Multiple sequence alignment - TraesCS2D01G063400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G063400 chr2D 100.000 4051 0 0 1 4051 27275381 27279431 0.000000e+00 7481.0
1 TraesCS2D01G063400 chr2D 91.115 2780 164 35 429 3167 27317759 27320496 0.000000e+00 3688.0
2 TraesCS2D01G063400 chr2D 95.668 831 35 1 3221 4051 209021482 209020653 0.000000e+00 1334.0
3 TraesCS2D01G063400 chr2D 86.228 334 46 0 2267 2600 27333647 27333980 2.980000e-96 363.0
4 TraesCS2D01G063400 chr2D 86.147 231 32 0 1429 1659 27324928 27325158 2.420000e-62 250.0
5 TraesCS2D01G063400 chr2D 82.900 269 41 4 1029 1293 27496897 27496630 1.880000e-58 237.0
6 TraesCS2D01G063400 chr2D 83.268 257 42 1 1435 1691 27495285 27495030 6.770000e-58 235.0
7 TraesCS2D01G063400 chr2D 100.000 28 0 0 31 58 591303725 591303698 7.000000e-03 52.8
8 TraesCS2D01G063400 chr2A 96.362 1924 68 2 1298 3219 29601669 29603592 0.000000e+00 3164.0
9 TraesCS2D01G063400 chr2A 91.220 1902 119 20 1303 3164 29617239 29619132 0.000000e+00 2543.0
10 TraesCS2D01G063400 chr2A 90.503 874 46 14 431 1298 29616143 29616985 0.000000e+00 1120.0
11 TraesCS2D01G063400 chr2A 88.955 670 40 16 633 1298 29600273 29600912 0.000000e+00 797.0
12 TraesCS2D01G063400 chr2A 83.120 391 58 8 2215 2600 29654831 29655218 2.320000e-92 350.0
13 TraesCS2D01G063400 chr2A 80.815 417 72 8 2188 2600 29647019 29647431 1.820000e-83 320.0
14 TraesCS2D01G063400 chr2A 86.147 231 32 0 1429 1659 29645448 29645678 2.420000e-62 250.0
15 TraesCS2D01G063400 chr2A 83.270 263 44 0 1031 1293 29652979 29653241 4.050000e-60 243.0
16 TraesCS2D01G063400 chr2A 75.636 275 46 15 72 341 346196503 346196245 2.560000e-22 117.0
17 TraesCS2D01G063400 chr2A 100.000 34 0 0 426 459 29600071 29600104 3.380000e-06 63.9
18 TraesCS2D01G063400 chr2B 91.684 1900 105 21 1308 3167 43158737 43156851 0.000000e+00 2584.0
19 TraesCS2D01G063400 chr2B 88.567 726 54 13 582 1304 43159796 43159097 0.000000e+00 854.0
20 TraesCS2D01G063400 chr2B 85.629 334 48 0 2267 2600 43054780 43054447 6.440000e-93 351.0
21 TraesCS2D01G063400 chr2B 82.493 377 63 2 2226 2600 42984653 42984278 1.090000e-85 327.0
22 TraesCS2D01G063400 chr2B 85.771 253 36 0 2800 3052 43053133 43052881 6.670000e-68 268.0
23 TraesCS2D01G063400 chr2B 84.190 253 40 0 1429 1681 43116917 43116665 3.130000e-61 246.0
24 TraesCS2D01G063400 chr2B 88.679 159 10 5 383 534 43159957 43159800 1.920000e-43 187.0
25 TraesCS2D01G063400 chr2B 75.617 324 57 19 23 341 148251439 148251745 1.520000e-29 141.0
26 TraesCS2D01G063400 chr2B 86.667 75 7 3 1480 1553 42986461 42986389 3.360000e-11 80.5
27 TraesCS2D01G063400 chr7D 95.909 831 33 1 3221 4051 427920363 427919534 0.000000e+00 1345.0
28 TraesCS2D01G063400 chr7D 95.783 830 34 1 3222 4051 397624918 397624090 0.000000e+00 1338.0
29 TraesCS2D01G063400 chr6D 95.904 830 34 0 3222 4051 415283469 415284298 0.000000e+00 1345.0
30 TraesCS2D01G063400 chr5D 95.663 830 36 0 3222 4051 496333493 496332664 0.000000e+00 1334.0
31 TraesCS2D01G063400 chr5D 95.548 831 35 2 3222 4051 369810327 369811156 0.000000e+00 1328.0
32 TraesCS2D01G063400 chr3D 95.668 831 34 2 3222 4051 374286993 374287822 0.000000e+00 1334.0
33 TraesCS2D01G063400 chr3D 95.548 831 36 1 3222 4051 261014197 261013367 0.000000e+00 1328.0
34 TraesCS2D01G063400 chr3D 78.733 221 34 8 31 246 601916312 601916100 7.060000e-28 135.0
35 TraesCS2D01G063400 chr1D 95.673 832 33 2 3222 4051 464955627 464956457 0.000000e+00 1334.0
36 TraesCS2D01G063400 chr1D 76.033 242 48 7 28 263 316296888 316296651 2.560000e-22 117.0
37 TraesCS2D01G063400 chr1D 88.235 51 6 0 291 341 429024616 429024666 1.220000e-05 62.1
38 TraesCS2D01G063400 chr7A 78.509 228 39 8 31 254 443969581 443969360 1.520000e-29 141.0
39 TraesCS2D01G063400 chr5B 79.703 202 31 7 68 263 683500427 683500624 1.960000e-28 137.0
40 TraesCS2D01G063400 chr5B 78.462 130 26 2 202 330 561973883 561974011 2.590000e-12 84.2
41 TraesCS2D01G063400 chr5B 87.273 55 6 1 287 341 270665906 270665959 1.220000e-05 62.1
42 TraesCS2D01G063400 chr3A 75.655 267 56 7 78 340 658646777 658646516 1.530000e-24 124.0
43 TraesCS2D01G063400 chr3A 75.000 212 46 5 131 339 115850543 115850750 1.550000e-14 91.6
44 TraesCS2D01G063400 chr6A 78.680 197 33 7 72 263 150961422 150961230 5.500000e-24 122.0
45 TraesCS2D01G063400 chr4D 77.477 222 37 8 31 246 8162741 8162527 1.980000e-23 121.0
46 TraesCS2D01G063400 chr3B 74.107 224 44 12 29 246 773564852 773565067 3.360000e-11 80.5
47 TraesCS2D01G063400 chr3B 93.182 44 3 0 297 340 423176493 423176450 9.400000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G063400 chr2D 27275381 27279431 4050 False 7481.000000 7481 100.000000 1 4051 1 chr2D.!!$F1 4050
1 TraesCS2D01G063400 chr2D 27317759 27320496 2737 False 3688.000000 3688 91.115000 429 3167 1 chr2D.!!$F2 2738
2 TraesCS2D01G063400 chr2D 209020653 209021482 829 True 1334.000000 1334 95.668000 3221 4051 1 chr2D.!!$R1 830
3 TraesCS2D01G063400 chr2D 27495030 27496897 1867 True 236.000000 237 83.084000 1029 1691 2 chr2D.!!$R3 662
4 TraesCS2D01G063400 chr2A 29616143 29619132 2989 False 1831.500000 2543 90.861500 431 3164 2 chr2A.!!$F2 2733
5 TraesCS2D01G063400 chr2A 29600071 29603592 3521 False 1341.633333 3164 95.105667 426 3219 3 chr2A.!!$F1 2793
6 TraesCS2D01G063400 chr2A 29652979 29655218 2239 False 296.500000 350 83.195000 1031 2600 2 chr2A.!!$F4 1569
7 TraesCS2D01G063400 chr2A 29645448 29647431 1983 False 285.000000 320 83.481000 1429 2600 2 chr2A.!!$F3 1171
8 TraesCS2D01G063400 chr2B 43156851 43159957 3106 True 1208.333333 2584 89.643333 383 3167 3 chr2B.!!$R4 2784
9 TraesCS2D01G063400 chr2B 43052881 43054780 1899 True 309.500000 351 85.700000 2267 3052 2 chr2B.!!$R3 785
10 TraesCS2D01G063400 chr2B 42984278 42986461 2183 True 203.750000 327 84.580000 1480 2600 2 chr2B.!!$R2 1120
11 TraesCS2D01G063400 chr7D 427919534 427920363 829 True 1345.000000 1345 95.909000 3221 4051 1 chr7D.!!$R2 830
12 TraesCS2D01G063400 chr7D 397624090 397624918 828 True 1338.000000 1338 95.783000 3222 4051 1 chr7D.!!$R1 829
13 TraesCS2D01G063400 chr6D 415283469 415284298 829 False 1345.000000 1345 95.904000 3222 4051 1 chr6D.!!$F1 829
14 TraesCS2D01G063400 chr5D 496332664 496333493 829 True 1334.000000 1334 95.663000 3222 4051 1 chr5D.!!$R1 829
15 TraesCS2D01G063400 chr5D 369810327 369811156 829 False 1328.000000 1328 95.548000 3222 4051 1 chr5D.!!$F1 829
16 TraesCS2D01G063400 chr3D 374286993 374287822 829 False 1334.000000 1334 95.668000 3222 4051 1 chr3D.!!$F1 829
17 TraesCS2D01G063400 chr3D 261013367 261014197 830 True 1328.000000 1328 95.548000 3222 4051 1 chr3D.!!$R1 829
18 TraesCS2D01G063400 chr1D 464955627 464956457 830 False 1334.000000 1334 95.673000 3222 4051 1 chr1D.!!$F2 829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 156 0.035152 AGCCGGCACATCATTTGAGA 60.035 50.000 31.54 0.0 0.00 3.27 F
233 234 0.096976 CGCACATCGCCGAAAATTCT 59.903 50.000 0.00 0.0 37.30 2.40 F
936 1030 0.457851 AGCAGGCTAGCAGAGTAACG 59.542 55.000 18.24 0.0 36.85 3.18 F
1468 3171 0.461870 CCAATTGAGGTCATCGCGGA 60.462 55.000 6.13 0.0 0.00 5.54 F
1574 4304 4.219033 GTTATGGTCAAGCGTTTGTTCTG 58.781 43.478 11.93 0.0 35.73 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1013 1107 1.603842 CTGCTGCCACCACTCCATA 59.396 57.895 0.0 0.0 0.0 2.74 R
1574 4304 5.049818 CCAATCTAGCTTTTGATCATCGGAC 60.050 44.000 0.0 0.0 0.0 4.79 R
2667 6271 8.251026 CCACTACACTACTCAATTATCACTCAA 58.749 37.037 0.0 0.0 0.0 3.02 R
2991 7817 2.416747 TCCATCTCGTTTGCTTGACAG 58.583 47.619 0.0 0.0 0.0 3.51 R
3479 8309 3.681874 GCTAAGCTAACGGATGGGTCTTT 60.682 47.826 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.713762 AAAAATATCATGCGGAGAATTCCA 57.286 33.333 0.65 0.00 44.26 3.53
25 26 6.713762 AAAATATCATGCGGAGAATTCCAA 57.286 33.333 0.65 0.00 44.26 3.53
26 27 6.906157 AAATATCATGCGGAGAATTCCAAT 57.094 33.333 0.65 0.00 44.26 3.16
27 28 6.906157 AATATCATGCGGAGAATTCCAATT 57.094 33.333 0.65 0.00 44.26 2.32
28 29 6.906157 ATATCATGCGGAGAATTCCAATTT 57.094 33.333 0.65 0.00 44.26 1.82
29 30 4.374843 TCATGCGGAGAATTCCAATTTG 57.625 40.909 0.65 0.00 44.26 2.32
30 31 3.763360 TCATGCGGAGAATTCCAATTTGT 59.237 39.130 0.65 0.00 44.26 2.83
31 32 4.220382 TCATGCGGAGAATTCCAATTTGTT 59.780 37.500 0.65 0.00 44.26 2.83
32 33 4.599047 TGCGGAGAATTCCAATTTGTTT 57.401 36.364 0.65 0.00 44.26 2.83
33 34 4.954875 TGCGGAGAATTCCAATTTGTTTT 58.045 34.783 0.65 0.00 44.26 2.43
34 35 5.363939 TGCGGAGAATTCCAATTTGTTTTT 58.636 33.333 0.65 0.00 44.26 1.94
57 58 8.659569 TTTTAAACACAGTATAGACGTAGACG 57.340 34.615 0.00 0.00 46.33 4.18
58 59 3.940657 ACACAGTATAGACGTAGACGC 57.059 47.619 1.14 0.00 44.43 5.19
59 60 2.611292 ACACAGTATAGACGTAGACGCC 59.389 50.000 1.14 0.00 44.43 5.68
60 61 2.610833 CACAGTATAGACGTAGACGCCA 59.389 50.000 1.14 0.00 44.43 5.69
61 62 3.250280 CACAGTATAGACGTAGACGCCAT 59.750 47.826 1.14 0.00 44.43 4.40
62 63 3.497640 ACAGTATAGACGTAGACGCCATC 59.502 47.826 1.14 0.00 44.43 3.51
63 64 3.072944 AGTATAGACGTAGACGCCATCC 58.927 50.000 1.14 0.00 44.43 3.51
64 65 1.977056 ATAGACGTAGACGCCATCCA 58.023 50.000 1.14 0.00 44.43 3.41
65 66 1.977056 TAGACGTAGACGCCATCCAT 58.023 50.000 1.14 0.00 44.43 3.41
66 67 0.385751 AGACGTAGACGCCATCCATG 59.614 55.000 1.14 0.00 44.43 3.66
67 68 1.215655 GACGTAGACGCCATCCATGC 61.216 60.000 1.14 0.00 44.43 4.06
73 74 3.588906 CGCCATCCATGCGCACAT 61.589 61.111 14.90 1.53 46.01 3.21
74 75 2.253051 CGCCATCCATGCGCACATA 61.253 57.895 14.90 0.00 46.01 2.29
75 76 1.784036 CGCCATCCATGCGCACATAA 61.784 55.000 14.90 0.00 46.01 1.90
76 77 0.385029 GCCATCCATGCGCACATAAA 59.615 50.000 14.90 0.00 33.67 1.40
77 78 1.865248 GCCATCCATGCGCACATAAAC 60.865 52.381 14.90 0.00 33.67 2.01
78 79 1.677576 CCATCCATGCGCACATAAACT 59.322 47.619 14.90 0.00 33.67 2.66
79 80 2.099592 CCATCCATGCGCACATAAACTT 59.900 45.455 14.90 0.00 33.67 2.66
80 81 3.314913 CCATCCATGCGCACATAAACTTA 59.685 43.478 14.90 0.00 33.67 2.24
81 82 4.022935 CCATCCATGCGCACATAAACTTAT 60.023 41.667 14.90 0.00 33.67 1.73
82 83 4.811555 TCCATGCGCACATAAACTTATC 57.188 40.909 14.90 0.00 33.67 1.75
83 84 3.563808 TCCATGCGCACATAAACTTATCC 59.436 43.478 14.90 0.00 33.67 2.59
84 85 3.304659 CCATGCGCACATAAACTTATCCC 60.305 47.826 14.90 0.00 33.67 3.85
85 86 3.275617 TGCGCACATAAACTTATCCCT 57.724 42.857 5.66 0.00 0.00 4.20
86 87 4.409718 TGCGCACATAAACTTATCCCTA 57.590 40.909 5.66 0.00 0.00 3.53
87 88 4.968259 TGCGCACATAAACTTATCCCTAT 58.032 39.130 5.66 0.00 0.00 2.57
88 89 4.754618 TGCGCACATAAACTTATCCCTATG 59.245 41.667 5.66 0.00 0.00 2.23
89 90 4.994852 GCGCACATAAACTTATCCCTATGA 59.005 41.667 0.30 0.00 0.00 2.15
90 91 5.468746 GCGCACATAAACTTATCCCTATGAA 59.531 40.000 0.30 0.00 0.00 2.57
91 92 6.149474 GCGCACATAAACTTATCCCTATGAAT 59.851 38.462 0.30 0.00 0.00 2.57
92 93 7.521529 CGCACATAAACTTATCCCTATGAATG 58.478 38.462 0.00 0.00 0.00 2.67
93 94 7.308435 GCACATAAACTTATCCCTATGAATGC 58.692 38.462 0.00 0.00 0.00 3.56
94 95 7.040478 GCACATAAACTTATCCCTATGAATGCA 60.040 37.037 0.00 0.00 30.23 3.96
95 96 9.017509 CACATAAACTTATCCCTATGAATGCAT 57.982 33.333 0.00 0.00 38.54 3.96
99 100 7.986085 AACTTATCCCTATGAATGCATACAC 57.014 36.000 0.00 0.00 35.94 2.90
100 101 6.166279 ACTTATCCCTATGAATGCATACACG 58.834 40.000 0.00 0.00 35.94 4.49
101 102 2.766313 TCCCTATGAATGCATACACGC 58.234 47.619 0.00 0.00 35.94 5.34
103 104 2.224079 CCCTATGAATGCATACACGCAC 59.776 50.000 0.00 0.00 46.56 5.34
104 105 2.871633 CCTATGAATGCATACACGCACA 59.128 45.455 0.00 0.00 46.56 4.57
105 106 2.830772 ATGAATGCATACACGCACAC 57.169 45.000 0.00 0.00 46.56 3.82
106 107 0.801872 TGAATGCATACACGCACACC 59.198 50.000 0.00 0.00 46.56 4.16
107 108 0.247655 GAATGCATACACGCACACCG 60.248 55.000 0.00 0.00 46.56 4.94
109 110 7.900069 TATGAATGCATACACGCACACCGTA 62.900 44.000 0.00 0.00 46.56 4.02
116 117 3.213264 CGCACACCGTACCCCTAT 58.787 61.111 0.00 0.00 0.00 2.57
117 118 1.227147 CGCACACCGTACCCCTATG 60.227 63.158 0.00 0.00 0.00 2.23
118 119 1.669049 CGCACACCGTACCCCTATGA 61.669 60.000 0.00 0.00 0.00 2.15
119 120 0.104304 GCACACCGTACCCCTATGAG 59.896 60.000 0.00 0.00 0.00 2.90
120 121 0.104304 CACACCGTACCCCTATGAGC 59.896 60.000 0.00 0.00 0.00 4.26
121 122 0.324923 ACACCGTACCCCTATGAGCA 60.325 55.000 0.00 0.00 0.00 4.26
122 123 0.104304 CACCGTACCCCTATGAGCAC 59.896 60.000 0.00 0.00 0.00 4.40
123 124 1.047034 ACCGTACCCCTATGAGCACC 61.047 60.000 0.00 0.00 0.00 5.01
124 125 0.759436 CCGTACCCCTATGAGCACCT 60.759 60.000 0.00 0.00 0.00 4.00
125 126 0.674534 CGTACCCCTATGAGCACCTC 59.325 60.000 0.00 0.00 0.00 3.85
126 127 1.754555 CGTACCCCTATGAGCACCTCT 60.755 57.143 0.00 0.00 0.00 3.69
127 128 2.488528 CGTACCCCTATGAGCACCTCTA 60.489 54.545 0.00 0.00 0.00 2.43
128 129 2.868964 ACCCCTATGAGCACCTCTAA 57.131 50.000 0.00 0.00 0.00 2.10
129 130 3.130734 ACCCCTATGAGCACCTCTAAA 57.869 47.619 0.00 0.00 0.00 1.85
130 131 3.460825 ACCCCTATGAGCACCTCTAAAA 58.539 45.455 0.00 0.00 0.00 1.52
131 132 3.456277 ACCCCTATGAGCACCTCTAAAAG 59.544 47.826 0.00 0.00 0.00 2.27
132 133 3.711704 CCCCTATGAGCACCTCTAAAAGA 59.288 47.826 0.00 0.00 0.00 2.52
133 134 4.443598 CCCCTATGAGCACCTCTAAAAGAC 60.444 50.000 0.00 0.00 0.00 3.01
134 135 4.443598 CCCTATGAGCACCTCTAAAAGACC 60.444 50.000 0.00 0.00 0.00 3.85
135 136 2.743636 TGAGCACCTCTAAAAGACCG 57.256 50.000 0.00 0.00 0.00 4.79
136 137 2.244695 TGAGCACCTCTAAAAGACCGA 58.755 47.619 0.00 0.00 0.00 4.69
137 138 2.231478 TGAGCACCTCTAAAAGACCGAG 59.769 50.000 0.00 0.00 0.00 4.63
138 139 1.066787 AGCACCTCTAAAAGACCGAGC 60.067 52.381 0.00 0.00 0.00 5.03
139 140 2.007547 GCACCTCTAAAAGACCGAGCC 61.008 57.143 0.00 0.00 0.00 4.70
140 141 0.531200 ACCTCTAAAAGACCGAGCCG 59.469 55.000 0.00 0.00 0.00 5.52
150 151 2.514592 CCGAGCCGGCACATCATT 60.515 61.111 31.54 5.22 41.17 2.57
151 152 2.114670 CCGAGCCGGCACATCATTT 61.115 57.895 31.54 4.27 41.17 2.32
152 153 1.063006 CGAGCCGGCACATCATTTG 59.937 57.895 31.54 5.73 0.00 2.32
153 154 1.368345 CGAGCCGGCACATCATTTGA 61.368 55.000 31.54 0.00 0.00 2.69
154 155 0.379669 GAGCCGGCACATCATTTGAG 59.620 55.000 31.54 0.00 0.00 3.02
155 156 0.035152 AGCCGGCACATCATTTGAGA 60.035 50.000 31.54 0.00 0.00 3.27
156 157 1.027357 GCCGGCACATCATTTGAGAT 58.973 50.000 24.80 0.00 0.00 2.75
157 158 1.406539 GCCGGCACATCATTTGAGATT 59.593 47.619 24.80 0.00 0.00 2.40
158 159 2.797087 GCCGGCACATCATTTGAGATTG 60.797 50.000 24.80 0.00 0.00 2.67
159 160 2.684374 CCGGCACATCATTTGAGATTGA 59.316 45.455 0.00 0.00 0.00 2.57
160 161 3.488047 CCGGCACATCATTTGAGATTGAC 60.488 47.826 0.00 0.00 0.00 3.18
161 162 3.688272 GGCACATCATTTGAGATTGACG 58.312 45.455 0.00 0.00 0.00 4.35
162 163 3.374988 GGCACATCATTTGAGATTGACGA 59.625 43.478 0.00 0.00 0.00 4.20
163 164 4.142622 GGCACATCATTTGAGATTGACGAA 60.143 41.667 0.00 0.00 0.00 3.85
164 165 5.026462 GCACATCATTTGAGATTGACGAAG 58.974 41.667 0.00 0.00 0.00 3.79
176 177 2.191908 ACGAAGTTGCCACTGCCA 59.808 55.556 0.00 0.00 37.78 4.92
177 178 2.186826 ACGAAGTTGCCACTGCCAC 61.187 57.895 0.00 0.00 37.78 5.01
178 179 2.908073 CGAAGTTGCCACTGCCACC 61.908 63.158 0.00 0.00 33.74 4.61
179 180 1.827789 GAAGTTGCCACTGCCACCA 60.828 57.895 0.00 0.00 33.74 4.17
180 181 2.075426 GAAGTTGCCACTGCCACCAC 62.075 60.000 0.00 0.00 33.74 4.16
181 182 3.605664 GTTGCCACTGCCACCACC 61.606 66.667 0.00 0.00 36.33 4.61
182 183 3.819652 TTGCCACTGCCACCACCT 61.820 61.111 0.00 0.00 36.33 4.00
183 184 3.372422 TTGCCACTGCCACCACCTT 62.372 57.895 0.00 0.00 36.33 3.50
184 185 2.985847 GCCACTGCCACCACCTTC 60.986 66.667 0.00 0.00 0.00 3.46
185 186 2.669569 CCACTGCCACCACCTTCG 60.670 66.667 0.00 0.00 0.00 3.79
186 187 2.111043 CACTGCCACCACCTTCGT 59.889 61.111 0.00 0.00 0.00 3.85
187 188 1.369692 CACTGCCACCACCTTCGTA 59.630 57.895 0.00 0.00 0.00 3.43
188 189 0.670546 CACTGCCACCACCTTCGTAG 60.671 60.000 0.00 0.00 0.00 3.51
189 190 1.119574 ACTGCCACCACCTTCGTAGT 61.120 55.000 0.00 0.00 0.00 2.73
190 191 0.389948 CTGCCACCACCTTCGTAGTC 60.390 60.000 0.00 0.00 0.00 2.59
191 192 1.445582 GCCACCACCTTCGTAGTCG 60.446 63.158 0.00 0.00 38.55 4.18
192 193 1.870055 GCCACCACCTTCGTAGTCGA 61.870 60.000 0.00 0.00 44.66 4.20
193 194 0.815734 CCACCACCTTCGTAGTCGAT 59.184 55.000 0.00 0.00 45.65 3.59
194 195 1.469251 CCACCACCTTCGTAGTCGATG 60.469 57.143 0.00 0.00 45.65 3.84
216 217 5.938322 TGGAAACATCTTCTCAATTAACGC 58.062 37.500 0.00 0.00 33.40 4.84
217 218 5.471797 TGGAAACATCTTCTCAATTAACGCA 59.528 36.000 0.00 0.00 33.40 5.24
218 219 5.795441 GGAAACATCTTCTCAATTAACGCAC 59.205 40.000 0.00 0.00 0.00 5.34
219 220 5.940192 AACATCTTCTCAATTAACGCACA 57.060 34.783 0.00 0.00 0.00 4.57
220 221 6.500684 AACATCTTCTCAATTAACGCACAT 57.499 33.333 0.00 0.00 0.00 3.21
221 222 6.111768 ACATCTTCTCAATTAACGCACATC 57.888 37.500 0.00 0.00 0.00 3.06
222 223 4.840401 TCTTCTCAATTAACGCACATCG 57.160 40.909 0.00 0.00 45.38 3.84
223 224 3.062099 TCTTCTCAATTAACGCACATCGC 59.938 43.478 0.00 0.00 43.23 4.58
224 225 1.663643 TCTCAATTAACGCACATCGCC 59.336 47.619 0.00 0.00 43.23 5.54
225 226 0.371989 TCAATTAACGCACATCGCCG 59.628 50.000 0.00 0.00 43.23 6.46
226 227 0.371989 CAATTAACGCACATCGCCGA 59.628 50.000 0.00 0.00 43.23 5.54
227 228 1.080298 AATTAACGCACATCGCCGAA 58.920 45.000 0.00 0.00 43.23 4.30
228 229 1.080298 ATTAACGCACATCGCCGAAA 58.920 45.000 0.00 0.00 43.23 3.46
229 230 0.866427 TTAACGCACATCGCCGAAAA 59.134 45.000 0.00 0.00 43.23 2.29
230 231 1.080298 TAACGCACATCGCCGAAAAT 58.920 45.000 0.00 0.00 43.23 1.82
231 232 0.239879 AACGCACATCGCCGAAAATT 59.760 45.000 0.00 0.00 43.23 1.82
232 233 0.179200 ACGCACATCGCCGAAAATTC 60.179 50.000 0.00 0.00 43.23 2.17
233 234 0.096976 CGCACATCGCCGAAAATTCT 59.903 50.000 0.00 0.00 37.30 2.40
234 235 1.538276 GCACATCGCCGAAAATTCTG 58.462 50.000 0.00 0.00 32.94 3.02
235 236 1.130373 GCACATCGCCGAAAATTCTGA 59.870 47.619 0.00 0.00 32.94 3.27
236 237 2.414029 GCACATCGCCGAAAATTCTGAA 60.414 45.455 0.00 0.00 32.94 3.02
237 238 3.820689 CACATCGCCGAAAATTCTGAAA 58.179 40.909 0.00 0.00 0.00 2.69
238 239 4.414852 CACATCGCCGAAAATTCTGAAAT 58.585 39.130 0.00 0.00 0.00 2.17
239 240 5.568482 CACATCGCCGAAAATTCTGAAATA 58.432 37.500 0.00 0.00 0.00 1.40
240 241 6.027131 CACATCGCCGAAAATTCTGAAATAA 58.973 36.000 0.00 0.00 0.00 1.40
241 242 6.526325 CACATCGCCGAAAATTCTGAAATAAA 59.474 34.615 0.00 0.00 0.00 1.40
242 243 7.220683 CACATCGCCGAAAATTCTGAAATAAAT 59.779 33.333 0.00 0.00 0.00 1.40
243 244 7.759433 ACATCGCCGAAAATTCTGAAATAAATT 59.241 29.630 0.00 0.00 0.00 1.82
244 245 7.734538 TCGCCGAAAATTCTGAAATAAATTC 57.265 32.000 0.00 0.00 38.60 2.17
245 246 7.309177 TCGCCGAAAATTCTGAAATAAATTCA 58.691 30.769 0.00 0.00 45.71 2.57
246 247 7.973388 TCGCCGAAAATTCTGAAATAAATTCAT 59.027 29.630 0.00 0.00 46.62 2.57
247 248 8.594687 CGCCGAAAATTCTGAAATAAATTCATT 58.405 29.630 0.00 0.00 46.62 2.57
266 267 9.921637 AATTCATTAAAATACGAACACCAATGT 57.078 25.926 0.00 0.00 42.46 2.71
294 295 9.899226 AAGTCTACAACTTTAAATTTGATGAGC 57.101 29.630 21.16 13.01 46.26 4.26
295 296 9.289782 AGTCTACAACTTTAAATTTGATGAGCT 57.710 29.630 21.16 14.33 33.03 4.09
296 297 9.334693 GTCTACAACTTTAAATTTGATGAGCTG 57.665 33.333 21.16 0.00 0.00 4.24
297 298 8.514594 TCTACAACTTTAAATTTGATGAGCTGG 58.485 33.333 21.16 4.09 0.00 4.85
298 299 6.458210 ACAACTTTAAATTTGATGAGCTGGG 58.542 36.000 21.16 0.00 0.00 4.45
299 300 6.267471 ACAACTTTAAATTTGATGAGCTGGGA 59.733 34.615 21.16 0.00 0.00 4.37
300 301 6.916360 ACTTTAAATTTGATGAGCTGGGAA 57.084 33.333 0.00 0.00 0.00 3.97
301 302 7.486407 ACTTTAAATTTGATGAGCTGGGAAT 57.514 32.000 0.00 0.00 0.00 3.01
302 303 8.593945 ACTTTAAATTTGATGAGCTGGGAATA 57.406 30.769 0.00 0.00 0.00 1.75
303 304 9.205513 ACTTTAAATTTGATGAGCTGGGAATAT 57.794 29.630 0.00 0.00 0.00 1.28
304 305 9.688592 CTTTAAATTTGATGAGCTGGGAATATC 57.311 33.333 0.00 0.00 0.00 1.63
305 306 8.765488 TTAAATTTGATGAGCTGGGAATATCA 57.235 30.769 0.00 0.00 0.00 2.15
306 307 6.645790 AATTTGATGAGCTGGGAATATCAC 57.354 37.500 0.00 0.00 0.00 3.06
307 308 5.378230 TTTGATGAGCTGGGAATATCACT 57.622 39.130 0.00 0.00 0.00 3.41
308 309 4.347360 TGATGAGCTGGGAATATCACTG 57.653 45.455 0.00 0.00 0.00 3.66
309 310 3.713248 TGATGAGCTGGGAATATCACTGT 59.287 43.478 0.00 0.00 0.00 3.55
310 311 3.827008 TGAGCTGGGAATATCACTGTC 57.173 47.619 0.00 0.00 0.00 3.51
311 312 2.435805 TGAGCTGGGAATATCACTGTCC 59.564 50.000 0.00 0.00 0.00 4.02
312 313 2.703007 GAGCTGGGAATATCACTGTCCT 59.297 50.000 0.00 0.00 0.00 3.85
313 314 3.118531 AGCTGGGAATATCACTGTCCTT 58.881 45.455 0.00 0.00 0.00 3.36
314 315 3.135530 AGCTGGGAATATCACTGTCCTTC 59.864 47.826 0.00 0.00 0.00 3.46
315 316 3.135530 GCTGGGAATATCACTGTCCTTCT 59.864 47.826 0.00 0.00 0.00 2.85
316 317 4.345257 GCTGGGAATATCACTGTCCTTCTA 59.655 45.833 0.00 0.00 0.00 2.10
317 318 5.163301 GCTGGGAATATCACTGTCCTTCTAA 60.163 44.000 0.00 0.00 0.00 2.10
318 319 6.235231 TGGGAATATCACTGTCCTTCTAAC 57.765 41.667 0.00 0.00 0.00 2.34
319 320 5.130477 TGGGAATATCACTGTCCTTCTAACC 59.870 44.000 0.00 0.00 0.00 2.85
320 321 5.130477 GGGAATATCACTGTCCTTCTAACCA 59.870 44.000 0.00 0.00 0.00 3.67
321 322 6.183361 GGGAATATCACTGTCCTTCTAACCAT 60.183 42.308 0.00 0.00 0.00 3.55
322 323 7.283329 GGAATATCACTGTCCTTCTAACCATT 58.717 38.462 0.00 0.00 0.00 3.16
323 324 7.442666 GGAATATCACTGTCCTTCTAACCATTC 59.557 40.741 0.00 0.00 0.00 2.67
324 325 5.762179 ATCACTGTCCTTCTAACCATTCA 57.238 39.130 0.00 0.00 0.00 2.57
325 326 5.560722 TCACTGTCCTTCTAACCATTCAA 57.439 39.130 0.00 0.00 0.00 2.69
326 327 5.305585 TCACTGTCCTTCTAACCATTCAAC 58.694 41.667 0.00 0.00 0.00 3.18
327 328 4.455877 CACTGTCCTTCTAACCATTCAACC 59.544 45.833 0.00 0.00 0.00 3.77
328 329 4.104102 ACTGTCCTTCTAACCATTCAACCA 59.896 41.667 0.00 0.00 0.00 3.67
329 330 4.394729 TGTCCTTCTAACCATTCAACCAC 58.605 43.478 0.00 0.00 0.00 4.16
330 331 4.141367 TGTCCTTCTAACCATTCAACCACA 60.141 41.667 0.00 0.00 0.00 4.17
331 332 5.010282 GTCCTTCTAACCATTCAACCACAT 58.990 41.667 0.00 0.00 0.00 3.21
332 333 5.123979 GTCCTTCTAACCATTCAACCACATC 59.876 44.000 0.00 0.00 0.00 3.06
333 334 5.014123 TCCTTCTAACCATTCAACCACATCT 59.986 40.000 0.00 0.00 0.00 2.90
334 335 5.711976 CCTTCTAACCATTCAACCACATCTT 59.288 40.000 0.00 0.00 0.00 2.40
335 336 6.349611 CCTTCTAACCATTCAACCACATCTTG 60.350 42.308 0.00 0.00 0.00 3.02
347 348 4.147219 CCACATCTTGGTTCGAAAAGTC 57.853 45.455 0.00 0.00 41.10 3.01
348 349 3.058224 CCACATCTTGGTTCGAAAAGTCC 60.058 47.826 0.00 0.00 41.10 3.85
349 350 3.563808 CACATCTTGGTTCGAAAAGTCCA 59.436 43.478 0.00 0.00 0.00 4.02
350 351 3.815401 ACATCTTGGTTCGAAAAGTCCAG 59.185 43.478 0.00 0.00 0.00 3.86
351 352 3.553828 TCTTGGTTCGAAAAGTCCAGT 57.446 42.857 0.00 0.00 0.00 4.00
352 353 3.463944 TCTTGGTTCGAAAAGTCCAGTC 58.536 45.455 0.00 0.00 0.00 3.51
353 354 3.134081 TCTTGGTTCGAAAAGTCCAGTCT 59.866 43.478 0.00 0.00 0.00 3.24
354 355 4.342951 TCTTGGTTCGAAAAGTCCAGTCTA 59.657 41.667 0.00 0.00 0.00 2.59
355 356 4.884668 TGGTTCGAAAAGTCCAGTCTAT 57.115 40.909 0.00 0.00 0.00 1.98
356 357 5.223449 TGGTTCGAAAAGTCCAGTCTATT 57.777 39.130 0.00 0.00 0.00 1.73
357 358 5.617252 TGGTTCGAAAAGTCCAGTCTATTT 58.383 37.500 0.00 0.00 0.00 1.40
358 359 6.761312 TGGTTCGAAAAGTCCAGTCTATTTA 58.239 36.000 0.00 0.00 0.00 1.40
359 360 6.872020 TGGTTCGAAAAGTCCAGTCTATTTAG 59.128 38.462 0.00 0.00 0.00 1.85
360 361 6.183360 GGTTCGAAAAGTCCAGTCTATTTAGC 60.183 42.308 0.00 0.00 0.00 3.09
361 362 5.416947 TCGAAAAGTCCAGTCTATTTAGCC 58.583 41.667 0.00 0.00 0.00 3.93
362 363 4.267928 CGAAAAGTCCAGTCTATTTAGCCG 59.732 45.833 0.00 0.00 0.00 5.52
363 364 4.820894 AAAGTCCAGTCTATTTAGCCGT 57.179 40.909 0.00 0.00 0.00 5.68
364 365 4.820894 AAGTCCAGTCTATTTAGCCGTT 57.179 40.909 0.00 0.00 0.00 4.44
365 366 4.124851 AGTCCAGTCTATTTAGCCGTTG 57.875 45.455 0.00 0.00 0.00 4.10
366 367 3.514309 AGTCCAGTCTATTTAGCCGTTGT 59.486 43.478 0.00 0.00 0.00 3.32
367 368 4.020485 AGTCCAGTCTATTTAGCCGTTGTT 60.020 41.667 0.00 0.00 0.00 2.83
368 369 4.092968 GTCCAGTCTATTTAGCCGTTGTTG 59.907 45.833 0.00 0.00 0.00 3.33
369 370 4.020928 TCCAGTCTATTTAGCCGTTGTTGA 60.021 41.667 0.00 0.00 0.00 3.18
370 371 4.693566 CCAGTCTATTTAGCCGTTGTTGAA 59.306 41.667 0.00 0.00 0.00 2.69
371 372 5.354234 CCAGTCTATTTAGCCGTTGTTGAAT 59.646 40.000 0.00 0.00 0.00 2.57
372 373 6.128007 CCAGTCTATTTAGCCGTTGTTGAATT 60.128 38.462 0.00 0.00 0.00 2.17
373 374 7.065324 CCAGTCTATTTAGCCGTTGTTGAATTA 59.935 37.037 0.00 0.00 0.00 1.40
374 375 7.903431 CAGTCTATTTAGCCGTTGTTGAATTAC 59.097 37.037 0.00 0.00 0.00 1.89
375 376 7.604927 AGTCTATTTAGCCGTTGTTGAATTACA 59.395 33.333 0.00 0.00 0.00 2.41
376 377 8.395633 GTCTATTTAGCCGTTGTTGAATTACAT 58.604 33.333 0.00 0.00 0.00 2.29
377 378 8.394877 TCTATTTAGCCGTTGTTGAATTACATG 58.605 33.333 0.00 0.00 0.00 3.21
378 379 6.561737 TTTAGCCGTTGTTGAATTACATGA 57.438 33.333 0.00 0.00 0.00 3.07
379 380 6.561737 TTAGCCGTTGTTGAATTACATGAA 57.438 33.333 0.00 0.00 0.00 2.57
380 381 4.794169 AGCCGTTGTTGAATTACATGAAC 58.206 39.130 0.00 0.00 0.00 3.18
381 382 3.917985 GCCGTTGTTGAATTACATGAACC 59.082 43.478 0.00 0.00 0.00 3.62
553 561 1.268743 CCGGGTTTATCTACGTCCGTC 60.269 57.143 7.20 0.00 36.19 4.79
569 577 3.081061 TCCGTCCCATCTCATTTTGTTG 58.919 45.455 0.00 0.00 0.00 3.33
574 582 3.826157 TCCCATCTCATTTTGTTGACACC 59.174 43.478 0.00 0.00 0.00 4.16
612 628 1.383523 GTGGCCTCTACTGCATTTCC 58.616 55.000 3.32 0.00 0.00 3.13
648 734 3.078837 CACTGTAAACCAGGCCGTTTAT 58.921 45.455 16.09 1.95 46.06 1.40
650 736 4.093850 CACTGTAAACCAGGCCGTTTATAC 59.906 45.833 16.09 10.47 46.06 1.47
651 737 4.255301 CTGTAAACCAGGCCGTTTATACA 58.745 43.478 16.09 13.71 39.65 2.29
652 738 4.002316 TGTAAACCAGGCCGTTTATACAC 58.998 43.478 16.09 8.78 39.65 2.90
653 739 3.428413 AAACCAGGCCGTTTATACACT 57.572 42.857 6.95 0.00 34.21 3.55
654 740 3.428413 AACCAGGCCGTTTATACACTT 57.572 42.857 0.00 0.00 0.00 3.16
655 741 2.706890 ACCAGGCCGTTTATACACTTG 58.293 47.619 0.00 0.00 0.00 3.16
663 749 2.420967 CGTTTATACACTTGGGAGGGGG 60.421 54.545 0.00 0.00 0.00 5.40
704 793 3.564225 GGGGTGCAAAAGTATTCTATCCG 59.436 47.826 0.00 0.00 0.00 4.18
709 798 3.058914 GCAAAAGTATTCTATCCGCGCAT 60.059 43.478 8.75 0.00 0.00 4.73
769 858 2.672651 TGCGTCCAACTGCATGGG 60.673 61.111 6.50 0.00 41.05 4.00
812 901 2.498807 TCGAGGAATCATTCAGCTCG 57.501 50.000 15.99 15.99 40.49 5.03
813 902 2.024414 TCGAGGAATCATTCAGCTCGA 58.976 47.619 19.14 19.14 43.33 4.04
814 903 2.625314 TCGAGGAATCATTCAGCTCGAT 59.375 45.455 19.14 0.00 41.88 3.59
815 904 2.985809 CGAGGAATCATTCAGCTCGATC 59.014 50.000 16.77 0.00 41.14 3.69
816 905 3.324993 GAGGAATCATTCAGCTCGATCC 58.675 50.000 0.00 0.00 0.00 3.36
872 966 5.163642 CGAGCACTACCAATCTTGTACTACT 60.164 44.000 0.00 0.00 0.00 2.57
936 1030 0.457851 AGCAGGCTAGCAGAGTAACG 59.542 55.000 18.24 0.00 36.85 3.18
981 1075 2.415857 CGTAGACGTGTAGCAGAGAAGT 59.584 50.000 0.00 0.00 34.11 3.01
982 1076 3.615937 CGTAGACGTGTAGCAGAGAAGTA 59.384 47.826 0.00 0.00 34.11 2.24
983 1077 4.492247 CGTAGACGTGTAGCAGAGAAGTAC 60.492 50.000 0.00 0.00 34.11 2.73
1013 1107 1.207791 GTGATCATGGAGGTGGAGGT 58.792 55.000 0.00 0.00 0.00 3.85
1014 1108 2.023015 AGTGATCATGGAGGTGGAGGTA 60.023 50.000 0.00 0.00 0.00 3.08
1015 1109 2.975489 GTGATCATGGAGGTGGAGGTAT 59.025 50.000 0.00 0.00 0.00 2.73
1176 1273 3.692406 GGGGACACGGTTCTCGCT 61.692 66.667 0.00 0.00 43.89 4.93
1181 1278 2.811317 CACGGTTCTCGCTGAGCC 60.811 66.667 0.00 0.92 43.89 4.70
1468 3171 0.461870 CCAATTGAGGTCATCGCGGA 60.462 55.000 6.13 0.00 0.00 5.54
1574 4304 4.219033 GTTATGGTCAAGCGTTTGTTCTG 58.781 43.478 11.93 0.00 35.73 3.02
1696 4432 6.767524 TTTCAGGTTAGATGTGTGTGTTTT 57.232 33.333 0.00 0.00 0.00 2.43
2656 6260 6.153680 ACACAAACAATTTTGAGTTGGGAGTA 59.846 34.615 15.59 0.00 41.95 2.59
2667 6271 8.934023 TTTGAGTTGGGAGTATTTTATTGACT 57.066 30.769 0.00 0.00 0.00 3.41
2753 6825 7.363205 AGTTTCAAACAATTTTCACCTTGTG 57.637 32.000 2.41 0.00 35.82 3.33
2964 7790 6.316390 GGAGAAGGTGTTATACAAGACAATGG 59.684 42.308 0.00 0.00 29.59 3.16
3191 8018 6.414732 TGGGAGTAATTAGTGAGATGTTTGG 58.585 40.000 0.00 0.00 0.00 3.28
3219 8046 9.086758 ACTTCCTTTGAATCTCTCAATTCATTT 57.913 29.630 0.57 0.00 43.64 2.32
3241 8068 8.477256 CATTTTTGAAGGAAATATGCCCTAGAA 58.523 33.333 0.00 0.00 29.68 2.10
3328 8156 7.813645 AGAATTGTATTAACCGGAAACTTGAC 58.186 34.615 9.46 0.00 0.00 3.18
3379 8207 3.633065 GTGTCCCTAGTAAGCCTCTACTG 59.367 52.174 1.91 0.00 34.03 2.74
3434 8264 6.121776 TCCTAACCATAGACATGTGTTGTT 57.878 37.500 1.15 6.77 39.18 2.83
3479 8309 7.140522 TCATTAGGAGAATGATGTGATGGAA 57.859 36.000 0.00 0.00 32.21 3.53
3591 8421 1.335132 ATGCAACTCCCGGATACCGT 61.335 55.000 0.73 0.00 46.80 4.83
3743 8573 0.644937 AGGTATCTCTGGGCCCTCTT 59.355 55.000 25.70 5.92 0.00 2.85
3770 8600 6.720112 AATGCACATCATAATAAGCCTTGT 57.280 33.333 0.00 0.00 34.33 3.16
3890 8720 2.797156 CGATCGAATCTTGGGCAAGTAG 59.203 50.000 10.26 0.00 39.38 2.57
3914 8744 5.298276 GCATACCGATGACAAAGGGAATAAA 59.702 40.000 4.83 0.00 34.73 1.40
3917 8747 4.700213 ACCGATGACAAAGGGAATAAAGTG 59.300 41.667 4.83 0.00 0.00 3.16
3928 8758 7.448748 AAGGGAATAAAGTGTGTTGTCATAC 57.551 36.000 0.00 0.00 36.22 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.738114 TGGAATTCTCCGCATGATATTTTTC 58.262 36.000 5.23 0.00 45.85 2.29
1 2 6.713762 TGGAATTCTCCGCATGATATTTTT 57.286 33.333 5.23 0.00 45.85 1.94
2 3 6.713762 TTGGAATTCTCCGCATGATATTTT 57.286 33.333 5.23 0.00 45.85 1.82
3 4 6.906157 ATTGGAATTCTCCGCATGATATTT 57.094 33.333 5.23 0.00 45.85 1.40
4 5 6.906157 AATTGGAATTCTCCGCATGATATT 57.094 33.333 5.23 0.00 45.85 1.28
5 6 6.266103 ACAAATTGGAATTCTCCGCATGATAT 59.734 34.615 5.23 0.00 45.85 1.63
6 7 5.593909 ACAAATTGGAATTCTCCGCATGATA 59.406 36.000 5.23 0.00 45.85 2.15
7 8 4.403432 ACAAATTGGAATTCTCCGCATGAT 59.597 37.500 5.23 0.00 45.85 2.45
8 9 3.763360 ACAAATTGGAATTCTCCGCATGA 59.237 39.130 5.23 0.00 45.85 3.07
9 10 4.114058 ACAAATTGGAATTCTCCGCATG 57.886 40.909 5.23 0.00 45.85 4.06
10 11 4.806640 AACAAATTGGAATTCTCCGCAT 57.193 36.364 5.23 0.00 45.85 4.73
11 12 4.599047 AAACAAATTGGAATTCTCCGCA 57.401 36.364 5.23 0.00 45.85 5.69
12 13 5.922739 AAAAACAAATTGGAATTCTCCGC 57.077 34.783 5.23 0.00 45.85 5.54
31 32 9.117145 CGTCTACGTCTATACTGTGTTTAAAAA 57.883 33.333 0.00 0.00 34.11 1.94
32 33 7.271223 GCGTCTACGTCTATACTGTGTTTAAAA 59.729 37.037 4.24 0.00 42.22 1.52
33 34 6.742718 GCGTCTACGTCTATACTGTGTTTAAA 59.257 38.462 4.24 0.00 42.22 1.52
34 35 6.250819 GCGTCTACGTCTATACTGTGTTTAA 58.749 40.000 4.24 0.00 42.22 1.52
35 36 5.220662 GGCGTCTACGTCTATACTGTGTTTA 60.221 44.000 4.24 0.00 41.36 2.01
36 37 4.437930 GGCGTCTACGTCTATACTGTGTTT 60.438 45.833 4.24 0.00 41.36 2.83
37 38 3.064545 GGCGTCTACGTCTATACTGTGTT 59.935 47.826 4.24 0.00 41.36 3.32
38 39 2.611292 GGCGTCTACGTCTATACTGTGT 59.389 50.000 4.24 0.00 41.36 3.72
39 40 2.610833 TGGCGTCTACGTCTATACTGTG 59.389 50.000 8.71 0.00 45.41 3.66
40 41 2.910199 TGGCGTCTACGTCTATACTGT 58.090 47.619 8.71 0.00 45.41 3.55
41 42 3.120269 GGATGGCGTCTACGTCTATACTG 60.120 52.174 8.71 0.00 45.41 2.74
42 43 3.072944 GGATGGCGTCTACGTCTATACT 58.927 50.000 8.71 0.00 45.41 2.12
43 44 2.810274 TGGATGGCGTCTACGTCTATAC 59.190 50.000 8.71 4.08 45.41 1.47
44 45 3.130280 TGGATGGCGTCTACGTCTATA 57.870 47.619 8.71 0.00 45.41 1.31
45 46 1.977056 TGGATGGCGTCTACGTCTAT 58.023 50.000 8.71 2.56 45.41 1.98
46 47 1.607148 CATGGATGGCGTCTACGTCTA 59.393 52.381 8.71 0.00 45.41 2.59
47 48 0.385751 CATGGATGGCGTCTACGTCT 59.614 55.000 8.71 0.00 45.41 4.18
48 49 1.215655 GCATGGATGGCGTCTACGTC 61.216 60.000 6.67 0.00 45.40 4.34
49 50 1.227263 GCATGGATGGCGTCTACGT 60.227 57.895 6.67 0.00 42.22 3.57
50 51 3.630204 GCATGGATGGCGTCTACG 58.370 61.111 6.67 0.00 43.27 3.51
57 58 0.385029 TTTATGTGCGCATGGATGGC 59.615 50.000 22.84 0.00 36.58 4.40
58 59 1.677576 AGTTTATGTGCGCATGGATGG 59.322 47.619 22.84 0.00 36.58 3.51
59 60 3.425577 AAGTTTATGTGCGCATGGATG 57.574 42.857 22.84 0.00 36.58 3.51
60 61 4.216257 GGATAAGTTTATGTGCGCATGGAT 59.784 41.667 22.84 9.13 36.58 3.41
61 62 3.563808 GGATAAGTTTATGTGCGCATGGA 59.436 43.478 22.84 8.44 36.58 3.41
62 63 3.304659 GGGATAAGTTTATGTGCGCATGG 60.305 47.826 22.84 0.00 36.58 3.66
63 64 3.565482 AGGGATAAGTTTATGTGCGCATG 59.435 43.478 22.84 0.00 36.58 4.06
64 65 3.820557 AGGGATAAGTTTATGTGCGCAT 58.179 40.909 15.91 18.22 39.03 4.73
65 66 3.275617 AGGGATAAGTTTATGTGCGCA 57.724 42.857 5.66 5.66 0.00 6.09
66 67 4.994852 TCATAGGGATAAGTTTATGTGCGC 59.005 41.667 0.00 0.00 0.00 6.09
67 68 7.521529 CATTCATAGGGATAAGTTTATGTGCG 58.478 38.462 0.00 0.00 0.00 5.34
68 69 7.040478 TGCATTCATAGGGATAAGTTTATGTGC 60.040 37.037 0.00 0.00 31.49 4.57
69 70 8.394971 TGCATTCATAGGGATAAGTTTATGTG 57.605 34.615 0.00 0.00 0.00 3.21
73 74 9.502091 GTGTATGCATTCATAGGGATAAGTTTA 57.498 33.333 3.54 0.00 35.96 2.01
74 75 7.173218 CGTGTATGCATTCATAGGGATAAGTTT 59.827 37.037 3.54 0.00 35.96 2.66
75 76 6.650807 CGTGTATGCATTCATAGGGATAAGTT 59.349 38.462 3.54 0.00 35.96 2.66
76 77 6.166279 CGTGTATGCATTCATAGGGATAAGT 58.834 40.000 3.54 0.00 35.96 2.24
77 78 5.063944 GCGTGTATGCATTCATAGGGATAAG 59.936 44.000 3.54 0.00 35.96 1.73
78 79 4.935205 GCGTGTATGCATTCATAGGGATAA 59.065 41.667 3.54 0.00 35.96 1.75
79 80 4.020662 TGCGTGTATGCATTCATAGGGATA 60.021 41.667 3.54 0.00 40.62 2.59
80 81 3.244526 TGCGTGTATGCATTCATAGGGAT 60.245 43.478 3.54 0.00 40.62 3.85
81 82 2.103941 TGCGTGTATGCATTCATAGGGA 59.896 45.455 3.54 0.00 40.62 4.20
82 83 2.493035 TGCGTGTATGCATTCATAGGG 58.507 47.619 3.54 0.00 40.62 3.53
91 92 1.009903 GTACGGTGTGCGTGTATGCA 61.010 55.000 0.00 0.00 43.95 3.96
92 93 1.689352 GGTACGGTGTGCGTGTATGC 61.689 60.000 0.00 0.00 0.00 3.14
93 94 1.079875 GGGTACGGTGTGCGTGTATG 61.080 60.000 0.00 0.00 0.00 2.39
94 95 1.216178 GGGTACGGTGTGCGTGTAT 59.784 57.895 0.00 0.00 0.00 2.29
95 96 2.650196 GGGTACGGTGTGCGTGTA 59.350 61.111 0.00 0.00 0.00 2.90
96 97 4.303993 GGGGTACGGTGTGCGTGT 62.304 66.667 0.00 0.00 0.00 4.49
97 98 1.952102 ATAGGGGTACGGTGTGCGTG 61.952 60.000 0.00 0.00 0.00 5.34
98 99 1.683365 ATAGGGGTACGGTGTGCGT 60.683 57.895 0.00 0.00 0.00 5.24
99 100 1.227147 CATAGGGGTACGGTGTGCG 60.227 63.158 0.00 0.00 0.00 5.34
100 101 0.104304 CTCATAGGGGTACGGTGTGC 59.896 60.000 0.00 0.00 0.00 4.57
101 102 0.104304 GCTCATAGGGGTACGGTGTG 59.896 60.000 0.00 0.00 0.00 3.82
102 103 0.324923 TGCTCATAGGGGTACGGTGT 60.325 55.000 0.00 0.00 0.00 4.16
103 104 0.104304 GTGCTCATAGGGGTACGGTG 59.896 60.000 0.00 0.00 0.00 4.94
104 105 1.047034 GGTGCTCATAGGGGTACGGT 61.047 60.000 0.00 0.00 0.00 4.83
105 106 0.759436 AGGTGCTCATAGGGGTACGG 60.759 60.000 0.00 0.00 0.00 4.02
106 107 0.674534 GAGGTGCTCATAGGGGTACG 59.325 60.000 0.00 0.00 0.00 3.67
107 108 2.089600 AGAGGTGCTCATAGGGGTAC 57.910 55.000 0.00 0.00 32.06 3.34
108 109 3.985553 TTAGAGGTGCTCATAGGGGTA 57.014 47.619 0.00 0.00 32.06 3.69
109 110 2.868964 TTAGAGGTGCTCATAGGGGT 57.131 50.000 0.00 0.00 32.06 4.95
110 111 3.711704 TCTTTTAGAGGTGCTCATAGGGG 59.288 47.826 0.00 0.00 32.06 4.79
111 112 4.443598 GGTCTTTTAGAGGTGCTCATAGGG 60.444 50.000 0.00 0.00 32.06 3.53
112 113 4.698575 GGTCTTTTAGAGGTGCTCATAGG 58.301 47.826 0.00 0.00 32.06 2.57
113 114 4.098044 TCGGTCTTTTAGAGGTGCTCATAG 59.902 45.833 0.00 0.00 32.06 2.23
114 115 4.021229 TCGGTCTTTTAGAGGTGCTCATA 58.979 43.478 0.00 0.00 32.06 2.15
115 116 2.832129 TCGGTCTTTTAGAGGTGCTCAT 59.168 45.455 0.00 0.00 32.06 2.90
116 117 2.231478 CTCGGTCTTTTAGAGGTGCTCA 59.769 50.000 0.00 0.00 32.06 4.26
117 118 2.882324 CTCGGTCTTTTAGAGGTGCTC 58.118 52.381 0.00 0.00 0.00 4.26
118 119 1.066787 GCTCGGTCTTTTAGAGGTGCT 60.067 52.381 0.00 0.00 32.96 4.40
119 120 1.360820 GCTCGGTCTTTTAGAGGTGC 58.639 55.000 0.00 0.00 32.96 5.01
120 121 1.736032 CGGCTCGGTCTTTTAGAGGTG 60.736 57.143 0.00 0.00 32.96 4.00
121 122 0.531200 CGGCTCGGTCTTTTAGAGGT 59.469 55.000 0.00 0.00 32.96 3.85
122 123 0.179108 CCGGCTCGGTCTTTTAGAGG 60.179 60.000 5.56 0.00 42.73 3.69
123 124 3.347411 CCGGCTCGGTCTTTTAGAG 57.653 57.895 5.56 0.00 42.73 2.43
134 135 1.063006 CAAATGATGTGCCGGCTCG 59.937 57.895 29.70 5.41 0.00 5.03
135 136 0.379669 CTCAAATGATGTGCCGGCTC 59.620 55.000 29.70 25.38 0.00 4.70
136 137 0.035152 TCTCAAATGATGTGCCGGCT 60.035 50.000 29.70 7.33 0.00 5.52
137 138 1.027357 ATCTCAAATGATGTGCCGGC 58.973 50.000 22.73 22.73 0.00 6.13
138 139 2.684374 TCAATCTCAAATGATGTGCCGG 59.316 45.455 0.00 0.00 0.00 6.13
139 140 3.688272 GTCAATCTCAAATGATGTGCCG 58.312 45.455 0.00 0.00 0.00 5.69
140 141 3.374988 TCGTCAATCTCAAATGATGTGCC 59.625 43.478 0.00 0.00 34.80 5.01
141 142 4.604843 TCGTCAATCTCAAATGATGTGC 57.395 40.909 0.00 0.00 34.80 4.57
142 143 6.174451 ACTTCGTCAATCTCAAATGATGTG 57.826 37.500 0.00 0.00 34.80 3.21
143 144 6.605849 CAACTTCGTCAATCTCAAATGATGT 58.394 36.000 0.00 0.00 34.80 3.06
144 145 5.510674 GCAACTTCGTCAATCTCAAATGATG 59.489 40.000 0.00 0.00 34.57 3.07
145 146 5.392380 GGCAACTTCGTCAATCTCAAATGAT 60.392 40.000 0.00 0.00 0.00 2.45
146 147 4.083324 GGCAACTTCGTCAATCTCAAATGA 60.083 41.667 0.00 0.00 0.00 2.57
147 148 4.161333 GGCAACTTCGTCAATCTCAAATG 58.839 43.478 0.00 0.00 0.00 2.32
148 149 3.820467 TGGCAACTTCGTCAATCTCAAAT 59.180 39.130 0.00 0.00 37.61 2.32
149 150 3.003275 GTGGCAACTTCGTCAATCTCAAA 59.997 43.478 0.00 0.00 37.61 2.69
150 151 2.548057 GTGGCAACTTCGTCAATCTCAA 59.452 45.455 0.00 0.00 37.61 3.02
151 152 2.143122 GTGGCAACTTCGTCAATCTCA 58.857 47.619 0.00 0.00 37.61 3.27
152 153 2.158449 CAGTGGCAACTTCGTCAATCTC 59.842 50.000 0.00 0.00 32.98 2.75
153 154 2.146342 CAGTGGCAACTTCGTCAATCT 58.854 47.619 0.00 0.00 32.98 2.40
154 155 1.400242 GCAGTGGCAACTTCGTCAATC 60.400 52.381 0.00 0.00 40.72 2.67
155 156 0.593128 GCAGTGGCAACTTCGTCAAT 59.407 50.000 0.00 0.00 40.72 2.57
156 157 1.444119 GGCAGTGGCAACTTCGTCAA 61.444 55.000 12.58 0.00 43.71 3.18
157 158 1.891919 GGCAGTGGCAACTTCGTCA 60.892 57.895 12.58 0.00 43.71 4.35
158 159 1.891919 TGGCAGTGGCAACTTCGTC 60.892 57.895 18.31 0.00 43.71 4.20
159 160 2.186826 GTGGCAGTGGCAACTTCGT 61.187 57.895 22.39 0.00 41.01 3.85
160 161 2.639286 GTGGCAGTGGCAACTTCG 59.361 61.111 22.39 0.00 41.01 3.79
161 162 1.827789 TGGTGGCAGTGGCAACTTC 60.828 57.895 31.93 15.37 46.32 3.01
162 163 2.127232 GTGGTGGCAGTGGCAACTT 61.127 57.895 31.93 0.00 46.32 2.66
163 164 2.519302 GTGGTGGCAGTGGCAACT 60.519 61.111 31.93 0.00 46.32 3.16
164 165 3.605664 GGTGGTGGCAGTGGCAAC 61.606 66.667 26.87 26.87 46.35 4.17
165 166 3.372422 AAGGTGGTGGCAGTGGCAA 62.372 57.895 22.39 3.58 43.71 4.52
166 167 3.790416 GAAGGTGGTGGCAGTGGCA 62.790 63.158 16.56 16.56 43.71 4.92
167 168 2.985847 GAAGGTGGTGGCAGTGGC 60.986 66.667 10.30 10.30 40.13 5.01
168 169 2.107041 TACGAAGGTGGTGGCAGTGG 62.107 60.000 0.00 0.00 0.00 4.00
169 170 0.670546 CTACGAAGGTGGTGGCAGTG 60.671 60.000 0.00 0.00 0.00 3.66
170 171 1.119574 ACTACGAAGGTGGTGGCAGT 61.120 55.000 0.00 0.00 36.41 4.40
171 172 0.389948 GACTACGAAGGTGGTGGCAG 60.390 60.000 0.00 0.00 38.06 4.85
172 173 1.669440 GACTACGAAGGTGGTGGCA 59.331 57.895 0.00 0.00 38.06 4.92
173 174 1.445582 CGACTACGAAGGTGGTGGC 60.446 63.158 0.00 0.00 38.06 5.01
174 175 2.260247 TCGACTACGAAGGTGGTGG 58.740 57.895 0.00 0.00 45.74 4.61
191 192 6.688813 GCGTTAATTGAGAAGATGTTTCCATC 59.311 38.462 0.00 0.00 46.56 3.51
192 193 6.150976 TGCGTTAATTGAGAAGATGTTTCCAT 59.849 34.615 0.00 0.00 0.00 3.41
193 194 5.471797 TGCGTTAATTGAGAAGATGTTTCCA 59.528 36.000 0.00 0.00 0.00 3.53
194 195 5.795441 GTGCGTTAATTGAGAAGATGTTTCC 59.205 40.000 0.00 0.00 0.00 3.13
195 196 6.370593 TGTGCGTTAATTGAGAAGATGTTTC 58.629 36.000 0.00 0.00 0.00 2.78
196 197 6.312399 TGTGCGTTAATTGAGAAGATGTTT 57.688 33.333 0.00 0.00 0.00 2.83
197 198 5.940192 TGTGCGTTAATTGAGAAGATGTT 57.060 34.783 0.00 0.00 0.00 2.71
198 199 5.220472 CGATGTGCGTTAATTGAGAAGATGT 60.220 40.000 0.00 0.00 34.64 3.06
199 200 5.193216 CGATGTGCGTTAATTGAGAAGATG 58.807 41.667 0.00 0.00 34.64 2.90
200 201 4.260375 GCGATGTGCGTTAATTGAGAAGAT 60.260 41.667 0.00 0.00 43.41 2.40
201 202 3.062099 GCGATGTGCGTTAATTGAGAAGA 59.938 43.478 0.00 0.00 43.41 2.87
202 203 3.345714 GCGATGTGCGTTAATTGAGAAG 58.654 45.455 0.00 0.00 43.41 2.85
203 204 3.383546 GCGATGTGCGTTAATTGAGAA 57.616 42.857 0.00 0.00 43.41 2.87
215 216 1.130373 TCAGAATTTTCGGCGATGTGC 59.870 47.619 11.76 0.00 45.38 4.57
216 217 3.469899 TTCAGAATTTTCGGCGATGTG 57.530 42.857 11.76 4.53 0.00 3.21
217 218 4.701956 ATTTCAGAATTTTCGGCGATGT 57.298 36.364 11.76 0.00 0.00 3.06
218 219 7.684062 ATTTATTTCAGAATTTTCGGCGATG 57.316 32.000 11.76 4.79 0.00 3.84
219 220 7.973388 TGAATTTATTTCAGAATTTTCGGCGAT 59.027 29.630 11.76 0.00 39.44 4.58
220 221 7.309177 TGAATTTATTTCAGAATTTTCGGCGA 58.691 30.769 4.99 4.99 39.44 5.54
221 222 7.504922 TGAATTTATTTCAGAATTTTCGGCG 57.495 32.000 0.00 0.00 39.44 6.46
240 241 9.921637 ACATTGGTGTTCGTATTTTAATGAATT 57.078 25.926 0.00 0.00 34.01 2.17
241 242 9.921637 AACATTGGTGTTCGTATTTTAATGAAT 57.078 25.926 0.00 0.00 45.14 2.57
246 247 9.881529 GACTTAACATTGGTGTTCGTATTTTAA 57.118 29.630 0.00 0.00 45.14 1.52
247 248 9.275398 AGACTTAACATTGGTGTTCGTATTTTA 57.725 29.630 0.00 0.00 45.14 1.52
248 249 8.161699 AGACTTAACATTGGTGTTCGTATTTT 57.838 30.769 0.00 0.00 45.14 1.82
249 250 7.739498 AGACTTAACATTGGTGTTCGTATTT 57.261 32.000 0.00 0.00 45.14 1.40
250 251 7.874016 TGTAGACTTAACATTGGTGTTCGTATT 59.126 33.333 0.00 0.00 45.14 1.89
251 252 7.380536 TGTAGACTTAACATTGGTGTTCGTAT 58.619 34.615 0.00 0.00 45.14 3.06
252 253 6.747125 TGTAGACTTAACATTGGTGTTCGTA 58.253 36.000 0.00 0.00 45.14 3.43
253 254 5.603596 TGTAGACTTAACATTGGTGTTCGT 58.396 37.500 0.00 0.00 45.14 3.85
254 255 6.202188 AGTTGTAGACTTAACATTGGTGTTCG 59.798 38.462 0.00 0.00 46.84 3.95
255 256 7.492352 AGTTGTAGACTTAACATTGGTGTTC 57.508 36.000 0.00 0.00 46.84 3.18
256 257 7.875327 AAGTTGTAGACTTAACATTGGTGTT 57.125 32.000 0.00 0.00 46.61 3.32
269 270 9.289782 AGCTCATCAAATTTAAAGTTGTAGACT 57.710 29.630 23.31 17.57 41.47 3.24
270 271 9.334693 CAGCTCATCAAATTTAAAGTTGTAGAC 57.665 33.333 23.31 16.27 35.64 2.59
271 272 8.514594 CCAGCTCATCAAATTTAAAGTTGTAGA 58.485 33.333 23.31 20.03 35.64 2.59
272 273 7.756722 CCCAGCTCATCAAATTTAAAGTTGTAG 59.243 37.037 23.31 19.36 35.64 2.74
273 274 7.450014 TCCCAGCTCATCAAATTTAAAGTTGTA 59.550 33.333 23.31 13.29 35.64 2.41
274 275 6.267471 TCCCAGCTCATCAAATTTAAAGTTGT 59.733 34.615 23.31 11.43 35.64 3.32
275 276 6.690530 TCCCAGCTCATCAAATTTAAAGTTG 58.309 36.000 19.62 19.62 35.48 3.16
276 277 6.916360 TCCCAGCTCATCAAATTTAAAGTT 57.084 33.333 0.00 0.00 0.00 2.66
277 278 6.916360 TTCCCAGCTCATCAAATTTAAAGT 57.084 33.333 0.00 0.00 0.00 2.66
278 279 9.688592 GATATTCCCAGCTCATCAAATTTAAAG 57.311 33.333 0.00 0.00 0.00 1.85
279 280 9.199645 TGATATTCCCAGCTCATCAAATTTAAA 57.800 29.630 0.00 0.00 0.00 1.52
280 281 8.632679 GTGATATTCCCAGCTCATCAAATTTAA 58.367 33.333 0.00 0.00 0.00 1.52
281 282 8.000709 AGTGATATTCCCAGCTCATCAAATTTA 58.999 33.333 0.00 0.00 0.00 1.40
282 283 6.837568 AGTGATATTCCCAGCTCATCAAATTT 59.162 34.615 0.00 0.00 0.00 1.82
283 284 6.264744 CAGTGATATTCCCAGCTCATCAAATT 59.735 38.462 0.00 0.00 0.00 1.82
284 285 5.768662 CAGTGATATTCCCAGCTCATCAAAT 59.231 40.000 0.00 0.00 0.00 2.32
285 286 5.128205 CAGTGATATTCCCAGCTCATCAAA 58.872 41.667 0.00 0.00 0.00 2.69
286 287 4.164796 ACAGTGATATTCCCAGCTCATCAA 59.835 41.667 0.00 0.00 0.00 2.57
287 288 3.713248 ACAGTGATATTCCCAGCTCATCA 59.287 43.478 0.00 0.00 0.00 3.07
288 289 4.314121 GACAGTGATATTCCCAGCTCATC 58.686 47.826 0.00 0.00 0.00 2.92
289 290 3.072184 GGACAGTGATATTCCCAGCTCAT 59.928 47.826 0.00 0.00 0.00 2.90
290 291 2.435805 GGACAGTGATATTCCCAGCTCA 59.564 50.000 0.00 0.00 0.00 4.26
291 292 2.703007 AGGACAGTGATATTCCCAGCTC 59.297 50.000 0.00 0.00 0.00 4.09
292 293 2.769209 AGGACAGTGATATTCCCAGCT 58.231 47.619 0.00 0.00 0.00 4.24
293 294 3.135530 AGAAGGACAGTGATATTCCCAGC 59.864 47.826 0.00 0.00 0.00 4.85
294 295 6.284459 GTTAGAAGGACAGTGATATTCCCAG 58.716 44.000 0.00 0.00 0.00 4.45
295 296 5.130477 GGTTAGAAGGACAGTGATATTCCCA 59.870 44.000 0.00 0.00 0.00 4.37
296 297 5.130477 TGGTTAGAAGGACAGTGATATTCCC 59.870 44.000 0.00 0.00 0.00 3.97
297 298 6.235231 TGGTTAGAAGGACAGTGATATTCC 57.765 41.667 0.00 0.00 0.00 3.01
298 299 7.987458 TGAATGGTTAGAAGGACAGTGATATTC 59.013 37.037 0.00 0.00 0.00 1.75
299 300 7.861629 TGAATGGTTAGAAGGACAGTGATATT 58.138 34.615 0.00 0.00 0.00 1.28
300 301 7.437713 TGAATGGTTAGAAGGACAGTGATAT 57.562 36.000 0.00 0.00 0.00 1.63
301 302 6.867519 TGAATGGTTAGAAGGACAGTGATA 57.132 37.500 0.00 0.00 0.00 2.15
302 303 5.762179 TGAATGGTTAGAAGGACAGTGAT 57.238 39.130 0.00 0.00 0.00 3.06
303 304 5.305585 GTTGAATGGTTAGAAGGACAGTGA 58.694 41.667 0.00 0.00 0.00 3.41
304 305 4.455877 GGTTGAATGGTTAGAAGGACAGTG 59.544 45.833 0.00 0.00 0.00 3.66
305 306 4.104102 TGGTTGAATGGTTAGAAGGACAGT 59.896 41.667 0.00 0.00 0.00 3.55
306 307 4.455877 GTGGTTGAATGGTTAGAAGGACAG 59.544 45.833 0.00 0.00 0.00 3.51
307 308 4.141367 TGTGGTTGAATGGTTAGAAGGACA 60.141 41.667 0.00 0.00 0.00 4.02
308 309 4.394729 TGTGGTTGAATGGTTAGAAGGAC 58.605 43.478 0.00 0.00 0.00 3.85
309 310 4.715534 TGTGGTTGAATGGTTAGAAGGA 57.284 40.909 0.00 0.00 0.00 3.36
310 311 5.256474 AGATGTGGTTGAATGGTTAGAAGG 58.744 41.667 0.00 0.00 0.00 3.46
311 312 6.349611 CCAAGATGTGGTTGAATGGTTAGAAG 60.350 42.308 0.00 0.00 43.20 2.85
312 313 5.476599 CCAAGATGTGGTTGAATGGTTAGAA 59.523 40.000 0.00 0.00 43.20 2.10
313 314 5.009631 CCAAGATGTGGTTGAATGGTTAGA 58.990 41.667 0.00 0.00 43.20 2.10
314 315 5.314923 CCAAGATGTGGTTGAATGGTTAG 57.685 43.478 0.00 0.00 43.20 2.34
327 328 3.563808 TGGACTTTTCGAACCAAGATGTG 59.436 43.478 14.89 0.00 0.00 3.21
328 329 3.815401 CTGGACTTTTCGAACCAAGATGT 59.185 43.478 14.89 1.45 31.85 3.06
329 330 3.815401 ACTGGACTTTTCGAACCAAGATG 59.185 43.478 14.89 3.11 31.85 2.90
330 331 4.065789 GACTGGACTTTTCGAACCAAGAT 58.934 43.478 14.89 1.15 31.85 2.40
331 332 3.134081 AGACTGGACTTTTCGAACCAAGA 59.866 43.478 14.89 0.00 31.85 3.02
332 333 3.467803 AGACTGGACTTTTCGAACCAAG 58.532 45.455 0.00 2.29 31.85 3.61
333 334 3.553828 AGACTGGACTTTTCGAACCAA 57.446 42.857 0.00 0.00 31.85 3.67
334 335 4.884668 ATAGACTGGACTTTTCGAACCA 57.115 40.909 0.00 0.53 0.00 3.67
335 336 6.183360 GCTAAATAGACTGGACTTTTCGAACC 60.183 42.308 0.00 0.00 0.00 3.62
336 337 6.183360 GGCTAAATAGACTGGACTTTTCGAAC 60.183 42.308 0.00 0.00 0.00 3.95
337 338 5.873164 GGCTAAATAGACTGGACTTTTCGAA 59.127 40.000 0.00 0.00 0.00 3.71
338 339 5.416947 GGCTAAATAGACTGGACTTTTCGA 58.583 41.667 0.00 0.00 0.00 3.71
339 340 4.267928 CGGCTAAATAGACTGGACTTTTCG 59.732 45.833 0.00 0.00 0.00 3.46
340 341 5.176592 ACGGCTAAATAGACTGGACTTTTC 58.823 41.667 0.00 0.00 0.00 2.29
341 342 5.161943 ACGGCTAAATAGACTGGACTTTT 57.838 39.130 0.00 0.00 0.00 2.27
342 343 4.820894 ACGGCTAAATAGACTGGACTTT 57.179 40.909 0.00 0.00 0.00 2.66
343 344 4.020485 ACAACGGCTAAATAGACTGGACTT 60.020 41.667 0.00 0.00 0.00 3.01
344 345 3.514309 ACAACGGCTAAATAGACTGGACT 59.486 43.478 0.00 0.00 0.00 3.85
345 346 3.858247 ACAACGGCTAAATAGACTGGAC 58.142 45.455 0.00 0.00 0.00 4.02
346 347 4.020928 TCAACAACGGCTAAATAGACTGGA 60.021 41.667 0.00 0.00 0.00 3.86
347 348 4.250464 TCAACAACGGCTAAATAGACTGG 58.750 43.478 0.00 0.00 0.00 4.00
348 349 5.856126 TTCAACAACGGCTAAATAGACTG 57.144 39.130 0.00 0.00 0.00 3.51
349 350 7.604927 TGTAATTCAACAACGGCTAAATAGACT 59.395 33.333 0.00 0.00 0.00 3.24
350 351 7.745015 TGTAATTCAACAACGGCTAAATAGAC 58.255 34.615 0.00 0.00 0.00 2.59
351 352 7.908827 TGTAATTCAACAACGGCTAAATAGA 57.091 32.000 0.00 0.00 0.00 1.98
352 353 8.394877 TCATGTAATTCAACAACGGCTAAATAG 58.605 33.333 0.00 0.00 32.02 1.73
353 354 8.270080 TCATGTAATTCAACAACGGCTAAATA 57.730 30.769 0.00 0.00 32.02 1.40
354 355 7.151999 TCATGTAATTCAACAACGGCTAAAT 57.848 32.000 0.00 0.00 32.02 1.40
355 356 6.561737 TCATGTAATTCAACAACGGCTAAA 57.438 33.333 0.00 0.00 32.02 1.85
356 357 6.375377 GTTCATGTAATTCAACAACGGCTAA 58.625 36.000 0.00 0.00 32.02 3.09
357 358 5.106475 GGTTCATGTAATTCAACAACGGCTA 60.106 40.000 0.00 0.00 32.02 3.93
358 359 4.320935 GGTTCATGTAATTCAACAACGGCT 60.321 41.667 0.00 0.00 32.02 5.52
359 360 3.917985 GGTTCATGTAATTCAACAACGGC 59.082 43.478 0.00 0.00 32.02 5.68
360 361 5.371115 AGGTTCATGTAATTCAACAACGG 57.629 39.130 0.00 0.00 32.02 4.44
361 362 5.116983 GCAAGGTTCATGTAATTCAACAACG 59.883 40.000 0.00 0.00 32.02 4.10
362 363 5.982516 TGCAAGGTTCATGTAATTCAACAAC 59.017 36.000 0.00 0.00 32.02 3.32
363 364 6.154203 TGCAAGGTTCATGTAATTCAACAA 57.846 33.333 0.00 0.00 32.02 2.83
364 365 5.781210 TGCAAGGTTCATGTAATTCAACA 57.219 34.783 0.00 0.00 0.00 3.33
365 366 6.091169 CCAATGCAAGGTTCATGTAATTCAAC 59.909 38.462 0.00 0.00 0.00 3.18
366 367 6.164876 CCAATGCAAGGTTCATGTAATTCAA 58.835 36.000 0.00 0.00 0.00 2.69
367 368 5.722263 CCAATGCAAGGTTCATGTAATTCA 58.278 37.500 0.00 0.00 0.00 2.57
368 369 4.567959 GCCAATGCAAGGTTCATGTAATTC 59.432 41.667 9.94 0.00 37.47 2.17
369 370 4.020396 TGCCAATGCAAGGTTCATGTAATT 60.020 37.500 9.94 0.00 46.66 1.40
370 371 3.514706 TGCCAATGCAAGGTTCATGTAAT 59.485 39.130 9.94 0.00 46.66 1.89
371 372 2.896044 TGCCAATGCAAGGTTCATGTAA 59.104 40.909 9.94 0.00 46.66 2.41
372 373 2.523245 TGCCAATGCAAGGTTCATGTA 58.477 42.857 9.94 0.00 46.66 2.29
373 374 1.340088 TGCCAATGCAAGGTTCATGT 58.660 45.000 9.94 0.00 46.66 3.21
538 546 3.559069 AGATGGGACGGACGTAGATAAA 58.441 45.455 0.00 0.00 0.00 1.40
553 561 3.366273 CGGTGTCAACAAAATGAGATGGG 60.366 47.826 0.00 0.00 0.00 4.00
574 582 2.202690 TCTGCACGCCGGATTACG 60.203 61.111 5.05 0.27 43.80 3.18
612 628 1.469917 CAGTGTTTCAAACTGCAGCG 58.530 50.000 15.27 2.42 38.72 5.18
648 734 2.208640 TGCCCCCTCCCAAGTGTA 59.791 61.111 0.00 0.00 0.00 2.90
650 736 4.366684 GGTGCCCCCTCCCAAGTG 62.367 72.222 0.00 0.00 0.00 3.16
651 737 4.938756 TGGTGCCCCCTCCCAAGT 62.939 66.667 0.00 0.00 0.00 3.16
652 738 3.589542 TTGGTGCCCCCTCCCAAG 61.590 66.667 0.00 0.00 33.43 3.61
653 739 3.909651 GTTGGTGCCCCCTCCCAA 61.910 66.667 0.00 0.00 35.93 4.12
663 749 0.730155 CACATGCATGACGTTGGTGC 60.730 55.000 32.75 12.13 39.26 5.01
667 756 1.243342 ACCCCACATGCATGACGTTG 61.243 55.000 32.75 19.38 0.00 4.10
668 757 1.074775 ACCCCACATGCATGACGTT 59.925 52.632 32.75 7.78 0.00 3.99
704 793 0.110823 CTAACGGCCGAATTATGCGC 60.111 55.000 35.90 0.00 0.00 6.09
786 875 2.064762 GAATGATTCCTCGATCGGCTG 58.935 52.381 16.41 6.02 0.00 4.85
836 930 2.203195 TGCTCGCAACTTGCTGGT 60.203 55.556 11.93 0.00 42.25 4.00
837 931 0.950555 TAGTGCTCGCAACTTGCTGG 60.951 55.000 11.93 5.52 42.25 4.85
936 1030 0.969894 ACAGTGCACACTCTACTCCC 59.030 55.000 21.04 0.00 40.20 4.30
959 1053 0.725686 TCTCTGCTACACGTCTACGC 59.274 55.000 1.74 0.00 44.43 4.42
960 1054 2.415857 ACTTCTCTGCTACACGTCTACG 59.584 50.000 0.04 0.04 46.33 3.51
961 1055 4.630940 AGTACTTCTCTGCTACACGTCTAC 59.369 45.833 0.00 0.00 0.00 2.59
962 1056 4.829968 AGTACTTCTCTGCTACACGTCTA 58.170 43.478 0.00 0.00 0.00 2.59
981 1075 6.040955 CCTCCATGATCACTAGCAAGTTAGTA 59.959 42.308 0.00 0.00 31.97 1.82
982 1076 5.163364 CCTCCATGATCACTAGCAAGTTAGT 60.163 44.000 0.00 0.00 31.97 2.24
983 1077 5.163364 ACCTCCATGATCACTAGCAAGTTAG 60.163 44.000 0.00 0.00 31.97 2.34
1013 1107 1.603842 CTGCTGCCACCACTCCATA 59.396 57.895 0.00 0.00 0.00 2.74
1014 1108 2.353958 CTGCTGCCACCACTCCAT 59.646 61.111 0.00 0.00 0.00 3.41
1015 1109 4.648626 GCTGCTGCCACCACTCCA 62.649 66.667 3.85 0.00 0.00 3.86
1468 3171 5.423015 ACTTCTGAATGTCGTGCTTCATAT 58.577 37.500 0.00 0.00 31.39 1.78
1574 4304 5.049818 CCAATCTAGCTTTTGATCATCGGAC 60.050 44.000 0.00 0.00 0.00 4.79
1963 5202 8.337532 TGATGTCATATTTCAGTAAATTGCTCG 58.662 33.333 0.00 0.00 36.67 5.03
2667 6271 8.251026 CCACTACACTACTCAATTATCACTCAA 58.749 37.037 0.00 0.00 0.00 3.02
2964 7790 9.771534 ATAAATTCTTGCATACTCTTCTACTCC 57.228 33.333 0.00 0.00 0.00 3.85
2991 7817 2.416747 TCCATCTCGTTTGCTTGACAG 58.583 47.619 0.00 0.00 0.00 3.51
3177 8004 6.681729 AAGGAAGTACCAAACATCTCACTA 57.318 37.500 0.00 0.00 42.04 2.74
3219 8046 5.594317 GCTTCTAGGGCATATTTCCTTCAAA 59.406 40.000 0.00 0.00 34.75 2.69
3328 8156 6.983474 TTTGTCTATGTATCCACACATGTG 57.017 37.500 24.25 24.25 45.23 3.21
3379 8207 4.111375 TCTTTGATCAACGAGCTAGTCC 57.889 45.455 7.89 0.00 0.00 3.85
3434 8264 8.690203 AATGATGTGATCCCGTTAATCAAATA 57.310 30.769 0.00 0.00 32.39 1.40
3479 8309 3.681874 GCTAAGCTAACGGATGGGTCTTT 60.682 47.826 0.00 0.00 0.00 2.52
3591 8421 6.553953 TTGATAGCACACAAGGTATTCCTA 57.446 37.500 0.00 0.00 44.35 2.94
3743 8573 6.306199 AGGCTTATTATGATGTGCATTACCA 58.694 36.000 0.00 0.00 38.44 3.25
3799 8629 3.181475 ACTCGTTCCGTAATGCATCATCT 60.181 43.478 0.00 0.00 0.00 2.90
3890 8720 2.325583 TCCCTTTGTCATCGGTATGC 57.674 50.000 0.00 0.00 32.76 3.14
3914 8744 2.875933 CAAACCGGTATGACAACACACT 59.124 45.455 8.00 0.00 0.00 3.55
3917 8747 3.059188 CAGTCAAACCGGTATGACAACAC 60.059 47.826 8.00 0.00 46.55 3.32
3928 8758 5.005779 CGAAGATCTTTATCAGTCAAACCGG 59.994 44.000 9.87 0.00 34.28 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.