Multiple sequence alignment - TraesCS2D01G064100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G064100 chr2D 100.000 9534 0 0 1 9534 27529649 27520116 0.000000e+00 17607.0
1 TraesCS2D01G064100 chr2D 95.679 2453 89 6 2457 4896 647844821 647842373 0.000000e+00 3927.0
2 TraesCS2D01G064100 chr2D 89.715 2489 182 37 2454 4894 15825428 15827890 0.000000e+00 3110.0
3 TraesCS2D01G064100 chr2D 78.906 768 134 20 6613 7369 27457491 27458241 6.650000e-136 496.0
4 TraesCS2D01G064100 chr2D 78.617 781 124 30 6604 7370 27333247 27333998 2.410000e-130 477.0
5 TraesCS2D01G064100 chr2D 76.235 972 173 32 5505 6424 27324663 27325628 6.750000e-126 462.0
6 TraesCS2D01G064100 chr2D 82.430 535 83 10 8063 8590 27458807 27459337 3.140000e-124 457.0
7 TraesCS2D01G064100 chr2D 76.111 900 164 26 7639 8525 27326754 27327615 3.180000e-114 424.0
8 TraesCS2D01G064100 chr2D 82.627 472 78 4 6909 7378 27326104 27326573 1.920000e-111 414.0
9 TraesCS2D01G064100 chr2D 76.387 775 146 26 6622 7378 27501875 27501120 5.400000e-102 383.0
10 TraesCS2D01G064100 chr2D 85.876 354 43 5 943 1295 27451585 27451932 4.210000e-98 370.0
11 TraesCS2D01G064100 chr2D 83.602 372 42 7 916 1287 27330876 27331228 1.980000e-86 331.0
12 TraesCS2D01G064100 chr2D 82.812 384 53 6 912 1295 27370787 27371157 1.980000e-86 331.0
13 TraesCS2D01G064100 chr2D 80.488 410 75 5 6945 7352 27277574 27277980 9.300000e-80 309.0
14 TraesCS2D01G064100 chr2D 83.630 281 43 3 8258 8536 27320102 27320381 2.640000e-65 261.0
15 TraesCS2D01G064100 chr2D 83.128 243 41 0 8283 8525 27493550 27493308 1.250000e-53 222.0
16 TraesCS2D01G064100 chr2A 93.267 4515 245 29 4893 9395 29736180 29731713 0.000000e+00 6599.0
17 TraesCS2D01G064100 chr2A 93.471 1547 81 7 916 2459 29737706 29736177 0.000000e+00 2279.0
18 TraesCS2D01G064100 chr2A 87.158 1059 116 11 2443 3490 286479397 286478348 0.000000e+00 1184.0
19 TraesCS2D01G064100 chr2A 80.595 639 110 12 6744 7376 29654612 29655242 1.860000e-131 481.0
20 TraesCS2D01G064100 chr2A 77.128 787 135 21 7749 8525 29647738 29648489 1.920000e-111 414.0
21 TraesCS2D01G064100 chr2A 75.420 952 170 38 5517 6424 29645198 29646129 4.150000e-108 403.0
22 TraesCS2D01G064100 chr2A 83.032 442 74 1 6937 7378 29647017 29647457 5.360000e-107 399.0
23 TraesCS2D01G064100 chr2A 81.008 516 59 19 399 881 29738220 29737711 3.250000e-99 374.0
24 TraesCS2D01G064100 chr2A 88.502 287 33 0 1001 1287 29652955 29653241 1.970000e-91 348.0
25 TraesCS2D01G064100 chr2A 80.340 412 72 8 6945 7352 29602566 29602972 4.330000e-78 303.0
26 TraesCS2D01G064100 chr2A 84.249 273 41 2 8266 8536 29618748 29619020 2.040000e-66 265.0
27 TraesCS2D01G064100 chr2A 89.394 66 5 1 9405 9468 29730303 29730238 2.210000e-11 82.4
28 TraesCS2D01G064100 chr2A 97.674 43 1 0 9405 9447 29729435 29729393 3.690000e-09 75.0
29 TraesCS2D01G064100 chr2B 96.200 3421 103 16 5363 8769 43246774 43243367 0.000000e+00 5572.0
30 TraesCS2D01G064100 chr2B 89.772 1359 97 16 675 2028 43248130 43246809 0.000000e+00 1701.0
31 TraesCS2D01G064100 chr2B 81.034 638 109 10 6744 7376 43055053 43054423 1.850000e-136 497.0
32 TraesCS2D01G064100 chr2B 83.120 468 70 6 8228 8689 43053187 43052723 1.480000e-112 418.0
33 TraesCS2D01G064100 chr2B 81.395 473 87 1 6906 7378 43116295 43115824 1.500000e-102 385.0
34 TraesCS2D01G064100 chr2B 77.370 654 124 16 5438 6075 43117234 43116589 5.440000e-97 366.0
35 TraesCS2D01G064100 chr2B 91.566 249 18 1 390 635 43271305 43271057 3.300000e-89 340.0
36 TraesCS2D01G064100 chr2B 85.806 310 24 8 5 294 43271969 43271660 2.590000e-80 311.0
37 TraesCS2D01G064100 chr2B 83.099 284 44 4 8256 8536 43157248 43156966 1.230000e-63 255.0
38 TraesCS2D01G064100 chr5D 95.397 2455 93 5 2456 4896 426791697 426794145 0.000000e+00 3890.0
39 TraesCS2D01G064100 chr5D 85.887 2487 224 63 2459 4897 117836953 117834546 0.000000e+00 2531.0
40 TraesCS2D01G064100 chr7D 91.005 2457 183 18 2459 4894 121034665 121037104 0.000000e+00 3278.0
41 TraesCS2D01G064100 chr7B 90.673 2466 193 14 2456 4895 736199786 736197332 0.000000e+00 3245.0
42 TraesCS2D01G064100 chr7B 90.470 2466 192 22 2456 4895 736166144 736163696 0.000000e+00 3212.0
43 TraesCS2D01G064100 chr1D 91.252 2332 152 14 2590 4897 493031159 493033462 0.000000e+00 3129.0
44 TraesCS2D01G064100 chr1D 88.262 1099 90 20 3827 4897 196111475 196110388 0.000000e+00 1279.0
45 TraesCS2D01G064100 chr1D 89.250 800 51 16 4125 4897 453304171 453304962 0.000000e+00 968.0
46 TraesCS2D01G064100 chr1D 88.501 687 48 11 4234 4894 415678577 415677896 0.000000e+00 802.0
47 TraesCS2D01G064100 chr1D 81.622 185 22 6 4721 4894 288922524 288922707 9.980000e-30 143.0
48 TraesCS2D01G064100 chr1D 75.113 221 37 10 4691 4897 491944884 491944668 4.740000e-13 87.9
49 TraesCS2D01G064100 chr1D 86.076 79 5 5 4820 4897 189799850 189799777 7.940000e-11 80.5
50 TraesCS2D01G064100 chr5A 89.019 2468 207 25 2457 4896 640024457 640022026 0.000000e+00 2998.0
51 TraesCS2D01G064100 chr5A 87.539 321 27 4 4589 4898 650115225 650114907 9.100000e-95 359.0
52 TraesCS2D01G064100 chr3D 91.547 2153 157 15 2453 4596 482948037 482950173 0.000000e+00 2944.0
53 TraesCS2D01G064100 chr3D 90.690 1203 65 20 3720 4901 165462978 165464154 0.000000e+00 1557.0
54 TraesCS2D01G064100 chr3D 88.770 1122 60 25 3797 4897 174068383 174069459 0.000000e+00 1314.0
55 TraesCS2D01G064100 chr1A 88.632 2463 222 31 2459 4894 555719273 555716842 0.000000e+00 2944.0
56 TraesCS2D01G064100 chr1A 88.358 2448 210 37 2486 4896 16302082 16304491 0.000000e+00 2872.0
57 TraesCS2D01G064100 chr1A 83.907 901 73 30 4031 4897 27508927 27508065 0.000000e+00 795.0
58 TraesCS2D01G064100 chr3A 88.499 2452 224 26 2472 4894 177902974 177905396 0.000000e+00 2913.0
59 TraesCS2D01G064100 chr6A 85.119 2473 276 50 2457 4903 22760362 22757956 0.000000e+00 2444.0
60 TraesCS2D01G064100 chr1B 83.393 2499 288 67 2457 4897 643118054 643115625 0.000000e+00 2198.0
61 TraesCS2D01G064100 chrUn 89.981 1587 84 28 3335 4897 220600267 220601802 0.000000e+00 1980.0
62 TraesCS2D01G064100 chrUn 75.844 770 124 42 4171 4896 2093405 2094156 1.530000e-87 335.0
63 TraesCS2D01G064100 chrUn 75.676 296 41 22 4619 4896 96290443 96290161 1.680000e-22 119.0
64 TraesCS2D01G064100 chrUn 78.443 167 22 8 4743 4897 295995235 295995399 7.880000e-16 97.1
65 TraesCS2D01G064100 chrUn 78.443 167 22 8 4743 4897 313229247 313229411 7.880000e-16 97.1
66 TraesCS2D01G064100 chrUn 85.882 85 8 4 4820 4902 382212547 382212629 4.740000e-13 87.9
67 TraesCS2D01G064100 chr6D 88.086 1024 77 19 3908 4897 420531782 420532794 0.000000e+00 1173.0
68 TraesCS2D01G064100 chr6D 89.444 701 48 7 4207 4894 114772626 114771939 0.000000e+00 861.0
69 TraesCS2D01G064100 chr6D 90.283 494 33 4 4418 4897 444885727 444885235 4.860000e-177 632.0
70 TraesCS2D01G064100 chr6D 90.024 411 23 8 4499 4894 37118826 37119233 5.100000e-142 516.0
71 TraesCS2D01G064100 chr6D 82.353 170 17 4 4735 4894 131938226 131938392 1.670000e-27 135.0
72 TraesCS2D01G064100 chr3B 90.997 311 26 2 1008 1317 397229699 397230008 1.480000e-112 418.0
73 TraesCS2D01G064100 chr4D 79.787 188 23 8 4722 4897 91092752 91092936 1.300000e-23 122.0
74 TraesCS2D01G064100 chr4D 76.316 190 30 7 4717 4894 304462384 304462570 4.740000e-13 87.9
75 TraesCS2D01G064100 chr4D 88.889 72 3 4 4828 4897 479386378 479386310 6.140000e-12 84.2
76 TraesCS2D01G064100 chr4D 85.526 76 6 4 4820 4894 139309566 139309637 3.690000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G064100 chr2D 27520116 27529649 9533 True 17607.000000 17607 100.000000 1 9534 1 chr2D.!!$R3 9533
1 TraesCS2D01G064100 chr2D 647842373 647844821 2448 True 3927.000000 3927 95.679000 2457 4896 1 chr2D.!!$R4 2439
2 TraesCS2D01G064100 chr2D 15825428 15827890 2462 False 3110.000000 3110 89.715000 2454 4894 1 chr2D.!!$F1 2440
3 TraesCS2D01G064100 chr2D 27457491 27459337 1846 False 476.500000 496 80.668000 6613 8590 2 chr2D.!!$F7 1977
4 TraesCS2D01G064100 chr2D 27324663 27333998 9335 False 421.600000 477 79.438400 916 8525 5 chr2D.!!$F6 7609
5 TraesCS2D01G064100 chr2D 27501120 27501875 755 True 383.000000 383 76.387000 6622 7378 1 chr2D.!!$R2 756
6 TraesCS2D01G064100 chr2A 29729393 29738220 8827 True 1881.880000 6599 90.962800 399 9468 5 chr2A.!!$R2 9069
7 TraesCS2D01G064100 chr2A 286478348 286479397 1049 True 1184.000000 1184 87.158000 2443 3490 1 chr2A.!!$R1 1047
8 TraesCS2D01G064100 chr2A 29652955 29655242 2287 False 414.500000 481 84.548500 1001 7376 2 chr2A.!!$F4 6375
9 TraesCS2D01G064100 chr2A 29645198 29648489 3291 False 405.333333 414 78.526667 5517 8525 3 chr2A.!!$F3 3008
10 TraesCS2D01G064100 chr2B 43243367 43248130 4763 True 3636.500000 5572 92.986000 675 8769 2 chr2B.!!$R4 8094
11 TraesCS2D01G064100 chr2B 43052723 43055053 2330 True 457.500000 497 82.077000 6744 8689 2 chr2B.!!$R2 1945
12 TraesCS2D01G064100 chr2B 43115824 43117234 1410 True 375.500000 385 79.382500 5438 7378 2 chr2B.!!$R3 1940
13 TraesCS2D01G064100 chr2B 43271057 43271969 912 True 325.500000 340 88.686000 5 635 2 chr2B.!!$R5 630
14 TraesCS2D01G064100 chr5D 426791697 426794145 2448 False 3890.000000 3890 95.397000 2456 4896 1 chr5D.!!$F1 2440
15 TraesCS2D01G064100 chr5D 117834546 117836953 2407 True 2531.000000 2531 85.887000 2459 4897 1 chr5D.!!$R1 2438
16 TraesCS2D01G064100 chr7D 121034665 121037104 2439 False 3278.000000 3278 91.005000 2459 4894 1 chr7D.!!$F1 2435
17 TraesCS2D01G064100 chr7B 736197332 736199786 2454 True 3245.000000 3245 90.673000 2456 4895 1 chr7B.!!$R2 2439
18 TraesCS2D01G064100 chr7B 736163696 736166144 2448 True 3212.000000 3212 90.470000 2456 4895 1 chr7B.!!$R1 2439
19 TraesCS2D01G064100 chr1D 493031159 493033462 2303 False 3129.000000 3129 91.252000 2590 4897 1 chr1D.!!$F3 2307
20 TraesCS2D01G064100 chr1D 196110388 196111475 1087 True 1279.000000 1279 88.262000 3827 4897 1 chr1D.!!$R2 1070
21 TraesCS2D01G064100 chr1D 453304171 453304962 791 False 968.000000 968 89.250000 4125 4897 1 chr1D.!!$F2 772
22 TraesCS2D01G064100 chr1D 415677896 415678577 681 True 802.000000 802 88.501000 4234 4894 1 chr1D.!!$R3 660
23 TraesCS2D01G064100 chr5A 640022026 640024457 2431 True 2998.000000 2998 89.019000 2457 4896 1 chr5A.!!$R1 2439
24 TraesCS2D01G064100 chr3D 482948037 482950173 2136 False 2944.000000 2944 91.547000 2453 4596 1 chr3D.!!$F3 2143
25 TraesCS2D01G064100 chr3D 165462978 165464154 1176 False 1557.000000 1557 90.690000 3720 4901 1 chr3D.!!$F1 1181
26 TraesCS2D01G064100 chr3D 174068383 174069459 1076 False 1314.000000 1314 88.770000 3797 4897 1 chr3D.!!$F2 1100
27 TraesCS2D01G064100 chr1A 555716842 555719273 2431 True 2944.000000 2944 88.632000 2459 4894 1 chr1A.!!$R2 2435
28 TraesCS2D01G064100 chr1A 16302082 16304491 2409 False 2872.000000 2872 88.358000 2486 4896 1 chr1A.!!$F1 2410
29 TraesCS2D01G064100 chr1A 27508065 27508927 862 True 795.000000 795 83.907000 4031 4897 1 chr1A.!!$R1 866
30 TraesCS2D01G064100 chr3A 177902974 177905396 2422 False 2913.000000 2913 88.499000 2472 4894 1 chr3A.!!$F1 2422
31 TraesCS2D01G064100 chr6A 22757956 22760362 2406 True 2444.000000 2444 85.119000 2457 4903 1 chr6A.!!$R1 2446
32 TraesCS2D01G064100 chr1B 643115625 643118054 2429 True 2198.000000 2198 83.393000 2457 4897 1 chr1B.!!$R1 2440
33 TraesCS2D01G064100 chrUn 220600267 220601802 1535 False 1980.000000 1980 89.981000 3335 4897 1 chrUn.!!$F2 1562
34 TraesCS2D01G064100 chrUn 2093405 2094156 751 False 335.000000 335 75.844000 4171 4896 1 chrUn.!!$F1 725
35 TraesCS2D01G064100 chr6D 420531782 420532794 1012 False 1173.000000 1173 88.086000 3908 4897 1 chr6D.!!$F3 989
36 TraesCS2D01G064100 chr6D 114771939 114772626 687 True 861.000000 861 89.444000 4207 4894 1 chr6D.!!$R1 687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 778 0.250124 TCCGTGACAAAGACGCCAAT 60.250 50.000 0.00 0.0 35.45 3.16 F
1738 2096 0.482446 ACATGGAGGGCAAAGACCAA 59.518 50.000 0.00 0.0 36.00 3.67 F
1772 2130 0.039035 TTTTTGGCCAGCCTATCCGT 59.961 50.000 5.11 0.0 36.94 4.69 F
2131 2490 0.318762 GAGGGGCGCTATGTCCTTAG 59.681 60.000 7.64 0.0 44.07 2.18 F
2628 2995 1.148310 CCGCTCATCACAAAAGACGT 58.852 50.000 0.00 0.0 0.00 4.34 F
2678 3049 1.199327 CGGCGATCGGATGTAGTATGT 59.801 52.381 18.30 0.0 34.75 2.29 F
3857 4337 2.125229 TCCTCGTCGTCCTCCTCG 60.125 66.667 0.00 0.0 0.00 4.63 F
4907 5559 6.014242 TGGAGATGCTCTAACCACAATATAGG 60.014 42.308 0.00 0.0 0.00 2.57 F
5537 6198 2.431782 CCACATGGGGAAAATCATCACC 59.568 50.000 8.91 0.0 43.65 4.02 F
6896 7697 2.355756 CGGGGATCATACAAGCAACAAG 59.644 50.000 0.00 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1753 2111 0.039035 ACGGATAGGCTGGCCAAAAA 59.961 50.000 7.01 0.00 38.92 1.94 R
3515 3967 0.038435 CGTGCAACAAATGGCATGGA 60.038 50.000 0.00 0.00 42.75 3.41 R
3622 4075 0.108615 CAAGGCCGAGTTCGATGAGT 60.109 55.000 2.59 0.00 43.02 3.41 R
3857 4337 2.730524 GGAGGAGCAGGAGCAGGAC 61.731 68.421 0.00 0.00 45.49 3.85 R
3991 4483 2.739609 GCTGACATGGACGACATCATCA 60.740 50.000 0.00 0.00 37.84 3.07 R
4684 5297 3.062466 CCCTGTCGGCGAGTCTGA 61.062 66.667 11.20 0.00 0.00 3.27 R
4752 5389 4.711949 CAGGCAGAACCCAGCGCT 62.712 66.667 2.64 2.64 40.58 5.92 R
6848 7648 1.534729 CCTTTGTTGGCCAGTACCTC 58.465 55.000 5.11 0.00 0.00 3.85 R
7307 8455 3.701205 TTCACCAGTAGTGCATCATGT 57.299 42.857 0.00 0.00 46.81 3.21 R
8823 10611 0.331616 GGTTGGGTGGCTAACAGGAT 59.668 55.000 0.00 0.00 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.353103 GACATTCTTCGGCATGGCG 59.647 57.895 33.54 33.54 0.00 5.69
76 78 1.271127 TTGATCCATCGACTGGGGCA 61.271 55.000 12.17 8.75 45.98 5.36
77 79 1.056125 TGATCCATCGACTGGGGCAT 61.056 55.000 12.17 1.74 45.98 4.40
78 80 0.321122 GATCCATCGACTGGGGCATC 60.321 60.000 12.17 6.31 45.98 3.91
79 81 0.765903 ATCCATCGACTGGGGCATCT 60.766 55.000 12.17 0.00 45.98 2.90
80 82 0.982852 TCCATCGACTGGGGCATCTT 60.983 55.000 12.17 0.00 45.98 2.40
83 85 1.700042 ATCGACTGGGGCATCTTCCC 61.700 60.000 0.00 0.00 45.80 3.97
97 118 0.835941 CTTCCCATGTGAGGAGGAGG 59.164 60.000 0.00 0.00 32.33 4.30
141 162 4.585581 TCGATCCGGTAGAAATCCATTACA 59.414 41.667 0.00 0.00 0.00 2.41
143 164 5.932303 CGATCCGGTAGAAATCCATTACATT 59.068 40.000 0.00 0.00 0.00 2.71
151 172 3.883830 AATCCATTACATTGCCGCAAA 57.116 38.095 10.42 0.00 0.00 3.68
154 175 1.593933 CCATTACATTGCCGCAAATGC 59.406 47.619 10.42 0.00 40.54 3.56
196 217 2.035442 GGCTCGAGTTTGGTCTGCC 61.035 63.158 15.13 2.18 0.00 4.85
205 226 2.819984 TTTGGTCTGCCGCCCATCTC 62.820 60.000 0.00 0.00 37.67 2.75
230 251 1.659098 GCACAGGCGTATGAGTGTTAC 59.341 52.381 0.00 0.00 34.59 2.50
245 266 3.379865 TTACAGGGATCGGTGCGCC 62.380 63.158 6.11 6.11 0.00 6.53
298 319 3.367743 CCGCTGCACTGCCAACAT 61.368 61.111 0.00 0.00 0.00 2.71
299 320 2.126618 CGCTGCACTGCCAACATG 60.127 61.111 0.00 0.00 0.00 3.21
300 321 2.260434 GCTGCACTGCCAACATGG 59.740 61.111 0.00 0.00 41.55 3.66
334 355 4.357947 GTCGCACACTGCCTCGGA 62.358 66.667 0.00 0.00 41.12 4.55
347 368 3.403276 CTCGGACGAGGAAGTTGTC 57.597 57.895 13.59 0.00 38.73 3.18
355 376 1.784525 GAGGAAGTTGTCTGTGTCCG 58.215 55.000 0.00 0.00 33.38 4.79
369 390 2.435938 TCCGCATCCTCAAACGGC 60.436 61.111 0.00 0.00 45.23 5.68
384 405 2.383527 CGGCAGAGGAGAAACACGC 61.384 63.158 0.00 0.00 0.00 5.34
387 408 2.430921 AGAGGAGAAACACGCGCG 60.431 61.111 30.96 30.96 0.00 6.86
411 727 0.460109 TCGACAATGTGCAGATCCGG 60.460 55.000 0.00 0.00 0.00 5.14
425 741 4.460263 CAGATCCGGGTTGATCCATTTTA 58.540 43.478 0.00 0.00 41.73 1.52
435 751 4.118093 TGATCCATTTTACGCTTCGAGA 57.882 40.909 0.00 0.00 0.00 4.04
436 752 4.112634 TGATCCATTTTACGCTTCGAGAG 58.887 43.478 0.00 0.00 0.00 3.20
461 778 0.250124 TCCGTGACAAAGACGCCAAT 60.250 50.000 0.00 0.00 35.45 3.16
500 817 3.570550 AGGCAAGGTAGACGTAGATGATC 59.429 47.826 0.00 0.00 0.00 2.92
544 864 8.184361 TGTATGTACAAATGCCAAGTGTTGGG 62.184 42.308 0.00 0.00 41.26 4.12
600 929 5.009710 TGTGGGATCATAGAGCTAGTTTACG 59.990 44.000 0.00 0.00 0.00 3.18
640 969 7.523293 TGAATTTGGAGTTTGCTAAATGAGA 57.477 32.000 0.00 0.00 30.69 3.27
644 973 7.391148 TTTGGAGTTTGCTAAATGAGATACC 57.609 36.000 0.00 0.00 0.00 2.73
645 974 5.437060 TGGAGTTTGCTAAATGAGATACCC 58.563 41.667 0.00 0.00 0.00 3.69
646 975 4.511826 GGAGTTTGCTAAATGAGATACCCG 59.488 45.833 0.00 0.00 0.00 5.28
647 976 4.451900 AGTTTGCTAAATGAGATACCCGG 58.548 43.478 0.00 0.00 0.00 5.73
648 977 2.543777 TGCTAAATGAGATACCCGGC 57.456 50.000 0.00 0.00 0.00 6.13
651 980 2.224305 GCTAAATGAGATACCCGGCTGT 60.224 50.000 0.00 0.00 0.00 4.40
653 982 1.496060 AATGAGATACCCGGCTGTGA 58.504 50.000 0.00 0.00 0.00 3.58
654 983 1.496060 ATGAGATACCCGGCTGTGAA 58.504 50.000 0.00 0.00 0.00 3.18
655 984 1.271856 TGAGATACCCGGCTGTGAAA 58.728 50.000 0.00 0.00 0.00 2.69
656 985 1.626321 TGAGATACCCGGCTGTGAAAA 59.374 47.619 0.00 0.00 0.00 2.29
657 986 2.238646 TGAGATACCCGGCTGTGAAAAT 59.761 45.455 0.00 0.00 0.00 1.82
659 988 4.080807 TGAGATACCCGGCTGTGAAAATAA 60.081 41.667 0.00 0.00 0.00 1.40
660 989 4.850680 AGATACCCGGCTGTGAAAATAAA 58.149 39.130 0.00 0.00 0.00 1.40
661 990 5.258051 AGATACCCGGCTGTGAAAATAAAA 58.742 37.500 0.00 0.00 0.00 1.52
664 993 5.986501 ACCCGGCTGTGAAAATAAAAATA 57.013 34.783 0.00 0.00 0.00 1.40
665 994 5.716094 ACCCGGCTGTGAAAATAAAAATAC 58.284 37.500 0.00 0.00 0.00 1.89
666 995 4.796312 CCCGGCTGTGAAAATAAAAATACG 59.204 41.667 0.00 0.00 0.00 3.06
667 996 5.392165 CCCGGCTGTGAAAATAAAAATACGA 60.392 40.000 0.00 0.00 0.00 3.43
669 998 5.737290 CGGCTGTGAAAATAAAAATACGAGG 59.263 40.000 0.00 0.00 0.00 4.63
670 999 6.033966 GGCTGTGAAAATAAAAATACGAGGG 58.966 40.000 0.00 0.00 0.00 4.30
671 1000 6.033966 GCTGTGAAAATAAAAATACGAGGGG 58.966 40.000 0.00 0.00 0.00 4.79
672 1001 6.349860 GCTGTGAAAATAAAAATACGAGGGGT 60.350 38.462 0.00 0.00 0.00 4.95
673 1002 6.915349 TGTGAAAATAAAAATACGAGGGGTG 58.085 36.000 0.00 0.00 0.00 4.61
674 1003 6.715718 TGTGAAAATAAAAATACGAGGGGTGA 59.284 34.615 0.00 0.00 0.00 4.02
676 1005 6.943718 TGAAAATAAAAATACGAGGGGTGAGT 59.056 34.615 0.00 0.00 0.00 3.41
677 1006 8.102047 TGAAAATAAAAATACGAGGGGTGAGTA 58.898 33.333 0.00 0.00 0.00 2.59
678 1007 9.117183 GAAAATAAAAATACGAGGGGTGAGTAT 57.883 33.333 0.00 0.00 33.00 2.12
679 1008 8.446599 AAATAAAAATACGAGGGGTGAGTATG 57.553 34.615 0.00 0.00 32.12 2.39
680 1009 5.431179 AAAAATACGAGGGGTGAGTATGT 57.569 39.130 0.00 0.00 32.12 2.29
743 1097 2.676076 GCCGGCCATATTTTTAGCATG 58.324 47.619 18.11 0.00 0.00 4.06
830 1184 4.848299 GCATTTTCTGACTCGTTTCATGTC 59.152 41.667 0.00 0.00 0.00 3.06
899 1256 9.846248 AAAACATCAGCTCAATTAACAATCTAC 57.154 29.630 0.00 0.00 0.00 2.59
900 1257 8.798859 AACATCAGCTCAATTAACAATCTACT 57.201 30.769 0.00 0.00 0.00 2.57
901 1258 9.890629 AACATCAGCTCAATTAACAATCTACTA 57.109 29.630 0.00 0.00 0.00 1.82
905 1262 9.678941 TCAGCTCAATTAACAATCTACTATACG 57.321 33.333 0.00 0.00 0.00 3.06
906 1263 9.464714 CAGCTCAATTAACAATCTACTATACGT 57.535 33.333 0.00 0.00 0.00 3.57
907 1264 9.464714 AGCTCAATTAACAATCTACTATACGTG 57.535 33.333 0.00 0.00 0.00 4.49
908 1265 9.245962 GCTCAATTAACAATCTACTATACGTGT 57.754 33.333 0.00 0.00 0.00 4.49
1221 1578 1.073722 CAGCAACCTCTTGAGCCCA 59.926 57.895 0.00 0.00 0.00 5.36
1402 1760 8.184848 GTCTTCACTTTCTAGGCAAAAATATCC 58.815 37.037 0.00 0.00 0.00 2.59
1462 1820 6.127591 ACCAACACAAGCACAACAAATACTAA 60.128 34.615 0.00 0.00 0.00 2.24
1500 1858 3.369546 AAAGACCCGTGCATTTCTTTG 57.630 42.857 11.69 0.00 37.02 2.77
1522 1880 6.179906 TGGTTTCAAATTGCCCAAAAGATA 57.820 33.333 0.00 0.00 0.00 1.98
1572 1930 3.428452 CGGTCTCGTTAGATAAGCCAACA 60.428 47.826 0.00 0.00 33.30 3.33
1628 1986 7.764443 CCGGTTCAAAGTATCGATATATTCCAT 59.236 37.037 8.66 0.00 0.00 3.41
1693 2051 0.877743 GCCACACTTGAAGAAGAGGC 59.122 55.000 12.59 12.59 37.70 4.70
1738 2096 0.482446 ACATGGAGGGCAAAGACCAA 59.518 50.000 0.00 0.00 36.00 3.67
1754 2112 2.524569 CCAAAAATTGGCCAGTCGTT 57.475 45.000 5.11 0.00 45.17 3.85
1755 2113 2.832563 CCAAAAATTGGCCAGTCGTTT 58.167 42.857 5.11 4.76 45.17 3.60
1772 2130 0.039035 TTTTTGGCCAGCCTATCCGT 59.961 50.000 5.11 0.00 36.94 4.69
1776 2134 2.590092 GCCAGCCTATCCGTGGTT 59.410 61.111 0.00 0.00 33.51 3.67
1859 2217 1.135199 CAAGACAACATGCTCCATGGC 60.135 52.381 6.96 0.00 45.16 4.40
1893 2251 3.444742 TGCCAAGGAATTGAGCATTGTAG 59.555 43.478 0.00 0.00 0.00 2.74
1980 2338 7.442364 CCTCAAGAAGAATGAAGTCACAAAGTA 59.558 37.037 0.00 0.00 0.00 2.24
1981 2339 8.731275 TCAAGAAGAATGAAGTCACAAAGTAA 57.269 30.769 0.00 0.00 0.00 2.24
2001 2359 3.643199 ACCCCAAGCACAACAAATTTT 57.357 38.095 0.00 0.00 0.00 1.82
2040 2399 6.864342 AGAGAAGCTTGATGAAATTTGGATG 58.136 36.000 2.10 0.00 0.00 3.51
2049 2408 3.388308 TGAAATTTGGATGTTGGCAACG 58.612 40.909 24.03 0.00 42.51 4.10
2082 2441 3.225940 CTTCAAGGCCTCCTGAACTTTT 58.774 45.455 14.68 0.00 32.13 2.27
2086 2445 0.875059 GGCCTCCTGAACTTTTCACG 59.125 55.000 0.00 0.00 35.46 4.35
2096 2455 5.379732 TGAACTTTTCACGTTTTCCTTGT 57.620 34.783 0.00 0.00 34.08 3.16
2101 2460 5.644636 ACTTTTCACGTTTTCCTTGTAGACA 59.355 36.000 0.00 0.00 0.00 3.41
2130 2489 0.397957 TGAGGGGCGCTATGTCCTTA 60.398 55.000 7.64 1.15 44.07 2.69
2131 2490 0.318762 GAGGGGCGCTATGTCCTTAG 59.681 60.000 7.64 0.00 44.07 2.18
2136 2495 2.640184 GGCGCTATGTCCTTAGGTTTT 58.360 47.619 7.64 0.00 0.00 2.43
2141 2500 5.405873 GCGCTATGTCCTTAGGTTTTCTATC 59.594 44.000 0.00 0.00 0.00 2.08
2149 2508 9.753674 TGTCCTTAGGTTTTCTATCATTCATTT 57.246 29.630 0.00 0.00 0.00 2.32
2158 2517 7.823745 TTTCTATCATTCATTTTAGGGGAGC 57.176 36.000 0.00 0.00 0.00 4.70
2256 2615 4.691326 TTGTACTCATGGGTGTGTTGTA 57.309 40.909 8.99 0.00 34.24 2.41
2322 2681 6.238842 CGATGCAAATCTTATTTCATGGGTCT 60.239 38.462 0.00 0.00 0.00 3.85
2377 2736 5.843673 TTGTTTTGCTCATCTGTTGGTTA 57.156 34.783 0.00 0.00 0.00 2.85
2378 2737 5.843673 TGTTTTGCTCATCTGTTGGTTAA 57.156 34.783 0.00 0.00 0.00 2.01
2379 2738 6.403866 TGTTTTGCTCATCTGTTGGTTAAT 57.596 33.333 0.00 0.00 0.00 1.40
2380 2739 6.815089 TGTTTTGCTCATCTGTTGGTTAATT 58.185 32.000 0.00 0.00 0.00 1.40
2381 2740 6.700960 TGTTTTGCTCATCTGTTGGTTAATTG 59.299 34.615 0.00 0.00 0.00 2.32
2382 2741 4.439305 TGCTCATCTGTTGGTTAATTGC 57.561 40.909 0.00 0.00 0.00 3.56
2383 2742 3.825585 TGCTCATCTGTTGGTTAATTGCA 59.174 39.130 0.00 0.00 0.00 4.08
2628 2995 1.148310 CCGCTCATCACAAAAGACGT 58.852 50.000 0.00 0.00 0.00 4.34
2675 3046 1.265095 GTTCGGCGATCGGATGTAGTA 59.735 52.381 18.30 0.00 39.77 1.82
2678 3049 1.199327 CGGCGATCGGATGTAGTATGT 59.801 52.381 18.30 0.00 34.75 2.29
2803 3177 2.593436 CTTCGGTGTTGGGCGGTT 60.593 61.111 0.00 0.00 0.00 4.44
2849 3241 2.509336 CGTGGAGGCGTCATCACC 60.509 66.667 8.91 0.00 0.00 4.02
2947 3384 4.769063 CCGCCATGTACCACGCCA 62.769 66.667 0.00 0.00 0.00 5.69
3515 3967 2.963371 GCGACCTCCTCAACGACT 59.037 61.111 0.00 0.00 0.00 4.18
3622 4075 4.373116 GGGGTCGACGAGCTTGCA 62.373 66.667 24.62 0.00 0.00 4.08
3716 4169 2.416747 CAGACGACTTTCCATGCTTCA 58.583 47.619 0.00 0.00 0.00 3.02
3754 4207 3.134127 GGACGCCCACTTGATGCC 61.134 66.667 0.00 0.00 0.00 4.40
3857 4337 2.125229 TCCTCGTCGTCCTCCTCG 60.125 66.667 0.00 0.00 0.00 4.63
4907 5559 6.014242 TGGAGATGCTCTAACCACAATATAGG 60.014 42.308 0.00 0.00 0.00 2.57
4931 5583 9.263446 AGGGCCGTATGACTAATAATATTAAGA 57.737 33.333 0.00 0.00 0.00 2.10
4957 5609 7.956420 TTTAGTCACATAGTTGAACGAACAT 57.044 32.000 0.00 0.00 36.98 2.71
4970 5622 7.173907 AGTTGAACGAACATGAAAGAATCAGAT 59.826 33.333 0.00 0.00 35.21 2.90
4971 5623 7.439157 TGAACGAACATGAAAGAATCAGATT 57.561 32.000 0.00 0.00 42.53 2.40
4972 5624 7.874940 TGAACGAACATGAAAGAATCAGATTT 58.125 30.769 0.00 0.00 42.53 2.17
4973 5625 8.352201 TGAACGAACATGAAAGAATCAGATTTT 58.648 29.630 0.00 0.00 42.53 1.82
4974 5626 9.185192 GAACGAACATGAAAGAATCAGATTTTT 57.815 29.630 0.00 0.00 42.53 1.94
5030 5682 8.355913 AGATTCTCCAAGACAAAGAAAAACATC 58.644 33.333 0.00 0.00 33.10 3.06
5043 5695 9.185192 CAAAGAAAAACATCTATCTTGAACACC 57.815 33.333 0.00 0.00 32.72 4.16
5061 5713 8.586570 TGAACACCAATTTTAAATTAGCACAG 57.413 30.769 2.37 0.00 0.00 3.66
5173 5825 8.041143 AGTATTACCCAAGTAATAGCATTCCA 57.959 34.615 6.03 0.00 46.93 3.53
5176 5828 5.450818 ACCCAAGTAATAGCATTCCAAGA 57.549 39.130 0.00 0.00 0.00 3.02
5184 5836 8.045176 AGTAATAGCATTCCAAGAAAACTCAC 57.955 34.615 0.00 0.00 0.00 3.51
5189 5841 5.987347 AGCATTCCAAGAAAACTCACAAATG 59.013 36.000 0.00 0.00 0.00 2.32
5190 5842 5.984926 GCATTCCAAGAAAACTCACAAATGA 59.015 36.000 0.00 0.00 0.00 2.57
5194 5846 7.111247 TCCAAGAAAACTCACAAATGATGTT 57.889 32.000 0.00 0.00 41.46 2.71
5537 6198 2.431782 CCACATGGGGAAAATCATCACC 59.568 50.000 8.91 0.00 43.65 4.02
5912 6589 4.435253 GCGTTTGTTGTCTCTGATGATCAG 60.435 45.833 16.15 16.15 45.59 2.90
5933 6610 3.267291 AGAAGCTAGACTGGTCTGACCTA 59.733 47.826 26.03 12.54 40.71 3.08
6028 6728 5.163814 GGTCAGACTGTGTATGCTTGAAATC 60.164 44.000 1.59 0.00 0.00 2.17
6033 6733 6.591834 AGACTGTGTATGCTTGAAATCTGTAC 59.408 38.462 0.00 0.00 0.00 2.90
6136 6840 8.729805 AACTCAAGTTGAATCCAGATTAGATC 57.270 34.615 7.06 0.00 36.80 2.75
6269 6983 6.421501 TGTGTGACATTCAAAGCATGATTTTC 59.578 34.615 6.13 2.19 38.03 2.29
6307 7038 9.679661 TTTCCTTATGCATATGAACTACTTTGA 57.320 29.630 18.58 3.97 0.00 2.69
6514 7254 6.539173 TCAAGGCACCCGTTTATATTCATAT 58.461 36.000 0.00 0.00 0.00 1.78
6650 7436 7.575414 TTTGTTACCTTTATTGCTGAGTTCA 57.425 32.000 0.00 0.00 0.00 3.18
6747 7536 5.337578 TCCAGAAAACAAACAAAGGGAAG 57.662 39.130 0.00 0.00 0.00 3.46
6848 7648 7.016361 AGCAGCTAAGTTTTTATATGGTTCG 57.984 36.000 0.00 0.00 0.00 3.95
6857 7657 7.046033 AGTTTTTATATGGTTCGAGGTACTGG 58.954 38.462 0.00 0.00 41.55 4.00
6896 7697 2.355756 CGGGGATCATACAAGCAACAAG 59.644 50.000 0.00 0.00 0.00 3.16
7307 8455 1.418264 TGGATTCCTGTGAAACCACGA 59.582 47.619 3.95 0.00 45.42 4.35
7410 8558 9.860898 AATCAATTCAAGGCTTACAAATAGAAC 57.139 29.630 0.00 0.00 0.00 3.01
7415 8563 9.905713 ATTCAAGGCTTACAAATAGAACATCTA 57.094 29.630 0.00 0.00 32.87 1.98
7446 8594 8.099364 TGGATTTCTCTCAAAGTAATTGTCAC 57.901 34.615 0.00 0.00 40.11 3.67
7452 8600 8.256611 TCTCTCAAAGTAATTGTCACATAAGC 57.743 34.615 0.00 0.00 40.11 3.09
7673 8838 8.091449 ACCTGAAATAGTGAAAGTACTTCTCAG 58.909 37.037 8.95 10.11 34.86 3.35
7830 9001 3.189080 CGAATCAAACAAGTGAGGCATCA 59.811 43.478 0.00 0.00 0.00 3.07
7917 9089 9.986833 GTTGAAGAAAACACTAATTGCAATTTT 57.013 25.926 28.45 16.61 0.00 1.82
7981 9205 0.546122 TGCCAGCGGGATCAAGTTAT 59.454 50.000 7.23 0.00 35.59 1.89
8121 9352 2.327325 TTCTAGAGAGCAGGGTTGGT 57.673 50.000 0.00 0.00 37.84 3.67
8635 10422 5.641789 TCTCATCAGGACCAATCAATGAT 57.358 39.130 0.00 0.00 34.68 2.45
8773 10561 1.344114 GTTCCAAGCCATCCAAGCAAA 59.656 47.619 0.00 0.00 0.00 3.68
8774 10562 1.941377 TCCAAGCCATCCAAGCAAAT 58.059 45.000 0.00 0.00 0.00 2.32
8783 10571 0.407528 TCCAAGCAAATAGGGTGGCA 59.592 50.000 0.00 0.00 0.00 4.92
8828 10616 5.867903 AGACTGAGAATAGAACCATCCTG 57.132 43.478 0.00 0.00 0.00 3.86
8847 10635 2.632512 CTGTTAGCCACCCAACCAATTT 59.367 45.455 0.00 0.00 0.00 1.82
8878 10666 8.445193 ACTTATTTCGTTTAACTGAGACTACG 57.555 34.615 0.00 0.00 0.00 3.51
8884 10672 4.251268 GTTTAACTGAGACTACGGCCATT 58.749 43.478 2.24 0.00 0.00 3.16
8901 10690 5.104374 GGCCATTTCATTATGTTCACACTG 58.896 41.667 0.00 0.00 0.00 3.66
8912 10701 4.842531 TGTTCACACTGGGATCATGTAT 57.157 40.909 0.00 0.00 0.00 2.29
8956 10745 1.078709 GCGCACTTCTATTGTCTGCA 58.921 50.000 0.30 0.00 0.00 4.41
9017 10806 4.874970 AGTTGAAGAAACACCAATGCATC 58.125 39.130 0.00 0.00 41.61 3.91
9023 10812 6.479660 TGAAGAAACACCAATGCATCTTTTTC 59.520 34.615 0.00 5.50 35.37 2.29
9070 10859 1.478631 AGATGACACTGATGCCGAGA 58.521 50.000 0.00 0.00 0.00 4.04
9090 10879 5.123027 CGAGAAAAAGAAGAGGAATTCCAGG 59.877 44.000 26.22 0.00 38.89 4.45
9102 10891 4.079327 AGGAATTCCAGGCTTTGATGAGAT 60.079 41.667 26.22 0.00 38.89 2.75
9103 10892 5.133322 AGGAATTCCAGGCTTTGATGAGATA 59.867 40.000 26.22 0.00 38.89 1.98
9104 10893 5.829924 GGAATTCCAGGCTTTGATGAGATAA 59.170 40.000 20.04 0.00 35.64 1.75
9105 10894 6.016443 GGAATTCCAGGCTTTGATGAGATAAG 60.016 42.308 20.04 0.00 35.64 1.73
9106 10895 5.441718 TTCCAGGCTTTGATGAGATAAGT 57.558 39.130 0.00 0.00 0.00 2.24
9107 10896 5.441718 TCCAGGCTTTGATGAGATAAGTT 57.558 39.130 0.00 0.00 0.00 2.66
9108 10897 5.819991 TCCAGGCTTTGATGAGATAAGTTT 58.180 37.500 0.00 0.00 0.00 2.66
9109 10898 6.248433 TCCAGGCTTTGATGAGATAAGTTTT 58.752 36.000 0.00 0.00 0.00 2.43
9110 10899 6.721208 TCCAGGCTTTGATGAGATAAGTTTTT 59.279 34.615 0.00 0.00 0.00 1.94
9111 10900 7.031975 CCAGGCTTTGATGAGATAAGTTTTTC 58.968 38.462 0.00 0.00 0.00 2.29
9112 10901 7.309377 CCAGGCTTTGATGAGATAAGTTTTTCA 60.309 37.037 0.00 0.00 0.00 2.69
9113 10902 8.248945 CAGGCTTTGATGAGATAAGTTTTTCAT 58.751 33.333 0.00 0.00 33.23 2.57
9114 10903 9.466497 AGGCTTTGATGAGATAAGTTTTTCATA 57.534 29.630 0.00 0.00 30.85 2.15
9165 10955 8.657387 TGGAAATAAATGTTTAGGATGTTGGA 57.343 30.769 0.00 0.00 0.00 3.53
9188 10978 3.575965 ATTTGGACTGTTCGAAATGGC 57.424 42.857 0.00 0.00 38.38 4.40
9207 10997 9.727627 GAAATGGCAAAATTGTTACAAATGAAA 57.272 25.926 0.66 0.00 0.00 2.69
9277 11067 9.343539 GATACTTTTGAGCCATAGATTAAAGGT 57.656 33.333 0.00 0.00 0.00 3.50
9284 11074 9.920946 TTGAGCCATAGATTAAAGGTTAAGAAT 57.079 29.630 0.00 0.00 0.00 2.40
9293 11083 9.331282 AGATTAAAGGTTAAGAATTCGAGATGG 57.669 33.333 0.00 0.00 0.00 3.51
9325 11115 3.148412 TGAACACCCATCTGTGATGTTG 58.852 45.455 6.78 6.02 39.57 3.33
9362 11152 6.204882 AGAGTTACATGCTTTGTCTTTACACC 59.795 38.462 0.00 0.00 39.87 4.16
9386 11176 2.505628 AACATGTTCGTGCATTGCAA 57.494 40.000 13.94 0.00 41.47 4.08
9387 11177 1.769733 ACATGTTCGTGCATTGCAAC 58.230 45.000 13.94 8.93 41.47 4.17
9390 11180 1.729131 GTTCGTGCATTGCAACGGG 60.729 57.895 23.51 11.71 41.47 5.28
9391 11181 2.190170 TTCGTGCATTGCAACGGGT 61.190 52.632 23.51 0.00 41.47 5.28
9392 11182 2.399511 TTCGTGCATTGCAACGGGTG 62.400 55.000 23.51 0.00 41.47 4.61
9393 11183 2.727544 GTGCATTGCAACGGGTGT 59.272 55.556 13.94 0.00 41.47 4.16
9395 11185 0.525761 GTGCATTGCAACGGGTGTAT 59.474 50.000 13.94 0.00 41.47 2.29
9397 11187 2.357637 GTGCATTGCAACGGGTGTATAT 59.642 45.455 13.94 0.00 41.47 0.86
9398 11188 3.562141 GTGCATTGCAACGGGTGTATATA 59.438 43.478 13.94 0.00 41.47 0.86
9399 11189 3.562141 TGCATTGCAACGGGTGTATATAC 59.438 43.478 9.33 5.89 34.76 1.47
9401 11191 4.319477 GCATTGCAACGGGTGTATATACAG 60.319 45.833 15.93 7.37 36.78 2.74
9402 11192 4.739587 TTGCAACGGGTGTATATACAGA 57.260 40.909 15.93 0.00 36.78 3.41
9444 15159 3.641437 TTCTTTTCAATCAGCCAACCG 57.359 42.857 0.00 0.00 0.00 4.44
9468 15185 2.876079 GCGGGCCATAGAAGGGAAATAG 60.876 54.545 4.39 0.00 0.00 1.73
9470 15187 3.181443 CGGGCCATAGAAGGGAAATAGTT 60.181 47.826 4.39 0.00 0.00 2.24
9473 15190 5.073280 GGGCCATAGAAGGGAAATAGTTACT 59.927 44.000 4.39 0.00 0.00 2.24
9474 15191 6.271624 GGGCCATAGAAGGGAAATAGTTACTA 59.728 42.308 4.39 0.00 0.00 1.82
9476 15193 7.234988 GGCCATAGAAGGGAAATAGTTACTAGA 59.765 40.741 0.00 0.00 0.00 2.43
9482 15199 9.765295 AGAAGGGAAATAGTTACTAGACTGTTA 57.235 33.333 0.00 0.00 31.77 2.41
9483 15200 9.800433 GAAGGGAAATAGTTACTAGACTGTTAC 57.200 37.037 0.00 0.00 31.77 2.50
9485 15202 9.317827 AGGGAAATAGTTACTAGACTGTTACAA 57.682 33.333 0.00 0.00 31.77 2.41
9500 15217 9.588096 AGACTGTTACAATTATTTTTCTTCCCT 57.412 29.630 0.00 0.00 0.00 4.20
9501 15218 9.841880 GACTGTTACAATTATTTTTCTTCCCTC 57.158 33.333 0.00 0.00 0.00 4.30
9510 15227 9.929180 AATTATTTTTCTTCCCTCTGTTTTAGC 57.071 29.630 0.00 0.00 0.00 3.09
9513 15230 6.783708 TTTTCTTCCCTCTGTTTTAGCAAA 57.216 33.333 0.00 0.00 0.00 3.68
9516 15233 6.182507 TCTTCCCTCTGTTTTAGCAAACTA 57.817 37.500 1.86 0.00 42.61 2.24
9517 15234 6.231211 TCTTCCCTCTGTTTTAGCAAACTAG 58.769 40.000 1.86 0.00 42.61 2.57
9518 15235 4.324267 TCCCTCTGTTTTAGCAAACTAGC 58.676 43.478 1.86 0.00 42.61 3.42
9519 15236 4.072131 CCCTCTGTTTTAGCAAACTAGCA 58.928 43.478 1.86 0.00 42.61 3.49
9520 15237 4.518970 CCCTCTGTTTTAGCAAACTAGCAA 59.481 41.667 1.86 0.00 42.61 3.91
9521 15238 5.452777 CCTCTGTTTTAGCAAACTAGCAAC 58.547 41.667 1.86 0.00 42.61 4.17
9523 15240 6.294176 CCTCTGTTTTAGCAAACTAGCAACAT 60.294 38.462 1.86 0.00 42.61 2.71
9524 15241 6.437928 TCTGTTTTAGCAAACTAGCAACATG 58.562 36.000 0.00 0.00 42.61 3.21
9530 15247 7.692908 TTAGCAAACTAGCAACATGTTTTTC 57.307 32.000 8.77 1.22 36.85 2.29
9531 15248 5.049828 AGCAAACTAGCAACATGTTTTTCC 58.950 37.500 8.77 0.00 36.85 3.13
9533 15250 5.175673 GCAAACTAGCAACATGTTTTTCCTC 59.824 40.000 8.77 0.00 32.42 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.824109 AAGAATGTCGGAGATCGCCA 59.176 50.000 16.29 0.00 40.67 5.69
2 3 1.492720 GAAGAATGTCGGAGATCGCC 58.507 55.000 5.23 5.23 40.67 5.54
24 25 1.354337 CGAATCCGCTATCCGCCATG 61.354 60.000 0.00 0.00 35.03 3.66
30 31 3.796667 GGAGTCGAATCCGCTATCC 57.203 57.895 17.19 0.00 35.37 2.59
43 45 1.135333 GGATCAAGAGTGGTCGGAGTC 59.865 57.143 0.00 0.00 35.52 3.36
76 78 2.406559 CTCCTCCTCACATGGGAAGAT 58.593 52.381 0.00 0.00 31.92 2.40
77 79 1.623557 CCTCCTCCTCACATGGGAAGA 60.624 57.143 0.00 0.00 31.92 2.87
78 80 0.835941 CCTCCTCCTCACATGGGAAG 59.164 60.000 0.00 0.00 31.92 3.46
79 81 0.621571 CCCTCCTCCTCACATGGGAA 60.622 60.000 0.00 0.00 36.90 3.97
80 82 1.003442 CCCTCCTCCTCACATGGGA 59.997 63.158 0.00 0.00 36.90 4.37
83 85 2.503061 CGCCCTCCTCCTCACATG 59.497 66.667 0.00 0.00 0.00 3.21
84 86 3.474570 GCGCCCTCCTCCTCACAT 61.475 66.667 0.00 0.00 0.00 3.21
154 175 4.865761 TTCGGCGGATTCGAGCGG 62.866 66.667 7.21 4.66 37.93 5.52
205 226 3.195002 CATACGCCTGTGCACCGG 61.195 66.667 21.93 21.93 37.32 5.28
213 234 2.540515 CCTGTAACACTCATACGCCTG 58.459 52.381 0.00 0.00 0.00 4.85
293 314 4.776322 TCCGCCTCCGCCATGTTG 62.776 66.667 0.00 0.00 0.00 3.33
294 315 4.473520 CTCCGCCTCCGCCATGTT 62.474 66.667 0.00 0.00 0.00 2.71
309 330 4.664677 AGTGTGCGACGCCACCTC 62.665 66.667 26.93 16.41 34.85 3.85
310 331 4.969196 CAGTGTGCGACGCCACCT 62.969 66.667 26.93 14.60 34.85 4.00
317 338 4.357947 TCCGAGGCAGTGTGCGAC 62.358 66.667 0.00 0.00 46.21 5.19
318 339 4.357947 GTCCGAGGCAGTGTGCGA 62.358 66.667 0.00 0.00 46.21 5.10
320 341 4.357947 TCGTCCGAGGCAGTGTGC 62.358 66.667 0.00 0.00 44.08 4.57
321 342 2.126307 CTCGTCCGAGGCAGTGTG 60.126 66.667 8.80 0.00 38.51 3.82
334 355 1.068741 GGACACAGACAACTTCCTCGT 59.931 52.381 0.00 0.00 0.00 4.18
347 368 0.798776 GTTTGAGGATGCGGACACAG 59.201 55.000 0.00 0.00 0.00 3.66
355 376 2.093216 CTCTGCCGTTTGAGGATGC 58.907 57.895 0.00 0.00 0.00 3.91
369 390 2.720758 CGCGCGTGTTTCTCCTCTG 61.721 63.158 24.19 0.00 0.00 3.35
384 405 1.507713 CACATTGTCGAAGTGCGCG 60.508 57.895 0.00 0.00 40.61 6.86
397 713 0.327924 TCAACCCGGATCTGCACATT 59.672 50.000 0.73 0.00 0.00 2.71
411 727 3.372822 TCGAAGCGTAAAATGGATCAACC 59.627 43.478 0.00 0.00 39.54 3.77
461 778 0.605319 CCTTGCCCTTGCTGACGTTA 60.605 55.000 0.00 0.00 38.71 3.18
544 864 4.449068 CCGGCAACTACATCAATACATCTC 59.551 45.833 0.00 0.00 0.00 2.75
546 875 4.211374 GTCCGGCAACTACATCAATACATC 59.789 45.833 0.00 0.00 0.00 3.06
585 914 7.093727 ACCATATGCATCGTAAACTAGCTCTAT 60.094 37.037 0.19 0.00 0.00 1.98
600 929 7.660112 TCCAAATTCATACAACCATATGCATC 58.340 34.615 0.19 0.00 33.31 3.91
640 969 5.986501 TTTTTATTTTCACAGCCGGGTAT 57.013 34.783 5.47 0.00 0.00 2.73
644 973 5.632959 TCGTATTTTTATTTTCACAGCCGG 58.367 37.500 0.00 0.00 0.00 6.13
645 974 5.737290 CCTCGTATTTTTATTTTCACAGCCG 59.263 40.000 0.00 0.00 0.00 5.52
646 975 6.033966 CCCTCGTATTTTTATTTTCACAGCC 58.966 40.000 0.00 0.00 0.00 4.85
647 976 6.033966 CCCCTCGTATTTTTATTTTCACAGC 58.966 40.000 0.00 0.00 0.00 4.40
648 977 7.027161 CACCCCTCGTATTTTTATTTTCACAG 58.973 38.462 0.00 0.00 0.00 3.66
651 980 6.943718 ACTCACCCCTCGTATTTTTATTTTCA 59.056 34.615 0.00 0.00 0.00 2.69
653 982 8.899771 CATACTCACCCCTCGTATTTTTATTTT 58.100 33.333 0.00 0.00 0.00 1.82
654 983 8.050930 ACATACTCACCCCTCGTATTTTTATTT 58.949 33.333 0.00 0.00 0.00 1.40
655 984 7.497909 CACATACTCACCCCTCGTATTTTTATT 59.502 37.037 0.00 0.00 0.00 1.40
656 985 6.990349 CACATACTCACCCCTCGTATTTTTAT 59.010 38.462 0.00 0.00 0.00 1.40
657 986 6.342906 CACATACTCACCCCTCGTATTTTTA 58.657 40.000 0.00 0.00 0.00 1.52
659 988 4.383770 CCACATACTCACCCCTCGTATTTT 60.384 45.833 0.00 0.00 0.00 1.82
660 989 3.134081 CCACATACTCACCCCTCGTATTT 59.866 47.826 0.00 0.00 0.00 1.40
661 990 2.698797 CCACATACTCACCCCTCGTATT 59.301 50.000 0.00 0.00 0.00 1.89
664 993 1.614241 GCCACATACTCACCCCTCGT 61.614 60.000 0.00 0.00 0.00 4.18
665 994 1.144057 GCCACATACTCACCCCTCG 59.856 63.158 0.00 0.00 0.00 4.63
666 995 0.179000 CAGCCACATACTCACCCCTC 59.821 60.000 0.00 0.00 0.00 4.30
667 996 0.547712 ACAGCCACATACTCACCCCT 60.548 55.000 0.00 0.00 0.00 4.79
669 998 2.108168 TCTACAGCCACATACTCACCC 58.892 52.381 0.00 0.00 0.00 4.61
670 999 3.722147 CATCTACAGCCACATACTCACC 58.278 50.000 0.00 0.00 0.00 4.02
671 1000 3.126831 GCATCTACAGCCACATACTCAC 58.873 50.000 0.00 0.00 0.00 3.51
672 1001 3.033909 AGCATCTACAGCCACATACTCA 58.966 45.455 0.00 0.00 0.00 3.41
673 1002 3.648009 GAGCATCTACAGCCACATACTC 58.352 50.000 0.00 0.00 0.00 2.59
674 1003 3.742433 GAGCATCTACAGCCACATACT 57.258 47.619 0.00 0.00 0.00 2.12
743 1097 3.048337 TGTGTTTGGACTTACCGATCC 57.952 47.619 0.00 0.00 42.61 3.36
830 1184 3.544651 CTGTGCTGTGATGTTTGTTACG 58.455 45.455 0.00 0.00 0.00 3.18
879 1233 9.678941 CGTATAGTAGATTGTTAATTGAGCTGA 57.321 33.333 0.00 0.00 0.00 4.26
901 1258 9.917887 AGGCTATTATATAGGAGTAACACGTAT 57.082 33.333 0.00 0.00 0.00 3.06
902 1259 9.170734 CAGGCTATTATATAGGAGTAACACGTA 57.829 37.037 0.00 0.00 0.00 3.57
903 1260 7.886970 TCAGGCTATTATATAGGAGTAACACGT 59.113 37.037 0.00 0.00 0.00 4.49
904 1261 8.277490 TCAGGCTATTATATAGGAGTAACACG 57.723 38.462 0.00 0.00 0.00 4.49
906 1263 9.121658 CGATCAGGCTATTATATAGGAGTAACA 57.878 37.037 0.00 0.00 0.00 2.41
907 1264 9.339850 TCGATCAGGCTATTATATAGGAGTAAC 57.660 37.037 0.00 0.00 0.00 2.50
909 1266 9.508642 CATCGATCAGGCTATTATATAGGAGTA 57.491 37.037 0.00 0.00 0.00 2.59
910 1267 7.450014 CCATCGATCAGGCTATTATATAGGAGT 59.550 40.741 0.00 0.00 0.00 3.85
911 1268 7.825681 CCATCGATCAGGCTATTATATAGGAG 58.174 42.308 0.00 0.00 0.00 3.69
912 1269 7.767250 CCATCGATCAGGCTATTATATAGGA 57.233 40.000 0.00 0.00 0.00 2.94
1159 1516 3.692406 GTGCTCGGGGAGAACGGT 61.692 66.667 0.00 0.00 27.63 4.83
1221 1578 1.747367 CTCTGCCTCGACGGACTCT 60.747 63.158 5.24 0.00 33.16 3.24
1479 1837 3.492482 CCAAAGAAATGCACGGGTCTTTT 60.492 43.478 11.15 0.00 38.05 2.27
1500 1858 6.348458 GCTTATCTTTTGGGCAATTTGAAACC 60.348 38.462 0.00 0.00 0.00 3.27
1522 1880 1.289160 TGGCCTCTCTAACCATGCTT 58.711 50.000 3.32 0.00 0.00 3.91
1628 1986 4.039488 GCATGATGAAAGGATGGCCATAAA 59.961 41.667 20.84 0.83 36.29 1.40
1738 2096 3.202097 CCAAAAACGACTGGCCAATTTT 58.798 40.909 7.01 8.77 0.00 1.82
1753 2111 0.039035 ACGGATAGGCTGGCCAAAAA 59.961 50.000 7.01 0.00 38.92 1.94
1754 2112 0.679640 CACGGATAGGCTGGCCAAAA 60.680 55.000 7.01 0.00 38.92 2.44
1755 2113 1.077787 CACGGATAGGCTGGCCAAA 60.078 57.895 7.01 1.82 38.92 3.28
1812 2170 2.820845 GGCCCCGCCTAAAATCAAT 58.179 52.632 0.00 0.00 46.69 2.57
1859 2217 4.973055 TTGGCACCGTCCGTTCCG 62.973 66.667 0.00 0.00 0.00 4.30
1980 2338 3.643199 AAATTTGTTGTGCTTGGGGTT 57.357 38.095 0.00 0.00 0.00 4.11
1981 2339 3.643199 AAAATTTGTTGTGCTTGGGGT 57.357 38.095 0.00 0.00 0.00 4.95
2001 2359 4.130118 GCTTCTCTCTTGACCACTTTCAA 58.870 43.478 0.00 0.00 34.30 2.69
2049 2408 3.386867 CTTGAAGGATGCGGCGTGC 62.387 63.158 9.37 5.47 46.70 5.34
2056 2415 0.750911 CAGGAGGCCTTGAAGGATGC 60.751 60.000 16.93 7.85 37.67 3.91
2082 2441 3.133362 AGGTGTCTACAAGGAAAACGTGA 59.867 43.478 0.00 0.00 32.54 4.35
2086 2445 7.739498 TTTATGAGGTGTCTACAAGGAAAAC 57.261 36.000 0.00 0.00 0.00 2.43
2122 2481 9.927081 AATGAATGATAGAAAACCTAAGGACAT 57.073 29.630 0.00 0.00 0.00 3.06
2130 2489 8.343787 TCCCCTAAAATGAATGATAGAAAACCT 58.656 33.333 0.00 0.00 0.00 3.50
2131 2490 8.533569 TCCCCTAAAATGAATGATAGAAAACC 57.466 34.615 0.00 0.00 0.00 3.27
2136 2495 5.222130 GGGCTCCCCTAAAATGAATGATAGA 60.222 44.000 0.00 0.00 41.34 1.98
2185 2544 2.908073 AACTTCTTTGCGCCCGCTG 61.908 57.895 14.13 4.66 42.51 5.18
2205 2564 6.035975 TGTTACTCTCGTGTCATAATTGCATG 59.964 38.462 0.00 0.00 0.00 4.06
2230 2589 6.127196 ACAACACACCCATGAGTACAAAAATT 60.127 34.615 0.00 0.00 0.00 1.82
2232 2591 4.707448 ACAACACACCCATGAGTACAAAAA 59.293 37.500 0.00 0.00 0.00 1.94
2283 2642 8.893219 AGATTTGCATCGTCTATTGATTAAGA 57.107 30.769 0.00 0.00 34.17 2.10
2290 2649 9.888878 ATGAAATAAGATTTGCATCGTCTATTG 57.111 29.630 0.00 0.00 34.17 1.90
2294 2653 6.238842 CCCATGAAATAAGATTTGCATCGTCT 60.239 38.462 0.00 0.00 34.17 4.18
2296 2655 5.360714 ACCCATGAAATAAGATTTGCATCGT 59.639 36.000 0.00 0.00 34.17 3.73
2297 2656 5.835257 ACCCATGAAATAAGATTTGCATCG 58.165 37.500 0.00 0.00 34.17 3.84
2300 2659 9.639563 TTATAGACCCATGAAATAAGATTTGCA 57.360 29.630 0.00 0.00 0.00 4.08
2332 2691 9.308318 ACAAAATTTGTTTGCTTTTCGTAGTAT 57.692 25.926 5.41 0.00 42.22 2.12
2333 2692 8.690680 ACAAAATTTGTTTGCTTTTCGTAGTA 57.309 26.923 5.41 0.00 42.22 1.82
2334 2693 7.589574 ACAAAATTTGTTTGCTTTTCGTAGT 57.410 28.000 5.41 0.00 42.22 2.73
2353 2712 5.083533 ACCAACAGATGAGCAAAACAAAA 57.916 34.783 0.00 0.00 0.00 2.44
2367 2726 4.278170 CCAAGTCTGCAATTAACCAACAGA 59.722 41.667 0.00 0.00 35.11 3.41
2369 2728 3.957497 ACCAAGTCTGCAATTAACCAACA 59.043 39.130 0.00 0.00 0.00 3.33
2383 2742 1.771255 AGAGGCAAACAGACCAAGTCT 59.229 47.619 0.00 0.00 44.44 3.24
2397 2756 7.256332 GGTCCATAATCTCAAGTAATAGAGGCA 60.256 40.741 0.00 0.00 32.76 4.75
2443 2802 6.128145 GGAGATGCTCTTAGGAACAAAGTTTC 60.128 42.308 0.00 0.00 0.00 2.78
2447 2806 4.836825 TGGAGATGCTCTTAGGAACAAAG 58.163 43.478 0.00 0.00 0.00 2.77
2448 2807 4.836825 CTGGAGATGCTCTTAGGAACAAA 58.163 43.478 0.00 0.00 0.00 2.83
2449 2808 3.369892 GCTGGAGATGCTCTTAGGAACAA 60.370 47.826 0.00 0.00 0.00 2.83
2450 2809 2.169352 GCTGGAGATGCTCTTAGGAACA 59.831 50.000 0.00 0.00 0.00 3.18
2451 2810 2.484594 GGCTGGAGATGCTCTTAGGAAC 60.485 54.545 0.00 0.00 0.00 3.62
2481 2840 1.738830 CTTTTTACGCGCCCTCGGA 60.739 57.895 5.73 0.00 35.95 4.55
2484 2843 1.424240 GCTCTTTTTACGCGCCCTC 59.576 57.895 5.73 0.00 0.00 4.30
2492 2851 1.313091 CCCCAGGCCGCTCTTTTTAC 61.313 60.000 0.00 0.00 0.00 2.01
2628 2995 1.080093 GTGATCGCCGGACTTGTGA 60.080 57.895 5.05 0.00 0.00 3.58
2743 3117 4.129737 CACGCCGACTCCACCGAT 62.130 66.667 0.00 0.00 0.00 4.18
2781 3155 3.365265 CCCAACACCGAAGCAGCC 61.365 66.667 0.00 0.00 0.00 4.85
2881 3279 1.105167 ACGACGGTGACTCCAACTCA 61.105 55.000 0.00 0.00 35.57 3.41
2947 3384 1.153745 GCACCGACGAGAAGCTCAT 60.154 57.895 0.00 0.00 0.00 2.90
3515 3967 0.038435 CGTGCAACAAATGGCATGGA 60.038 50.000 0.00 0.00 42.75 3.41
3622 4075 0.108615 CAAGGCCGAGTTCGATGAGT 60.109 55.000 2.59 0.00 43.02 3.41
3857 4337 2.730524 GGAGGAGCAGGAGCAGGAC 61.731 68.421 0.00 0.00 45.49 3.85
3991 4483 2.739609 GCTGACATGGACGACATCATCA 60.740 50.000 0.00 0.00 37.84 3.07
4684 5297 3.062466 CCCTGTCGGCGAGTCTGA 61.062 66.667 11.20 0.00 0.00 3.27
4752 5389 4.711949 CAGGCAGAACCCAGCGCT 62.712 66.667 2.64 2.64 40.58 5.92
4929 5581 8.709646 GTTCGTTCAACTATGTGACTAAAATCT 58.290 33.333 0.00 0.00 31.50 2.40
4930 5582 8.492748 TGTTCGTTCAACTATGTGACTAAAATC 58.507 33.333 0.00 0.00 35.79 2.17
4931 5583 8.373048 TGTTCGTTCAACTATGTGACTAAAAT 57.627 30.769 0.00 0.00 35.79 1.82
4932 5584 7.773864 TGTTCGTTCAACTATGTGACTAAAA 57.226 32.000 0.00 0.00 35.79 1.52
4933 5585 7.654116 TCATGTTCGTTCAACTATGTGACTAAA 59.346 33.333 0.00 0.00 35.79 1.85
4934 5586 7.149307 TCATGTTCGTTCAACTATGTGACTAA 58.851 34.615 0.00 0.00 35.79 2.24
4935 5587 6.683715 TCATGTTCGTTCAACTATGTGACTA 58.316 36.000 0.00 0.00 35.79 2.59
4936 5588 5.538118 TCATGTTCGTTCAACTATGTGACT 58.462 37.500 0.00 0.00 35.79 3.41
4937 5589 5.839262 TCATGTTCGTTCAACTATGTGAC 57.161 39.130 0.00 0.00 35.79 3.67
4938 5590 6.704050 TCTTTCATGTTCGTTCAACTATGTGA 59.296 34.615 0.00 0.00 35.79 3.58
5005 5657 8.355913 AGATGTTTTTCTTTGTCTTGGAGAATC 58.644 33.333 0.00 0.00 30.26 2.52
5142 5794 9.991906 TGCTATTACTTGGGTAATACTTATGAC 57.008 33.333 4.98 0.00 44.11 3.06
5148 5800 8.041143 TGGAATGCTATTACTTGGGTAATACT 57.959 34.615 4.98 0.00 44.11 2.12
5154 5806 5.450818 TCTTGGAATGCTATTACTTGGGT 57.549 39.130 0.00 0.00 0.00 4.51
5167 5819 7.654520 ACATCATTTGTGAGTTTTCTTGGAATG 59.345 33.333 0.00 0.00 37.11 2.67
5173 5825 9.301153 GTTACAACATCATTTGTGAGTTTTCTT 57.699 29.630 0.00 0.00 40.04 2.52
5176 5828 8.994429 TTGTTACAACATCATTTGTGAGTTTT 57.006 26.923 0.00 0.00 40.04 2.43
5537 6198 8.697846 ATCAAAGCAATATGACAAATGAAGTG 57.302 30.769 0.00 0.00 0.00 3.16
5795 6472 8.155821 AGAACTTCTGAATATCATGCTTGATG 57.844 34.615 21.89 7.70 42.60 3.07
5912 6589 2.452505 AGGTCAGACCAGTCTAGCTTC 58.547 52.381 22.31 0.00 41.95 3.86
5933 6610 2.829384 TTGGGCGAAGAGGGCAAGT 61.829 57.895 0.00 0.00 0.00 3.16
6028 6728 5.240183 CCTGCCATTTCTTATCCATGTACAG 59.760 44.000 0.33 0.00 0.00 2.74
6033 6733 5.857471 TTTCCTGCCATTTCTTATCCATG 57.143 39.130 0.00 0.00 0.00 3.66
6514 7254 6.708949 CCTAGTTAGGAGTAAAACAGTTTGCA 59.291 38.462 0.00 0.00 46.63 4.08
6747 7536 7.202016 TGTCAGAAAACTCAATGTCCATTAC 57.798 36.000 0.00 0.00 0.00 1.89
6848 7648 1.534729 CCTTTGTTGGCCAGTACCTC 58.465 55.000 5.11 0.00 0.00 3.85
6896 7697 8.442384 CAAATACAAATAACAAGCCCAATTGTC 58.558 33.333 4.43 0.00 42.49 3.18
7307 8455 3.701205 TTCACCAGTAGTGCATCATGT 57.299 42.857 0.00 0.00 46.81 3.21
7410 8558 5.608449 TGAGAGAAATCCATGCACTAGATG 58.392 41.667 0.00 0.00 0.00 2.90
7415 8563 4.660168 ACTTTGAGAGAAATCCATGCACT 58.340 39.130 0.00 0.00 0.00 4.40
7524 8677 8.893563 TGGATTTTGTAATTAAGTGGGAAGAT 57.106 30.769 0.00 0.00 0.00 2.40
7580 8741 0.102120 ATTTGGTGTTGTGTGCGTGG 59.898 50.000 0.00 0.00 0.00 4.94
7673 8838 7.470289 AATAGTGACGTGATCTTCAATAAGC 57.530 36.000 0.00 0.00 29.30 3.09
7809 8980 4.771590 TGATGCCTCACTTGTTTGATTC 57.228 40.909 0.00 0.00 0.00 2.52
7864 9036 9.766277 CATTAATGAAGTTTCTTAGCAGAGTTC 57.234 33.333 10.04 0.00 0.00 3.01
7993 9217 8.711457 GGTAAACTGTTGATCATTTCCAATTTG 58.289 33.333 0.00 0.00 0.00 2.32
8111 9342 4.306600 CTTTGTCAATAAACCAACCCTGC 58.693 43.478 0.00 0.00 0.00 4.85
8121 9352 9.421806 CCATTCAACTATTGCTTTGTCAATAAA 57.578 29.630 0.00 0.00 38.15 1.40
8773 10561 2.316586 CCCCTTGGTGCCACCCTAT 61.317 63.158 12.25 0.00 37.50 2.57
8774 10562 2.938798 CCCCTTGGTGCCACCCTA 60.939 66.667 12.25 0.00 37.50 3.53
8783 10571 2.367947 ATTCTCTTCTCCCCCTTGGT 57.632 50.000 0.00 0.00 34.77 3.67
8818 10606 1.682087 GGGTGGCTAACAGGATGGTTC 60.682 57.143 0.00 0.00 43.62 3.62
8823 10611 0.331616 GGTTGGGTGGCTAACAGGAT 59.668 55.000 0.00 0.00 0.00 3.24
8828 10616 3.762407 AAAATTGGTTGGGTGGCTAAC 57.238 42.857 0.00 0.00 0.00 2.34
8847 10635 9.545105 TCTCAGTTAAACGAAATAAGTACCAAA 57.455 29.630 0.00 0.00 0.00 3.28
8861 10649 2.257034 GGCCGTAGTCTCAGTTAAACG 58.743 52.381 0.00 0.00 0.00 3.60
8878 10666 5.104374 CAGTGTGAACATAATGAAATGGCC 58.896 41.667 0.00 0.00 0.00 5.36
8884 10672 5.814481 TGATCCCAGTGTGAACATAATGAA 58.186 37.500 1.07 0.00 0.00 2.57
8901 10690 8.680903 CAAAGCCTATCAAATATACATGATCCC 58.319 37.037 0.00 0.00 37.46 3.85
8912 10701 5.437060 GGACAGGTCAAAGCCTATCAAATA 58.563 41.667 1.41 0.00 33.87 1.40
8982 10771 2.162208 TCTTCAACTTGATCATTGCGGC 59.838 45.455 0.00 0.00 0.00 6.53
9017 10806 5.049828 AGAAAATTTGCAGTCCCGAAAAAG 58.950 37.500 0.00 0.00 0.00 2.27
9023 10812 3.253188 TCTTGAGAAAATTTGCAGTCCCG 59.747 43.478 0.00 0.00 0.00 5.14
9070 10859 4.745351 AGCCTGGAATTCCTCTTCTTTTT 58.255 39.130 24.73 0.00 36.82 1.94
9102 10891 7.116736 GGGGAGTTCTCCATATGAAAAACTTA 58.883 38.462 18.83 0.00 0.00 2.24
9103 10892 5.952347 GGGGAGTTCTCCATATGAAAAACTT 59.048 40.000 18.83 0.00 0.00 2.66
9104 10893 5.015178 TGGGGAGTTCTCCATATGAAAAACT 59.985 40.000 18.83 9.86 0.00 2.66
9105 10894 5.261216 TGGGGAGTTCTCCATATGAAAAAC 58.739 41.667 18.83 5.26 0.00 2.43
9106 10895 5.528600 TGGGGAGTTCTCCATATGAAAAA 57.471 39.130 18.83 0.00 0.00 1.94
9107 10896 5.252863 TCTTGGGGAGTTCTCCATATGAAAA 59.747 40.000 18.83 0.00 32.48 2.29
9108 10897 4.788075 TCTTGGGGAGTTCTCCATATGAAA 59.212 41.667 18.83 4.72 32.48 2.69
9109 10898 4.370776 TCTTGGGGAGTTCTCCATATGAA 58.629 43.478 18.83 4.75 32.48 2.57
9110 10899 4.007581 TCTTGGGGAGTTCTCCATATGA 57.992 45.455 18.83 11.64 32.48 2.15
9111 10900 4.410228 TCTTCTTGGGGAGTTCTCCATATG 59.590 45.833 18.83 9.92 32.48 1.78
9112 10901 4.635473 TCTTCTTGGGGAGTTCTCCATAT 58.365 43.478 18.83 0.00 32.48 1.78
9113 10902 4.074799 TCTTCTTGGGGAGTTCTCCATA 57.925 45.455 18.83 5.83 32.48 2.74
9114 10903 2.921221 TCTTCTTGGGGAGTTCTCCAT 58.079 47.619 18.83 0.00 32.48 3.41
9115 10904 2.415983 TCTTCTTGGGGAGTTCTCCA 57.584 50.000 18.83 6.62 0.00 3.86
9116 10905 4.263506 TGAAATCTTCTTGGGGAGTTCTCC 60.264 45.833 10.13 10.13 37.42 3.71
9117 10906 4.911390 TGAAATCTTCTTGGGGAGTTCTC 58.089 43.478 0.00 0.00 37.42 2.87
9118 10907 5.259632 CATGAAATCTTCTTGGGGAGTTCT 58.740 41.667 0.00 0.00 37.42 3.01
9119 10908 4.400567 CCATGAAATCTTCTTGGGGAGTTC 59.599 45.833 11.62 0.00 46.01 3.01
9120 10909 4.347607 CCATGAAATCTTCTTGGGGAGTT 58.652 43.478 11.62 0.00 46.01 3.01
9165 10955 5.184864 TGCCATTTCGAACAGTCCAAATATT 59.815 36.000 0.00 0.00 0.00 1.28
9216 11006 8.757982 TTAAGTAAGTATCTCCAGGTTACGAT 57.242 34.615 0.00 0.00 0.00 3.73
9261 11051 9.057089 CGAATTCTTAACCTTTAATCTATGGCT 57.943 33.333 3.52 0.00 0.00 4.75
9277 11067 6.038603 CCAATCTTGCCATCTCGAATTCTTAA 59.961 38.462 3.52 0.00 0.00 1.85
9284 11074 1.065199 AGCCAATCTTGCCATCTCGAA 60.065 47.619 0.00 0.00 0.00 3.71
9286 11076 0.661552 CAGCCAATCTTGCCATCTCG 59.338 55.000 0.00 0.00 0.00 4.04
9289 11079 1.820519 TGTTCAGCCAATCTTGCCATC 59.179 47.619 0.00 0.00 0.00 3.51
9293 11083 0.244721 GGGTGTTCAGCCAATCTTGC 59.755 55.000 14.98 0.00 0.00 4.01
9325 11115 6.735130 AGCATGTAACTCTTAAACAAACACC 58.265 36.000 0.00 0.00 0.00 4.16
9362 11152 2.981805 CAATGCACGAACATGTTTCCTG 59.018 45.455 13.36 9.28 0.00 3.86
9386 11176 4.440525 CGTGGTTTCTGTATATACACCCGT 60.441 45.833 11.62 0.00 31.93 5.28
9387 11177 4.046462 CGTGGTTTCTGTATATACACCCG 58.954 47.826 11.62 12.11 31.93 5.28
9390 11180 5.961395 CCACGTGGTTTCTGTATATACAC 57.039 43.478 26.95 2.34 31.93 2.90
9401 11191 8.852430 AGAATAGTTTCAGAACCACGTGGTTTC 61.852 40.741 44.05 35.07 44.98 2.78
9402 11192 7.133824 AGAATAGTTTCAGAACCACGTGGTTT 61.134 38.462 44.05 32.04 44.98 3.27
9456 15173 8.667592 AACAGTCTAGTAACTATTTCCCTTCT 57.332 34.615 0.00 0.00 0.00 2.85
9457 15174 9.800433 GTAACAGTCTAGTAACTATTTCCCTTC 57.200 37.037 0.00 0.00 0.00 3.46
9474 15191 9.588096 AGGGAAGAAAAATAATTGTAACAGTCT 57.412 29.630 0.00 0.00 0.00 3.24
9476 15193 9.588096 AGAGGGAAGAAAAATAATTGTAACAGT 57.412 29.630 0.00 0.00 0.00 3.55
9485 15202 9.088987 TGCTAAAACAGAGGGAAGAAAAATAAT 57.911 29.630 0.00 0.00 0.00 1.28
9490 15207 6.379988 AGTTTGCTAAAACAGAGGGAAGAAAA 59.620 34.615 4.34 0.00 46.80 2.29
9498 15215 5.008613 TGTTGCTAGTTTGCTAAAACAGAGG 59.991 40.000 4.34 0.00 46.80 3.69
9499 15216 6.060028 TGTTGCTAGTTTGCTAAAACAGAG 57.940 37.500 4.34 2.55 46.80 3.35
9500 15217 6.039270 ACATGTTGCTAGTTTGCTAAAACAGA 59.961 34.615 0.00 0.00 46.80 3.41
9501 15218 6.208644 ACATGTTGCTAGTTTGCTAAAACAG 58.791 36.000 0.00 1.71 46.80 3.16
9505 15222 7.223777 GGAAAAACATGTTGCTAGTTTGCTAAA 59.776 33.333 12.82 0.00 35.79 1.85
9507 15224 6.040391 AGGAAAAACATGTTGCTAGTTTGCTA 59.960 34.615 19.14 0.00 35.79 3.49
9509 15226 5.049828 AGGAAAAACATGTTGCTAGTTTGC 58.950 37.500 12.82 13.13 35.79 3.68
9510 15227 6.753897 GAGGAAAAACATGTTGCTAGTTTG 57.246 37.500 12.82 0.00 35.79 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.