455 0.00 0.00 0.00 3.58
3219 11301 3.199289 TGATCTTCATGGTGCTCTGTCAT 59.801 43.478 0.00 0.00 0.00 3.06
3220 11302 4.406649 TGATCTTCATGGTGCTCTGTCATA 59.593 41.667 0.00 0.00 0.00 2.15
3221 11303 5.071384 TGATCTTCATGGTGCTCTGTCATAT 59.929 40.000 0.00 0.00 0.00 1.78
3222 11304 4.953667 TCTTCATGGTGCTCTGTCATATC 58.046 43.478 0.00 0.00 0.00 1.63
3223 11305 3.758755 TCATGGTGCTCTGTCATATCC 57.241 47.619 0.00 0.00 0.00 2.59
3224 11306 3.040477 TCATGGTGCTCTGTCATATCCA 58.960 45.455 0.00 0.00 0.00 3.41
3225 11307 3.649502 TCATGGTGCTCTGTCATATCCAT 59.350 43.478 0.00 0.00 35.02 3.41
3226 11308 4.103627 TCATGGTGCTCTGTCATATCCATT 59.896 41.667 0.00 0.00 32.81 3.16
3227 11309 4.508551 TGGTGCTCTGTCATATCCATTT 57.491 40.909 0.00 0.00 0.00 2.32
3228 11310 4.201657 TGGTGCTCTGTCATATCCATTTG 58.798 43.478 0.00 0.00 0.00 2.32
3229 11311 3.004106 GGTGCTCTGTCATATCCATTTGC 59.996 47.826 0.00 0.00 0.00 3.68
3230 11312 3.628942 GTGCTCTGTCATATCCATTTGCA 59.371 43.478 0.00 0.00 0.00 4.08
3231 11313 4.096833 GTGCTCTGTCATATCCATTTGCAA 59.903 41.667 0.00 0.00 0.00 4.08
3232 11314 4.337274 TGCTCTGTCATATCCATTTGCAAG 59.663 41.667 0.00 0.00 0.00 4.01
3233 11315 4.261489 GCTCTGTCATATCCATTTGCAAGG 60.261 45.833 0.00 0.00 0.00 3.61
3234 11316 4.858850 TCTGTCATATCCATTTGCAAGGT 58.141 39.130 0.00 0.00 0.00 3.50
3235 11317 5.263599 TCTGTCATATCCATTTGCAAGGTT 58.736 37.500 0.00 0.00 0.00 3.50
3236 11318 5.357878 TCTGTCATATCCATTTGCAAGGTTC 59.642 40.000 0.00 0.00 0.00 3.62
3237 11319 5.015515 TGTCATATCCATTTGCAAGGTTCA 58.984 37.500 0.00 0.00 0.00 3.18
3238 11320 5.657745 TGTCATATCCATTTGCAAGGTTCAT 59.342 36.000 0.00 0.00 0.00 2.57
3239 11321 6.183360 TGTCATATCCATTTGCAAGGTTCATC 60.183 38.462 0.00 0.00 0.00 2.92
3240 11322 3.788333 ATCCATTTGCAAGGTTCATCG 57.212 42.857 0.00 0.00 0.00 3.84
3241 11323 1.818060 TCCATTTGCAAGGTTCATCGG 59.182 47.619 0.00 0.00 0.00 4.18
3242 11324 1.545582 CCATTTGCAAGGTTCATCGGT 59.454 47.619 0.00 0.00 0.00 4.69
3243 11325 2.598589 CATTTGCAAGGTTCATCGGTG 58.401 47.619 0.00 0.00 0.00 4.94
3244 11326 0.958091 TTTGCAAGGTTCATCGGTGG 59.042 50.000 0.00 0.00 0.00 4.61
3245 11327 0.893270 TTGCAAGGTTCATCGGTGGG 60.893 55.000 0.00 0.00 0.00 4.61
3246 11328 2.700773 GCAAGGTTCATCGGTGGGC 61.701 63.158 0.00 0.00 0.00 5.36
3247 11329 1.303236 CAAGGTTCATCGGTGGGCA 60.303 57.895 0.00 0.00 0.00 5.36
3248 11330 0.680921 CAAGGTTCATCGGTGGGCAT 60.681 55.000 0.00 0.00 0.00 4.40
3249 11331 0.916086 AAGGTTCATCGGTGGGCATA 59.084 50.000 0.00 0.00 0.00 3.14
3250 11332 1.140312 AGGTTCATCGGTGGGCATAT 58.860 50.000 0.00 0.00 0.00 1.78
3251 11333 1.202806 AGGTTCATCGGTGGGCATATG 60.203 52.381 0.00 0.00 0.00 1.78
3252 11334 0.593128 GTTCATCGGTGGGCATATGC 59.407 55.000 19.79 19.79 41.14 3.14
3253 11335 0.473755 TTCATCGGTGGGCATATGCT 59.526 50.000 26.12 2.45 41.70 3.79
3254 11336 0.473755 TCATCGGTGGGCATATGCTT 59.526 50.000 26.12 1.61 41.70 3.91
3255 11337 0.594602 CATCGGTGGGCATATGCTTG 59.405 55.000 26.12 12.10 41.70 4.01
3256 11338 0.183492 ATCGGTGGGCATATGCTTGT 59.817 50.000 26.12 4.37 41.70 3.16
3257 11339 0.747644 TCGGTGGGCATATGCTTGTG 60.748 55.000 26.12 13.07 41.70 3.33
3258 11340 1.438814 GGTGGGCATATGCTTGTGC 59.561 57.895 26.12 12.18 41.70 4.57
3280 11362 5.279384 GCATCATGCAGTAGAAGATTTTGG 58.721 41.667 4.20 0.00 44.26 3.28
3281 11363 4.970662 TCATGCAGTAGAAGATTTTGGC 57.029 40.909 0.00 0.00 0.00 4.52
3282 11364 3.374988 TCATGCAGTAGAAGATTTTGGCG 59.625 43.478 0.00 0.00 0.00 5.69
3283 11365 2.083774 TGCAGTAGAAGATTTTGGCGG 58.916 47.619 0.00 0.00 0.00 6.13
3284 11366 2.290008 TGCAGTAGAAGATTTTGGCGGA 60.290 45.455 0.00 0.00 0.00 5.54
3285 11367 2.747446 GCAGTAGAAGATTTTGGCGGAA 59.253 45.455 0.00 0.00 0.00 4.30
3286 11368 3.190535 GCAGTAGAAGATTTTGGCGGAAA 59.809 43.478 0.00 0.00 0.00 3.13
3287 11369 4.320935 GCAGTAGAAGATTTTGGCGGAAAA 60.321 41.667 0.00 0.00 37.93 2.29
3288 11370 5.622233 GCAGTAGAAGATTTTGGCGGAAAAT 60.622 40.000 5.08 5.08 45.29 1.82
3289 11371 5.801947 CAGTAGAAGATTTTGGCGGAAAATG 59.198 40.000 9.19 0.00 43.12 2.32
3290 11372 5.710099 AGTAGAAGATTTTGGCGGAAAATGA 59.290 36.000 9.19 0.00 43.12 2.57
3291 11373 4.809673 AGAAGATTTTGGCGGAAAATGAC 58.190 39.130 9.19 0.00 43.12 3.06
3292 11374 3.592898 AGATTTTGGCGGAAAATGACC 57.407 42.857 9.19 0.00 43.12 4.02
3293 11375 2.233676 AGATTTTGGCGGAAAATGACCC 59.766 45.455 9.19 0.00 43.12 4.46
3294 11376 1.710816 TTTTGGCGGAAAATGACCCT 58.289 45.000 0.00 0.00 0.00 4.34
3295 11377 1.253100 TTTGGCGGAAAATGACCCTC 58.747 50.000 0.00 0.00 0.00 4.30
3296 11378 0.610785 TTGGCGGAAAATGACCCTCC 60.611 55.000 0.00 0.00 0.00 4.30
3297 11379 1.303282 GGCGGAAAATGACCCTCCT 59.697 57.895 0.00 0.00 0.00 3.69
3298 11380 0.323451 GGCGGAAAATGACCCTCCTT 60.323 55.000 0.00 0.00 0.00 3.36
3299 11381 1.064979 GGCGGAAAATGACCCTCCTTA 60.065 52.381 0.00 0.00 0.00 2.69
3300 11382 2.014857 GCGGAAAATGACCCTCCTTAC 58.985 52.381 0.00 0.00 0.00 2.34
3301 11383 2.640184 CGGAAAATGACCCTCCTTACC 58.360 52.381 0.00 0.00 0.00 2.85
3302 11384 2.026636 CGGAAAATGACCCTCCTTACCA 60.027 50.000 0.00 0.00 0.00 3.25
3303 11385 3.560453 CGGAAAATGACCCTCCTTACCAA 60.560 47.826 0.00 0.00 0.00 3.67
3304 11386 4.017126 GGAAAATGACCCTCCTTACCAAG 58.983 47.826 0.00 0.00 0.00 3.61
3305 11387 4.263771 GGAAAATGACCCTCCTTACCAAGA 60.264 45.833 0.00 0.00 0.00 3.02
3306 11388 5.321927 GAAAATGACCCTCCTTACCAAGAA 58.678 41.667 0.00 0.00 0.00 2.52
3307 11389 4.302559 AATGACCCTCCTTACCAAGAAC 57.697 45.455 0.00 0.00 0.00 3.01
3308 11390 2.696775 TGACCCTCCTTACCAAGAACA 58.303 47.619 0.00 0.00 0.00 3.18
3309 11391 3.050089 TGACCCTCCTTACCAAGAACAA 58.950 45.455 0.00 0.00 0.00 2.83
3310 11392 3.460340 TGACCCTCCTTACCAAGAACAAA 59.540 43.478 0.00 0.00 0.00 2.83
3311 11393 3.819337 GACCCTCCTTACCAAGAACAAAC 59.181 47.826 0.00 0.00 0.00 2.93
3312 11394 3.203487 ACCCTCCTTACCAAGAACAAACA 59.797 43.478 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.719355 TGTAAGATGATAAAGCTGAGTTTGTAA 57.281 29.630 0.00 0.00 0.00 2.41
52 55 9.950680 GCAAATCGAATCTTATATTCTTCCAAA 57.049 29.630 0.00 0.00 0.00 3.28
53 56 9.119418 TGCAAATCGAATCTTATATTCTTCCAA 57.881 29.630 0.00 0.00 0.00 3.53
97 100 2.731976 GTCGTGATCTTCTTGTGTGACC 59.268 50.000 0.00 0.00 0.00 4.02
146 1475 3.206150 GGCAATCATGTAGACGGACATT 58.794 45.455 0.00 0.00 37.99 2.71
151 1480 4.389992 GTGATATGGCAATCATGTAGACGG 59.610 45.833 13.03 0.00 38.13 4.79
220 1550 9.569167 GCAGATGTATATTCATTCATTTCATGG 57.431 33.333 0.00 0.00 0.00 3.66
269 1600 7.172019 TGAGTCCATCATGATTTTGTATCATCG 59.828 37.037 5.16 0.00 36.69 3.84
274 1605 6.425735 TGGTGAGTCCATCATGATTTTGTAT 58.574 36.000 5.16 0.00 41.93 2.29
324 1665 2.666508 CCATTTACTCAGTTCGTGTCGG 59.333 50.000 0.00 0.00 0.00 4.79
327 1668 4.330944 TGTCCATTTACTCAGTTCGTGT 57.669 40.909 0.00 0.00 0.00 4.49
330 1671 4.988540 TCTGTTGTCCATTTACTCAGTTCG 59.011 41.667 0.00 0.00 0.00 3.95
347 1688 6.015940 AGCAAAAGTTTTAGATCCCTCTGTTG 60.016 38.462 0.00 0.00 32.66 3.33
369 1710 4.002906 ACTTTGTTCTAATCCACGAGCA 57.997 40.909 0.00 0.00 0.00 4.26
374 1715 7.573283 GCAAGGTAGAACTTTGTTCTAATCCAC 60.573 40.741 18.12 10.38 37.48 4.02
376 1717 6.655425 AGCAAGGTAGAACTTTGTTCTAATCC 59.345 38.462 18.12 15.99 37.48 3.01
382 1723 4.578928 TCCAAGCAAGGTAGAACTTTGTTC 59.421 41.667 2.54 2.54 37.48 3.18
392 1733 0.400213 TGGGTGTCCAAGCAAGGTAG 59.600 55.000 0.00 0.00 40.73 3.18
446 1787 2.884639 ACGCCTAATCATTTACATGCCC 59.115 45.455 0.00 0.00 0.00 5.36
465 1806 7.215568 CACAAAAGTGTTGTACTGTTTTCTACG 59.784 37.037 0.00 0.00 40.26 3.51
474 1815 5.303747 TGGAACACAAAAGTGTTGTACTG 57.696 39.130 17.58 0.00 46.25 2.74
596 2793 1.068434 TGCTTGCTTGTAACCTTTGGC 59.932 47.619 0.00 0.00 0.00 4.52
603 2800 7.541783 TGTCAATCAATTATGCTTGCTTGTAAC 59.458 33.333 0.00 0.00 35.07 2.50
690 2888 6.400303 CCTTTGCTGATTTGCGATTTAAGTTG 60.400 38.462 0.00 0.00 35.36 3.16
725 2923 1.069227 GGTAACGCTTGAAAGGTGCAG 60.069 52.381 0.00 0.00 0.00 4.41
821 3022 3.163594 CGAAAATTTCAGTCGTCCATGC 58.836 45.455 6.53 0.00 0.00 4.06
1026 3228 1.379044 GCCATGGTGTTGGAGGAGG 60.379 63.158 14.67 0.00 39.25 4.30
1212 3430 5.009010 ACTTGTACTGCCAAAGAAACTCATG 59.991 40.000 0.00 0.00 0.00 3.07
1365 3583 4.866508 TTACATACGGATCCCAGCTTAG 57.133 45.455 6.06 0.00 0.00 2.18
1464 3682 3.307691 CCTTAAACTGATGGGCACTCTGA 60.308 47.826 0.00 0.00 0.00 3.27
1560 3778 7.984422 TTCTAGAAAAATCTGTTGATGAGCA 57.016 32.000 1.68 0.00 32.44 4.26
1603 3823 5.414789 TGCTCAATACTTGGTGCTAAGTA 57.585 39.130 9.90 9.90 44.59 2.24
2077 4313 2.024414 GCAGAGTGGTGGACAAAAGTT 58.976 47.619 0.00 0.00 0.00 2.66
2090 4326 3.051210 TGGTCGTCCAGCAGAGTG 58.949 61.111 0.00 0.00 39.03 3.51
2230 4507 0.385473 GACAATGGTCCGCGTGTTTG 60.385 55.000 4.92 4.24 38.12 2.93
2648 10621 7.844009 TCCATACTAGTTACAAAAATCCGAGT 58.156 34.615 0.00 0.00 0.00 4.18
2882 10964 1.229951 TTCACAGGGGAGAGGCCAT 60.230 57.895 5.01 0.00 38.95 4.40
2933 11015 3.924114 TGAAGTGGTGTTCTCTTGGAA 57.076 42.857 0.00 0.00 0.00 3.53
2934 11016 3.924114 TTGAAGTGGTGTTCTCTTGGA 57.076 42.857 0.00 0.00 0.00 3.53
2935 11017 4.199310 TCTTTGAAGTGGTGTTCTCTTGG 58.801 43.478 0.00 0.00 0.00 3.61
2936 11018 5.586243 TCTTCTTTGAAGTGGTGTTCTCTTG 59.414 40.000 7.13 0.00 0.00 3.02
2937 11019 5.745227 TCTTCTTTGAAGTGGTGTTCTCTT 58.255 37.500 7.13 0.00 0.00 2.85
2938 11020 5.359194 TCTTCTTTGAAGTGGTGTTCTCT 57.641 39.130 7.13 0.00 0.00 3.10
2939 11021 6.436843 TTTCTTCTTTGAAGTGGTGTTCTC 57.563 37.500 7.13 0.00 0.00 2.87
2940 11022 5.358160 CCTTTCTTCTTTGAAGTGGTGTTCT 59.642 40.000 7.13 0.00 0.00 3.01
2941 11023 5.450550 CCCTTTCTTCTTTGAAGTGGTGTTC 60.451 44.000 7.13 0.00 0.00 3.18
2942 11024 4.402474 CCCTTTCTTCTTTGAAGTGGTGTT 59.598 41.667 7.13 0.00 0.00 3.32
2943 11025 3.954258 CCCTTTCTTCTTTGAAGTGGTGT 59.046 43.478 7.13 0.00 0.00 4.16
2944 11026 3.954258 ACCCTTTCTTCTTTGAAGTGGTG 59.046 43.478 7.13 5.88 33.44 4.17
2945 11027 3.954258 CACCCTTTCTTCTTTGAAGTGGT 59.046 43.478 7.13 7.23 34.31 4.16
2946 11028 3.954258 ACACCCTTTCTTCTTTGAAGTGG 59.046 43.478 7.13 7.94 29.53 4.00
2947 11029 4.036852 GGACACCCTTTCTTCTTTGAAGTG 59.963 45.833 7.13 0.00 0.00 3.16
2948 11030 4.207955 GGACACCCTTTCTTCTTTGAAGT 58.792 43.478 7.13 0.00 0.00 3.01
2949 11031 4.207165 TGGACACCCTTTCTTCTTTGAAG 58.793 43.478 1.23 1.23 0.00 3.02
2950 11032 4.243793 TGGACACCCTTTCTTCTTTGAA 57.756 40.909 0.00 0.00 0.00 2.69
2951 11033 3.943671 TGGACACCCTTTCTTCTTTGA 57.056 42.857 0.00 0.00 0.00 2.69
2952 11034 5.532557 GATTTGGACACCCTTTCTTCTTTG 58.467 41.667 0.00 0.00 0.00 2.77
2953 11035 4.278419 CGATTTGGACACCCTTTCTTCTTT 59.722 41.667 0.00 0.00 0.00 2.52
2954 11036 3.821033 CGATTTGGACACCCTTTCTTCTT 59.179 43.478 0.00 0.00 0.00 2.52
2955 11037 3.181443 ACGATTTGGACACCCTTTCTTCT 60.181 43.478 0.00 0.00 0.00 2.85
2956 11038 3.146847 ACGATTTGGACACCCTTTCTTC 58.853 45.455 0.00 0.00 0.00 2.87
2957 11039 3.146847 GACGATTTGGACACCCTTTCTT 58.853 45.455 0.00 0.00 0.00 2.52
2958 11040 2.372172 AGACGATTTGGACACCCTTTCT 59.628 45.455 0.00 0.00 0.00 2.52
2959 11041 2.779506 AGACGATTTGGACACCCTTTC 58.220 47.619 0.00 0.00 0.00 2.62
2960 11042 2.951229 AGACGATTTGGACACCCTTT 57.049 45.000 0.00 0.00 0.00 3.11
2961 11043 2.635915 TGTAGACGATTTGGACACCCTT 59.364 45.455 0.00 0.00 0.00 3.95
2962 11044 2.253610 TGTAGACGATTTGGACACCCT 58.746 47.619 0.00 0.00 0.00 4.34
2963 11045 2.754946 TGTAGACGATTTGGACACCC 57.245 50.000 0.00 0.00 0.00 4.61
2964 11046 2.351726 GCATGTAGACGATTTGGACACC 59.648 50.000 0.00 0.00 0.00 4.16
2965 11047 3.000041 TGCATGTAGACGATTTGGACAC 59.000 45.455 0.00 0.00 0.00 3.67
2966 11048 3.261580 CTGCATGTAGACGATTTGGACA 58.738 45.455 4.57 0.00 0.00 4.02
2967 11049 2.030946 GCTGCATGTAGACGATTTGGAC 59.969 50.000 15.68 0.00 0.00 4.02
2968 11050 2.279741 GCTGCATGTAGACGATTTGGA 58.720 47.619 15.68 0.00 0.00 3.53
2969 11051 2.009051 TGCTGCATGTAGACGATTTGG 58.991 47.619 15.68 0.00 0.00 3.28
2970 11052 3.310501 TGATGCTGCATGTAGACGATTTG 59.689 43.478 21.53 0.00 0.00 2.32
2971 11053 3.534554 TGATGCTGCATGTAGACGATTT 58.465 40.909 21.53 0.00 0.00 2.17
2972 11054 3.183793 TGATGCTGCATGTAGACGATT 57.816 42.857 21.53 0.00 0.00 3.34
2973 11055 2.896745 TGATGCTGCATGTAGACGAT 57.103 45.000 21.53 2.68 0.00 3.73
2974 11056 2.671130 TTGATGCTGCATGTAGACGA 57.329 45.000 21.53 1.79 0.00 4.20
2975 11057 3.803778 TGTATTGATGCTGCATGTAGACG 59.196 43.478 21.53 0.00 0.00 4.18
2976 11058 5.936686 ATGTATTGATGCTGCATGTAGAC 57.063 39.130 21.53 14.37 0.00 2.59
2977 11059 5.824097 ACAATGTATTGATGCTGCATGTAGA 59.176 36.000 21.53 8.92 40.14 2.59
2978 11060 6.017357 AGACAATGTATTGATGCTGCATGTAG 60.017 38.462 21.53 6.42 40.14 2.74
2979 11061 5.824097 AGACAATGTATTGATGCTGCATGTA 59.176 36.000 21.53 7.80 40.14 2.29
2980 11062 4.643334 AGACAATGTATTGATGCTGCATGT 59.357 37.500 21.53 9.71 40.14 3.21
2981 11063 5.183014 AGACAATGTATTGATGCTGCATG 57.817 39.130 21.53 6.19 40.14 4.06
2982 11064 6.017357 CACTAGACAATGTATTGATGCTGCAT 60.017 38.462 16.20 16.20 40.14 3.96
2983 11065 5.295045 CACTAGACAATGTATTGATGCTGCA 59.705 40.000 4.13 4.13 40.14 4.41
2984 11066 5.295292 ACACTAGACAATGTATTGATGCTGC 59.705 40.000 11.29 0.00 40.14 5.25
2985 11067 6.915544 ACACTAGACAATGTATTGATGCTG 57.084 37.500 11.29 3.16 40.14 4.41
2986 11068 7.201556 CGAAACACTAGACAATGTATTGATGCT 60.202 37.037 11.29 7.74 40.14 3.79
2987 11069 6.901887 CGAAACACTAGACAATGTATTGATGC 59.098 38.462 11.29 1.35 40.14 3.91
2988 11070 7.963981 ACGAAACACTAGACAATGTATTGATG 58.036 34.615 11.29 4.52 40.14 3.07
2989 11071 8.035394 AGACGAAACACTAGACAATGTATTGAT 58.965 33.333 11.29 2.75 40.14 2.57
2990 11072 7.328493 CAGACGAAACACTAGACAATGTATTGA 59.672 37.037 11.29 0.00 40.14 2.57
2991 11073 7.411912 CCAGACGAAACACTAGACAATGTATTG 60.412 40.741 0.00 3.17 43.26 1.90
2992 11074 6.590292 CCAGACGAAACACTAGACAATGTATT 59.410 38.462 0.00 0.00 0.00 1.89
2993 11075 6.100004 CCAGACGAAACACTAGACAATGTAT 58.900 40.000 0.00 0.00 0.00 2.29
2994 11076 5.466819 CCAGACGAAACACTAGACAATGTA 58.533 41.667 0.00 0.00 0.00 2.29
2995 11077 4.307432 CCAGACGAAACACTAGACAATGT 58.693 43.478 0.00 0.00 0.00 2.71
2996 11078 3.679980 CCCAGACGAAACACTAGACAATG 59.320 47.826 0.00 0.00 0.00 2.82
2997 11079 3.306780 CCCCAGACGAAACACTAGACAAT 60.307 47.826 0.00 0.00 0.00 2.71
2998 11080 2.036733 CCCCAGACGAAACACTAGACAA 59.963 50.000 0.00 0.00 0.00 3.18
2999 11081 1.616865 CCCCAGACGAAACACTAGACA 59.383 52.381 0.00 0.00 0.00 3.41
3000 11082 1.672145 GCCCCAGACGAAACACTAGAC 60.672 57.143 0.00 0.00 0.00 2.59
3001 11083 0.606604 GCCCCAGACGAAACACTAGA 59.393 55.000 0.00 0.00 0.00 2.43
3002 11084 0.608640 AGCCCCAGACGAAACACTAG 59.391 55.000 0.00 0.00 0.00 2.57
3003 11085 0.606604 GAGCCCCAGACGAAACACTA 59.393 55.000 0.00 0.00 0.00 2.74
3004 11086 1.371558 GAGCCCCAGACGAAACACT 59.628 57.895 0.00 0.00 0.00 3.55
3005 11087 1.671379 GGAGCCCCAGACGAAACAC 60.671 63.158 0.00 0.00 0.00 3.32
3006 11088 1.701031 TTGGAGCCCCAGACGAAACA 61.701 55.000 0.00 0.00 44.60 2.83
3007 11089 0.322546 ATTGGAGCCCCAGACGAAAC 60.323 55.000 0.00 0.00 44.60 2.78
3008 11090 0.035439 GATTGGAGCCCCAGACGAAA 60.035 55.000 0.00 0.00 44.60 3.46
3009 11091 1.198094 TGATTGGAGCCCCAGACGAA 61.198 55.000 0.00 0.00 44.60 3.85
3010 11092 1.198094 TTGATTGGAGCCCCAGACGA 61.198 55.000 0.00 0.00 44.60 4.20
3011 11093 0.107017 ATTGATTGGAGCCCCAGACG 60.107 55.000 0.00 0.00 44.60 4.18
3012 11094 1.213926 AGATTGATTGGAGCCCCAGAC 59.786 52.381 0.00 0.00 44.60 3.51
3013 11095 1.213678 CAGATTGATTGGAGCCCCAGA 59.786 52.381 0.00 0.00 44.60 3.86
3014 11096 1.064166 ACAGATTGATTGGAGCCCCAG 60.064 52.381 0.00 0.00 44.60 4.45
3015 11097 1.002069 ACAGATTGATTGGAGCCCCA 58.998 50.000 0.00 0.00 41.64 4.96
3016 11098 3.297134 TTACAGATTGATTGGAGCCCC 57.703 47.619 0.00 0.00 0.00 5.80
3017 11099 6.547510 ACTTATTTACAGATTGATTGGAGCCC 59.452 38.462 0.00 0.00 0.00 5.19
3018 11100 7.255277 GGACTTATTTACAGATTGATTGGAGCC 60.255 40.741 0.00 0.00 0.00 4.70
3019 11101 7.283127 TGGACTTATTTACAGATTGATTGGAGC 59.717 37.037 0.00 0.00 0.00 4.70
3020 11102 8.737168 TGGACTTATTTACAGATTGATTGGAG 57.263 34.615 0.00 0.00 0.00 3.86
3021 11103 9.527157 TTTGGACTTATTTACAGATTGATTGGA 57.473 29.630 0.00 0.00 0.00 3.53
3025 11107 9.927081 AGGATTTGGACTTATTTACAGATTGAT 57.073 29.630 0.00 0.00 0.00 2.57
3026 11108 9.753674 AAGGATTTGGACTTATTTACAGATTGA 57.246 29.630 0.00 0.00 0.00 2.57
3057 11139 9.528489 ACCACTTGCTTTTCTCCTATAATTTTA 57.472 29.630 0.00 0.00 0.00 1.52
3058 11140 8.422577 ACCACTTGCTTTTCTCCTATAATTTT 57.577 30.769 0.00 0.00 0.00 1.82
3059 11141 7.890655 AGACCACTTGCTTTTCTCCTATAATTT 59.109 33.333 0.00 0.00 0.00 1.82
3060 11142 7.406104 AGACCACTTGCTTTTCTCCTATAATT 58.594 34.615 0.00 0.00 0.00 1.40
3061 11143 6.963322 AGACCACTTGCTTTTCTCCTATAAT 58.037 36.000 0.00 0.00 0.00 1.28
3062 11144 6.213600 AGAGACCACTTGCTTTTCTCCTATAA 59.786 38.462 0.00 0.00 34.42 0.98
3063 11145 5.721960 AGAGACCACTTGCTTTTCTCCTATA 59.278 40.000 0.00 0.00 34.42 1.31
3064 11146 4.534103 AGAGACCACTTGCTTTTCTCCTAT 59.466 41.667 0.00 0.00 34.42 2.57
3065 11147 3.904339 AGAGACCACTTGCTTTTCTCCTA 59.096 43.478 0.00 0.00 34.42 2.94
3066 11148 2.708325 AGAGACCACTTGCTTTTCTCCT 59.292 45.455 0.00 0.00 34.42 3.69
3067 11149 3.133141 AGAGACCACTTGCTTTTCTCC 57.867 47.619 0.00 0.00 34.42 3.71
3068 11150 4.791088 GCAAAGAGACCACTTGCTTTTCTC 60.791 45.833 0.00 0.00 34.14 2.87
3069 11151 3.067320 GCAAAGAGACCACTTGCTTTTCT 59.933 43.478 0.00 0.00 0.00 2.52
3070 11152 3.067320 AGCAAAGAGACCACTTGCTTTTC 59.933 43.478 2.79 0.00 33.84 2.29
3071 11153 3.026694 AGCAAAGAGACCACTTGCTTTT 58.973 40.909 2.79 0.00 33.84 2.27
3072 11154 2.620585 GAGCAAAGAGACCACTTGCTTT 59.379 45.455 9.66 0.00 35.84 3.51
3073 11155 2.225467 GAGCAAAGAGACCACTTGCTT 58.775 47.619 9.66 0.00 35.84 3.91
3074 11156 1.141657 TGAGCAAAGAGACCACTTGCT 59.858 47.619 8.18 8.18 37.15 3.91
3075 11157 1.597742 TGAGCAAAGAGACCACTTGC 58.402 50.000 0.00 0.00 0.00 4.01
3076 11158 3.058432 CACATGAGCAAAGAGACCACTTG 60.058 47.826 0.00 0.00 0.00 3.16
3077 11159 3.144506 CACATGAGCAAAGAGACCACTT 58.855 45.455 0.00 0.00 0.00 3.16
3078 11160 2.369860 TCACATGAGCAAAGAGACCACT 59.630 45.455 0.00 0.00 0.00 4.00
3079 11161 2.740981 CTCACATGAGCAAAGAGACCAC 59.259 50.000 0.00 0.00 35.13 4.16
3080 11162 3.049708 CTCACATGAGCAAAGAGACCA 57.950 47.619 0.00 0.00 35.13 4.02
3091 11173 1.830279 ACCCATTGTGCTCACATGAG 58.170 50.000 0.00 4.43 41.52 2.90
3092 11174 2.291209 AACCCATTGTGCTCACATGA 57.709 45.000 0.00 0.00 41.52 3.07
3093 11175 2.296752 TGAAACCCATTGTGCTCACATG 59.703 45.455 3.31 0.00 41.52 3.21
3094 11176 2.596346 TGAAACCCATTGTGCTCACAT 58.404 42.857 3.31 0.00 41.52 3.21
3095 11177 2.064434 TGAAACCCATTGTGCTCACA 57.936 45.000 0.00 0.00 39.98 3.58
3096 11178 2.094545 GGATGAAACCCATTGTGCTCAC 60.095 50.000 0.00 0.00 35.17 3.51
3097 11179 2.170166 GGATGAAACCCATTGTGCTCA 58.830 47.619 0.00 0.00 35.17 4.26
3098 11180 2.947448 GGATGAAACCCATTGTGCTC 57.053 50.000 0.00 0.00 35.17 4.26
3107 11189 0.909623 TTCTCCTCGGGATGAAACCC 59.090 55.000 0.00 0.00 45.92 4.11
3108 11190 2.092914 ACATTCTCCTCGGGATGAAACC 60.093 50.000 0.00 0.00 0.00 3.27
3109 11191 3.198872 GACATTCTCCTCGGGATGAAAC 58.801 50.000 0.00 0.00 0.00 2.78
3110 11192 2.837591 TGACATTCTCCTCGGGATGAAA 59.162 45.455 0.00 0.00 0.00 2.69
3111 11193 2.432146 CTGACATTCTCCTCGGGATGAA 59.568 50.000 0.00 0.00 0.00 2.57
3112 11194 2.034878 CTGACATTCTCCTCGGGATGA 58.965 52.381 0.00 0.00 0.00 2.92
3113 11195 1.759445 ACTGACATTCTCCTCGGGATG 59.241 52.381 0.00 0.00 0.00 3.51
3114 11196 1.759445 CACTGACATTCTCCTCGGGAT 59.241 52.381 0.00 0.00 0.00 3.85
3115 11197 1.186200 CACTGACATTCTCCTCGGGA 58.814 55.000 0.00 0.00 0.00 5.14
3116 11198 0.460987 GCACTGACATTCTCCTCGGG 60.461 60.000 0.00 0.00 0.00 5.14
3117 11199 0.460987 GGCACTGACATTCTCCTCGG 60.461 60.000 0.00 0.00 0.00 4.63
3118 11200 0.534412 AGGCACTGACATTCTCCTCG 59.466 55.000 0.00 0.00 37.18 4.63
3119 11201 2.235898 AGAAGGCACTGACATTCTCCTC 59.764 50.000 0.00 0.00 35.94 3.71
3120 11202 2.264455 AGAAGGCACTGACATTCTCCT 58.736 47.619 0.00 0.00 35.94 3.69
3121 11203 2.777832 AGAAGGCACTGACATTCTCC 57.222 50.000 0.00 0.00 35.94 3.71
3122 11204 4.081420 TCCTTAGAAGGCACTGACATTCTC 60.081 45.833 3.22 0.00 46.06 2.87
3123 11205 3.840666 TCCTTAGAAGGCACTGACATTCT 59.159 43.478 3.22 7.32 46.06 2.40
3124 11206 4.187694 CTCCTTAGAAGGCACTGACATTC 58.812 47.826 3.22 0.00 46.06 2.67
3125 11207 3.620966 GCTCCTTAGAAGGCACTGACATT 60.621 47.826 3.22 0.00 46.06 2.71
3126 11208 2.093235 GCTCCTTAGAAGGCACTGACAT 60.093 50.000 3.22 0.00 46.06 3.06
3127 11209 1.276421 GCTCCTTAGAAGGCACTGACA 59.724 52.381 3.22 0.00 46.06 3.58
3128 11210 1.276421 TGCTCCTTAGAAGGCACTGAC 59.724 52.381 3.22 0.00 46.06 3.51
3129 11211 1.644509 TGCTCCTTAGAAGGCACTGA 58.355 50.000 3.22 0.00 46.06 3.41
3130 11212 2.286872 CATGCTCCTTAGAAGGCACTG 58.713 52.381 3.22 0.00 46.06 3.66
3131 11213 1.912043 ACATGCTCCTTAGAAGGCACT 59.088 47.619 3.22 0.00 46.06 4.40
3132 11214 2.409948 ACATGCTCCTTAGAAGGCAC 57.590 50.000 3.22 0.00 46.06 5.01
3133 11215 2.356125 GGAACATGCTCCTTAGAAGGCA 60.356 50.000 7.95 0.00 46.06 4.75
3134 11216 2.293170 GGAACATGCTCCTTAGAAGGC 58.707 52.381 7.95 0.00 46.06 4.35
3136 11218 3.452474 CTCGGAACATGCTCCTTAGAAG 58.548 50.000 13.19 0.00 32.82 2.85
3137 11219 2.418746 GCTCGGAACATGCTCCTTAGAA 60.419 50.000 13.19 0.00 32.82 2.10
3138 11220 1.137086 GCTCGGAACATGCTCCTTAGA 59.863 52.381 13.19 2.75 32.82 2.10
3139 11221 1.576356 GCTCGGAACATGCTCCTTAG 58.424 55.000 13.19 10.86 32.82 2.18
3140 11222 0.179111 CGCTCGGAACATGCTCCTTA 60.179 55.000 13.19 0.78 32.82 2.69
3141 11223 1.448540 CGCTCGGAACATGCTCCTT 60.449 57.895 13.19 0.00 32.82 3.36
3142 11224 2.172483 AACGCTCGGAACATGCTCCT 62.172 55.000 13.19 0.00 32.82 3.69
3143 11225 1.696832 GAACGCTCGGAACATGCTCC 61.697 60.000 4.96 4.96 0.00 4.70
3144 11226 1.014044 TGAACGCTCGGAACATGCTC 61.014 55.000 0.00 0.00 0.00 4.26
3145 11227 0.602638 TTGAACGCTCGGAACATGCT 60.603 50.000 0.00 0.00 0.00 3.79
3146 11228 0.452784 GTTGAACGCTCGGAACATGC 60.453 55.000 0.00 0.00 0.00 4.06
3147 11229 1.136252 CAGTTGAACGCTCGGAACATG 60.136 52.381 0.00 0.00 0.00 3.21
3148 11230 1.148310 CAGTTGAACGCTCGGAACAT 58.852 50.000 0.00 0.00 0.00 2.71
3149 11231 0.103390 TCAGTTGAACGCTCGGAACA 59.897 50.000 0.00 0.00 0.00 3.18
3150 11232 1.429463 ATCAGTTGAACGCTCGGAAC 58.571 50.000 0.00 0.00 0.00 3.62
3151 11233 3.306917 TTATCAGTTGAACGCTCGGAA 57.693 42.857 0.00 0.00 0.00 4.30
3152 11234 3.306917 TTTATCAGTTGAACGCTCGGA 57.693 42.857 0.00 0.00 0.00 4.55
3153 11235 4.600012 ATTTTATCAGTTGAACGCTCGG 57.400 40.909 0.00 0.00 0.00 4.63
3154 11236 8.004344 CCTATTATTTTATCAGTTGAACGCTCG 58.996 37.037 0.00 0.00 0.00 5.03
3155 11237 9.042008 TCCTATTATTTTATCAGTTGAACGCTC 57.958 33.333 0.00 0.00 0.00 5.03
3156 11238 8.958119 TCCTATTATTTTATCAGTTGAACGCT 57.042 30.769 0.00 0.00 0.00 5.07
3157 11239 9.813080 GATCCTATTATTTTATCAGTTGAACGC 57.187 33.333 0.00 0.00 0.00 4.84
3192 11274 4.512198 CAGAGCACCATGAAGATCAAGATC 59.488 45.833 1.81 1.81 38.09 2.75
3193 11275 4.080469 ACAGAGCACCATGAAGATCAAGAT 60.080 41.667 0.00 0.00 0.00 2.40
3194 11276 3.262660 ACAGAGCACCATGAAGATCAAGA 59.737 43.478 0.00 0.00 0.00 3.02
3195 11277 3.607741 ACAGAGCACCATGAAGATCAAG 58.392 45.455 0.00 0.00 0.00 3.02
3196 11278 3.008266 TGACAGAGCACCATGAAGATCAA 59.992 43.478 0.00 0.00 0.00 2.57
3197 11279 2.568509 TGACAGAGCACCATGAAGATCA 59.431 45.455 0.00 0.00 0.00 2.92
3198 11280 3.257469 TGACAGAGCACCATGAAGATC 57.743 47.619 0.00 0.00 0.00 2.75
3199 11281 3.928005 ATGACAGAGCACCATGAAGAT 57.072 42.857 0.00 0.00 0.00 2.40
3200 11282 4.202295 GGATATGACAGAGCACCATGAAGA 60.202 45.833 0.00 0.00 0.00 2.87
3201 11283 4.063689 GGATATGACAGAGCACCATGAAG 58.936 47.826 0.00 0.00 0.00 3.02
3202 11284 3.455543 TGGATATGACAGAGCACCATGAA 59.544 43.478 0.00 0.00 0.00 2.57
3203 11285 3.040477 TGGATATGACAGAGCACCATGA 58.960 45.455 0.00 0.00 0.00 3.07
3204 11286 3.480505 TGGATATGACAGAGCACCATG 57.519 47.619 0.00 0.00 0.00 3.66
3205 11287 4.719026 AATGGATATGACAGAGCACCAT 57.281 40.909 0.00 0.00 38.12 3.55
3206 11288 4.201657 CAAATGGATATGACAGAGCACCA 58.798 43.478 0.00 0.00 0.00 4.17
3207 11289 3.004106 GCAAATGGATATGACAGAGCACC 59.996 47.826 0.00 0.00 0.00 5.01
3208 11290 3.628942 TGCAAATGGATATGACAGAGCAC 59.371 43.478 0.00 0.00 0.00 4.40
3209 11291 3.888583 TGCAAATGGATATGACAGAGCA 58.111 40.909 0.00 0.00 0.00 4.26
3210 11292 4.261489 CCTTGCAAATGGATATGACAGAGC 60.261 45.833 0.00 0.00 0.00 4.09
3211 11293 4.885907 ACCTTGCAAATGGATATGACAGAG 59.114 41.667 11.47 0.00 0.00 3.35
3212 11294 4.858850 ACCTTGCAAATGGATATGACAGA 58.141 39.130 11.47 0.00 0.00 3.41
3213 11295 5.125900 TGAACCTTGCAAATGGATATGACAG 59.874 40.000 11.47 0.00 0.00 3.51
3214 11296 5.015515 TGAACCTTGCAAATGGATATGACA 58.984 37.500 11.47 0.76 0.00 3.58
3215 11297 5.581126 TGAACCTTGCAAATGGATATGAC 57.419 39.130 11.47 0.00 0.00 3.06
3216 11298 5.008911 CGATGAACCTTGCAAATGGATATGA 59.991 40.000 11.47 0.00 0.00 2.15
3217 11299 5.217393 CGATGAACCTTGCAAATGGATATG 58.783 41.667 11.47 0.00 0.00 1.78
3218 11300 4.279169 CCGATGAACCTTGCAAATGGATAT 59.721 41.667 11.47 3.10 0.00 1.63
3219 11301 3.631686 CCGATGAACCTTGCAAATGGATA 59.368 43.478 11.47 0.00 0.00 2.59
3220 11302 2.428171 CCGATGAACCTTGCAAATGGAT 59.572 45.455 11.47 0.00 0.00 3.41
3221 11303 1.818060 CCGATGAACCTTGCAAATGGA 59.182 47.619 11.47 0.00 0.00 3.41
3222 11304 1.545582 ACCGATGAACCTTGCAAATGG 59.454 47.619 0.00 1.24 0.00 3.16
3223 11305 2.598589 CACCGATGAACCTTGCAAATG 58.401 47.619 0.00 0.00 0.00 2.32
3224 11306 1.545582 CCACCGATGAACCTTGCAAAT 59.454 47.619 0.00 0.00 0.00 2.32
3225 11307 0.958091 CCACCGATGAACCTTGCAAA 59.042 50.000 0.00 0.00 0.00 3.68
3226 11308 0.893270 CCCACCGATGAACCTTGCAA 60.893 55.000 0.00 0.00 0.00 4.08
3227 11309 1.303236 CCCACCGATGAACCTTGCA 60.303 57.895 0.00 0.00 0.00 4.08
3228 11310 2.700773 GCCCACCGATGAACCTTGC 61.701 63.158 0.00 0.00 0.00 4.01
3229 11311 0.680921 ATGCCCACCGATGAACCTTG 60.681 55.000 0.00 0.00 0.00 3.61
3230 11312 0.916086 TATGCCCACCGATGAACCTT 59.084 50.000 0.00 0.00 0.00 3.50
3231 11313 1.140312 ATATGCCCACCGATGAACCT 58.860 50.000 0.00 0.00 0.00 3.50
3232 11314 1.238439 CATATGCCCACCGATGAACC 58.762 55.000 0.00 0.00 0.00 3.62
3233 11315 0.593128 GCATATGCCCACCGATGAAC 59.407 55.000 17.26 0.00 34.31 3.18
3234 11316 0.473755 AGCATATGCCCACCGATGAA 59.526 50.000 23.96 0.00 43.38 2.57
3235 11317 0.473755 AAGCATATGCCCACCGATGA 59.526 50.000 23.96 0.00 43.38 2.92
3236 11318 0.594602 CAAGCATATGCCCACCGATG 59.405 55.000 23.96 8.24 43.38 3.84
3237 11319 0.183492 ACAAGCATATGCCCACCGAT 59.817 50.000 23.96 0.36 43.38 4.18
3238 11320 0.747644 CACAAGCATATGCCCACCGA 60.748 55.000 23.96 0.00 43.38 4.69
3239 11321 1.729276 CACAAGCATATGCCCACCG 59.271 57.895 23.96 10.46 43.38 4.94
3240 11322 1.438814 GCACAAGCATATGCCCACC 59.561 57.895 23.96 5.72 43.38 4.61
3257 11339 5.279384 CCAAAATCTTCTACTGCATGATGC 58.721 41.667 11.12 11.12 45.29 3.91
3258 11340 5.279384 GCCAAAATCTTCTACTGCATGATG 58.721 41.667 0.00 0.00 0.00 3.07
3259 11341 4.036027 CGCCAAAATCTTCTACTGCATGAT 59.964 41.667 0.00 0.00 0.00 2.45
3260 11342 3.374988 CGCCAAAATCTTCTACTGCATGA 59.625 43.478 0.00 0.00 0.00 3.07
3261 11343 3.488047 CCGCCAAAATCTTCTACTGCATG 60.488 47.826 0.00 0.00 0.00 4.06
3262 11344 2.684881 CCGCCAAAATCTTCTACTGCAT 59.315 45.455 0.00 0.00 0.00 3.96
3263 11345 2.083774 CCGCCAAAATCTTCTACTGCA 58.916 47.619 0.00 0.00 0.00 4.41
3264 11346 2.356135 TCCGCCAAAATCTTCTACTGC 58.644 47.619 0.00 0.00 0.00 4.40
3265 11347 5.371115 TTTTCCGCCAAAATCTTCTACTG 57.629 39.130 0.00 0.00 0.00 2.74
3266 11348 5.710099 TCATTTTCCGCCAAAATCTTCTACT 59.290 36.000 1.42 0.00 41.94 2.57
3267 11349 5.800438 GTCATTTTCCGCCAAAATCTTCTAC 59.200 40.000 1.42 0.00 41.94 2.59
3268 11350 5.105917 GGTCATTTTCCGCCAAAATCTTCTA 60.106 40.000 1.42 0.00 41.94 2.10
3269 11351 4.321974 GGTCATTTTCCGCCAAAATCTTCT 60.322 41.667 1.42 0.00 41.94 2.85
3270 11352 3.926527 GGTCATTTTCCGCCAAAATCTTC 59.073 43.478 1.42 0.00 41.94 2.87
3271 11353 3.306710 GGGTCATTTTCCGCCAAAATCTT 60.307 43.478 1.42 0.00 41.94 2.40
3272 11354 2.233676 GGGTCATTTTCCGCCAAAATCT 59.766 45.455 1.42 0.00 41.94 2.40
3273 11355 2.233676 AGGGTCATTTTCCGCCAAAATC 59.766 45.455 1.42 0.00 41.94 2.17
3274 11356 2.233676 GAGGGTCATTTTCCGCCAAAAT 59.766 45.455 0.00 0.00 44.25 1.82
3275 11357 1.616374 GAGGGTCATTTTCCGCCAAAA 59.384 47.619 0.00 0.00 38.38 2.44
3276 11358 1.253100 GAGGGTCATTTTCCGCCAAA 58.747 50.000 0.00 0.00 0.00 3.28
3277 11359 0.610785 GGAGGGTCATTTTCCGCCAA 60.611 55.000 0.00 0.00 41.74 4.52
3278 11360 1.001393 GGAGGGTCATTTTCCGCCA 60.001 57.895 0.00 0.00 41.74 5.69
3279 11361 0.323451 AAGGAGGGTCATTTTCCGCC 60.323 55.000 0.00 0.00 42.34 6.13
3280 11362 2.014857 GTAAGGAGGGTCATTTTCCGC 58.985 52.381 0.00 0.00 36.11 5.54
3281 11363 2.026636 TGGTAAGGAGGGTCATTTTCCG 60.027 50.000 0.00 0.00 36.11 4.30
3282 11364 3.732048 TGGTAAGGAGGGTCATTTTCC 57.268 47.619 0.00 0.00 0.00 3.13
3283 11365 4.918588 TCTTGGTAAGGAGGGTCATTTTC 58.081 43.478 0.00 0.00 0.00 2.29
3284 11366 5.077564 GTTCTTGGTAAGGAGGGTCATTTT 58.922 41.667 0.00 0.00 0.00 1.82
3285 11367 4.105697 TGTTCTTGGTAAGGAGGGTCATTT 59.894 41.667 0.00 0.00 0.00 2.32
3286 11368 3.655777 TGTTCTTGGTAAGGAGGGTCATT 59.344 43.478 0.00 0.00 0.00 2.57
3287 11369 3.256704 TGTTCTTGGTAAGGAGGGTCAT 58.743 45.455 0.00 0.00 0.00 3.06
3288 11370 2.696775 TGTTCTTGGTAAGGAGGGTCA 58.303 47.619 0.00 0.00 0.00 4.02
3289 11371 3.782656 TTGTTCTTGGTAAGGAGGGTC 57.217 47.619 0.00 0.00 0.00 4.46
3290 11372 3.203487 TGTTTGTTCTTGGTAAGGAGGGT 59.797 43.478 0.00 0.00 0.00 4.34
3291 11373 3.827722 TGTTTGTTCTTGGTAAGGAGGG 58.172 45.455 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.