Multiple sequence alignment - TraesCS2D01G064600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G064600 chr2D 100.000 3064 0 0 1 3064 27763985 27760922 0.000000e+00 5659.0
1 TraesCS2D01G064600 chr2D 91.533 1122 75 13 967 2082 27758458 27759565 0.000000e+00 1528.0
2 TraesCS2D01G064600 chr2D 88.123 682 57 18 972 1645 114548503 114547838 0.000000e+00 789.0
3 TraesCS2D01G064600 chr2D 86.321 424 46 9 1766 2187 114547700 114547287 4.660000e-123 451.0
4 TraesCS2D01G064600 chr2D 94.472 199 10 1 2847 3045 69256454 69256651 3.840000e-79 305.0
5 TraesCS2D01G064600 chr2D 96.104 77 3 0 841 917 27763094 27763018 3.210000e-25 126.0
6 TraesCS2D01G064600 chr2D 96.104 77 3 0 892 968 27763145 27763069 3.210000e-25 126.0
7 TraesCS2D01G064600 chr2D 80.503 159 23 6 2335 2485 372927122 372926964 6.940000e-22 115.0
8 TraesCS2D01G064600 chr2A 89.467 1614 119 33 974 2547 29878378 29876776 0.000000e+00 1991.0
9 TraesCS2D01G064600 chr2A 88.792 1142 73 22 967 2081 29871282 29872395 0.000000e+00 1349.0
10 TraesCS2D01G064600 chr2A 94.419 645 25 4 175 815 29879036 29878399 0.000000e+00 981.0
11 TraesCS2D01G064600 chr2A 88.693 681 63 14 972 1645 116001144 116000471 0.000000e+00 819.0
12 TraesCS2D01G064600 chr2A 87.324 426 42 9 1766 2189 116000333 115999918 7.690000e-131 477.0
13 TraesCS2D01G064600 chr2A 88.013 317 31 4 1081 1395 29836376 29836687 4.830000e-98 368.0
14 TraesCS2D01G064600 chr2A 92.473 93 7 0 1 93 29879164 29879072 1.920000e-27 134.0
15 TraesCS2D01G064600 chr2B 94.622 1283 55 8 971 2250 43630854 43629583 0.000000e+00 1975.0
16 TraesCS2D01G064600 chr2B 91.431 1132 72 15 967 2081 43614822 43615945 0.000000e+00 1530.0
17 TraesCS2D01G064600 chr2B 89.443 682 57 14 972 1645 165112201 165111527 0.000000e+00 846.0
18 TraesCS2D01G064600 chr2B 87.879 693 64 13 121 808 43631560 43630883 0.000000e+00 797.0
19 TraesCS2D01G064600 chr2B 86.321 424 39 13 1766 2187 165111389 165110983 7.800000e-121 444.0
20 TraesCS2D01G064600 chr2B 91.549 213 18 0 2829 3041 397531815 397531603 8.310000e-76 294.0
21 TraesCS2D01G064600 chr2B 81.633 147 13 7 2356 2488 620639300 620639446 3.230000e-20 110.0
22 TraesCS2D01G064600 chr2B 78.313 166 23 6 2337 2489 135092365 135092530 9.040000e-16 95.3
23 TraesCS2D01G064600 chr2B 88.889 45 4 1 2797 2840 43616807 43616763 2.000000e-03 54.7
24 TraesCS2D01G064600 chr5D 97.129 209 6 0 2829 3037 555355961 555356169 1.350000e-93 353.0
25 TraesCS2D01G064600 chr5D 94.521 73 3 1 2713 2785 6181275 6181204 8.980000e-21 111.0
26 TraesCS2D01G064600 chr4A 95.349 215 10 0 2829 3043 719118267 719118481 2.930000e-90 342.0
27 TraesCS2D01G064600 chr4A 79.907 214 41 2 2829 3041 284000652 284000864 4.090000e-34 156.0
28 TraesCS2D01G064600 chr4A 81.928 166 17 5 2333 2485 176016667 176016832 8.920000e-26 128.0
29 TraesCS2D01G064600 chr4A 86.364 66 8 1 2423 2487 436357548 436357613 1.520000e-08 71.3
30 TraesCS2D01G064600 chr7B 88.889 189 15 2 1104 1291 684403985 684404168 8.550000e-56 228.0
31 TraesCS2D01G064600 chr7B 86.294 197 20 4 1104 1299 684401570 684401760 1.110000e-49 207.0
32 TraesCS2D01G064600 chr7B 83.333 162 14 5 2337 2485 647129019 647128858 1.480000e-28 137.0
33 TraesCS2D01G064600 chr7B 80.838 167 17 4 2337 2488 708108316 708108150 1.930000e-22 117.0
34 TraesCS2D01G064600 chr7A 85.276 163 10 3 2337 2486 206712118 206711957 4.090000e-34 156.0
35 TraesCS2D01G064600 chr7A 95.890 73 2 1 2713 2785 109219559 109219488 1.930000e-22 117.0
36 TraesCS2D01G064600 chr7A 95.890 73 2 1 2713 2785 167576313 167576384 1.930000e-22 117.0
37 TraesCS2D01G064600 chr4D 83.735 166 24 3 2877 3041 119363988 119364151 1.470000e-33 154.0
38 TraesCS2D01G064600 chr3B 83.735 166 13 3 2334 2485 253630478 253630643 8.850000e-31 145.0
39 TraesCS2D01G064600 chr3B 82.209 163 13 7 2337 2485 425776007 425775847 3.210000e-25 126.0
40 TraesCS2D01G064600 chr3B 95.890 73 2 1 2713 2785 101919374 101919303 1.930000e-22 117.0
41 TraesCS2D01G064600 chr3B 82.517 143 11 5 2358 2486 313579484 313579626 2.500000e-21 113.0
42 TraesCS2D01G064600 chr4B 83.030 165 14 3 2337 2487 82024213 82024049 1.480000e-28 137.0
43 TraesCS2D01G064600 chr4B 79.630 162 18 9 2333 2483 562639171 562639328 5.400000e-18 102.0
44 TraesCS2D01G064600 chr3D 82.609 161 16 5 2337 2485 434133866 434134026 6.890000e-27 132.0
45 TraesCS2D01G064600 chr3D 81.707 164 15 5 2332 2481 606601348 606601510 4.150000e-24 122.0
46 TraesCS2D01G064600 chr3D 86.538 52 6 1 2441 2491 105231374 105231323 4.270000e-04 56.5
47 TraesCS2D01G064600 chr7D 82.036 167 16 4 2337 2489 562937993 562937827 2.480000e-26 130.0
48 TraesCS2D01G064600 chr7D 81.325 166 18 4 2334 2486 588088070 588088235 4.150000e-24 122.0
49 TraesCS2D01G064600 chr7D 75.294 170 29 11 2336 2493 619638296 619638464 5.480000e-08 69.4
50 TraesCS2D01G064600 chr6B 81.437 167 17 5 2337 2489 647696254 647696088 1.150000e-24 124.0
51 TraesCS2D01G064600 chr5B 95.890 73 2 1 2713 2785 13832939 13832868 1.930000e-22 117.0
52 TraesCS2D01G064600 chr5B 77.848 158 29 4 2337 2489 545802191 545802347 3.250000e-15 93.5
53 TraesCS2D01G064600 chr5B 92.982 57 3 1 2440 2495 526730952 526731008 7.040000e-12 82.4
54 TraesCS2D01G064600 chr1A 95.890 73 2 1 2713 2785 554455876 554455947 1.930000e-22 117.0
55 TraesCS2D01G064600 chr1A 95.890 73 2 1 2713 2785 554457270 554457199 1.930000e-22 117.0
56 TraesCS2D01G064600 chr1A 95.890 73 2 1 2713 2785 554458138 554458209 1.930000e-22 117.0
57 TraesCS2D01G064600 chr1D 94.521 73 3 1 2713 2785 260891778 260891849 8.980000e-21 111.0
58 TraesCS2D01G064600 chr6A 92.453 53 4 0 2434 2486 559344264 559344316 3.280000e-10 76.8
59 TraesCS2D01G064600 chr3A 84.507 71 7 3 2426 2493 555696072 555696003 1.970000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G064600 chr2D 27760922 27763985 3063 True 1970.333333 5659 97.402667 1 3064 3 chr2D.!!$R2 3063
1 TraesCS2D01G064600 chr2D 27758458 27759565 1107 False 1528.000000 1528 91.533000 967 2082 1 chr2D.!!$F1 1115
2 TraesCS2D01G064600 chr2D 114547287 114548503 1216 True 620.000000 789 87.222000 972 2187 2 chr2D.!!$R3 1215
3 TraesCS2D01G064600 chr2A 29871282 29872395 1113 False 1349.000000 1349 88.792000 967 2081 1 chr2A.!!$F2 1114
4 TraesCS2D01G064600 chr2A 29876776 29879164 2388 True 1035.333333 1991 92.119667 1 2547 3 chr2A.!!$R1 2546
5 TraesCS2D01G064600 chr2A 115999918 116001144 1226 True 648.000000 819 88.008500 972 2189 2 chr2A.!!$R2 1217
6 TraesCS2D01G064600 chr2B 43614822 43615945 1123 False 1530.000000 1530 91.431000 967 2081 1 chr2B.!!$F1 1114
7 TraesCS2D01G064600 chr2B 43629583 43631560 1977 True 1386.000000 1975 91.250500 121 2250 2 chr2B.!!$R3 2129
8 TraesCS2D01G064600 chr2B 165110983 165112201 1218 True 645.000000 846 87.882000 972 2187 2 chr2B.!!$R4 1215
9 TraesCS2D01G064600 chr7B 684401570 684404168 2598 False 217.500000 228 87.591500 1104 1299 2 chr7B.!!$F1 195

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 0.107831 TTTGTCTGGACTTCGGTGGG 59.892 55.000 2.38 0.0 0.0 4.61 F
119 120 2.047179 GTCTGGACTTCGGTGGGC 60.047 66.667 0.00 0.0 0.0 5.36 F
1859 4363 0.103937 CTCCCAAGATCCAGCGTCTC 59.896 60.000 0.00 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1859 4363 1.592223 GAGGGTCAAGGGAGTCACG 59.408 63.158 0.00 0.0 0.00 4.35 R
1952 4456 1.803366 GCCTCTGTGCAAGCAGCTTT 61.803 55.000 4.38 0.0 45.94 3.51 R
2986 5505 0.026285 AACGAACGCAGCATAATCGC 59.974 50.000 0.00 0.0 37.03 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.546029 TGAGTGTTCCTCATCTCCACG 59.454 52.381 0.00 0.00 45.34 4.94
33 34 1.519455 CATCTCCACGTTCGCCCTC 60.519 63.158 0.00 0.00 0.00 4.30
40 41 1.025812 CACGTTCGCCCTCTAGATCT 58.974 55.000 0.00 0.00 0.00 2.75
54 55 0.817654 AGATCTGCGTCGTGGAATCA 59.182 50.000 0.00 0.00 0.00 2.57
93 94 3.139850 TGGGAAATCGCGTTTCTGTTTA 58.860 40.909 23.54 10.51 44.54 2.01
94 95 3.187637 TGGGAAATCGCGTTTCTGTTTAG 59.812 43.478 23.54 0.00 44.54 1.85
95 96 3.187842 GGGAAATCGCGTTTCTGTTTAGT 59.812 43.478 23.54 1.35 44.54 2.24
96 97 4.148891 GGAAATCGCGTTTCTGTTTAGTG 58.851 43.478 23.54 0.00 44.54 2.74
97 98 4.319261 GGAAATCGCGTTTCTGTTTAGTGT 60.319 41.667 23.54 0.14 44.54 3.55
98 99 5.107375 GGAAATCGCGTTTCTGTTTAGTGTA 60.107 40.000 23.54 0.00 44.54 2.90
99 100 6.401796 GGAAATCGCGTTTCTGTTTAGTGTAT 60.402 38.462 23.54 0.00 44.54 2.29
100 101 6.476243 AATCGCGTTTCTGTTTAGTGTATT 57.524 33.333 5.77 0.00 0.00 1.89
101 102 5.910637 TCGCGTTTCTGTTTAGTGTATTT 57.089 34.783 5.77 0.00 0.00 1.40
102 103 5.672051 TCGCGTTTCTGTTTAGTGTATTTG 58.328 37.500 5.77 0.00 0.00 2.32
103 104 5.234757 TCGCGTTTCTGTTTAGTGTATTTGT 59.765 36.000 5.77 0.00 0.00 2.83
104 105 5.558888 CGCGTTTCTGTTTAGTGTATTTGTC 59.441 40.000 0.00 0.00 0.00 3.18
105 106 6.563381 CGCGTTTCTGTTTAGTGTATTTGTCT 60.563 38.462 0.00 0.00 0.00 3.41
106 107 6.573725 GCGTTTCTGTTTAGTGTATTTGTCTG 59.426 38.462 0.00 0.00 0.00 3.51
107 108 7.069569 CGTTTCTGTTTAGTGTATTTGTCTGG 58.930 38.462 0.00 0.00 0.00 3.86
112 113 7.656137 TCTGTTTAGTGTATTTGTCTGGACTTC 59.344 37.037 2.38 0.00 0.00 3.01
113 114 6.422701 TGTTTAGTGTATTTGTCTGGACTTCG 59.577 38.462 2.38 0.00 0.00 3.79
118 119 0.107831 TTTGTCTGGACTTCGGTGGG 59.892 55.000 2.38 0.00 0.00 4.61
119 120 2.047179 GTCTGGACTTCGGTGGGC 60.047 66.667 0.00 0.00 0.00 5.36
160 161 5.073311 TGTGCATCTAGTCCTGTTACTTC 57.927 43.478 0.00 0.00 0.00 3.01
197 198 6.773200 TGGCGTGGAACCATTATTTATGATTA 59.227 34.615 0.00 0.00 36.26 1.75
244 245 5.918608 AGTGTTATGGTGCGATTAGAATCT 58.081 37.500 1.04 0.00 33.24 2.40
262 263 7.281040 AGAATCTTGTTGAAGCTTTTGATGA 57.719 32.000 0.00 0.00 0.00 2.92
293 294 6.382608 GGACTGGAATTAAAGTTCTTTGAGC 58.617 40.000 7.90 0.00 0.00 4.26
297 298 4.853743 GGAATTAAAGTTCTTTGAGCGCTG 59.146 41.667 18.48 0.00 0.00 5.18
354 356 9.976511 ATCAAGGATGTTTGCTATATTTTCATG 57.023 29.630 0.00 0.00 0.00 3.07
379 381 6.939132 TCAAATGTGGTTTCAAATTGCATT 57.061 29.167 0.00 0.00 31.54 3.56
383 385 5.273674 TGTGGTTTCAAATTGCATTGAGA 57.726 34.783 3.16 0.00 40.21 3.27
392 394 7.451501 TCAAATTGCATTGAGAACACTATGA 57.548 32.000 0.00 0.00 34.50 2.15
531 533 5.010708 ACCCTTCCCACATTCTTAACAAT 57.989 39.130 0.00 0.00 0.00 2.71
537 539 7.761249 CCTTCCCACATTCTTAACAATTTGATC 59.239 37.037 2.79 0.00 0.00 2.92
551 553 3.940209 TTTGATCAACAGTGAATGGCC 57.060 42.857 7.89 0.00 37.30 5.36
577 579 8.791327 TCAAATATCTTTTGATGCTCAGTACA 57.209 30.769 0.00 0.00 39.88 2.90
668 673 6.515272 ACTGCTTCAAAAATATGACGGATT 57.485 33.333 0.00 0.00 0.00 3.01
765 771 4.823442 TGATATCACCATAAGCAGGCTTTG 59.177 41.667 12.27 9.83 37.47 2.77
785 794 5.692115 TTGAGTGGGCTAATGATCAGTAA 57.308 39.130 4.22 0.00 0.00 2.24
856 865 5.705609 AGTGGACAATGTATTTTGTGGAC 57.294 39.130 0.00 0.00 39.85 4.02
857 866 5.136828 AGTGGACAATGTATTTTGTGGACA 58.863 37.500 0.00 0.00 39.85 4.02
858 867 5.596361 AGTGGACAATGTATTTTGTGGACAA 59.404 36.000 0.00 0.00 39.85 3.18
859 868 6.267471 AGTGGACAATGTATTTTGTGGACAAT 59.733 34.615 0.00 0.00 39.85 2.71
860 869 6.365789 GTGGACAATGTATTTTGTGGACAATG 59.634 38.462 0.00 0.00 39.85 2.82
861 870 5.348451 GGACAATGTATTTTGTGGACAATGC 59.652 40.000 0.00 0.00 39.85 3.56
862 871 6.100404 ACAATGTATTTTGTGGACAATGCT 57.900 33.333 0.00 0.00 38.37 3.79
863 872 5.927689 ACAATGTATTTTGTGGACAATGCTG 59.072 36.000 0.00 0.00 38.37 4.41
864 873 5.726980 ATGTATTTTGTGGACAATGCTGT 57.273 34.783 0.00 0.00 38.98 4.40
867 876 5.982516 TGTATTTTGTGGACAATGCTGTTTC 59.017 36.000 0.00 0.00 35.30 2.78
870 879 4.829064 TTGTGGACAATGCTGTTTCTAC 57.171 40.909 0.00 0.00 35.30 2.59
874 883 5.359576 TGTGGACAATGCTGTTTCTACTTTT 59.640 36.000 0.00 0.00 35.30 2.27
879 888 9.162764 GGACAATGCTGTTTCTACTTTTCTATA 57.837 33.333 0.00 0.00 35.30 1.31
913 922 6.839124 TCAATTTATCTTGTGGACAATGCT 57.161 33.333 0.00 0.00 35.02 3.79
914 923 6.623486 TCAATTTATCTTGTGGACAATGCTG 58.377 36.000 0.00 0.00 35.02 4.41
915 924 6.209192 TCAATTTATCTTGTGGACAATGCTGT 59.791 34.615 0.00 0.00 38.98 4.40
916 925 6.594788 ATTTATCTTGTGGACAATGCTGTT 57.405 33.333 0.00 0.00 35.30 3.16
917 926 6.403866 TTTATCTTGTGGACAATGCTGTTT 57.596 33.333 0.00 0.00 35.30 2.83
918 927 3.988379 TCTTGTGGACAATGCTGTTTC 57.012 42.857 0.00 0.00 35.30 2.78
919 928 3.554934 TCTTGTGGACAATGCTGTTTCT 58.445 40.909 0.00 0.00 35.30 2.52
920 929 4.713553 TCTTGTGGACAATGCTGTTTCTA 58.286 39.130 0.00 0.00 35.30 2.10
921 930 4.515191 TCTTGTGGACAATGCTGTTTCTAC 59.485 41.667 0.00 0.00 35.30 2.59
922 931 4.085357 TGTGGACAATGCTGTTTCTACT 57.915 40.909 0.00 0.00 35.30 2.57
923 932 4.460263 TGTGGACAATGCTGTTTCTACTT 58.540 39.130 0.00 0.00 35.30 2.24
924 933 4.887071 TGTGGACAATGCTGTTTCTACTTT 59.113 37.500 0.00 0.00 35.30 2.66
925 934 5.359576 TGTGGACAATGCTGTTTCTACTTTT 59.640 36.000 0.00 0.00 35.30 2.27
926 935 5.915196 GTGGACAATGCTGTTTCTACTTTTC 59.085 40.000 0.00 0.00 35.30 2.29
927 936 5.827797 TGGACAATGCTGTTTCTACTTTTCT 59.172 36.000 0.00 0.00 35.30 2.52
928 937 6.995686 TGGACAATGCTGTTTCTACTTTTCTA 59.004 34.615 0.00 0.00 35.30 2.10
929 938 7.665559 TGGACAATGCTGTTTCTACTTTTCTAT 59.334 33.333 0.00 0.00 35.30 1.98
930 939 9.162764 GGACAATGCTGTTTCTACTTTTCTATA 57.837 33.333 0.00 0.00 35.30 1.31
963 972 5.565592 TCAATGTATCTTGTGGACAATGC 57.434 39.130 0.00 0.00 35.02 3.56
964 973 5.255687 TCAATGTATCTTGTGGACAATGCT 58.744 37.500 0.00 0.00 35.02 3.79
965 974 5.124297 TCAATGTATCTTGTGGACAATGCTG 59.876 40.000 0.00 0.00 35.02 4.41
1119 3563 4.265073 ACATAACCCTTCAGCTGATGTTC 58.735 43.478 19.04 0.00 0.00 3.18
1301 3748 8.934023 AACTTTATTTCCATGGTACTTCTGAA 57.066 30.769 12.58 0.00 0.00 3.02
1303 3750 9.533831 ACTTTATTTCCATGGTACTTCTGAATT 57.466 29.630 12.58 0.00 0.00 2.17
1308 3759 7.864108 TTCCATGGTACTTCTGAATTACATG 57.136 36.000 12.58 15.81 0.00 3.21
1313 3764 8.729756 CATGGTACTTCTGAATTACATGTTTCA 58.270 33.333 16.55 8.27 0.00 2.69
1326 3780 9.903682 AATTACATGTTTCACTCTTGAATCAAG 57.096 29.630 16.39 16.39 42.20 3.02
1341 3795 4.997395 TGAATCAAGCTCTTACCTGTGTTC 59.003 41.667 0.00 0.00 0.00 3.18
1687 4143 6.072783 GCATTAGCTCTATTCTTGTTCCATCC 60.073 42.308 0.00 0.00 37.91 3.51
1748 4223 7.482654 TCTCAAGGAAAATTATCATACTGCG 57.517 36.000 0.00 0.00 0.00 5.18
1795 4299 9.978044 TCTTGTTTACTTCTTTCTTACCTAGAC 57.022 33.333 0.00 0.00 30.90 2.59
1796 4300 9.205719 CTTGTTTACTTCTTTCTTACCTAGACC 57.794 37.037 0.00 0.00 30.90 3.85
1797 4301 7.373493 TGTTTACTTCTTTCTTACCTAGACCG 58.627 38.462 0.00 0.00 30.90 4.79
1798 4302 7.014615 TGTTTACTTCTTTCTTACCTAGACCGT 59.985 37.037 0.00 0.00 30.90 4.83
1799 4303 8.515414 GTTTACTTCTTTCTTACCTAGACCGTA 58.485 37.037 0.00 0.00 30.90 4.02
1802 4306 5.998454 TCTTTCTTACCTAGACCGTATCG 57.002 43.478 0.00 0.00 30.90 2.92
1859 4363 0.103937 CTCCCAAGATCCAGCGTCTC 59.896 60.000 0.00 0.00 0.00 3.36
1952 4456 0.610174 CAGAGGCTGCAGAGTACCAA 59.390 55.000 20.43 0.00 0.00 3.67
2167 4671 4.328536 TGCGTGAACATGGGTACTTTATT 58.671 39.130 0.00 0.00 0.00 1.40
2171 4675 5.410132 CGTGAACATGGGTACTTTATTGTCA 59.590 40.000 0.00 0.00 0.00 3.58
2203 4707 1.003696 ACTGGAGTAGCTTTCTTGGGC 59.996 52.381 0.00 0.00 0.00 5.36
2316 4820 2.708216 TCGGCCATTTAATCTGCTCA 57.292 45.000 2.24 0.00 0.00 4.26
2345 4849 5.975988 TTTTGCTCCATATTACTCCCTCT 57.024 39.130 0.00 0.00 0.00 3.69
2349 4853 4.721776 TGCTCCATATTACTCCCTCTGTTT 59.278 41.667 0.00 0.00 0.00 2.83
2364 4868 9.974980 CTCCCTCTGTTTCTAAATATAAGTCTC 57.025 37.037 0.00 0.00 0.00 3.36
2418 4924 9.645059 CGGATGTATATAGATTCATTTGAGTGT 57.355 33.333 0.00 0.00 0.00 3.55
2435 4954 4.449743 TGAGTGTTTTTGCTCCGTATGTAC 59.550 41.667 0.00 0.00 0.00 2.90
2438 4957 3.998341 TGTTTTTGCTCCGTATGTACTCC 59.002 43.478 0.00 0.00 0.00 3.85
2439 4958 3.965379 TTTTGCTCCGTATGTACTCCA 57.035 42.857 0.00 0.00 0.00 3.86
2441 4960 5.601583 TTTTGCTCCGTATGTACTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
2442 4961 4.848562 TTGCTCCGTATGTACTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
2446 4965 4.277672 GCTCCGTATGTACTCCATAGTGAA 59.722 45.833 0.00 0.00 36.71 3.18
2456 4975 8.226819 TGTACTCCATAGTGAAATCTCTACAG 57.773 38.462 0.00 0.00 36.36 2.74
2476 4995 8.696374 TCTACAGAGACTTACATTTAGGAATGG 58.304 37.037 4.39 0.00 45.56 3.16
2488 5007 7.290813 ACATTTAGGAATGGAGGGAGTATTTC 58.709 38.462 4.39 0.00 45.56 2.17
2495 5014 7.131069 AGGAATGGAGGGAGTATTTCCTAATTT 59.869 37.037 0.32 0.00 45.98 1.82
2499 5018 7.812306 TGGAGGGAGTATTTCCTAATTTAAGG 58.188 38.462 0.00 0.00 45.98 2.69
2500 5019 6.715718 GGAGGGAGTATTTCCTAATTTAAGGC 59.284 42.308 0.00 0.00 45.98 4.35
2504 5023 7.230913 GGGAGTATTTCCTAATTTAAGGCCTTC 59.769 40.741 24.49 1.65 45.98 3.46
2506 5025 9.185680 GAGTATTTCCTAATTTAAGGCCTTCAA 57.814 33.333 24.49 18.85 36.51 2.69
2523 5042 6.039829 GGCCTTCAAGAATATTAACCTTGAGG 59.960 42.308 15.22 15.22 44.57 3.86
2547 5066 8.919145 AGGTTAATTTTGATGGTTGACTTGTTA 58.081 29.630 0.00 0.00 0.00 2.41
2548 5067 9.535878 GGTTAATTTTGATGGTTGACTTGTTAA 57.464 29.630 0.00 0.00 0.00 2.01
2552 5071 9.883142 AATTTTGATGGTTGACTTGTTAAAAGA 57.117 25.926 0.00 0.00 0.00 2.52
2553 5072 9.883142 ATTTTGATGGTTGACTTGTTAAAAGAA 57.117 25.926 0.00 0.00 0.00 2.52
2554 5073 9.712305 TTTTGATGGTTGACTTGTTAAAAGAAA 57.288 25.926 0.00 0.00 0.00 2.52
2555 5074 9.883142 TTTGATGGTTGACTTGTTAAAAGAAAT 57.117 25.926 0.00 0.00 0.00 2.17
2565 5084 9.922305 GACTTGTTAAAAGAAATATGATCGAGG 57.078 33.333 0.00 0.00 0.00 4.63
2566 5085 9.667107 ACTTGTTAAAAGAAATATGATCGAGGA 57.333 29.630 0.00 0.00 0.00 3.71
2568 5087 8.662781 TGTTAAAAGAAATATGATCGAGGAGG 57.337 34.615 0.00 0.00 0.00 4.30
2569 5088 8.482943 TGTTAAAAGAAATATGATCGAGGAGGA 58.517 33.333 0.00 0.00 0.00 3.71
2570 5089 8.983724 GTTAAAAGAAATATGATCGAGGAGGAG 58.016 37.037 0.00 0.00 0.00 3.69
2571 5090 5.736951 AAGAAATATGATCGAGGAGGAGG 57.263 43.478 0.00 0.00 0.00 4.30
2572 5091 4.746466 AGAAATATGATCGAGGAGGAGGT 58.254 43.478 0.00 0.00 0.00 3.85
2573 5092 4.526262 AGAAATATGATCGAGGAGGAGGTG 59.474 45.833 0.00 0.00 0.00 4.00
2574 5093 3.816398 ATATGATCGAGGAGGAGGTGA 57.184 47.619 0.00 0.00 0.00 4.02
2575 5094 1.993956 ATGATCGAGGAGGAGGTGAG 58.006 55.000 0.00 0.00 0.00 3.51
2576 5095 0.753479 TGATCGAGGAGGAGGTGAGC 60.753 60.000 0.00 0.00 0.00 4.26
2577 5096 0.753479 GATCGAGGAGGAGGTGAGCA 60.753 60.000 0.00 0.00 0.00 4.26
2578 5097 0.754957 ATCGAGGAGGAGGTGAGCAG 60.755 60.000 0.00 0.00 0.00 4.24
2579 5098 1.680651 CGAGGAGGAGGTGAGCAGT 60.681 63.158 0.00 0.00 0.00 4.40
2580 5099 1.662438 CGAGGAGGAGGTGAGCAGTC 61.662 65.000 0.00 0.00 0.00 3.51
2581 5100 0.613292 GAGGAGGAGGTGAGCAGTCA 60.613 60.000 0.00 0.00 0.00 3.41
2582 5101 0.042431 AGGAGGAGGTGAGCAGTCAT 59.958 55.000 0.00 0.00 34.36 3.06
2583 5102 0.908198 GGAGGAGGTGAGCAGTCATT 59.092 55.000 0.00 0.00 34.36 2.57
2584 5103 1.280421 GGAGGAGGTGAGCAGTCATTT 59.720 52.381 0.00 0.00 34.36 2.32
2585 5104 2.501723 GGAGGAGGTGAGCAGTCATTTA 59.498 50.000 0.00 0.00 34.36 1.40
2586 5105 3.055094 GGAGGAGGTGAGCAGTCATTTAA 60.055 47.826 0.00 0.00 34.36 1.52
2587 5106 4.565652 GGAGGAGGTGAGCAGTCATTTAAA 60.566 45.833 0.00 0.00 34.36 1.52
2588 5107 4.985538 AGGAGGTGAGCAGTCATTTAAAA 58.014 39.130 0.00 0.00 34.36 1.52
2589 5108 5.385198 AGGAGGTGAGCAGTCATTTAAAAA 58.615 37.500 0.00 0.00 34.36 1.94
2611 5130 8.642908 AAAAAGAATCACCTTTTCGGTTTTAG 57.357 30.769 0.00 0.00 46.37 1.85
2612 5131 5.372547 AGAATCACCTTTTCGGTTTTAGC 57.627 39.130 0.00 0.00 46.37 3.09
2613 5132 4.825085 AGAATCACCTTTTCGGTTTTAGCA 59.175 37.500 0.00 0.00 46.37 3.49
2614 5133 5.476945 AGAATCACCTTTTCGGTTTTAGCAT 59.523 36.000 0.00 0.00 46.37 3.79
2615 5134 5.722021 ATCACCTTTTCGGTTTTAGCATT 57.278 34.783 0.00 0.00 46.37 3.56
2616 5135 5.523438 TCACCTTTTCGGTTTTAGCATTT 57.477 34.783 0.00 0.00 46.37 2.32
2617 5136 5.285651 TCACCTTTTCGGTTTTAGCATTTG 58.714 37.500 0.00 0.00 46.37 2.32
2618 5137 5.067936 TCACCTTTTCGGTTTTAGCATTTGA 59.932 36.000 0.00 0.00 46.37 2.69
2619 5138 5.925969 CACCTTTTCGGTTTTAGCATTTGAT 59.074 36.000 0.00 0.00 46.37 2.57
2620 5139 5.925969 ACCTTTTCGGTTTTAGCATTTGATG 59.074 36.000 0.00 0.00 46.37 3.07
2621 5140 5.925969 CCTTTTCGGTTTTAGCATTTGATGT 59.074 36.000 0.00 0.00 0.00 3.06
2622 5141 6.128849 CCTTTTCGGTTTTAGCATTTGATGTG 60.129 38.462 0.00 0.00 0.00 3.21
2623 5142 3.832276 TCGGTTTTAGCATTTGATGTGC 58.168 40.909 0.00 0.00 42.81 4.57
2624 5143 3.254411 TCGGTTTTAGCATTTGATGTGCA 59.746 39.130 0.69 0.00 44.87 4.57
2625 5144 4.082300 TCGGTTTTAGCATTTGATGTGCAT 60.082 37.500 0.00 0.00 44.87 3.96
2626 5145 4.626604 CGGTTTTAGCATTTGATGTGCATT 59.373 37.500 0.00 0.00 44.87 3.56
2627 5146 5.804473 CGGTTTTAGCATTTGATGTGCATTA 59.196 36.000 0.00 0.00 44.87 1.90
2628 5147 6.309980 CGGTTTTAGCATTTGATGTGCATTAA 59.690 34.615 0.00 0.00 44.87 1.40
2629 5148 7.010367 CGGTTTTAGCATTTGATGTGCATTAAT 59.990 33.333 0.00 0.00 44.87 1.40
2630 5149 8.667463 GGTTTTAGCATTTGATGTGCATTAATT 58.333 29.630 0.00 0.00 44.87 1.40
2634 5153 9.656040 TTAGCATTTGATGTGCATTAATTTTCT 57.344 25.926 0.00 0.00 44.87 2.52
2635 5154 8.556213 AGCATTTGATGTGCATTAATTTTCTT 57.444 26.923 0.00 0.00 44.87 2.52
2636 5155 9.656040 AGCATTTGATGTGCATTAATTTTCTTA 57.344 25.926 0.00 0.00 44.87 2.10
2637 5156 9.693157 GCATTTGATGTGCATTAATTTTCTTAC 57.307 29.630 0.00 0.00 42.08 2.34
2679 5198 2.633860 CTTGTGACTCAAGTGGGGC 58.366 57.895 8.75 0.00 45.89 5.80
2680 5199 0.109342 CTTGTGACTCAAGTGGGGCT 59.891 55.000 8.75 0.00 45.89 5.19
2681 5200 1.347707 CTTGTGACTCAAGTGGGGCTA 59.652 52.381 8.75 0.00 45.89 3.93
2682 5201 1.429930 TGTGACTCAAGTGGGGCTAA 58.570 50.000 0.00 0.00 0.00 3.09
2683 5202 1.985159 TGTGACTCAAGTGGGGCTAAT 59.015 47.619 0.00 0.00 0.00 1.73
2684 5203 2.375174 TGTGACTCAAGTGGGGCTAATT 59.625 45.455 0.00 0.00 0.00 1.40
2685 5204 3.181434 TGTGACTCAAGTGGGGCTAATTT 60.181 43.478 0.00 0.00 0.00 1.82
2686 5205 3.826729 GTGACTCAAGTGGGGCTAATTTT 59.173 43.478 0.00 0.00 0.00 1.82
2687 5206 3.826157 TGACTCAAGTGGGGCTAATTTTG 59.174 43.478 0.00 0.00 0.00 2.44
2688 5207 2.562738 ACTCAAGTGGGGCTAATTTTGC 59.437 45.455 0.00 0.00 0.00 3.68
2739 5258 8.964476 TCTCTTTCATAAACTTTTGTCTCTGT 57.036 30.769 0.00 0.00 0.00 3.41
2742 5261 8.761497 TCTTTCATAAACTTTTGTCTCTGTACG 58.239 33.333 0.00 0.00 0.00 3.67
2743 5262 7.416154 TTCATAAACTTTTGTCTCTGTACGG 57.584 36.000 0.00 0.00 0.00 4.02
2744 5263 6.751157 TCATAAACTTTTGTCTCTGTACGGA 58.249 36.000 3.91 3.91 0.00 4.69
2745 5264 6.866770 TCATAAACTTTTGTCTCTGTACGGAG 59.133 38.462 23.54 23.54 34.88 4.63
2747 5266 5.779529 AACTTTTGTCTCTGTACGGAGTA 57.220 39.130 27.11 16.70 45.11 2.59
2763 5282 6.010294 ACGGAGTACTATATGATTTCACCG 57.990 41.667 9.02 9.02 41.94 4.94
2764 5283 5.533903 ACGGAGTACTATATGATTTCACCGT 59.466 40.000 10.12 10.12 41.94 4.83
2765 5284 6.040166 ACGGAGTACTATATGATTTCACCGTT 59.960 38.462 10.12 0.00 44.67 4.44
2766 5285 6.921857 CGGAGTACTATATGATTTCACCGTTT 59.078 38.462 0.00 0.00 0.00 3.60
2767 5286 7.096189 CGGAGTACTATATGATTTCACCGTTTG 60.096 40.741 0.00 0.00 0.00 2.93
2768 5287 7.709613 GGAGTACTATATGATTTCACCGTTTGT 59.290 37.037 0.00 0.00 0.00 2.83
2769 5288 9.095065 GAGTACTATATGATTTCACCGTTTGTT 57.905 33.333 0.00 0.00 0.00 2.83
2770 5289 9.444600 AGTACTATATGATTTCACCGTTTGTTT 57.555 29.630 0.00 0.00 0.00 2.83
2771 5290 9.698617 GTACTATATGATTTCACCGTTTGTTTC 57.301 33.333 0.00 0.00 0.00 2.78
2772 5291 8.330466 ACTATATGATTTCACCGTTTGTTTCA 57.670 30.769 0.00 0.00 0.00 2.69
2773 5292 8.956426 ACTATATGATTTCACCGTTTGTTTCAT 58.044 29.630 0.00 0.00 0.00 2.57
2774 5293 9.438291 CTATATGATTTCACCGTTTGTTTCATC 57.562 33.333 0.00 0.00 0.00 2.92
2775 5294 5.506686 TGATTTCACCGTTTGTTTCATCA 57.493 34.783 0.00 0.00 0.00 3.07
2776 5295 5.518812 TGATTTCACCGTTTGTTTCATCAG 58.481 37.500 0.00 0.00 0.00 2.90
2777 5296 5.298026 TGATTTCACCGTTTGTTTCATCAGA 59.702 36.000 0.00 0.00 0.00 3.27
2778 5297 5.568685 TTTCACCGTTTGTTTCATCAGAA 57.431 34.783 0.00 0.00 0.00 3.02
2779 5298 5.568685 TTCACCGTTTGTTTCATCAGAAA 57.431 34.783 0.00 0.00 41.26 2.52
2792 5311 6.729690 TTCATCAGAAACAATCCAAAACCT 57.270 33.333 0.00 0.00 0.00 3.50
2793 5312 6.088016 TCATCAGAAACAATCCAAAACCTG 57.912 37.500 0.00 0.00 0.00 4.00
2794 5313 4.320608 TCAGAAACAATCCAAAACCTGC 57.679 40.909 0.00 0.00 0.00 4.85
2795 5314 3.960102 TCAGAAACAATCCAAAACCTGCT 59.040 39.130 0.00 0.00 0.00 4.24
2796 5315 4.053295 CAGAAACAATCCAAAACCTGCTG 58.947 43.478 0.00 0.00 0.00 4.41
2797 5316 3.706086 AGAAACAATCCAAAACCTGCTGT 59.294 39.130 0.00 0.00 0.00 4.40
2798 5317 4.892934 AGAAACAATCCAAAACCTGCTGTA 59.107 37.500 0.00 0.00 0.00 2.74
2799 5318 5.539955 AGAAACAATCCAAAACCTGCTGTAT 59.460 36.000 0.00 0.00 0.00 2.29
2800 5319 5.806654 AACAATCCAAAACCTGCTGTATT 57.193 34.783 0.00 0.00 0.00 1.89
2801 5320 5.806654 ACAATCCAAAACCTGCTGTATTT 57.193 34.783 0.00 0.00 0.00 1.40
2802 5321 5.783111 ACAATCCAAAACCTGCTGTATTTC 58.217 37.500 0.00 0.00 0.00 2.17
2803 5322 5.539955 ACAATCCAAAACCTGCTGTATTTCT 59.460 36.000 0.00 0.00 0.00 2.52
2804 5323 5.649782 ATCCAAAACCTGCTGTATTTCTG 57.350 39.130 0.00 0.00 0.00 3.02
2805 5324 3.826157 TCCAAAACCTGCTGTATTTCTGG 59.174 43.478 0.00 0.25 0.00 3.86
2806 5325 3.573967 CCAAAACCTGCTGTATTTCTGGT 59.426 43.478 0.00 0.00 36.30 4.00
2807 5326 4.039124 CCAAAACCTGCTGTATTTCTGGTT 59.961 41.667 0.00 0.00 43.39 3.67
2808 5327 4.853924 AAACCTGCTGTATTTCTGGTTG 57.146 40.909 0.00 0.00 41.59 3.77
2809 5328 2.162681 ACCTGCTGTATTTCTGGTTGC 58.837 47.619 0.00 0.00 31.65 4.17
2810 5329 1.474077 CCTGCTGTATTTCTGGTTGCC 59.526 52.381 0.00 0.00 0.00 4.52
2811 5330 2.440409 CTGCTGTATTTCTGGTTGCCT 58.560 47.619 0.00 0.00 0.00 4.75
2812 5331 2.821969 CTGCTGTATTTCTGGTTGCCTT 59.178 45.455 0.00 0.00 0.00 4.35
2813 5332 4.009675 CTGCTGTATTTCTGGTTGCCTTA 58.990 43.478 0.00 0.00 0.00 2.69
2814 5333 4.009675 TGCTGTATTTCTGGTTGCCTTAG 58.990 43.478 0.00 0.00 0.00 2.18
2815 5334 4.261801 GCTGTATTTCTGGTTGCCTTAGA 58.738 43.478 0.00 0.00 0.00 2.10
2816 5335 4.333926 GCTGTATTTCTGGTTGCCTTAGAG 59.666 45.833 0.00 0.00 0.00 2.43
2817 5336 4.261801 TGTATTTCTGGTTGCCTTAGAGC 58.738 43.478 0.00 0.00 0.00 4.09
2818 5337 2.949177 TTTCTGGTTGCCTTAGAGCA 57.051 45.000 0.00 0.00 42.17 4.26
2819 5338 2.479566 TTCTGGTTGCCTTAGAGCAG 57.520 50.000 0.00 0.00 45.13 4.24
2820 5339 1.644509 TCTGGTTGCCTTAGAGCAGA 58.355 50.000 1.54 1.54 45.13 4.26
2821 5340 1.276421 TCTGGTTGCCTTAGAGCAGAC 59.724 52.381 1.54 0.71 45.13 3.51
2822 5341 1.277557 CTGGTTGCCTTAGAGCAGACT 59.722 52.381 0.00 0.00 45.13 3.24
2823 5342 2.497675 CTGGTTGCCTTAGAGCAGACTA 59.502 50.000 0.00 0.00 45.13 2.59
2824 5343 2.903784 TGGTTGCCTTAGAGCAGACTAA 59.096 45.455 0.00 0.00 45.13 2.24
2825 5344 3.326588 TGGTTGCCTTAGAGCAGACTAAA 59.673 43.478 0.00 0.00 45.13 1.85
2826 5345 3.685272 GGTTGCCTTAGAGCAGACTAAAC 59.315 47.826 0.00 0.00 45.13 2.01
2827 5346 4.315803 GTTGCCTTAGAGCAGACTAAACA 58.684 43.478 0.00 0.00 45.13 2.83
2828 5347 4.826274 TGCCTTAGAGCAGACTAAACAT 57.174 40.909 0.00 0.00 38.00 2.71
2829 5348 4.507710 TGCCTTAGAGCAGACTAAACATG 58.492 43.478 0.00 0.00 38.00 3.21
2830 5349 3.311048 GCCTTAGAGCAGACTAAACATGC 59.689 47.826 0.00 0.00 40.29 4.06
2838 5357 4.748892 GCAGACTAAACATGCTAGACTGA 58.251 43.478 25.33 0.00 39.81 3.41
2839 5358 5.171476 GCAGACTAAACATGCTAGACTGAA 58.829 41.667 25.33 0.00 39.81 3.02
2840 5359 5.814705 GCAGACTAAACATGCTAGACTGAAT 59.185 40.000 25.33 1.74 39.81 2.57
2841 5360 6.314896 GCAGACTAAACATGCTAGACTGAATT 59.685 38.462 25.33 0.00 39.81 2.17
2842 5361 7.148340 GCAGACTAAACATGCTAGACTGAATTT 60.148 37.037 25.33 7.23 39.81 1.82
2843 5362 8.725148 CAGACTAAACATGCTAGACTGAATTTT 58.275 33.333 20.50 3.06 39.81 1.82
2844 5363 9.289782 AGACTAAACATGCTAGACTGAATTTTT 57.710 29.630 8.95 0.00 0.00 1.94
2845 5364 9.548208 GACTAAACATGCTAGACTGAATTTTTC 57.452 33.333 8.95 0.00 0.00 2.29
2846 5365 9.289782 ACTAAACATGCTAGACTGAATTTTTCT 57.710 29.630 8.95 0.00 0.00 2.52
2849 5368 7.150783 ACATGCTAGACTGAATTTTTCTTCC 57.849 36.000 0.00 0.00 0.00 3.46
2850 5369 6.944862 ACATGCTAGACTGAATTTTTCTTCCT 59.055 34.615 0.00 0.00 0.00 3.36
2851 5370 7.449704 ACATGCTAGACTGAATTTTTCTTCCTT 59.550 33.333 0.00 0.00 0.00 3.36
2852 5371 7.823745 TGCTAGACTGAATTTTTCTTCCTTT 57.176 32.000 0.00 0.00 0.00 3.11
2853 5372 8.237811 TGCTAGACTGAATTTTTCTTCCTTTT 57.762 30.769 0.00 0.00 0.00 2.27
2854 5373 8.352942 TGCTAGACTGAATTTTTCTTCCTTTTC 58.647 33.333 0.00 0.00 0.00 2.29
2855 5374 8.572185 GCTAGACTGAATTTTTCTTCCTTTTCT 58.428 33.333 0.00 0.00 0.00 2.52
2856 5375 9.890352 CTAGACTGAATTTTTCTTCCTTTTCTG 57.110 33.333 0.00 0.00 0.00 3.02
2857 5376 8.298729 AGACTGAATTTTTCTTCCTTTTCTGT 57.701 30.769 0.00 0.00 0.00 3.41
2858 5377 8.753133 AGACTGAATTTTTCTTCCTTTTCTGTT 58.247 29.630 0.00 0.00 0.00 3.16
2859 5378 8.707938 ACTGAATTTTTCTTCCTTTTCTGTTG 57.292 30.769 0.00 0.00 0.00 3.33
2860 5379 8.314021 ACTGAATTTTTCTTCCTTTTCTGTTGT 58.686 29.630 0.00 0.00 0.00 3.32
2861 5380 8.477984 TGAATTTTTCTTCCTTTTCTGTTGTG 57.522 30.769 0.00 0.00 0.00 3.33
2862 5381 8.093927 TGAATTTTTCTTCCTTTTCTGTTGTGT 58.906 29.630 0.00 0.00 0.00 3.72
2863 5382 9.581099 GAATTTTTCTTCCTTTTCTGTTGTGTA 57.419 29.630 0.00 0.00 0.00 2.90
2864 5383 8.926715 ATTTTTCTTCCTTTTCTGTTGTGTAC 57.073 30.769 0.00 0.00 0.00 2.90
2865 5384 7.696992 TTTTCTTCCTTTTCTGTTGTGTACT 57.303 32.000 0.00 0.00 0.00 2.73
2866 5385 6.677781 TTCTTCCTTTTCTGTTGTGTACTG 57.322 37.500 0.00 0.00 0.00 2.74
2867 5386 4.574828 TCTTCCTTTTCTGTTGTGTACTGC 59.425 41.667 0.00 0.00 0.00 4.40
2868 5387 3.211045 TCCTTTTCTGTTGTGTACTGCC 58.789 45.455 0.00 0.00 0.00 4.85
2869 5388 2.293399 CCTTTTCTGTTGTGTACTGCCC 59.707 50.000 0.00 0.00 0.00 5.36
2870 5389 2.719531 TTTCTGTTGTGTACTGCCCA 57.280 45.000 0.00 0.00 0.00 5.36
2871 5390 2.719531 TTCTGTTGTGTACTGCCCAA 57.280 45.000 0.00 0.00 0.00 4.12
2872 5391 2.254546 TCTGTTGTGTACTGCCCAAG 57.745 50.000 0.00 0.00 0.00 3.61
2873 5392 1.765904 TCTGTTGTGTACTGCCCAAGA 59.234 47.619 0.00 0.00 0.00 3.02
2874 5393 1.873591 CTGTTGTGTACTGCCCAAGAC 59.126 52.381 0.00 0.00 0.00 3.01
2875 5394 1.488812 TGTTGTGTACTGCCCAAGACT 59.511 47.619 0.00 0.00 0.00 3.24
2876 5395 2.092646 TGTTGTGTACTGCCCAAGACTT 60.093 45.455 0.00 0.00 0.00 3.01
2877 5396 2.949644 GTTGTGTACTGCCCAAGACTTT 59.050 45.455 0.00 0.00 0.00 2.66
2878 5397 2.571212 TGTGTACTGCCCAAGACTTTG 58.429 47.619 0.00 0.00 0.00 2.77
2879 5398 2.092646 TGTGTACTGCCCAAGACTTTGT 60.093 45.455 0.00 0.00 32.21 2.83
2880 5399 3.134985 TGTGTACTGCCCAAGACTTTGTA 59.865 43.478 0.00 0.00 32.21 2.41
2881 5400 4.131596 GTGTACTGCCCAAGACTTTGTAA 58.868 43.478 0.00 0.00 32.21 2.41
2882 5401 4.760204 GTGTACTGCCCAAGACTTTGTAAT 59.240 41.667 0.00 0.00 32.21 1.89
2883 5402 5.935789 GTGTACTGCCCAAGACTTTGTAATA 59.064 40.000 0.00 0.00 32.21 0.98
2884 5403 6.428771 GTGTACTGCCCAAGACTTTGTAATAA 59.571 38.462 0.00 0.00 32.21 1.40
2885 5404 6.653320 TGTACTGCCCAAGACTTTGTAATAAG 59.347 38.462 0.00 0.00 32.21 1.73
2886 5405 5.010282 ACTGCCCAAGACTTTGTAATAAGG 58.990 41.667 0.00 0.00 32.21 2.69
2887 5406 4.993028 TGCCCAAGACTTTGTAATAAGGT 58.007 39.130 0.00 0.00 32.21 3.50
2888 5407 6.129414 TGCCCAAGACTTTGTAATAAGGTA 57.871 37.500 0.00 0.00 32.21 3.08
2889 5408 6.177610 TGCCCAAGACTTTGTAATAAGGTAG 58.822 40.000 0.00 0.00 32.21 3.18
2890 5409 5.066117 GCCCAAGACTTTGTAATAAGGTAGC 59.934 44.000 0.00 0.00 32.21 3.58
2891 5410 6.415573 CCCAAGACTTTGTAATAAGGTAGCT 58.584 40.000 0.00 0.00 32.21 3.32
2892 5411 6.316390 CCCAAGACTTTGTAATAAGGTAGCTG 59.684 42.308 0.00 0.00 32.21 4.24
2893 5412 7.103641 CCAAGACTTTGTAATAAGGTAGCTGA 58.896 38.462 0.00 0.00 32.21 4.26
2894 5413 7.064728 CCAAGACTTTGTAATAAGGTAGCTGAC 59.935 40.741 0.00 0.00 32.21 3.51
2895 5414 6.331061 AGACTTTGTAATAAGGTAGCTGACG 58.669 40.000 0.00 0.00 0.00 4.35
2896 5415 4.868734 ACTTTGTAATAAGGTAGCTGACGC 59.131 41.667 0.00 0.00 0.00 5.19
2897 5416 3.447918 TGTAATAAGGTAGCTGACGCC 57.552 47.619 0.00 0.00 36.60 5.68
2898 5417 2.101917 TGTAATAAGGTAGCTGACGCCC 59.898 50.000 0.00 0.00 36.60 6.13
2899 5418 1.497161 AATAAGGTAGCTGACGCCCT 58.503 50.000 0.00 0.00 36.60 5.19
2900 5419 1.041437 ATAAGGTAGCTGACGCCCTC 58.959 55.000 0.00 0.00 36.60 4.30
2901 5420 1.381928 TAAGGTAGCTGACGCCCTCG 61.382 60.000 0.00 0.00 42.43 4.63
2902 5421 4.874977 GGTAGCTGACGCCCTCGC 62.875 72.222 0.00 0.00 39.84 5.03
2919 5438 3.342627 CGGCGTTCGGTGCAAAGA 61.343 61.111 0.00 0.00 34.75 2.52
2920 5439 2.677003 CGGCGTTCGGTGCAAAGAT 61.677 57.895 0.00 0.00 34.75 2.40
2921 5440 1.154225 GGCGTTCGGTGCAAAGATG 60.154 57.895 0.00 0.00 0.00 2.90
2922 5441 1.154225 GCGTTCGGTGCAAAGATGG 60.154 57.895 0.00 0.00 0.00 3.51
2923 5442 1.573829 GCGTTCGGTGCAAAGATGGA 61.574 55.000 0.00 0.00 0.00 3.41
2924 5443 1.086696 CGTTCGGTGCAAAGATGGAT 58.913 50.000 0.00 0.00 0.00 3.41
2925 5444 1.202065 CGTTCGGTGCAAAGATGGATG 60.202 52.381 0.00 0.00 0.00 3.51
2926 5445 0.810648 TTCGGTGCAAAGATGGATGC 59.189 50.000 0.00 0.00 42.86 3.91
2927 5446 0.035152 TCGGTGCAAAGATGGATGCT 60.035 50.000 0.00 0.00 42.97 3.79
2928 5447 1.209261 TCGGTGCAAAGATGGATGCTA 59.791 47.619 0.00 0.00 42.97 3.49
2929 5448 2.016318 CGGTGCAAAGATGGATGCTAA 58.984 47.619 0.00 0.00 42.97 3.09
2930 5449 2.620115 CGGTGCAAAGATGGATGCTAAT 59.380 45.455 0.00 0.00 42.97 1.73
2931 5450 3.304257 CGGTGCAAAGATGGATGCTAATC 60.304 47.826 0.00 0.00 42.97 1.75
2939 5458 3.042481 GGATGCTAATCCCCAAGCC 57.958 57.895 0.00 0.00 46.03 4.35
2940 5459 0.890996 GGATGCTAATCCCCAAGCCG 60.891 60.000 0.00 0.00 46.03 5.52
2941 5460 0.179018 GATGCTAATCCCCAAGCCGT 60.179 55.000 0.00 0.00 37.97 5.68
2942 5461 1.071699 GATGCTAATCCCCAAGCCGTA 59.928 52.381 0.00 0.00 37.97 4.02
2943 5462 1.136828 TGCTAATCCCCAAGCCGTAT 58.863 50.000 0.00 0.00 37.97 3.06
2944 5463 1.202758 TGCTAATCCCCAAGCCGTATG 60.203 52.381 0.00 0.00 37.97 2.39
2945 5464 1.882352 GCTAATCCCCAAGCCGTATGG 60.882 57.143 0.00 0.00 37.71 2.74
2965 5484 3.400054 GGGTGGCGCTCCTACCTT 61.400 66.667 7.64 0.00 35.33 3.50
2966 5485 2.669240 GGTGGCGCTCCTACCTTT 59.331 61.111 7.64 0.00 33.48 3.11
2967 5486 1.745489 GGTGGCGCTCCTACCTTTG 60.745 63.158 7.64 0.00 33.48 2.77
2968 5487 1.003718 GTGGCGCTCCTACCTTTGT 60.004 57.895 7.64 0.00 0.00 2.83
2969 5488 0.248289 GTGGCGCTCCTACCTTTGTA 59.752 55.000 7.64 0.00 0.00 2.41
2970 5489 0.248289 TGGCGCTCCTACCTTTGTAC 59.752 55.000 7.64 0.00 0.00 2.90
2971 5490 0.248289 GGCGCTCCTACCTTTGTACA 59.752 55.000 7.64 0.00 0.00 2.90
2972 5491 1.641577 GCGCTCCTACCTTTGTACAG 58.358 55.000 0.00 0.00 0.00 2.74
2973 5492 1.739371 GCGCTCCTACCTTTGTACAGG 60.739 57.143 0.00 0.00 40.23 4.00
2974 5493 1.822990 CGCTCCTACCTTTGTACAGGA 59.177 52.381 8.09 3.86 37.39 3.86
2975 5494 2.431057 CGCTCCTACCTTTGTACAGGAT 59.569 50.000 8.09 0.00 37.39 3.24
2976 5495 3.118738 CGCTCCTACCTTTGTACAGGATT 60.119 47.826 8.09 0.00 37.39 3.01
2977 5496 4.623171 CGCTCCTACCTTTGTACAGGATTT 60.623 45.833 8.09 0.00 37.39 2.17
2978 5497 4.636206 GCTCCTACCTTTGTACAGGATTTG 59.364 45.833 8.09 0.00 37.39 2.32
2979 5498 5.174037 TCCTACCTTTGTACAGGATTTGG 57.826 43.478 8.09 3.44 37.39 3.28
2980 5499 4.600111 TCCTACCTTTGTACAGGATTTGGT 59.400 41.667 8.09 8.04 37.39 3.67
2981 5500 4.700213 CCTACCTTTGTACAGGATTTGGTG 59.300 45.833 8.09 2.58 37.39 4.17
2982 5501 3.496331 ACCTTTGTACAGGATTTGGTGG 58.504 45.455 8.09 0.00 37.39 4.61
2983 5502 2.231235 CCTTTGTACAGGATTTGGTGGC 59.769 50.000 0.00 0.00 35.71 5.01
2984 5503 1.917872 TTGTACAGGATTTGGTGGCC 58.082 50.000 0.00 0.00 0.00 5.36
2985 5504 0.774276 TGTACAGGATTTGGTGGCCA 59.226 50.000 0.00 0.00 0.00 5.36
2986 5505 1.271871 TGTACAGGATTTGGTGGCCAG 60.272 52.381 5.11 0.00 33.81 4.85
2987 5506 0.323360 TACAGGATTTGGTGGCCAGC 60.323 55.000 28.15 28.15 33.81 4.85
2988 5507 2.361610 AGGATTTGGTGGCCAGCG 60.362 61.111 28.67 0.00 33.81 5.18
2989 5508 2.361104 GGATTTGGTGGCCAGCGA 60.361 61.111 28.67 25.17 33.81 4.93
2990 5509 1.754234 GGATTTGGTGGCCAGCGAT 60.754 57.895 28.67 23.86 33.81 4.58
2991 5510 1.322538 GGATTTGGTGGCCAGCGATT 61.323 55.000 28.67 22.84 33.81 3.34
2992 5511 1.388547 GATTTGGTGGCCAGCGATTA 58.611 50.000 28.67 14.42 33.81 1.75
2993 5512 1.956477 GATTTGGTGGCCAGCGATTAT 59.044 47.619 28.67 18.52 33.81 1.28
2994 5513 1.102154 TTTGGTGGCCAGCGATTATG 58.898 50.000 28.67 0.00 33.81 1.90
2995 5514 1.383456 TTGGTGGCCAGCGATTATGC 61.383 55.000 28.67 2.84 33.81 3.14
3003 5522 1.927210 AGCGATTATGCTGCGTTCG 59.073 52.632 10.69 10.69 45.28 3.95
3004 5523 0.806102 AGCGATTATGCTGCGTTCGT 60.806 50.000 15.04 2.80 45.28 3.85
3005 5524 0.026285 GCGATTATGCTGCGTTCGTT 59.974 50.000 15.04 0.00 32.65 3.85
3006 5525 1.718504 CGATTATGCTGCGTTCGTTG 58.281 50.000 0.00 0.00 0.00 4.10
3007 5526 1.592110 CGATTATGCTGCGTTCGTTGG 60.592 52.381 0.00 0.00 0.00 3.77
3008 5527 1.396996 GATTATGCTGCGTTCGTTGGT 59.603 47.619 0.00 0.00 0.00 3.67
3009 5528 1.231221 TTATGCTGCGTTCGTTGGTT 58.769 45.000 0.00 0.00 0.00 3.67
3010 5529 2.081725 TATGCTGCGTTCGTTGGTTA 57.918 45.000 0.00 0.00 0.00 2.85
3011 5530 1.231221 ATGCTGCGTTCGTTGGTTAA 58.769 45.000 0.00 0.00 0.00 2.01
3012 5531 1.231221 TGCTGCGTTCGTTGGTTAAT 58.769 45.000 0.00 0.00 0.00 1.40
3013 5532 1.069568 TGCTGCGTTCGTTGGTTAATG 60.070 47.619 0.00 0.00 0.00 1.90
3014 5533 1.727857 GCTGCGTTCGTTGGTTAATGG 60.728 52.381 0.00 0.00 0.00 3.16
3015 5534 1.801771 CTGCGTTCGTTGGTTAATGGA 59.198 47.619 0.00 0.00 0.00 3.41
3016 5535 2.219458 TGCGTTCGTTGGTTAATGGAA 58.781 42.857 0.00 0.00 0.00 3.53
3017 5536 2.814919 TGCGTTCGTTGGTTAATGGAAT 59.185 40.909 0.00 0.00 0.00 3.01
3018 5537 4.001652 TGCGTTCGTTGGTTAATGGAATA 58.998 39.130 0.00 0.00 0.00 1.75
3019 5538 4.454847 TGCGTTCGTTGGTTAATGGAATAA 59.545 37.500 0.00 0.00 0.00 1.40
3020 5539 5.048921 TGCGTTCGTTGGTTAATGGAATAAA 60.049 36.000 0.00 0.00 0.00 1.40
3021 5540 6.031471 GCGTTCGTTGGTTAATGGAATAAAT 58.969 36.000 0.00 0.00 0.00 1.40
3022 5541 7.148289 TGCGTTCGTTGGTTAATGGAATAAATA 60.148 33.333 0.00 0.00 0.00 1.40
3023 5542 7.858879 GCGTTCGTTGGTTAATGGAATAAATAT 59.141 33.333 0.00 0.00 0.00 1.28
3024 5543 9.165014 CGTTCGTTGGTTAATGGAATAAATATG 57.835 33.333 0.00 0.00 0.00 1.78
3059 5578 2.368655 AAAACATGCAAGGGAATCGC 57.631 45.000 0.00 0.00 0.00 4.58
3060 5579 1.255882 AAACATGCAAGGGAATCGCA 58.744 45.000 0.00 0.00 40.50 5.10
3061 5580 1.255882 AACATGCAAGGGAATCGCAA 58.744 45.000 0.00 0.00 39.48 4.85
3062 5581 0.527565 ACATGCAAGGGAATCGCAAC 59.472 50.000 0.00 0.00 39.48 4.17
3063 5582 0.527113 CATGCAAGGGAATCGCAACA 59.473 50.000 0.00 0.00 39.48 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.519455 GGCGAACGTGGAGATGAGG 60.519 63.158 0.00 0.00 0.00 3.86
21 22 1.025812 AGATCTAGAGGGCGAACGTG 58.974 55.000 0.00 0.00 0.00 4.49
22 23 1.025812 CAGATCTAGAGGGCGAACGT 58.974 55.000 0.00 0.00 0.00 3.99
24 25 3.579066 GCAGATCTAGAGGGCGAAC 57.421 57.895 0.00 0.00 0.00 3.95
33 34 2.033424 TGATTCCACGACGCAGATCTAG 59.967 50.000 0.00 0.00 0.00 2.43
40 41 2.737830 TGGTGATTCCACGACGCA 59.262 55.556 0.00 0.00 44.09 5.24
54 55 2.696707 CCCAATAGCAATCAAGCATGGT 59.303 45.455 0.00 0.00 34.92 3.55
93 94 3.323979 ACCGAAGTCCAGACAAATACACT 59.676 43.478 0.00 0.00 0.00 3.55
94 95 3.432252 CACCGAAGTCCAGACAAATACAC 59.568 47.826 0.00 0.00 0.00 2.90
95 96 3.556213 CCACCGAAGTCCAGACAAATACA 60.556 47.826 0.00 0.00 0.00 2.29
96 97 3.000727 CCACCGAAGTCCAGACAAATAC 58.999 50.000 0.00 0.00 0.00 1.89
97 98 2.027561 CCCACCGAAGTCCAGACAAATA 60.028 50.000 0.00 0.00 0.00 1.40
98 99 1.271379 CCCACCGAAGTCCAGACAAAT 60.271 52.381 0.00 0.00 0.00 2.32
99 100 0.107831 CCCACCGAAGTCCAGACAAA 59.892 55.000 0.00 0.00 0.00 2.83
100 101 1.752198 CCCACCGAAGTCCAGACAA 59.248 57.895 0.00 0.00 0.00 3.18
101 102 2.879233 GCCCACCGAAGTCCAGACA 61.879 63.158 0.00 0.00 0.00 3.41
102 103 2.047179 GCCCACCGAAGTCCAGAC 60.047 66.667 0.00 0.00 0.00 3.51
103 104 2.203788 AGCCCACCGAAGTCCAGA 60.204 61.111 0.00 0.00 0.00 3.86
104 105 2.266055 GAGCCCACCGAAGTCCAG 59.734 66.667 0.00 0.00 0.00 3.86
105 106 3.691342 CGAGCCCACCGAAGTCCA 61.691 66.667 0.00 0.00 0.00 4.02
106 107 3.692406 ACGAGCCCACCGAAGTCC 61.692 66.667 0.00 0.00 0.00 3.85
107 108 2.430382 TTCACGAGCCCACCGAAGTC 62.430 60.000 0.00 0.00 0.00 3.01
112 113 3.499737 GCATTCACGAGCCCACCG 61.500 66.667 0.00 0.00 0.00 4.94
113 114 2.045926 AGCATTCACGAGCCCACC 60.046 61.111 0.00 0.00 0.00 4.61
118 119 2.285827 AGACTACAGCATTCACGAGC 57.714 50.000 0.00 0.00 0.00 5.03
119 120 3.366121 CACAAGACTACAGCATTCACGAG 59.634 47.826 0.00 0.00 0.00 4.18
160 161 1.081509 CACGCCACCCAATTCAACG 60.082 57.895 0.00 0.00 0.00 4.10
197 198 8.639761 ACTTATAAGAGCGTCCTATTAACACAT 58.360 33.333 19.38 0.00 29.44 3.21
244 245 5.775686 CTCCATCATCAAAAGCTTCAACAA 58.224 37.500 0.00 0.00 0.00 2.83
262 263 3.054361 ACTTTAATTCCAGTCCGCTCCAT 60.054 43.478 0.00 0.00 0.00 3.41
293 294 5.277106 TGTTATAACAACACTGTCAACAGCG 60.277 40.000 15.92 3.39 40.75 5.18
354 356 6.116680 TGCAATTTGAAACCACATTTGAAC 57.883 33.333 0.00 0.00 0.00 3.18
392 394 8.340618 TCTGCAGCTCAAAGTAAGAAAATAAT 57.659 30.769 9.47 0.00 0.00 1.28
457 459 2.540101 GCGCTTGCTAAGTCGAATACAT 59.460 45.455 0.00 0.00 35.07 2.29
531 533 3.499338 AGGCCATTCACTGTTGATCAAA 58.501 40.909 10.35 0.06 0.00 2.69
537 539 3.947910 ATTTGAGGCCATTCACTGTTG 57.052 42.857 5.01 0.00 0.00 3.33
668 673 8.517056 CAGCTAATTTCATTATGTCATGGCATA 58.483 33.333 16.01 16.01 0.00 3.14
745 751 4.080356 ACTCAAAGCCTGCTTATGGTGATA 60.080 41.667 4.57 0.00 34.84 2.15
765 771 8.677148 TTAATTTACTGATCATTAGCCCACTC 57.323 34.615 0.00 0.00 0.00 3.51
830 839 9.120538 GTCCACAAAATACATTGTCCACTATAT 57.879 33.333 0.00 0.00 41.44 0.86
831 840 8.103935 TGTCCACAAAATACATTGTCCACTATA 58.896 33.333 0.00 0.00 41.44 1.31
832 841 6.945435 TGTCCACAAAATACATTGTCCACTAT 59.055 34.615 0.00 0.00 41.44 2.12
833 842 6.299922 TGTCCACAAAATACATTGTCCACTA 58.700 36.000 0.00 0.00 41.44 2.74
834 843 5.136828 TGTCCACAAAATACATTGTCCACT 58.863 37.500 0.00 0.00 41.44 4.00
835 844 5.446143 TGTCCACAAAATACATTGTCCAC 57.554 39.130 0.00 0.00 41.44 4.02
836 845 6.453943 CATTGTCCACAAAATACATTGTCCA 58.546 36.000 0.00 0.00 41.44 4.02
837 846 5.348451 GCATTGTCCACAAAATACATTGTCC 59.652 40.000 0.00 0.00 41.44 4.02
838 847 6.089820 CAGCATTGTCCACAAAATACATTGTC 59.910 38.462 0.00 0.00 41.44 3.18
839 848 5.927689 CAGCATTGTCCACAAAATACATTGT 59.072 36.000 0.00 0.00 44.08 2.71
840 849 5.927689 ACAGCATTGTCCACAAAATACATTG 59.072 36.000 0.00 0.00 39.55 2.82
841 850 6.100404 ACAGCATTGTCCACAAAATACATT 57.900 33.333 0.00 0.00 39.55 2.71
842 851 5.726980 ACAGCATTGTCCACAAAATACAT 57.273 34.783 0.00 0.00 39.55 2.29
843 852 5.528043 AACAGCATTGTCCACAAAATACA 57.472 34.783 0.00 0.00 39.55 2.29
844 853 6.215845 AGAAACAGCATTGTCCACAAAATAC 58.784 36.000 0.00 0.00 39.55 1.89
845 854 6.403866 AGAAACAGCATTGTCCACAAAATA 57.596 33.333 0.00 0.00 39.55 1.40
846 855 5.280654 AGAAACAGCATTGTCCACAAAAT 57.719 34.783 0.00 0.00 39.55 1.82
847 856 4.734398 AGAAACAGCATTGTCCACAAAA 57.266 36.364 0.00 0.00 39.55 2.44
848 857 4.887071 AGTAGAAACAGCATTGTCCACAAA 59.113 37.500 0.00 0.00 39.55 2.83
849 858 4.460263 AGTAGAAACAGCATTGTCCACAA 58.540 39.130 0.00 0.00 36.23 3.33
850 859 4.085357 AGTAGAAACAGCATTGTCCACA 57.915 40.909 0.00 0.00 36.23 4.17
851 860 5.438761 AAAGTAGAAACAGCATTGTCCAC 57.561 39.130 0.00 0.00 36.23 4.02
852 861 5.827797 AGAAAAGTAGAAACAGCATTGTCCA 59.172 36.000 0.00 0.00 36.23 4.02
853 862 6.319141 AGAAAAGTAGAAACAGCATTGTCC 57.681 37.500 0.00 0.00 36.23 4.02
887 896 9.139734 AGCATTGTCCACAAGATAAATTGATAT 57.860 29.630 0.00 0.00 39.47 1.63
888 897 8.407832 CAGCATTGTCCACAAGATAAATTGATA 58.592 33.333 0.00 0.00 39.47 2.15
889 898 7.093640 ACAGCATTGTCCACAAGATAAATTGAT 60.094 33.333 0.00 0.00 39.47 2.57
890 899 6.209192 ACAGCATTGTCCACAAGATAAATTGA 59.791 34.615 0.00 0.00 39.47 2.57
891 900 6.392354 ACAGCATTGTCCACAAGATAAATTG 58.608 36.000 0.00 0.00 39.47 2.32
892 901 6.594788 ACAGCATTGTCCACAAGATAAATT 57.405 33.333 0.00 0.00 39.47 1.82
893 902 6.594788 AACAGCATTGTCCACAAGATAAAT 57.405 33.333 0.00 0.00 39.47 1.40
894 903 6.265196 AGAAACAGCATTGTCCACAAGATAAA 59.735 34.615 0.00 0.00 39.47 1.40
895 904 5.769662 AGAAACAGCATTGTCCACAAGATAA 59.230 36.000 0.00 0.00 39.47 1.75
896 905 5.316167 AGAAACAGCATTGTCCACAAGATA 58.684 37.500 0.00 0.00 39.47 1.98
897 906 4.147321 AGAAACAGCATTGTCCACAAGAT 58.853 39.130 0.00 0.00 39.47 2.40
898 907 3.554934 AGAAACAGCATTGTCCACAAGA 58.445 40.909 0.00 0.00 39.47 3.02
899 908 3.996150 AGAAACAGCATTGTCCACAAG 57.004 42.857 0.00 0.00 39.47 3.16
900 909 4.460263 AGTAGAAACAGCATTGTCCACAA 58.540 39.130 0.00 0.00 36.23 3.33
901 910 4.085357 AGTAGAAACAGCATTGTCCACA 57.915 40.909 0.00 0.00 36.23 4.17
902 911 5.438761 AAAGTAGAAACAGCATTGTCCAC 57.561 39.130 0.00 0.00 36.23 4.02
903 912 5.827797 AGAAAAGTAGAAACAGCATTGTCCA 59.172 36.000 0.00 0.00 36.23 4.02
904 913 6.319141 AGAAAAGTAGAAACAGCATTGTCC 57.681 37.500 0.00 0.00 36.23 4.02
937 946 9.002600 GCATTGTCCACAAGATACATTGATATA 57.997 33.333 0.00 0.00 39.47 0.86
938 947 7.722728 AGCATTGTCCACAAGATACATTGATAT 59.277 33.333 0.00 0.00 39.47 1.63
939 948 7.012610 CAGCATTGTCCACAAGATACATTGATA 59.987 37.037 0.00 0.00 39.47 2.15
940 949 5.889853 AGCATTGTCCACAAGATACATTGAT 59.110 36.000 0.00 0.00 39.47 2.57
941 950 5.124297 CAGCATTGTCCACAAGATACATTGA 59.876 40.000 0.00 0.00 39.47 2.57
942 951 5.106038 ACAGCATTGTCCACAAGATACATTG 60.106 40.000 0.00 0.00 39.47 2.82
943 952 5.012239 ACAGCATTGTCCACAAGATACATT 58.988 37.500 0.00 0.00 39.47 2.71
944 953 4.592942 ACAGCATTGTCCACAAGATACAT 58.407 39.130 0.00 0.00 39.47 2.29
945 954 4.019792 ACAGCATTGTCCACAAGATACA 57.980 40.909 0.00 0.00 39.47 2.29
946 955 4.142600 GGAACAGCATTGTCCACAAGATAC 60.143 45.833 0.00 0.00 39.47 2.24
947 956 4.009675 GGAACAGCATTGTCCACAAGATA 58.990 43.478 0.00 0.00 39.47 1.98
948 957 2.821969 GGAACAGCATTGTCCACAAGAT 59.178 45.455 0.00 0.00 39.47 2.40
949 958 2.229792 GGAACAGCATTGTCCACAAGA 58.770 47.619 0.00 0.00 39.47 3.02
950 959 1.955778 TGGAACAGCATTGTCCACAAG 59.044 47.619 0.00 0.00 39.47 3.16
951 960 2.064434 TGGAACAGCATTGTCCACAA 57.936 45.000 0.00 0.00 36.23 3.33
952 961 3.817187 TGGAACAGCATTGTCCACA 57.183 47.368 0.00 0.00 36.23 4.17
991 1000 4.398044 CCGCCTGTAGTTCATACCAAAATT 59.602 41.667 0.00 0.00 33.01 1.82
1299 3746 9.897744 TTGATTCAAGAGTGAAACATGTAATTC 57.102 29.630 0.00 0.39 46.66 2.17
1301 3748 8.025445 GCTTGATTCAAGAGTGAAACATGTAAT 58.975 33.333 26.72 0.00 46.66 1.89
1303 3750 6.712095 AGCTTGATTCAAGAGTGAAACATGTA 59.288 34.615 26.72 0.00 46.66 2.29
1308 3759 5.938438 AGAGCTTGATTCAAGAGTGAAAC 57.062 39.130 26.72 9.58 46.66 2.78
1313 3764 5.012561 ACAGGTAAGAGCTTGATTCAAGAGT 59.987 40.000 26.72 14.43 43.42 3.24
1326 3780 3.304726 GCAAAAGGAACACAGGTAAGAGC 60.305 47.826 0.00 0.00 0.00 4.09
1341 3795 4.708726 CCTACAGAATTGAGGCAAAAGG 57.291 45.455 0.00 0.00 0.00 3.11
1687 4143 4.676196 GCAAAATAACACAGCAGGATCCAG 60.676 45.833 15.82 7.25 0.00 3.86
1748 4223 5.174395 AGACACACAAATCTGCTCAGATAC 58.826 41.667 12.28 0.00 46.75 2.24
1795 4299 7.686519 TGGAAATAACAAACAATACGATACGG 58.313 34.615 0.00 0.00 0.00 4.02
1796 4300 7.849026 CCTGGAAATAACAAACAATACGATACG 59.151 37.037 0.00 0.00 0.00 3.06
1797 4301 7.642586 GCCTGGAAATAACAAACAATACGATAC 59.357 37.037 0.00 0.00 0.00 2.24
1798 4302 7.337184 TGCCTGGAAATAACAAACAATACGATA 59.663 33.333 0.00 0.00 0.00 2.92
1799 4303 6.151985 TGCCTGGAAATAACAAACAATACGAT 59.848 34.615 0.00 0.00 0.00 3.73
1802 4306 7.375053 TCTTGCCTGGAAATAACAAACAATAC 58.625 34.615 0.00 0.00 0.00 1.89
1859 4363 1.592223 GAGGGTCAAGGGAGTCACG 59.408 63.158 0.00 0.00 0.00 4.35
1889 4393 2.275134 TCTTGTCTGCAATTCTGGCA 57.725 45.000 0.00 0.00 39.32 4.92
1952 4456 1.803366 GCCTCTGTGCAAGCAGCTTT 61.803 55.000 4.38 0.00 45.94 3.51
2167 4671 5.741011 ACTCCAGTAACAAAACTTCTGACA 58.259 37.500 0.00 0.00 0.00 3.58
2171 4675 6.176014 AGCTACTCCAGTAACAAAACTTCT 57.824 37.500 0.00 0.00 0.00 2.85
2203 4707 4.323417 TGGTAAACTGCATCAGGTACAAG 58.677 43.478 0.00 0.00 35.51 3.16
2288 4792 6.459573 GCAGATTAAATGGCCGATAAGACAAA 60.460 38.462 0.00 0.00 0.00 2.83
2290 4794 4.515191 GCAGATTAAATGGCCGATAAGACA 59.485 41.667 0.00 0.00 0.00 3.41
2291 4795 4.757149 AGCAGATTAAATGGCCGATAAGAC 59.243 41.667 0.00 0.00 0.00 3.01
2326 4830 3.928754 ACAGAGGGAGTAATATGGAGCA 58.071 45.455 0.00 0.00 0.00 4.26
2327 4831 4.965200 AACAGAGGGAGTAATATGGAGC 57.035 45.455 0.00 0.00 0.00 4.70
2328 4832 6.739331 AGAAACAGAGGGAGTAATATGGAG 57.261 41.667 0.00 0.00 0.00 3.86
2329 4833 8.618240 TTTAGAAACAGAGGGAGTAATATGGA 57.382 34.615 0.00 0.00 0.00 3.41
2401 4907 8.031277 GGAGCAAAAACACTCAAATGAATCTAT 58.969 33.333 0.00 0.00 34.48 1.98
2407 4913 3.380004 ACGGAGCAAAAACACTCAAATGA 59.620 39.130 0.00 0.00 34.48 2.57
2408 4914 3.705604 ACGGAGCAAAAACACTCAAATG 58.294 40.909 0.00 0.00 34.48 2.32
2413 4919 4.689345 AGTACATACGGAGCAAAAACACTC 59.311 41.667 0.00 0.00 0.00 3.51
2415 4921 4.142966 GGAGTACATACGGAGCAAAAACAC 60.143 45.833 0.00 0.00 0.00 3.32
2416 4922 3.998341 GGAGTACATACGGAGCAAAAACA 59.002 43.478 0.00 0.00 0.00 2.83
2418 4924 4.274602 TGGAGTACATACGGAGCAAAAA 57.725 40.909 0.00 0.00 0.00 1.94
2435 4954 7.815840 TCTCTGTAGAGATTTCACTATGGAG 57.184 40.000 7.49 0.00 45.48 3.86
2454 4973 6.989169 CCTCCATTCCTAAATGTAAGTCTCTG 59.011 42.308 0.00 0.00 40.63 3.35
2456 4975 6.099845 TCCCTCCATTCCTAAATGTAAGTCTC 59.900 42.308 0.00 0.00 40.63 3.36
2461 4980 7.947782 ATACTCCCTCCATTCCTAAATGTAA 57.052 36.000 0.00 0.00 40.63 2.41
2462 4981 7.947782 AATACTCCCTCCATTCCTAAATGTA 57.052 36.000 0.00 0.00 40.63 2.29
2464 4983 6.717084 GGAAATACTCCCTCCATTCCTAAATG 59.283 42.308 0.00 0.00 39.11 2.32
2476 4995 6.715718 GGCCTTAAATTAGGAAATACTCCCTC 59.284 42.308 0.00 0.00 46.81 4.30
2495 5014 8.333235 TCAAGGTTAATATTCTTGAAGGCCTTA 58.667 33.333 20.54 1.80 42.38 2.69
2499 5018 7.032377 CCTCAAGGTTAATATTCTTGAAGGC 57.968 40.000 15.20 0.00 43.94 4.35
2547 5066 6.100424 ACCTCCTCCTCGATCATATTTCTTTT 59.900 38.462 0.00 0.00 0.00 2.27
2548 5067 5.604650 ACCTCCTCCTCGATCATATTTCTTT 59.395 40.000 0.00 0.00 0.00 2.52
2549 5068 5.011533 CACCTCCTCCTCGATCATATTTCTT 59.988 44.000 0.00 0.00 0.00 2.52
2550 5069 4.526262 CACCTCCTCCTCGATCATATTTCT 59.474 45.833 0.00 0.00 0.00 2.52
2551 5070 4.524714 TCACCTCCTCCTCGATCATATTTC 59.475 45.833 0.00 0.00 0.00 2.17
2552 5071 4.483950 TCACCTCCTCCTCGATCATATTT 58.516 43.478 0.00 0.00 0.00 1.40
2553 5072 4.085733 CTCACCTCCTCCTCGATCATATT 58.914 47.826 0.00 0.00 0.00 1.28
2554 5073 3.696045 CTCACCTCCTCCTCGATCATAT 58.304 50.000 0.00 0.00 0.00 1.78
2555 5074 2.815963 GCTCACCTCCTCCTCGATCATA 60.816 54.545 0.00 0.00 0.00 2.15
2556 5075 1.993956 CTCACCTCCTCCTCGATCAT 58.006 55.000 0.00 0.00 0.00 2.45
2557 5076 0.753479 GCTCACCTCCTCCTCGATCA 60.753 60.000 0.00 0.00 0.00 2.92
2558 5077 0.753479 TGCTCACCTCCTCCTCGATC 60.753 60.000 0.00 0.00 0.00 3.69
2559 5078 0.754957 CTGCTCACCTCCTCCTCGAT 60.755 60.000 0.00 0.00 0.00 3.59
2560 5079 1.379176 CTGCTCACCTCCTCCTCGA 60.379 63.158 0.00 0.00 0.00 4.04
2561 5080 1.662438 GACTGCTCACCTCCTCCTCG 61.662 65.000 0.00 0.00 0.00 4.63
2562 5081 0.613292 TGACTGCTCACCTCCTCCTC 60.613 60.000 0.00 0.00 0.00 3.71
2563 5082 0.042431 ATGACTGCTCACCTCCTCCT 59.958 55.000 0.00 0.00 0.00 3.69
2564 5083 0.908198 AATGACTGCTCACCTCCTCC 59.092 55.000 0.00 0.00 0.00 4.30
2565 5084 2.777832 AAATGACTGCTCACCTCCTC 57.222 50.000 0.00 0.00 0.00 3.71
2566 5085 4.640771 TTTAAATGACTGCTCACCTCCT 57.359 40.909 0.00 0.00 0.00 3.69
2567 5086 5.705609 TTTTTAAATGACTGCTCACCTCC 57.294 39.130 0.00 0.00 0.00 4.30
2597 5116 9.400644 GCACATCAAATGCTAAAACCGAAAAGG 62.401 40.741 0.00 0.00 42.25 3.11
2598 5117 6.616260 GCACATCAAATGCTAAAACCGAAAAG 60.616 38.462 0.00 0.00 40.08 2.27
2599 5118 5.176590 GCACATCAAATGCTAAAACCGAAAA 59.823 36.000 0.00 0.00 40.08 2.29
2600 5119 4.683781 GCACATCAAATGCTAAAACCGAAA 59.316 37.500 0.00 0.00 40.08 3.46
2601 5120 4.233789 GCACATCAAATGCTAAAACCGAA 58.766 39.130 0.00 0.00 40.08 4.30
2602 5121 3.254411 TGCACATCAAATGCTAAAACCGA 59.746 39.130 0.00 0.00 43.77 4.69
2603 5122 3.573598 TGCACATCAAATGCTAAAACCG 58.426 40.909 0.00 0.00 43.77 4.44
2604 5123 7.593875 TTAATGCACATCAAATGCTAAAACC 57.406 32.000 0.00 0.00 43.77 3.27
2608 5127 9.656040 AGAAAATTAATGCACATCAAATGCTAA 57.344 25.926 0.00 0.00 43.77 3.09
2609 5128 9.656040 AAGAAAATTAATGCACATCAAATGCTA 57.344 25.926 0.00 0.00 43.77 3.49
2610 5129 8.556213 AAGAAAATTAATGCACATCAAATGCT 57.444 26.923 0.00 0.00 43.77 3.79
2611 5130 9.693157 GTAAGAAAATTAATGCACATCAAATGC 57.307 29.630 0.00 0.00 43.68 3.56
2662 5181 1.429930 TAGCCCCACTTGAGTCACAA 58.570 50.000 0.00 0.00 36.97 3.33
2663 5182 1.429930 TTAGCCCCACTTGAGTCACA 58.570 50.000 0.00 0.00 0.00 3.58
2664 5183 2.789409 ATTAGCCCCACTTGAGTCAC 57.211 50.000 0.00 0.00 0.00 3.67
2665 5184 3.806949 AAATTAGCCCCACTTGAGTCA 57.193 42.857 0.00 0.00 0.00 3.41
2666 5185 3.367395 GCAAAATTAGCCCCACTTGAGTC 60.367 47.826 0.00 0.00 0.00 3.36
2667 5186 2.562738 GCAAAATTAGCCCCACTTGAGT 59.437 45.455 0.00 0.00 0.00 3.41
2668 5187 2.094026 GGCAAAATTAGCCCCACTTGAG 60.094 50.000 10.04 0.00 46.50 3.02
2669 5188 1.899142 GGCAAAATTAGCCCCACTTGA 59.101 47.619 10.04 0.00 46.50 3.02
2670 5189 2.385013 GGCAAAATTAGCCCCACTTG 57.615 50.000 10.04 0.00 46.50 3.16
2713 5232 9.396022 ACAGAGACAAAAGTTTATGAAAGAGAA 57.604 29.630 0.00 0.00 0.00 2.87
2714 5233 8.964476 ACAGAGACAAAAGTTTATGAAAGAGA 57.036 30.769 0.00 0.00 0.00 3.10
2716 5235 8.761497 CGTACAGAGACAAAAGTTTATGAAAGA 58.239 33.333 0.00 0.00 0.00 2.52
2717 5236 8.009974 CCGTACAGAGACAAAAGTTTATGAAAG 58.990 37.037 0.00 0.00 0.00 2.62
2718 5237 7.711772 TCCGTACAGAGACAAAAGTTTATGAAA 59.288 33.333 0.00 0.00 0.00 2.69
2719 5238 7.211573 TCCGTACAGAGACAAAAGTTTATGAA 58.788 34.615 0.00 0.00 0.00 2.57
2720 5239 6.751157 TCCGTACAGAGACAAAAGTTTATGA 58.249 36.000 0.00 0.00 0.00 2.15
2721 5240 6.645415 ACTCCGTACAGAGACAAAAGTTTATG 59.355 38.462 13.11 0.00 37.33 1.90
2722 5241 6.756221 ACTCCGTACAGAGACAAAAGTTTAT 58.244 36.000 13.11 0.00 37.33 1.40
2723 5242 6.152932 ACTCCGTACAGAGACAAAAGTTTA 57.847 37.500 13.11 0.00 37.33 2.01
2724 5243 5.019785 ACTCCGTACAGAGACAAAAGTTT 57.980 39.130 13.11 0.00 37.33 2.66
2725 5244 4.667519 ACTCCGTACAGAGACAAAAGTT 57.332 40.909 13.11 0.00 37.33 2.66
2726 5245 4.826183 AGTACTCCGTACAGAGACAAAAGT 59.174 41.667 13.11 0.00 41.03 2.66
2727 5246 5.373981 AGTACTCCGTACAGAGACAAAAG 57.626 43.478 13.11 0.00 41.03 2.27
2728 5247 8.618677 CATATAGTACTCCGTACAGAGACAAAA 58.381 37.037 13.11 0.00 41.03 2.44
2729 5248 7.989170 TCATATAGTACTCCGTACAGAGACAAA 59.011 37.037 13.11 1.21 41.03 2.83
2730 5249 7.503549 TCATATAGTACTCCGTACAGAGACAA 58.496 38.462 13.11 0.00 41.03 3.18
2731 5250 7.059202 TCATATAGTACTCCGTACAGAGACA 57.941 40.000 13.11 0.00 41.03 3.41
2732 5251 8.550710 AATCATATAGTACTCCGTACAGAGAC 57.449 38.462 13.11 6.80 41.03 3.36
2733 5252 9.217278 GAAATCATATAGTACTCCGTACAGAGA 57.783 37.037 13.11 0.00 41.03 3.10
2734 5253 9.000486 TGAAATCATATAGTACTCCGTACAGAG 58.000 37.037 0.00 4.49 41.03 3.35
2735 5254 8.781196 GTGAAATCATATAGTACTCCGTACAGA 58.219 37.037 0.00 0.00 41.03 3.41
2736 5255 8.021973 GGTGAAATCATATAGTACTCCGTACAG 58.978 40.741 0.00 0.00 41.03 2.74
2737 5256 7.308169 CGGTGAAATCATATAGTACTCCGTACA 60.308 40.741 0.00 0.00 41.03 2.90
2738 5257 7.020010 CGGTGAAATCATATAGTACTCCGTAC 58.980 42.308 0.00 0.00 39.10 3.67
2739 5258 6.712095 ACGGTGAAATCATATAGTACTCCGTA 59.288 38.462 13.27 1.07 41.71 4.02
2740 5259 5.533903 ACGGTGAAATCATATAGTACTCCGT 59.466 40.000 10.12 10.12 39.85 4.69
2741 5260 6.010294 ACGGTGAAATCATATAGTACTCCG 57.990 41.667 0.00 4.05 38.35 4.63
2742 5261 7.709613 ACAAACGGTGAAATCATATAGTACTCC 59.290 37.037 0.00 0.00 0.00 3.85
2743 5262 8.644318 ACAAACGGTGAAATCATATAGTACTC 57.356 34.615 0.00 0.00 0.00 2.59
2744 5263 9.444600 AAACAAACGGTGAAATCATATAGTACT 57.555 29.630 0.00 0.00 0.00 2.73
2745 5264 9.698617 GAAACAAACGGTGAAATCATATAGTAC 57.301 33.333 0.00 0.00 0.00 2.73
2746 5265 9.438228 TGAAACAAACGGTGAAATCATATAGTA 57.562 29.630 0.00 0.00 0.00 1.82
2747 5266 8.330466 TGAAACAAACGGTGAAATCATATAGT 57.670 30.769 0.00 0.00 0.00 2.12
2748 5267 9.438291 GATGAAACAAACGGTGAAATCATATAG 57.562 33.333 0.00 0.00 31.89 1.31
2749 5268 8.951243 TGATGAAACAAACGGTGAAATCATATA 58.049 29.630 0.00 0.00 31.89 0.86
2750 5269 7.825681 TGATGAAACAAACGGTGAAATCATAT 58.174 30.769 0.00 0.00 31.89 1.78
2751 5270 7.174080 TCTGATGAAACAAACGGTGAAATCATA 59.826 33.333 0.00 0.00 31.89 2.15
2752 5271 6.016360 TCTGATGAAACAAACGGTGAAATCAT 60.016 34.615 0.00 0.00 33.30 2.45
2753 5272 5.298026 TCTGATGAAACAAACGGTGAAATCA 59.702 36.000 0.00 0.00 0.00 2.57
2754 5273 5.757886 TCTGATGAAACAAACGGTGAAATC 58.242 37.500 0.00 0.00 0.00 2.17
2755 5274 5.766150 TCTGATGAAACAAACGGTGAAAT 57.234 34.783 0.00 0.00 0.00 2.17
2756 5275 5.568685 TTCTGATGAAACAAACGGTGAAA 57.431 34.783 0.00 0.00 0.00 2.69
2757 5276 5.568685 TTTCTGATGAAACAAACGGTGAA 57.431 34.783 0.00 0.00 37.27 3.18
2768 5287 6.985645 CAGGTTTTGGATTGTTTCTGATGAAA 59.014 34.615 0.00 0.00 39.59 2.69
2769 5288 6.514947 CAGGTTTTGGATTGTTTCTGATGAA 58.485 36.000 0.00 0.00 0.00 2.57
2770 5289 5.509501 GCAGGTTTTGGATTGTTTCTGATGA 60.510 40.000 0.00 0.00 0.00 2.92
2771 5290 4.687483 GCAGGTTTTGGATTGTTTCTGATG 59.313 41.667 0.00 0.00 0.00 3.07
2772 5291 4.590222 AGCAGGTTTTGGATTGTTTCTGAT 59.410 37.500 0.00 0.00 0.00 2.90
2773 5292 3.960102 AGCAGGTTTTGGATTGTTTCTGA 59.040 39.130 0.00 0.00 0.00 3.27
2774 5293 4.053295 CAGCAGGTTTTGGATTGTTTCTG 58.947 43.478 0.00 0.00 0.00 3.02
2775 5294 3.706086 ACAGCAGGTTTTGGATTGTTTCT 59.294 39.130 0.00 0.00 0.00 2.52
2776 5295 4.058721 ACAGCAGGTTTTGGATTGTTTC 57.941 40.909 0.00 0.00 0.00 2.78
2777 5296 5.806654 ATACAGCAGGTTTTGGATTGTTT 57.193 34.783 0.00 0.00 0.00 2.83
2778 5297 5.806654 AATACAGCAGGTTTTGGATTGTT 57.193 34.783 0.00 0.00 0.00 2.83
2779 5298 5.539955 AGAAATACAGCAGGTTTTGGATTGT 59.460 36.000 0.00 0.00 28.52 2.71
2780 5299 5.865552 CAGAAATACAGCAGGTTTTGGATTG 59.134 40.000 0.00 0.00 28.52 2.67
2781 5300 5.047092 CCAGAAATACAGCAGGTTTTGGATT 60.047 40.000 0.00 0.00 29.10 3.01
2782 5301 4.463891 CCAGAAATACAGCAGGTTTTGGAT 59.536 41.667 0.00 0.00 0.00 3.41
2783 5302 3.826157 CCAGAAATACAGCAGGTTTTGGA 59.174 43.478 0.00 0.00 0.00 3.53
2784 5303 3.573967 ACCAGAAATACAGCAGGTTTTGG 59.426 43.478 0.00 0.00 0.00 3.28
2785 5304 4.853924 ACCAGAAATACAGCAGGTTTTG 57.146 40.909 0.00 0.00 0.00 2.44
2786 5305 4.501400 GCAACCAGAAATACAGCAGGTTTT 60.501 41.667 0.00 0.00 37.26 2.43
2787 5306 3.005791 GCAACCAGAAATACAGCAGGTTT 59.994 43.478 0.00 0.00 37.26 3.27
2788 5307 2.558359 GCAACCAGAAATACAGCAGGTT 59.442 45.455 0.00 0.00 39.76 3.50
2789 5308 2.162681 GCAACCAGAAATACAGCAGGT 58.837 47.619 0.00 0.00 0.00 4.00
2790 5309 1.474077 GGCAACCAGAAATACAGCAGG 59.526 52.381 0.00 0.00 0.00 4.85
2791 5310 2.440409 AGGCAACCAGAAATACAGCAG 58.560 47.619 0.00 0.00 37.17 4.24
2792 5311 2.584835 AGGCAACCAGAAATACAGCA 57.415 45.000 0.00 0.00 37.17 4.41
2793 5312 4.261801 TCTAAGGCAACCAGAAATACAGC 58.738 43.478 0.00 0.00 37.17 4.40
2794 5313 4.333926 GCTCTAAGGCAACCAGAAATACAG 59.666 45.833 0.00 0.00 37.17 2.74
2795 5314 4.261801 GCTCTAAGGCAACCAGAAATACA 58.738 43.478 0.00 0.00 37.17 2.29
2796 5315 4.261801 TGCTCTAAGGCAACCAGAAATAC 58.738 43.478 0.00 0.00 39.43 1.89
2797 5316 4.225042 TCTGCTCTAAGGCAACCAGAAATA 59.775 41.667 0.00 0.00 41.94 1.40
2798 5317 3.009473 TCTGCTCTAAGGCAACCAGAAAT 59.991 43.478 0.00 0.00 41.94 2.17
2799 5318 2.371841 TCTGCTCTAAGGCAACCAGAAA 59.628 45.455 0.00 0.00 41.94 2.52
2800 5319 1.977854 TCTGCTCTAAGGCAACCAGAA 59.022 47.619 0.00 0.00 41.94 3.02
2801 5320 1.276421 GTCTGCTCTAAGGCAACCAGA 59.724 52.381 0.00 0.00 41.94 3.86
2802 5321 1.277557 AGTCTGCTCTAAGGCAACCAG 59.722 52.381 0.00 0.00 41.94 4.00
2803 5322 1.352083 AGTCTGCTCTAAGGCAACCA 58.648 50.000 0.00 0.00 41.94 3.67
2804 5323 3.611766 TTAGTCTGCTCTAAGGCAACC 57.388 47.619 0.00 0.00 41.94 3.77
2805 5324 4.315803 TGTTTAGTCTGCTCTAAGGCAAC 58.684 43.478 0.00 0.00 41.94 4.17
2806 5325 4.617253 TGTTTAGTCTGCTCTAAGGCAA 57.383 40.909 0.00 0.00 41.94 4.52
2807 5326 4.507710 CATGTTTAGTCTGCTCTAAGGCA 58.492 43.478 0.00 0.00 40.15 4.75
2808 5327 3.311048 GCATGTTTAGTCTGCTCTAAGGC 59.689 47.826 0.00 0.00 32.55 4.35
2809 5328 4.764172 AGCATGTTTAGTCTGCTCTAAGG 58.236 43.478 0.00 0.00 42.35 2.69
2810 5329 6.695278 GTCTAGCATGTTTAGTCTGCTCTAAG 59.305 42.308 0.00 0.00 44.69 2.18
2811 5330 6.378564 AGTCTAGCATGTTTAGTCTGCTCTAA 59.621 38.462 0.00 0.00 44.69 2.10
2812 5331 5.888724 AGTCTAGCATGTTTAGTCTGCTCTA 59.111 40.000 0.00 0.00 44.69 2.43
2813 5332 4.709397 AGTCTAGCATGTTTAGTCTGCTCT 59.291 41.667 0.00 0.00 44.69 4.09
2814 5333 4.803088 CAGTCTAGCATGTTTAGTCTGCTC 59.197 45.833 15.02 0.00 44.69 4.26
2816 5335 4.748892 TCAGTCTAGCATGTTTAGTCTGC 58.251 43.478 18.99 0.00 35.59 4.26
2817 5336 7.840342 AATTCAGTCTAGCATGTTTAGTCTG 57.160 36.000 18.32 18.32 36.37 3.51
2818 5337 8.854614 AAAATTCAGTCTAGCATGTTTAGTCT 57.145 30.769 0.00 0.00 0.00 3.24
2819 5338 9.548208 GAAAAATTCAGTCTAGCATGTTTAGTC 57.452 33.333 0.00 0.00 0.00 2.59
2820 5339 9.289782 AGAAAAATTCAGTCTAGCATGTTTAGT 57.710 29.630 0.00 0.00 0.00 2.24
2823 5342 8.084684 GGAAGAAAAATTCAGTCTAGCATGTTT 58.915 33.333 0.00 0.00 0.00 2.83
2824 5343 7.449704 AGGAAGAAAAATTCAGTCTAGCATGTT 59.550 33.333 0.00 0.00 0.00 2.71
2825 5344 6.944862 AGGAAGAAAAATTCAGTCTAGCATGT 59.055 34.615 0.00 0.00 0.00 3.21
2826 5345 7.388460 AGGAAGAAAAATTCAGTCTAGCATG 57.612 36.000 0.00 0.00 0.00 4.06
2827 5346 8.414629 AAAGGAAGAAAAATTCAGTCTAGCAT 57.585 30.769 0.00 0.00 0.00 3.79
2828 5347 7.823745 AAAGGAAGAAAAATTCAGTCTAGCA 57.176 32.000 0.00 0.00 0.00 3.49
2829 5348 8.572185 AGAAAAGGAAGAAAAATTCAGTCTAGC 58.428 33.333 0.00 0.00 0.00 3.42
2830 5349 9.890352 CAGAAAAGGAAGAAAAATTCAGTCTAG 57.110 33.333 0.00 0.00 0.00 2.43
2831 5350 9.408648 ACAGAAAAGGAAGAAAAATTCAGTCTA 57.591 29.630 0.00 0.00 0.00 2.59
2832 5351 8.298729 ACAGAAAAGGAAGAAAAATTCAGTCT 57.701 30.769 0.00 0.00 0.00 3.24
2833 5352 8.811378 CAACAGAAAAGGAAGAAAAATTCAGTC 58.189 33.333 0.00 0.00 0.00 3.51
2834 5353 8.314021 ACAACAGAAAAGGAAGAAAAATTCAGT 58.686 29.630 0.00 0.00 0.00 3.41
2835 5354 8.598075 CACAACAGAAAAGGAAGAAAAATTCAG 58.402 33.333 0.00 0.00 0.00 3.02
2836 5355 8.093927 ACACAACAGAAAAGGAAGAAAAATTCA 58.906 29.630 0.00 0.00 0.00 2.57
2837 5356 8.479313 ACACAACAGAAAAGGAAGAAAAATTC 57.521 30.769 0.00 0.00 0.00 2.17
2838 5357 9.366216 GTACACAACAGAAAAGGAAGAAAAATT 57.634 29.630 0.00 0.00 0.00 1.82
2839 5358 8.749354 AGTACACAACAGAAAAGGAAGAAAAAT 58.251 29.630 0.00 0.00 0.00 1.82
2840 5359 8.026607 CAGTACACAACAGAAAAGGAAGAAAAA 58.973 33.333 0.00 0.00 0.00 1.94
2841 5360 7.535139 CAGTACACAACAGAAAAGGAAGAAAA 58.465 34.615 0.00 0.00 0.00 2.29
2842 5361 6.404293 GCAGTACACAACAGAAAAGGAAGAAA 60.404 38.462 0.00 0.00 0.00 2.52
2843 5362 5.065988 GCAGTACACAACAGAAAAGGAAGAA 59.934 40.000 0.00 0.00 0.00 2.52
2844 5363 4.574828 GCAGTACACAACAGAAAAGGAAGA 59.425 41.667 0.00 0.00 0.00 2.87
2845 5364 4.261197 GGCAGTACACAACAGAAAAGGAAG 60.261 45.833 0.00 0.00 0.00 3.46
2846 5365 3.630312 GGCAGTACACAACAGAAAAGGAA 59.370 43.478 0.00 0.00 0.00 3.36
2847 5366 3.211045 GGCAGTACACAACAGAAAAGGA 58.789 45.455 0.00 0.00 0.00 3.36
2848 5367 2.293399 GGGCAGTACACAACAGAAAAGG 59.707 50.000 0.00 0.00 0.00 3.11
2849 5368 2.948979 TGGGCAGTACACAACAGAAAAG 59.051 45.455 0.00 0.00 0.00 2.27
2850 5369 3.006112 TGGGCAGTACACAACAGAAAA 57.994 42.857 0.00 0.00 0.00 2.29
2851 5370 2.719531 TGGGCAGTACACAACAGAAA 57.280 45.000 0.00 0.00 0.00 2.52
2852 5371 2.171659 TCTTGGGCAGTACACAACAGAA 59.828 45.455 0.00 0.00 0.00 3.02
2853 5372 1.765904 TCTTGGGCAGTACACAACAGA 59.234 47.619 0.00 0.00 0.00 3.41
2854 5373 1.873591 GTCTTGGGCAGTACACAACAG 59.126 52.381 0.00 0.00 0.00 3.16
2855 5374 1.488812 AGTCTTGGGCAGTACACAACA 59.511 47.619 0.00 0.00 0.00 3.33
2856 5375 2.256117 AGTCTTGGGCAGTACACAAC 57.744 50.000 0.00 0.00 0.00 3.32
2857 5376 2.948979 CAAAGTCTTGGGCAGTACACAA 59.051 45.455 0.00 0.00 0.00 3.33
2858 5377 2.092646 ACAAAGTCTTGGGCAGTACACA 60.093 45.455 0.00 0.00 36.82 3.72
2859 5378 2.572290 ACAAAGTCTTGGGCAGTACAC 58.428 47.619 0.00 0.00 36.82 2.90
2860 5379 4.425180 TTACAAAGTCTTGGGCAGTACA 57.575 40.909 0.00 0.00 36.82 2.90
2861 5380 6.093633 CCTTATTACAAAGTCTTGGGCAGTAC 59.906 42.308 0.00 0.00 36.82 2.73
2862 5381 6.177610 CCTTATTACAAAGTCTTGGGCAGTA 58.822 40.000 0.00 0.00 36.82 2.74
2863 5382 5.010282 CCTTATTACAAAGTCTTGGGCAGT 58.990 41.667 0.00 0.00 36.82 4.40
2864 5383 5.010282 ACCTTATTACAAAGTCTTGGGCAG 58.990 41.667 0.00 0.00 36.82 4.85
2865 5384 4.993028 ACCTTATTACAAAGTCTTGGGCA 58.007 39.130 0.00 0.00 36.82 5.36
2866 5385 5.066117 GCTACCTTATTACAAAGTCTTGGGC 59.934 44.000 0.00 0.00 36.82 5.36
2867 5386 6.316390 CAGCTACCTTATTACAAAGTCTTGGG 59.684 42.308 0.00 0.00 36.82 4.12
2868 5387 7.064728 GTCAGCTACCTTATTACAAAGTCTTGG 59.935 40.741 0.00 0.00 36.82 3.61
2869 5388 7.201444 CGTCAGCTACCTTATTACAAAGTCTTG 60.201 40.741 0.00 0.00 38.61 3.02
2870 5389 6.812160 CGTCAGCTACCTTATTACAAAGTCTT 59.188 38.462 0.00 0.00 0.00 3.01
2871 5390 6.331061 CGTCAGCTACCTTATTACAAAGTCT 58.669 40.000 0.00 0.00 0.00 3.24
2872 5391 5.005490 GCGTCAGCTACCTTATTACAAAGTC 59.995 44.000 0.00 0.00 41.01 3.01
2873 5392 4.868734 GCGTCAGCTACCTTATTACAAAGT 59.131 41.667 0.00 0.00 41.01 2.66
2874 5393 4.270325 GGCGTCAGCTACCTTATTACAAAG 59.730 45.833 0.00 0.00 44.37 2.77
2875 5394 4.186159 GGCGTCAGCTACCTTATTACAAA 58.814 43.478 0.00 0.00 44.37 2.83
2876 5395 3.431207 GGGCGTCAGCTACCTTATTACAA 60.431 47.826 0.00 0.00 44.37 2.41
2877 5396 2.101917 GGGCGTCAGCTACCTTATTACA 59.898 50.000 0.00 0.00 44.37 2.41
2878 5397 2.364647 AGGGCGTCAGCTACCTTATTAC 59.635 50.000 0.00 0.00 44.37 1.89
2879 5398 2.626743 GAGGGCGTCAGCTACCTTATTA 59.373 50.000 1.64 0.00 44.37 0.98
2880 5399 1.413077 GAGGGCGTCAGCTACCTTATT 59.587 52.381 1.64 0.00 44.37 1.40
2881 5400 1.041437 GAGGGCGTCAGCTACCTTAT 58.959 55.000 1.64 0.00 44.37 1.73
2882 5401 1.381928 CGAGGGCGTCAGCTACCTTA 61.382 60.000 8.06 0.00 44.37 2.69
2883 5402 2.711922 CGAGGGCGTCAGCTACCTT 61.712 63.158 8.06 0.00 44.37 3.50
2884 5403 3.141488 CGAGGGCGTCAGCTACCT 61.141 66.667 8.06 0.00 44.37 3.08
2885 5404 4.874977 GCGAGGGCGTCAGCTACC 62.875 72.222 8.06 0.00 44.37 3.18
2902 5421 2.677003 ATCTTTGCACCGAACGCCG 61.677 57.895 0.00 0.00 38.18 6.46
2903 5422 1.154225 CATCTTTGCACCGAACGCC 60.154 57.895 0.00 0.00 0.00 5.68
2904 5423 1.154225 CCATCTTTGCACCGAACGC 60.154 57.895 0.00 0.00 0.00 4.84
2905 5424 1.086696 ATCCATCTTTGCACCGAACG 58.913 50.000 0.00 0.00 0.00 3.95
2906 5425 1.468054 GCATCCATCTTTGCACCGAAC 60.468 52.381 0.00 0.00 38.72 3.95
2907 5426 0.810648 GCATCCATCTTTGCACCGAA 59.189 50.000 0.00 0.00 38.72 4.30
2908 5427 0.035152 AGCATCCATCTTTGCACCGA 60.035 50.000 0.00 0.00 41.35 4.69
2909 5428 1.667236 TAGCATCCATCTTTGCACCG 58.333 50.000 0.00 0.00 41.35 4.94
2910 5429 4.234530 GATTAGCATCCATCTTTGCACC 57.765 45.455 0.00 0.00 41.35 5.01
2922 5441 0.179018 ACGGCTTGGGGATTAGCATC 60.179 55.000 0.00 0.00 0.00 3.91
2923 5442 1.136828 TACGGCTTGGGGATTAGCAT 58.863 50.000 0.00 0.00 0.00 3.79
2924 5443 1.136828 ATACGGCTTGGGGATTAGCA 58.863 50.000 0.00 0.00 0.00 3.49
2925 5444 1.523758 CATACGGCTTGGGGATTAGC 58.476 55.000 0.00 0.00 0.00 3.09
2926 5445 2.185004 CCATACGGCTTGGGGATTAG 57.815 55.000 0.00 0.00 0.00 1.73
2948 5467 2.967946 AAAGGTAGGAGCGCCACCC 61.968 63.158 19.30 13.62 36.55 4.61
2949 5468 1.745489 CAAAGGTAGGAGCGCCACC 60.745 63.158 9.88 14.05 36.31 4.61
2950 5469 0.248289 TACAAAGGTAGGAGCGCCAC 59.752 55.000 9.88 4.87 36.29 5.01
2951 5470 0.248289 GTACAAAGGTAGGAGCGCCA 59.752 55.000 9.88 0.00 36.29 5.69
2952 5471 0.248289 TGTACAAAGGTAGGAGCGCC 59.752 55.000 2.29 0.00 0.00 6.53
2953 5472 1.641577 CTGTACAAAGGTAGGAGCGC 58.358 55.000 0.00 0.00 0.00 5.92
2954 5473 1.822990 TCCTGTACAAAGGTAGGAGCG 59.177 52.381 0.00 0.00 38.58 5.03
2955 5474 4.489306 AATCCTGTACAAAGGTAGGAGC 57.511 45.455 0.00 0.00 38.58 4.70
2956 5475 5.186198 CCAAATCCTGTACAAAGGTAGGAG 58.814 45.833 0.00 0.00 38.58 3.69
2957 5476 4.600111 ACCAAATCCTGTACAAAGGTAGGA 59.400 41.667 0.00 0.00 38.58 2.94
2958 5477 4.700213 CACCAAATCCTGTACAAAGGTAGG 59.300 45.833 0.00 0.00 38.58 3.18
2959 5478 4.700213 CCACCAAATCCTGTACAAAGGTAG 59.300 45.833 0.00 0.00 38.58 3.18
2960 5479 4.658063 CCACCAAATCCTGTACAAAGGTA 58.342 43.478 0.00 0.00 38.58 3.08
2961 5480 3.496331 CCACCAAATCCTGTACAAAGGT 58.504 45.455 0.00 0.00 38.58 3.50
2962 5481 2.231235 GCCACCAAATCCTGTACAAAGG 59.769 50.000 0.00 0.00 38.84 3.11
2963 5482 2.231235 GGCCACCAAATCCTGTACAAAG 59.769 50.000 0.00 0.00 0.00 2.77
2964 5483 2.243810 GGCCACCAAATCCTGTACAAA 58.756 47.619 0.00 0.00 0.00 2.83
2965 5484 1.145945 TGGCCACCAAATCCTGTACAA 59.854 47.619 0.00 0.00 0.00 2.41
2966 5485 0.774276 TGGCCACCAAATCCTGTACA 59.226 50.000 0.00 0.00 0.00 2.90
2967 5486 1.463674 CTGGCCACCAAATCCTGTAC 58.536 55.000 0.00 0.00 30.80 2.90
2968 5487 0.323360 GCTGGCCACCAAATCCTGTA 60.323 55.000 0.00 0.00 30.80 2.74
2969 5488 1.607467 GCTGGCCACCAAATCCTGT 60.607 57.895 0.00 0.00 30.80 4.00
2970 5489 2.703798 CGCTGGCCACCAAATCCTG 61.704 63.158 0.00 0.00 30.80 3.86
2971 5490 2.215451 ATCGCTGGCCACCAAATCCT 62.215 55.000 0.00 0.00 30.80 3.24
2972 5491 1.322538 AATCGCTGGCCACCAAATCC 61.323 55.000 0.00 0.00 30.80 3.01
2973 5492 1.388547 TAATCGCTGGCCACCAAATC 58.611 50.000 0.00 0.00 30.80 2.17
2974 5493 1.682854 CATAATCGCTGGCCACCAAAT 59.317 47.619 0.00 0.00 30.80 2.32
2975 5494 1.102154 CATAATCGCTGGCCACCAAA 58.898 50.000 0.00 0.00 30.80 3.28
2976 5495 1.383456 GCATAATCGCTGGCCACCAA 61.383 55.000 0.00 0.00 30.80 3.67
2977 5496 1.823470 GCATAATCGCTGGCCACCA 60.823 57.895 0.00 0.00 0.00 4.17
2978 5497 1.526917 AGCATAATCGCTGGCCACC 60.527 57.895 0.00 0.00 41.85 4.61
2979 5498 4.147701 AGCATAATCGCTGGCCAC 57.852 55.556 0.00 0.00 41.85 5.01
2985 5504 0.806102 ACGAACGCAGCATAATCGCT 60.806 50.000 0.00 0.00 45.21 4.93
2986 5505 0.026285 AACGAACGCAGCATAATCGC 59.974 50.000 0.00 0.00 37.03 4.58
2987 5506 1.592110 CCAACGAACGCAGCATAATCG 60.592 52.381 0.00 0.00 39.30 3.34
2988 5507 1.396996 ACCAACGAACGCAGCATAATC 59.603 47.619 0.00 0.00 0.00 1.75
2989 5508 1.448985 ACCAACGAACGCAGCATAAT 58.551 45.000 0.00 0.00 0.00 1.28
2990 5509 1.231221 AACCAACGAACGCAGCATAA 58.769 45.000 0.00 0.00 0.00 1.90
2991 5510 2.081725 TAACCAACGAACGCAGCATA 57.918 45.000 0.00 0.00 0.00 3.14
2992 5511 1.231221 TTAACCAACGAACGCAGCAT 58.769 45.000 0.00 0.00 0.00 3.79
2993 5512 1.069568 CATTAACCAACGAACGCAGCA 60.070 47.619 0.00 0.00 0.00 4.41
2994 5513 1.602191 CATTAACCAACGAACGCAGC 58.398 50.000 0.00 0.00 0.00 5.25
2995 5514 1.801771 TCCATTAACCAACGAACGCAG 59.198 47.619 0.00 0.00 0.00 5.18
2996 5515 1.880271 TCCATTAACCAACGAACGCA 58.120 45.000 0.00 0.00 0.00 5.24
2997 5516 2.973419 TTCCATTAACCAACGAACGC 57.027 45.000 0.00 0.00 0.00 4.84
2998 5517 9.165014 CATATTTATTCCATTAACCAACGAACG 57.835 33.333 0.00 0.00 0.00 3.95
3039 5558 2.036992 TGCGATTCCCTTGCATGTTTTT 59.963 40.909 0.00 0.00 39.44 1.94
3040 5559 1.617850 TGCGATTCCCTTGCATGTTTT 59.382 42.857 0.00 0.00 39.44 2.43
3041 5560 1.255882 TGCGATTCCCTTGCATGTTT 58.744 45.000 0.00 0.00 39.44 2.83
3042 5561 1.067635 GTTGCGATTCCCTTGCATGTT 60.068 47.619 0.00 0.00 43.90 2.71
3043 5562 0.527565 GTTGCGATTCCCTTGCATGT 59.472 50.000 0.00 0.00 43.90 3.21
3044 5563 0.527113 TGTTGCGATTCCCTTGCATG 59.473 50.000 0.00 0.00 43.90 4.06
3045 5564 2.959967 TGTTGCGATTCCCTTGCAT 58.040 47.368 0.00 0.00 43.90 3.96
3046 5565 4.490696 TGTTGCGATTCCCTTGCA 57.509 50.000 0.00 0.00 42.76 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.