Multiple sequence alignment - TraesCS2D01G063300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G063300 chr2D 100.000 2336 0 0 1 2336 27266217 27268552 0.000000e+00 4314.0
1 TraesCS2D01G063300 chr2D 92.147 191 14 1 2146 2335 638155511 638155701 3.830000e-68 268.0
2 TraesCS2D01G063300 chr2D 91.710 193 13 3 2147 2336 525408228 525408420 4.950000e-67 265.0
3 TraesCS2D01G063300 chr2D 91.623 191 14 2 2146 2335 641491314 641491125 1.780000e-66 263.0
4 TraesCS2D01G063300 chr2D 84.000 150 14 6 116 263 620523252 620523393 4.050000e-28 135.0
5 TraesCS2D01G063300 chr2D 82.857 105 15 3 128 232 459796100 459796201 8.890000e-15 91.6
6 TraesCS2D01G063300 chr2A 91.489 1034 52 19 334 1355 29593137 29594146 0.000000e+00 1389.0
7 TraesCS2D01G063300 chr2A 88.172 372 19 14 1443 1796 29594214 29594578 9.980000e-114 420.0
8 TraesCS2D01G063300 chr2A 82.081 346 35 8 1798 2119 29594617 29594959 1.060000e-68 270.0
9 TraesCS2D01G063300 chr2B 89.332 778 35 14 610 1355 42956743 42957504 0.000000e+00 933.0
10 TraesCS2D01G063300 chr2B 82.857 455 29 23 1351 1762 42957532 42957980 1.710000e-96 363.0
11 TraesCS2D01G063300 chr2B 91.200 125 9 1 488 612 42956595 42956717 3.990000e-38 169.0
12 TraesCS2D01G063300 chr6A 91.282 195 16 1 2142 2335 592431886 592431692 4.950000e-67 265.0
13 TraesCS2D01G063300 chr4D 91.099 191 15 2 2146 2335 12695890 12696079 8.280000e-65 257.0
14 TraesCS2D01G063300 chr4D 91.053 190 16 1 2147 2335 483171804 483171615 2.980000e-64 255.0
15 TraesCS2D01G063300 chr1A 91.579 190 11 5 2146 2333 386476262 386476076 8.280000e-65 257.0
16 TraesCS2D01G063300 chr1A 88.462 208 19 5 2131 2335 371175144 371174939 1.790000e-61 246.0
17 TraesCS2D01G063300 chr5D 86.996 223 24 5 2116 2335 541594442 541594662 1.790000e-61 246.0
18 TraesCS2D01G063300 chr5A 81.548 168 21 6 122 280 514038860 514038694 1.880000e-26 130.0
19 TraesCS2D01G063300 chr6D 79.562 137 26 2 124 258 142990338 142990474 1.910000e-16 97.1
20 TraesCS2D01G063300 chr3D 90.196 51 5 0 2070 2120 584149631 584149581 1.500000e-07 67.6
21 TraesCS2D01G063300 chr7A 88.679 53 5 1 1993 2044 671728559 671728507 1.940000e-06 63.9
22 TraesCS2D01G063300 chr1D 90.909 44 2 2 1993 2035 144665720 144665678 9.020000e-05 58.4
23 TraesCS2D01G063300 chr1B 90.698 43 4 0 1993 2035 194356135 194356093 9.020000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G063300 chr2D 27266217 27268552 2335 False 4314.000000 4314 100.000000 1 2336 1 chr2D.!!$F1 2335
1 TraesCS2D01G063300 chr2A 29593137 29594959 1822 False 693.000000 1389 87.247333 334 2119 3 chr2A.!!$F1 1785
2 TraesCS2D01G063300 chr2B 42956595 42957980 1385 False 488.333333 933 87.796333 488 1762 3 chr2B.!!$F1 1274

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.326595 TATTTCTGGCTTGTCGGGCA 59.673 50.0 0.0 0.0 39.84 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1431 1536 0.45339 CTTGAAAGAGCCCATTCGCC 59.547 55.0 0.0 0.0 0.0 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.951347 ATTGAAGACTTCATATTTCTGGCTT 57.049 32.000 18.38 0.00 39.84 4.35
27 28 6.748333 TGAAGACTTCATATTTCTGGCTTG 57.252 37.500 13.99 0.00 34.08 4.01
28 29 6.240894 TGAAGACTTCATATTTCTGGCTTGT 58.759 36.000 13.99 0.00 34.08 3.16
29 30 6.372659 TGAAGACTTCATATTTCTGGCTTGTC 59.627 38.462 13.99 0.00 34.08 3.18
30 31 4.872691 AGACTTCATATTTCTGGCTTGTCG 59.127 41.667 0.00 0.00 0.00 4.35
31 32 3.941483 ACTTCATATTTCTGGCTTGTCGG 59.059 43.478 0.00 0.00 0.00 4.79
32 33 2.917933 TCATATTTCTGGCTTGTCGGG 58.082 47.619 0.00 0.00 0.00 5.14
33 34 1.334869 CATATTTCTGGCTTGTCGGGC 59.665 52.381 0.00 0.00 0.00 6.13
34 35 0.326595 TATTTCTGGCTTGTCGGGCA 59.673 50.000 0.00 0.00 39.84 5.36
35 36 0.539438 ATTTCTGGCTTGTCGGGCAA 60.539 50.000 0.00 0.00 41.12 4.52
45 46 3.410631 TTGTCGGGCAAGAGTTATTCA 57.589 42.857 0.00 0.00 32.52 2.57
46 47 3.627395 TGTCGGGCAAGAGTTATTCAT 57.373 42.857 0.00 0.00 0.00 2.57
47 48 3.950397 TGTCGGGCAAGAGTTATTCATT 58.050 40.909 0.00 0.00 0.00 2.57
48 49 5.092554 TGTCGGGCAAGAGTTATTCATTA 57.907 39.130 0.00 0.00 0.00 1.90
49 50 5.680619 TGTCGGGCAAGAGTTATTCATTAT 58.319 37.500 0.00 0.00 0.00 1.28
50 51 6.822442 TGTCGGGCAAGAGTTATTCATTATA 58.178 36.000 0.00 0.00 0.00 0.98
51 52 7.450074 TGTCGGGCAAGAGTTATTCATTATAT 58.550 34.615 0.00 0.00 0.00 0.86
52 53 7.936847 TGTCGGGCAAGAGTTATTCATTATATT 59.063 33.333 0.00 0.00 0.00 1.28
53 54 8.784043 GTCGGGCAAGAGTTATTCATTATATTT 58.216 33.333 0.00 0.00 0.00 1.40
54 55 9.349713 TCGGGCAAGAGTTATTCATTATATTTT 57.650 29.630 0.00 0.00 0.00 1.82
55 56 9.965824 CGGGCAAGAGTTATTCATTATATTTTT 57.034 29.630 0.00 0.00 0.00 1.94
75 76 6.582677 TTTTTGTTCAACATATGGATCGGT 57.417 33.333 7.80 0.00 0.00 4.69
76 77 6.582677 TTTTGTTCAACATATGGATCGGTT 57.417 33.333 7.80 0.00 0.00 4.44
77 78 6.582677 TTTGTTCAACATATGGATCGGTTT 57.417 33.333 7.80 0.00 0.00 3.27
78 79 6.582677 TTGTTCAACATATGGATCGGTTTT 57.417 33.333 7.80 0.00 0.00 2.43
79 80 6.582677 TGTTCAACATATGGATCGGTTTTT 57.417 33.333 7.80 0.00 0.00 1.94
101 102 6.827586 TTTTTCTTTCGTACATAATGCCCT 57.172 33.333 0.00 0.00 0.00 5.19
102 103 7.925043 TTTTTCTTTCGTACATAATGCCCTA 57.075 32.000 0.00 0.00 0.00 3.53
103 104 7.925043 TTTTCTTTCGTACATAATGCCCTAA 57.075 32.000 0.00 0.00 0.00 2.69
104 105 7.925043 TTTCTTTCGTACATAATGCCCTAAA 57.075 32.000 0.00 0.00 0.00 1.85
105 106 7.925043 TTCTTTCGTACATAATGCCCTAAAA 57.075 32.000 0.00 0.00 0.00 1.52
106 107 8.514330 TTCTTTCGTACATAATGCCCTAAAAT 57.486 30.769 0.00 0.00 0.00 1.82
107 108 8.514330 TCTTTCGTACATAATGCCCTAAAATT 57.486 30.769 0.00 0.00 0.00 1.82
108 109 9.616156 TCTTTCGTACATAATGCCCTAAAATTA 57.384 29.630 0.00 0.00 0.00 1.40
111 112 7.812648 TCGTACATAATGCCCTAAAATTATGC 58.187 34.615 12.88 1.29 44.89 3.14
112 113 7.445707 TCGTACATAATGCCCTAAAATTATGCA 59.554 33.333 12.88 0.00 44.89 3.96
113 114 8.243426 CGTACATAATGCCCTAAAATTATGCAT 58.757 33.333 3.79 3.79 44.89 3.96
114 115 9.573133 GTACATAATGCCCTAAAATTATGCATC 57.427 33.333 0.19 0.00 44.89 3.91
115 116 8.426569 ACATAATGCCCTAAAATTATGCATCT 57.573 30.769 0.19 0.00 44.89 2.90
116 117 9.532494 ACATAATGCCCTAAAATTATGCATCTA 57.468 29.630 0.19 0.00 44.89 1.98
153 154 8.810652 TTGCTAAAACACATCTAAATGTTTCC 57.189 30.769 3.06 0.00 45.86 3.13
154 155 8.177119 TGCTAAAACACATCTAAATGTTTCCT 57.823 30.769 3.06 0.00 45.86 3.36
155 156 9.290988 TGCTAAAACACATCTAAATGTTTCCTA 57.709 29.630 3.06 0.00 45.86 2.94
188 189 9.896645 ACACATCTAAGTCTTATGTCATTGATT 57.103 29.630 0.00 0.00 31.60 2.57
194 195 9.713740 CTAAGTCTTATGTCATTGATTTGAAGC 57.286 33.333 0.00 0.00 0.00 3.86
195 196 7.692460 AGTCTTATGTCATTGATTTGAAGCA 57.308 32.000 0.00 0.00 0.00 3.91
196 197 8.114331 AGTCTTATGTCATTGATTTGAAGCAA 57.886 30.769 0.00 0.00 38.80 3.91
197 198 8.579006 AGTCTTATGTCATTGATTTGAAGCAAA 58.421 29.630 0.00 0.00 37.88 3.68
198 199 8.857216 GTCTTATGTCATTGATTTGAAGCAAAG 58.143 33.333 0.00 0.00 37.88 2.77
199 200 8.795513 TCTTATGTCATTGATTTGAAGCAAAGA 58.204 29.630 0.00 0.00 37.88 2.52
200 201 9.582431 CTTATGTCATTGATTTGAAGCAAAGAT 57.418 29.630 3.47 0.00 37.88 2.40
201 202 9.932207 TTATGTCATTGATTTGAAGCAAAGATT 57.068 25.926 3.47 0.00 37.88 2.40
202 203 7.878477 TGTCATTGATTTGAAGCAAAGATTC 57.122 32.000 3.47 0.00 37.88 2.52
203 204 6.583427 TGTCATTGATTTGAAGCAAAGATTCG 59.417 34.615 3.47 0.00 37.88 3.34
204 205 6.583806 GTCATTGATTTGAAGCAAAGATTCGT 59.416 34.615 3.47 0.00 37.88 3.85
205 206 6.583427 TCATTGATTTGAAGCAAAGATTCGTG 59.417 34.615 0.00 0.00 37.88 4.35
206 207 5.437289 TGATTTGAAGCAAAGATTCGTGT 57.563 34.783 0.00 0.00 36.76 4.49
207 208 5.214417 TGATTTGAAGCAAAGATTCGTGTG 58.786 37.500 0.00 0.00 36.76 3.82
208 209 3.624326 TTGAAGCAAAGATTCGTGTGG 57.376 42.857 0.00 0.00 29.81 4.17
209 210 1.879380 TGAAGCAAAGATTCGTGTGGG 59.121 47.619 0.00 0.00 29.81 4.61
210 211 0.598065 AAGCAAAGATTCGTGTGGGC 59.402 50.000 0.00 0.00 0.00 5.36
211 212 0.537143 AGCAAAGATTCGTGTGGGCA 60.537 50.000 0.00 0.00 0.00 5.36
212 213 0.527565 GCAAAGATTCGTGTGGGCAT 59.472 50.000 0.00 0.00 0.00 4.40
213 214 1.067635 GCAAAGATTCGTGTGGGCATT 60.068 47.619 0.00 0.00 0.00 3.56
214 215 2.610232 GCAAAGATTCGTGTGGGCATTT 60.610 45.455 0.00 0.00 0.00 2.32
215 216 3.244976 CAAAGATTCGTGTGGGCATTTC 58.755 45.455 0.00 0.00 0.00 2.17
216 217 2.496899 AGATTCGTGTGGGCATTTCT 57.503 45.000 0.00 0.00 0.00 2.52
217 218 2.795329 AGATTCGTGTGGGCATTTCTT 58.205 42.857 0.00 0.00 0.00 2.52
218 219 3.157087 AGATTCGTGTGGGCATTTCTTT 58.843 40.909 0.00 0.00 0.00 2.52
219 220 3.573967 AGATTCGTGTGGGCATTTCTTTT 59.426 39.130 0.00 0.00 0.00 2.27
220 221 2.791383 TCGTGTGGGCATTTCTTTTG 57.209 45.000 0.00 0.00 0.00 2.44
221 222 2.028130 TCGTGTGGGCATTTCTTTTGT 58.972 42.857 0.00 0.00 0.00 2.83
222 223 2.034053 TCGTGTGGGCATTTCTTTTGTC 59.966 45.455 0.00 0.00 0.00 3.18
223 224 2.034558 CGTGTGGGCATTTCTTTTGTCT 59.965 45.455 0.00 0.00 0.00 3.41
224 225 3.490761 CGTGTGGGCATTTCTTTTGTCTT 60.491 43.478 0.00 0.00 0.00 3.01
225 226 4.441792 GTGTGGGCATTTCTTTTGTCTTT 58.558 39.130 0.00 0.00 0.00 2.52
226 227 4.875536 GTGTGGGCATTTCTTTTGTCTTTT 59.124 37.500 0.00 0.00 0.00 2.27
227 228 5.353956 GTGTGGGCATTTCTTTTGTCTTTTT 59.646 36.000 0.00 0.00 0.00 1.94
228 229 5.584251 TGTGGGCATTTCTTTTGTCTTTTTC 59.416 36.000 0.00 0.00 0.00 2.29
229 230 5.817296 GTGGGCATTTCTTTTGTCTTTTTCT 59.183 36.000 0.00 0.00 0.00 2.52
230 231 6.316140 GTGGGCATTTCTTTTGTCTTTTTCTT 59.684 34.615 0.00 0.00 0.00 2.52
231 232 6.883756 TGGGCATTTCTTTTGTCTTTTTCTTT 59.116 30.769 0.00 0.00 0.00 2.52
232 233 7.392953 TGGGCATTTCTTTTGTCTTTTTCTTTT 59.607 29.630 0.00 0.00 0.00 2.27
233 234 8.243426 GGGCATTTCTTTTGTCTTTTTCTTTTT 58.757 29.630 0.00 0.00 0.00 1.94
240 241 9.150348 TCTTTTGTCTTTTTCTTTTTAGCTTGG 57.850 29.630 0.00 0.00 0.00 3.61
241 242 8.840833 TTTTGTCTTTTTCTTTTTAGCTTGGT 57.159 26.923 0.00 0.00 0.00 3.67
242 243 8.840833 TTTGTCTTTTTCTTTTTAGCTTGGTT 57.159 26.923 0.00 0.00 0.00 3.67
243 244 9.930693 TTTGTCTTTTTCTTTTTAGCTTGGTTA 57.069 25.926 0.00 0.00 0.00 2.85
244 245 9.930693 TTGTCTTTTTCTTTTTAGCTTGGTTAA 57.069 25.926 0.00 0.00 0.00 2.01
245 246 9.581099 TGTCTTTTTCTTTTTAGCTTGGTTAAG 57.419 29.630 0.00 0.00 36.97 1.85
246 247 9.582431 GTCTTTTTCTTTTTAGCTTGGTTAAGT 57.418 29.630 0.00 0.00 36.27 2.24
247 248 9.797556 TCTTTTTCTTTTTAGCTTGGTTAAGTC 57.202 29.630 0.00 0.00 36.27 3.01
248 249 9.581099 CTTTTTCTTTTTAGCTTGGTTAAGTCA 57.419 29.630 0.00 0.00 36.27 3.41
257 258 9.515226 TTTAGCTTGGTTAAGTCATTTAGATGT 57.485 29.630 0.00 0.00 36.27 3.06
259 260 8.494016 AGCTTGGTTAAGTCATTTAGATGTAC 57.506 34.615 0.00 0.00 36.27 2.90
260 261 8.100791 AGCTTGGTTAAGTCATTTAGATGTACA 58.899 33.333 0.00 0.00 36.27 2.90
261 262 8.726988 GCTTGGTTAAGTCATTTAGATGTACAA 58.273 33.333 0.00 0.00 36.27 2.41
280 281 9.698309 ATGTACAATAACTATGACACATCTAGC 57.302 33.333 0.00 0.00 0.00 3.42
281 282 8.914011 TGTACAATAACTATGACACATCTAGCT 58.086 33.333 0.00 0.00 0.00 3.32
284 285 9.973450 ACAATAACTATGACACATCTAGCTAAG 57.027 33.333 0.00 0.00 0.00 2.18
285 286 8.920665 CAATAACTATGACACATCTAGCTAAGC 58.079 37.037 0.00 0.00 0.00 3.09
286 287 6.723298 AACTATGACACATCTAGCTAAGCT 57.277 37.500 0.00 0.00 43.41 3.74
287 288 6.723298 ACTATGACACATCTAGCTAAGCTT 57.277 37.500 3.48 3.48 40.44 3.74
288 289 7.118496 ACTATGACACATCTAGCTAAGCTTT 57.882 36.000 3.20 0.00 40.44 3.51
289 290 8.239038 ACTATGACACATCTAGCTAAGCTTTA 57.761 34.615 3.20 0.00 40.44 1.85
290 291 8.865090 ACTATGACACATCTAGCTAAGCTTTAT 58.135 33.333 3.20 0.00 40.44 1.40
291 292 9.703892 CTATGACACATCTAGCTAAGCTTTATT 57.296 33.333 3.20 0.00 40.44 1.40
292 293 8.970859 ATGACACATCTAGCTAAGCTTTATTT 57.029 30.769 3.20 0.00 40.44 1.40
293 294 8.201554 TGACACATCTAGCTAAGCTTTATTTG 57.798 34.615 3.20 0.00 40.44 2.32
294 295 7.280876 TGACACATCTAGCTAAGCTTTATTTGG 59.719 37.037 3.20 0.00 40.44 3.28
295 296 7.112779 ACACATCTAGCTAAGCTTTATTTGGT 58.887 34.615 3.20 0.00 40.44 3.67
296 297 7.066284 ACACATCTAGCTAAGCTTTATTTGGTG 59.934 37.037 3.20 7.21 40.44 4.17
297 298 6.038714 ACATCTAGCTAAGCTTTATTTGGTGC 59.961 38.462 3.20 0.00 40.44 5.01
298 299 3.764885 AGCTAAGCTTTATTTGGTGCG 57.235 42.857 3.20 0.00 33.89 5.34
299 300 3.081804 AGCTAAGCTTTATTTGGTGCGT 58.918 40.909 3.20 0.00 33.89 5.24
300 301 3.506067 AGCTAAGCTTTATTTGGTGCGTT 59.494 39.130 3.20 0.00 33.89 4.84
301 302 4.022329 AGCTAAGCTTTATTTGGTGCGTTT 60.022 37.500 3.20 0.00 33.89 3.60
302 303 5.182380 AGCTAAGCTTTATTTGGTGCGTTTA 59.818 36.000 3.20 0.00 33.89 2.01
303 304 6.033966 GCTAAGCTTTATTTGGTGCGTTTAT 58.966 36.000 3.20 0.00 0.00 1.40
304 305 6.530181 GCTAAGCTTTATTTGGTGCGTTTATT 59.470 34.615 3.20 0.00 0.00 1.40
305 306 6.944557 AAGCTTTATTTGGTGCGTTTATTC 57.055 33.333 0.00 0.00 0.00 1.75
306 307 6.267496 AGCTTTATTTGGTGCGTTTATTCT 57.733 33.333 0.00 0.00 0.00 2.40
307 308 6.687604 AGCTTTATTTGGTGCGTTTATTCTT 58.312 32.000 0.00 0.00 0.00 2.52
308 309 7.151976 AGCTTTATTTGGTGCGTTTATTCTTT 58.848 30.769 0.00 0.00 0.00 2.52
309 310 8.301002 AGCTTTATTTGGTGCGTTTATTCTTTA 58.699 29.630 0.00 0.00 0.00 1.85
310 311 9.083080 GCTTTATTTGGTGCGTTTATTCTTTAT 57.917 29.630 0.00 0.00 0.00 1.40
316 317 9.915629 TTTGGTGCGTTTATTCTTTATATTTGT 57.084 25.926 0.00 0.00 0.00 2.83
317 318 9.915629 TTGGTGCGTTTATTCTTTATATTTGTT 57.084 25.926 0.00 0.00 0.00 2.83
359 360 7.740519 AAAGACATGTGAAAGAAAAGAAACG 57.259 32.000 1.15 0.00 0.00 3.60
365 366 6.693315 TGTGAAAGAAAAGAAACGAGGATT 57.307 33.333 0.00 0.00 0.00 3.01
374 375 6.911250 AAAGAAACGAGGATTAACCCATTT 57.089 33.333 0.00 0.00 40.05 2.32
375 376 8.411991 AAAAGAAACGAGGATTAACCCATTTA 57.588 30.769 0.00 0.00 40.05 1.40
378 379 8.672823 AGAAACGAGGATTAACCCATTTATAC 57.327 34.615 0.00 0.00 40.05 1.47
379 380 8.491958 AGAAACGAGGATTAACCCATTTATACT 58.508 33.333 0.00 0.00 40.05 2.12
381 383 8.446599 AACGAGGATTAACCCATTTATACTTG 57.553 34.615 0.00 0.00 40.05 3.16
387 389 7.451566 GGATTAACCCATTTATACTTGCTCCAT 59.548 37.037 0.00 0.00 0.00 3.41
430 432 8.707938 AGAAAGAAAGAAAATGTTTTGAGGTG 57.292 30.769 0.00 0.00 0.00 4.00
440 442 6.909550 AATGTTTTGAGGTGGTTATGCTTA 57.090 33.333 0.00 0.00 0.00 3.09
443 445 4.650972 TTTGAGGTGGTTATGCTTAGGT 57.349 40.909 0.00 0.00 0.00 3.08
449 451 6.441284 TGAGGTGGTTATGCTTAGGTTTAGTA 59.559 38.462 0.00 0.00 0.00 1.82
455 457 7.840716 TGGTTATGCTTAGGTTTAGTACTAGGA 59.159 37.037 2.23 0.00 0.00 2.94
462 464 2.032675 GGTTTAGTACTAGGAGACGCGG 59.967 54.545 12.47 0.00 0.00 6.46
463 465 2.680339 GTTTAGTACTAGGAGACGCGGT 59.320 50.000 12.47 0.00 0.00 5.68
464 466 2.231215 TAGTACTAGGAGACGCGGTC 57.769 55.000 12.47 6.63 0.00 4.79
465 467 0.809241 AGTACTAGGAGACGCGGTCG 60.809 60.000 12.47 0.00 37.67 4.79
478 480 1.966493 GCGGTCGTATGTTGGTGCTG 61.966 60.000 0.00 0.00 0.00 4.41
493 495 1.197721 GTGCTGTACATTGGTGTGCTC 59.802 52.381 0.00 0.00 41.01 4.26
541 543 0.727398 GCCTTGTGTTATCAGGCGAC 59.273 55.000 0.00 0.00 35.86 5.19
612 646 4.832266 TGGAAATGGACACAGCAACTAATT 59.168 37.500 0.00 0.00 0.00 1.40
613 647 6.007076 TGGAAATGGACACAGCAACTAATTA 58.993 36.000 0.00 0.00 0.00 1.40
614 648 6.491745 TGGAAATGGACACAGCAACTAATTAA 59.508 34.615 0.00 0.00 0.00 1.40
615 649 7.178274 TGGAAATGGACACAGCAACTAATTAAT 59.822 33.333 0.00 0.00 0.00 1.40
713 752 4.796231 CTCCCGGCCGTGAACGAG 62.796 72.222 26.12 15.59 43.02 4.18
856 899 3.863407 GGATCTCCCAACACACTCC 57.137 57.895 0.00 0.00 34.14 3.85
995 1046 3.983494 CCGATCTCGCTCCCGCAT 61.983 66.667 0.00 0.00 38.18 4.73
997 1048 2.730733 GATCTCGCTCCCGCATCA 59.269 61.111 0.00 0.00 35.30 3.07
1329 1396 2.284625 ACCATGCTCGTCCCAGGA 60.285 61.111 0.00 0.00 0.00 3.86
1355 1426 4.105486 TGAGACGATCAACGATGATGTTC 58.895 43.478 13.41 8.66 46.30 3.18
1357 1428 2.540101 GACGATCAACGATGATGTTCCC 59.460 50.000 13.41 0.00 46.30 3.97
1361 1432 4.494690 CGATCAACGATGATGTTCCCTTTG 60.495 45.833 13.41 0.00 46.30 2.77
1362 1433 4.014569 TCAACGATGATGTTCCCTTTGA 57.985 40.909 0.00 0.00 0.00 2.69
1363 1434 4.588899 TCAACGATGATGTTCCCTTTGAT 58.411 39.130 0.00 0.00 0.00 2.57
1371 1476 2.178580 TGTTCCCTTTGATTGATGGCC 58.821 47.619 0.00 0.00 0.00 5.36
1409 1514 3.585732 AGCTAGGGTTGTAGGTAGCAAAA 59.414 43.478 3.26 0.00 40.37 2.44
1410 1515 3.688185 GCTAGGGTTGTAGGTAGCAAAAC 59.312 47.826 0.00 0.00 38.23 2.43
1411 1516 2.774687 AGGGTTGTAGGTAGCAAAACG 58.225 47.619 0.00 0.00 0.00 3.60
1412 1517 2.105306 AGGGTTGTAGGTAGCAAAACGT 59.895 45.455 0.00 0.00 0.00 3.99
1413 1518 2.880268 GGGTTGTAGGTAGCAAAACGTT 59.120 45.455 0.00 0.00 0.00 3.99
1414 1519 3.316029 GGGTTGTAGGTAGCAAAACGTTT 59.684 43.478 7.96 7.96 0.00 3.60
1415 1520 4.202040 GGGTTGTAGGTAGCAAAACGTTTT 60.202 41.667 20.26 20.26 0.00 2.43
1416 1521 4.971830 GGTTGTAGGTAGCAAAACGTTTTC 59.028 41.667 22.90 16.75 0.00 2.29
1430 1535 3.155344 CGTTTTCGCATATGGATCGTC 57.845 47.619 4.56 0.00 36.22 4.20
1431 1536 2.408487 CGTTTTCGCATATGGATCGTCG 60.408 50.000 4.56 0.00 36.22 5.12
1432 1537 1.778334 TTTCGCATATGGATCGTCGG 58.222 50.000 4.56 0.00 0.00 4.79
1433 1538 0.666274 TTCGCATATGGATCGTCGGC 60.666 55.000 4.56 0.00 0.00 5.54
1434 1539 2.436539 CGCATATGGATCGTCGGCG 61.437 63.158 1.15 1.15 39.92 6.46
1446 1580 1.745489 GTCGGCGAATGGGCTCTTT 60.745 57.895 12.92 0.00 39.52 2.52
1461 1595 5.010617 TGGGCTCTTTCAAGTTTTGTATTCC 59.989 40.000 0.00 0.00 0.00 3.01
1545 1679 6.721571 ACCTTAATTTCGGATACATATGCG 57.278 37.500 1.58 6.47 46.81 4.73
1593 1749 6.416415 TGCATGGAAGATTGGCAAAATATTT 58.584 32.000 3.01 0.00 0.00 1.40
1594 1750 6.539464 TGCATGGAAGATTGGCAAAATATTTC 59.461 34.615 3.01 4.24 0.00 2.17
1595 1751 6.539464 GCATGGAAGATTGGCAAAATATTTCA 59.461 34.615 3.01 0.00 0.00 2.69
1597 1753 8.948145 CATGGAAGATTGGCAAAATATTTCAAA 58.052 29.630 3.01 0.00 0.00 2.69
1598 1754 8.321650 TGGAAGATTGGCAAAATATTTCAAAC 57.678 30.769 3.01 1.38 0.00 2.93
1599 1755 7.935755 TGGAAGATTGGCAAAATATTTCAAACA 59.064 29.630 3.01 0.00 0.00 2.83
1600 1756 8.445493 GGAAGATTGGCAAAATATTTCAAACAG 58.555 33.333 3.01 0.00 0.00 3.16
1601 1757 8.907222 AAGATTGGCAAAATATTTCAAACAGT 57.093 26.923 3.01 0.00 0.00 3.55
1632 1804 1.260561 CTGTAAAGCTCAACGCGTTGT 59.739 47.619 41.16 28.41 45.59 3.32
1633 1805 1.004398 TGTAAAGCTCAACGCGTTGTG 60.004 47.619 41.16 38.77 45.59 3.33
1745 1918 3.808728 CCATGACCAATTCGACCATACT 58.191 45.455 0.00 0.00 0.00 2.12
1770 1945 7.261325 TCTAATCTTTCCGAAAGTCATGAGAG 58.739 38.462 18.32 9.00 39.52 3.20
1776 1951 5.405935 TCCGAAAGTCATGAGAGAATTCA 57.594 39.130 8.44 0.00 0.00 2.57
1826 2039 4.877282 TGCAGGGCTAAAAATGTTAACAC 58.123 39.130 11.22 0.00 0.00 3.32
1830 2043 5.476945 CAGGGCTAAAAATGTTAACACTCCT 59.523 40.000 11.22 0.00 0.00 3.69
1853 2066 4.944962 TTATCTTGGAACTGATTGTGCG 57.055 40.909 0.00 0.00 0.00 5.34
1857 2070 2.772568 TGGAACTGATTGTGCGTTTG 57.227 45.000 0.00 0.00 0.00 2.93
1860 2073 2.032799 GGAACTGATTGTGCGTTTGTGA 59.967 45.455 0.00 0.00 0.00 3.58
1878 2091 5.596836 TGTGACTTCTTTCCTTGCAAAAT 57.403 34.783 0.00 0.00 0.00 1.82
1883 2096 7.706607 GTGACTTCTTTCCTTGCAAAATAAAGT 59.293 33.333 19.32 14.90 32.47 2.66
1892 2105 7.551585 TCCTTGCAAAATAAAGTTTTGACAGA 58.448 30.769 15.22 5.11 40.73 3.41
1895 2108 8.939201 TTGCAAAATAAAGTTTTGACAGATCA 57.061 26.923 15.22 2.43 40.73 2.92
1897 2110 8.196771 TGCAAAATAAAGTTTTGACAGATCACT 58.803 29.630 15.22 0.00 40.73 3.41
1901 2114 5.841957 AAAGTTTTGACAGATCACTGCTT 57.158 34.783 0.00 0.00 46.95 3.91
1902 2115 4.825546 AGTTTTGACAGATCACTGCTTG 57.174 40.909 0.00 0.00 46.95 4.01
1983 2196 9.487442 TGTCTAAAATTAATAGGAAGGCCAATT 57.513 29.630 5.01 0.00 36.29 2.32
1991 2204 3.806949 AGGAAGGCCAATTTAGTGACA 57.193 42.857 5.01 0.00 36.29 3.58
2009 2246 6.000219 AGTGACACATGAGATTGCTAAGTTT 59.000 36.000 8.59 0.00 0.00 2.66
2011 2248 7.332926 AGTGACACATGAGATTGCTAAGTTTAG 59.667 37.037 8.59 0.00 0.00 1.85
2018 2255 9.334693 CATGAGATTGCTAAGTTTAGTTTTGAC 57.665 33.333 0.00 0.00 33.32 3.18
2020 2257 8.898761 TGAGATTGCTAAGTTTAGTTTTGACAA 58.101 29.630 1.28 0.00 33.32 3.18
2032 2269 9.659830 GTTTAGTTTTGACAATAAATCAGACGT 57.340 29.630 0.00 0.00 0.00 4.34
2038 2275 7.962964 TTGACAATAAATCAGACGTTCTTCT 57.037 32.000 0.00 0.00 0.00 2.85
2053 2290 8.068380 AGACGTTCTTCTTTTTAATAGTTGTGC 58.932 33.333 0.00 0.00 0.00 4.57
2057 2294 6.664515 TCTTCTTTTTAATAGTTGTGCGTGG 58.335 36.000 0.00 0.00 0.00 4.94
2073 2310 1.129251 CGTGGCACTTGCTGTTATGAG 59.871 52.381 16.72 0.00 41.70 2.90
2143 2380 8.500753 TTTTTAAGAGAAAGCACAGAGTTACA 57.499 30.769 0.00 0.00 0.00 2.41
2144 2381 7.715265 TTTAAGAGAAAGCACAGAGTTACAG 57.285 36.000 0.00 0.00 0.00 2.74
2145 2382 4.946478 AGAGAAAGCACAGAGTTACAGT 57.054 40.909 0.00 0.00 0.00 3.55
2146 2383 5.283457 AGAGAAAGCACAGAGTTACAGTT 57.717 39.130 0.00 0.00 0.00 3.16
2147 2384 5.675538 AGAGAAAGCACAGAGTTACAGTTT 58.324 37.500 0.00 0.00 0.00 2.66
2148 2385 6.116126 AGAGAAAGCACAGAGTTACAGTTTT 58.884 36.000 0.00 0.00 0.00 2.43
2149 2386 6.599638 AGAGAAAGCACAGAGTTACAGTTTTT 59.400 34.615 0.00 0.00 0.00 1.94
2176 2413 9.559732 TTTGTGAGAAAACTTCTGATCTATTCA 57.440 29.630 0.00 0.00 40.87 2.57
2177 2414 9.730705 TTGTGAGAAAACTTCTGATCTATTCAT 57.269 29.630 0.00 0.00 40.87 2.57
2178 2415 9.376075 TGTGAGAAAACTTCTGATCTATTCATC 57.624 33.333 0.00 0.00 40.87 2.92
2179 2416 9.598517 GTGAGAAAACTTCTGATCTATTCATCT 57.401 33.333 0.00 0.00 40.87 2.90
2189 2426 9.503399 TTCTGATCTATTCATCTTCAATCATGG 57.497 33.333 0.00 0.00 32.72 3.66
2190 2427 7.606839 TCTGATCTATTCATCTTCAATCATGGC 59.393 37.037 0.00 0.00 32.72 4.40
2191 2428 7.228590 TGATCTATTCATCTTCAATCATGGCA 58.771 34.615 0.00 0.00 0.00 4.92
2192 2429 7.390718 TGATCTATTCATCTTCAATCATGGCAG 59.609 37.037 0.00 0.00 0.00 4.85
2193 2430 6.598503 TCTATTCATCTTCAATCATGGCAGT 58.401 36.000 0.00 0.00 0.00 4.40
2194 2431 7.738847 TCTATTCATCTTCAATCATGGCAGTA 58.261 34.615 0.00 0.00 0.00 2.74
2195 2432 6.630444 ATTCATCTTCAATCATGGCAGTAC 57.370 37.500 0.00 0.00 0.00 2.73
2196 2433 5.101648 TCATCTTCAATCATGGCAGTACA 57.898 39.130 0.00 0.00 0.00 2.90
2197 2434 5.499313 TCATCTTCAATCATGGCAGTACAA 58.501 37.500 0.00 0.00 0.00 2.41
2198 2435 5.355071 TCATCTTCAATCATGGCAGTACAAC 59.645 40.000 0.00 0.00 0.00 3.32
2199 2436 4.650734 TCTTCAATCATGGCAGTACAACA 58.349 39.130 0.00 0.00 0.00 3.33
2200 2437 5.069318 TCTTCAATCATGGCAGTACAACAA 58.931 37.500 0.00 0.00 0.00 2.83
2201 2438 5.534278 TCTTCAATCATGGCAGTACAACAAA 59.466 36.000 0.00 0.00 0.00 2.83
2202 2439 5.119931 TCAATCATGGCAGTACAACAAAC 57.880 39.130 0.00 0.00 0.00 2.93
2203 2440 4.582240 TCAATCATGGCAGTACAACAAACA 59.418 37.500 0.00 0.00 0.00 2.83
2204 2441 3.980646 TCATGGCAGTACAACAAACAC 57.019 42.857 0.00 0.00 0.00 3.32
2205 2442 2.621055 TCATGGCAGTACAACAAACACC 59.379 45.455 0.00 0.00 0.00 4.16
2206 2443 2.130272 TGGCAGTACAACAAACACCA 57.870 45.000 0.00 0.00 0.00 4.17
2207 2444 2.020720 TGGCAGTACAACAAACACCAG 58.979 47.619 0.00 0.00 0.00 4.00
2208 2445 2.294074 GGCAGTACAACAAACACCAGA 58.706 47.619 0.00 0.00 0.00 3.86
2209 2446 2.685897 GGCAGTACAACAAACACCAGAA 59.314 45.455 0.00 0.00 0.00 3.02
2210 2447 3.129638 GGCAGTACAACAAACACCAGAAA 59.870 43.478 0.00 0.00 0.00 2.52
2211 2448 4.202111 GGCAGTACAACAAACACCAGAAAT 60.202 41.667 0.00 0.00 0.00 2.17
2212 2449 5.009210 GGCAGTACAACAAACACCAGAAATA 59.991 40.000 0.00 0.00 0.00 1.40
2213 2450 6.460399 GGCAGTACAACAAACACCAGAAATAA 60.460 38.462 0.00 0.00 0.00 1.40
2214 2451 6.416750 GCAGTACAACAAACACCAGAAATAAC 59.583 38.462 0.00 0.00 0.00 1.89
2215 2452 7.476667 CAGTACAACAAACACCAGAAATAACA 58.523 34.615 0.00 0.00 0.00 2.41
2216 2453 7.971168 CAGTACAACAAACACCAGAAATAACAA 59.029 33.333 0.00 0.00 0.00 2.83
2217 2454 8.524487 AGTACAACAAACACCAGAAATAACAAA 58.476 29.630 0.00 0.00 0.00 2.83
2218 2455 9.141400 GTACAACAAACACCAGAAATAACAAAA 57.859 29.630 0.00 0.00 0.00 2.44
2219 2456 8.608844 ACAACAAACACCAGAAATAACAAAAA 57.391 26.923 0.00 0.00 0.00 1.94
2220 2457 9.225436 ACAACAAACACCAGAAATAACAAAAAT 57.775 25.926 0.00 0.00 0.00 1.82
2235 2472 8.980481 ATAACAAAAATTAGATCCAGATCCGT 57.020 30.769 4.01 0.00 38.58 4.69
2237 2474 8.438676 AACAAAAATTAGATCCAGATCCGTAG 57.561 34.615 4.01 0.00 38.58 3.51
2238 2475 7.792032 ACAAAAATTAGATCCAGATCCGTAGA 58.208 34.615 4.01 0.00 38.58 2.59
2239 2476 7.711339 ACAAAAATTAGATCCAGATCCGTAGAC 59.289 37.037 4.01 0.00 38.58 2.59
2240 2477 5.986501 AATTAGATCCAGATCCGTAGACC 57.013 43.478 4.01 0.00 38.58 3.85
2241 2478 4.448720 TTAGATCCAGATCCGTAGACCA 57.551 45.455 4.01 0.00 38.58 4.02
2242 2479 2.588620 AGATCCAGATCCGTAGACCAC 58.411 52.381 4.01 0.00 38.58 4.16
2243 2480 1.614413 GATCCAGATCCGTAGACCACC 59.386 57.143 0.00 0.00 31.76 4.61
2244 2481 0.629596 TCCAGATCCGTAGACCACCT 59.370 55.000 0.00 0.00 0.00 4.00
2245 2482 1.848388 TCCAGATCCGTAGACCACCTA 59.152 52.381 0.00 0.00 0.00 3.08
2246 2483 2.158652 TCCAGATCCGTAGACCACCTAG 60.159 54.545 0.00 0.00 0.00 3.02
2247 2484 1.609555 CAGATCCGTAGACCACCTAGC 59.390 57.143 0.00 0.00 0.00 3.42
2248 2485 0.592148 GATCCGTAGACCACCTAGCG 59.408 60.000 0.00 0.00 0.00 4.26
2249 2486 0.182061 ATCCGTAGACCACCTAGCGA 59.818 55.000 0.00 0.00 0.00 4.93
2250 2487 0.745845 TCCGTAGACCACCTAGCGAC 60.746 60.000 0.00 0.00 0.00 5.19
2251 2488 1.351012 CGTAGACCACCTAGCGACG 59.649 63.158 0.00 0.00 0.00 5.12
2252 2489 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
2253 2490 0.376502 GTAGACCACCTAGCGACGAC 59.623 60.000 0.00 0.00 0.00 4.34
2254 2491 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
2255 2492 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
2256 2493 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
2257 2494 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
2258 2495 0.377554 CCACCTAGCGACGACTACAG 59.622 60.000 0.00 0.00 0.00 2.74
2259 2496 0.377554 CACCTAGCGACGACTACAGG 59.622 60.000 0.00 3.03 0.00 4.00
2260 2497 1.355916 CCTAGCGACGACTACAGGC 59.644 63.158 0.00 0.00 0.00 4.85
2261 2498 1.374343 CCTAGCGACGACTACAGGCA 61.374 60.000 0.00 0.00 0.00 4.75
2262 2499 0.248134 CTAGCGACGACTACAGGCAC 60.248 60.000 0.00 0.00 0.00 5.01
2263 2500 0.675837 TAGCGACGACTACAGGCACT 60.676 55.000 0.00 0.00 43.88 4.40
2274 2511 2.047465 AGGCACTGAAGCGAGCAG 60.047 61.111 0.00 0.00 37.18 4.24
2275 2512 2.047844 GGCACTGAAGCGAGCAGA 60.048 61.111 9.89 0.00 36.86 4.26
2276 2513 1.669115 GGCACTGAAGCGAGCAGAA 60.669 57.895 9.89 0.00 36.86 3.02
2277 2514 1.633852 GGCACTGAAGCGAGCAGAAG 61.634 60.000 9.89 4.26 36.86 2.85
2278 2515 1.633852 GCACTGAAGCGAGCAGAAGG 61.634 60.000 9.89 2.01 36.86 3.46
2279 2516 1.375268 ACTGAAGCGAGCAGAAGGC 60.375 57.895 9.89 0.00 45.30 4.35
2299 2536 4.740822 GCCACCGTCATTGCCCCT 62.741 66.667 0.00 0.00 0.00 4.79
2300 2537 2.438434 CCACCGTCATTGCCCCTC 60.438 66.667 0.00 0.00 0.00 4.30
2301 2538 2.438434 CACCGTCATTGCCCCTCC 60.438 66.667 0.00 0.00 0.00 4.30
2302 2539 3.728373 ACCGTCATTGCCCCTCCC 61.728 66.667 0.00 0.00 0.00 4.30
2303 2540 3.411517 CCGTCATTGCCCCTCCCT 61.412 66.667 0.00 0.00 0.00 4.20
2304 2541 2.190578 CGTCATTGCCCCTCCCTC 59.809 66.667 0.00 0.00 0.00 4.30
2305 2542 2.190578 GTCATTGCCCCTCCCTCG 59.809 66.667 0.00 0.00 0.00 4.63
2306 2543 3.797353 TCATTGCCCCTCCCTCGC 61.797 66.667 0.00 0.00 0.00 5.03
2307 2544 4.883354 CATTGCCCCTCCCTCGCC 62.883 72.222 0.00 0.00 0.00 5.54
2324 2561 4.074647 CGGAGCCGGGAAAAACTT 57.925 55.556 2.18 0.00 35.56 2.66
2325 2562 2.337361 CGGAGCCGGGAAAAACTTT 58.663 52.632 2.18 0.00 35.56 2.66
2326 2563 0.671796 CGGAGCCGGGAAAAACTTTT 59.328 50.000 2.18 0.00 35.56 2.27
2327 2564 1.881324 CGGAGCCGGGAAAAACTTTTA 59.119 47.619 2.18 0.00 35.56 1.52
2328 2565 2.490509 CGGAGCCGGGAAAAACTTTTAT 59.509 45.455 2.18 0.00 35.56 1.40
2329 2566 3.690628 CGGAGCCGGGAAAAACTTTTATA 59.309 43.478 2.18 0.00 35.56 0.98
2330 2567 4.201881 CGGAGCCGGGAAAAACTTTTATAG 60.202 45.833 2.18 0.00 35.56 1.31
2331 2568 4.703575 GGAGCCGGGAAAAACTTTTATAGT 59.296 41.667 2.18 0.00 39.32 2.12
2332 2569 5.882000 GGAGCCGGGAAAAACTTTTATAGTA 59.118 40.000 2.18 0.00 35.54 1.82
2333 2570 6.037940 GGAGCCGGGAAAAACTTTTATAGTAG 59.962 42.308 2.18 0.00 35.54 2.57
2334 2571 6.714278 AGCCGGGAAAAACTTTTATAGTAGA 58.286 36.000 2.18 0.00 35.54 2.59
2335 2572 7.344134 AGCCGGGAAAAACTTTTATAGTAGAT 58.656 34.615 2.18 0.00 35.54 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.896744 CAAGCCAGAAATATGAAGTCTTCAATA 58.103 33.333 18.93 11.87 43.95 1.90
4 5 6.240894 ACAAGCCAGAAATATGAAGTCTTCA 58.759 36.000 17.46 17.46 45.01 3.02
5 6 6.456181 CGACAAGCCAGAAATATGAAGTCTTC 60.456 42.308 5.58 5.58 0.00 2.87
6 7 5.352569 CGACAAGCCAGAAATATGAAGTCTT 59.647 40.000 0.00 0.00 0.00 3.01
7 8 4.872691 CGACAAGCCAGAAATATGAAGTCT 59.127 41.667 0.00 0.00 0.00 3.24
8 9 4.034510 CCGACAAGCCAGAAATATGAAGTC 59.965 45.833 0.00 0.00 0.00 3.01
9 10 3.941483 CCGACAAGCCAGAAATATGAAGT 59.059 43.478 0.00 0.00 0.00 3.01
10 11 3.313526 CCCGACAAGCCAGAAATATGAAG 59.686 47.826 0.00 0.00 0.00 3.02
11 12 3.278574 CCCGACAAGCCAGAAATATGAA 58.721 45.455 0.00 0.00 0.00 2.57
12 13 2.917933 CCCGACAAGCCAGAAATATGA 58.082 47.619 0.00 0.00 0.00 2.15
13 14 1.334869 GCCCGACAAGCCAGAAATATG 59.665 52.381 0.00 0.00 0.00 1.78
14 15 1.064758 TGCCCGACAAGCCAGAAATAT 60.065 47.619 0.00 0.00 0.00 1.28
15 16 0.326595 TGCCCGACAAGCCAGAAATA 59.673 50.000 0.00 0.00 0.00 1.40
16 17 0.539438 TTGCCCGACAAGCCAGAAAT 60.539 50.000 0.00 0.00 33.24 2.17
17 18 1.152860 TTGCCCGACAAGCCAGAAA 60.153 52.632 0.00 0.00 33.24 2.52
18 19 2.513395 TTGCCCGACAAGCCAGAA 59.487 55.556 0.00 0.00 33.24 3.02
25 26 3.410631 TGAATAACTCTTGCCCGACAA 57.589 42.857 0.00 0.00 36.62 3.18
26 27 3.627395 ATGAATAACTCTTGCCCGACA 57.373 42.857 0.00 0.00 0.00 4.35
27 28 7.907214 ATATAATGAATAACTCTTGCCCGAC 57.093 36.000 0.00 0.00 0.00 4.79
28 29 8.918202 AAATATAATGAATAACTCTTGCCCGA 57.082 30.769 0.00 0.00 0.00 5.14
29 30 9.965824 AAAAATATAATGAATAACTCTTGCCCG 57.034 29.630 0.00 0.00 0.00 6.13
52 53 6.582677 ACCGATCCATATGTTGAACAAAAA 57.417 33.333 0.62 0.00 0.00 1.94
53 54 6.582677 AACCGATCCATATGTTGAACAAAA 57.417 33.333 0.62 0.00 0.00 2.44
54 55 6.582677 AAACCGATCCATATGTTGAACAAA 57.417 33.333 0.62 0.00 0.00 2.83
55 56 6.582677 AAAACCGATCCATATGTTGAACAA 57.417 33.333 0.62 0.00 0.00 2.83
56 57 6.582677 AAAAACCGATCCATATGTTGAACA 57.417 33.333 0.00 0.00 0.00 3.18
78 79 6.827586 AGGGCATTATGTACGAAAGAAAAA 57.172 33.333 0.00 0.00 0.00 1.94
79 80 7.925043 TTAGGGCATTATGTACGAAAGAAAA 57.075 32.000 0.00 0.00 0.00 2.29
80 81 7.925043 TTTAGGGCATTATGTACGAAAGAAA 57.075 32.000 0.00 0.00 0.00 2.52
81 82 7.925043 TTTTAGGGCATTATGTACGAAAGAA 57.075 32.000 0.00 0.00 0.00 2.52
82 83 8.514330 AATTTTAGGGCATTATGTACGAAAGA 57.486 30.769 0.00 0.00 0.00 2.52
85 86 8.293867 GCATAATTTTAGGGCATTATGTACGAA 58.706 33.333 13.05 0.00 42.07 3.85
86 87 7.445707 TGCATAATTTTAGGGCATTATGTACGA 59.554 33.333 13.05 0.00 42.07 3.43
87 88 7.589395 TGCATAATTTTAGGGCATTATGTACG 58.411 34.615 13.05 0.00 42.07 3.67
88 89 9.573133 GATGCATAATTTTAGGGCATTATGTAC 57.427 33.333 0.00 0.00 44.52 2.90
89 90 9.532494 AGATGCATAATTTTAGGGCATTATGTA 57.468 29.630 0.00 10.33 44.52 2.29
90 91 8.426569 AGATGCATAATTTTAGGGCATTATGT 57.573 30.769 0.00 0.00 44.52 2.29
123 124 9.248291 ACATTTAGATGTGTTTTAGCAAAACTG 57.752 29.630 18.68 11.31 44.64 3.16
124 125 9.816354 AACATTTAGATGTGTTTTAGCAAAACT 57.184 25.926 18.68 5.69 45.58 2.66
127 128 9.255304 GGAAACATTTAGATGTGTTTTAGCAAA 57.745 29.630 0.00 0.00 45.58 3.68
128 129 8.637986 AGGAAACATTTAGATGTGTTTTAGCAA 58.362 29.630 0.00 0.00 45.58 3.91
129 130 8.177119 AGGAAACATTTAGATGTGTTTTAGCA 57.823 30.769 0.00 0.00 45.58 3.49
162 163 9.896645 AATCAATGACATAAGACTTAGATGTGT 57.103 29.630 8.08 4.02 33.99 3.72
168 169 9.713740 GCTTCAAATCAATGACATAAGACTTAG 57.286 33.333 0.73 0.00 0.00 2.18
169 170 9.230122 TGCTTCAAATCAATGACATAAGACTTA 57.770 29.630 0.00 0.00 0.00 2.24
170 171 8.114331 TGCTTCAAATCAATGACATAAGACTT 57.886 30.769 0.00 0.00 0.00 3.01
171 172 7.692460 TGCTTCAAATCAATGACATAAGACT 57.308 32.000 0.00 0.00 0.00 3.24
172 173 8.746922 TTTGCTTCAAATCAATGACATAAGAC 57.253 30.769 0.00 0.00 0.00 3.01
173 174 8.795513 TCTTTGCTTCAAATCAATGACATAAGA 58.204 29.630 0.00 0.00 32.70 2.10
174 175 8.975410 TCTTTGCTTCAAATCAATGACATAAG 57.025 30.769 0.00 0.00 32.70 1.73
175 176 9.932207 AATCTTTGCTTCAAATCAATGACATAA 57.068 25.926 0.00 0.00 32.70 1.90
176 177 9.577110 GAATCTTTGCTTCAAATCAATGACATA 57.423 29.630 0.00 0.00 32.70 2.29
177 178 7.274904 CGAATCTTTGCTTCAAATCAATGACAT 59.725 33.333 0.00 0.00 32.70 3.06
178 179 6.583427 CGAATCTTTGCTTCAAATCAATGACA 59.417 34.615 0.00 0.00 32.70 3.58
179 180 6.583806 ACGAATCTTTGCTTCAAATCAATGAC 59.416 34.615 0.00 0.00 32.70 3.06
180 181 6.583427 CACGAATCTTTGCTTCAAATCAATGA 59.417 34.615 0.00 0.00 32.70 2.57
181 182 6.364165 ACACGAATCTTTGCTTCAAATCAATG 59.636 34.615 0.00 0.00 32.70 2.82
182 183 6.364165 CACACGAATCTTTGCTTCAAATCAAT 59.636 34.615 0.00 0.00 32.70 2.57
183 184 5.686841 CACACGAATCTTTGCTTCAAATCAA 59.313 36.000 0.00 0.00 32.70 2.57
184 185 5.214417 CACACGAATCTTTGCTTCAAATCA 58.786 37.500 0.00 0.00 32.70 2.57
185 186 4.618489 CCACACGAATCTTTGCTTCAAATC 59.382 41.667 0.00 0.00 32.70 2.17
186 187 4.549458 CCACACGAATCTTTGCTTCAAAT 58.451 39.130 0.00 0.00 32.70 2.32
187 188 3.243367 CCCACACGAATCTTTGCTTCAAA 60.243 43.478 0.00 0.00 0.00 2.69
188 189 2.293122 CCCACACGAATCTTTGCTTCAA 59.707 45.455 0.00 0.00 0.00 2.69
189 190 1.879380 CCCACACGAATCTTTGCTTCA 59.121 47.619 0.00 0.00 0.00 3.02
190 191 1.401539 GCCCACACGAATCTTTGCTTC 60.402 52.381 0.00 0.00 0.00 3.86
191 192 0.598065 GCCCACACGAATCTTTGCTT 59.402 50.000 0.00 0.00 0.00 3.91
192 193 0.537143 TGCCCACACGAATCTTTGCT 60.537 50.000 0.00 0.00 0.00 3.91
193 194 0.527565 ATGCCCACACGAATCTTTGC 59.472 50.000 0.00 0.00 0.00 3.68
194 195 3.057315 AGAAATGCCCACACGAATCTTTG 60.057 43.478 0.00 0.00 0.00 2.77
195 196 3.157087 AGAAATGCCCACACGAATCTTT 58.843 40.909 0.00 0.00 0.00 2.52
196 197 2.795329 AGAAATGCCCACACGAATCTT 58.205 42.857 0.00 0.00 0.00 2.40
197 198 2.496899 AGAAATGCCCACACGAATCT 57.503 45.000 0.00 0.00 0.00 2.40
198 199 3.575965 AAAGAAATGCCCACACGAATC 57.424 42.857 0.00 0.00 0.00 2.52
199 200 3.069443 ACAAAAGAAATGCCCACACGAAT 59.931 39.130 0.00 0.00 0.00 3.34
200 201 2.428890 ACAAAAGAAATGCCCACACGAA 59.571 40.909 0.00 0.00 0.00 3.85
201 202 2.028130 ACAAAAGAAATGCCCACACGA 58.972 42.857 0.00 0.00 0.00 4.35
202 203 2.034558 AGACAAAAGAAATGCCCACACG 59.965 45.455 0.00 0.00 0.00 4.49
203 204 3.733443 AGACAAAAGAAATGCCCACAC 57.267 42.857 0.00 0.00 0.00 3.82
204 205 4.751767 AAAGACAAAAGAAATGCCCACA 57.248 36.364 0.00 0.00 0.00 4.17
205 206 5.817296 AGAAAAAGACAAAAGAAATGCCCAC 59.183 36.000 0.00 0.00 0.00 4.61
206 207 5.988287 AGAAAAAGACAAAAGAAATGCCCA 58.012 33.333 0.00 0.00 0.00 5.36
207 208 6.925610 AAGAAAAAGACAAAAGAAATGCCC 57.074 33.333 0.00 0.00 0.00 5.36
214 215 9.150348 CCAAGCTAAAAAGAAAAAGACAAAAGA 57.850 29.630 0.00 0.00 0.00 2.52
215 216 8.935844 ACCAAGCTAAAAAGAAAAAGACAAAAG 58.064 29.630 0.00 0.00 0.00 2.27
216 217 8.840833 ACCAAGCTAAAAAGAAAAAGACAAAA 57.159 26.923 0.00 0.00 0.00 2.44
217 218 8.840833 AACCAAGCTAAAAAGAAAAAGACAAA 57.159 26.923 0.00 0.00 0.00 2.83
218 219 9.930693 TTAACCAAGCTAAAAAGAAAAAGACAA 57.069 25.926 0.00 0.00 0.00 3.18
219 220 9.581099 CTTAACCAAGCTAAAAAGAAAAAGACA 57.419 29.630 0.00 0.00 0.00 3.41
220 221 9.582431 ACTTAACCAAGCTAAAAAGAAAAAGAC 57.418 29.630 0.00 0.00 34.94 3.01
221 222 9.797556 GACTTAACCAAGCTAAAAAGAAAAAGA 57.202 29.630 0.00 0.00 34.94 2.52
222 223 9.581099 TGACTTAACCAAGCTAAAAAGAAAAAG 57.419 29.630 0.00 0.00 34.94 2.27
231 232 9.515226 ACATCTAAATGACTTAACCAAGCTAAA 57.485 29.630 0.00 0.00 36.67 1.85
233 234 9.595823 GTACATCTAAATGACTTAACCAAGCTA 57.404 33.333 0.00 0.00 36.67 3.32
234 235 8.100791 TGTACATCTAAATGACTTAACCAAGCT 58.899 33.333 0.00 0.00 36.67 3.74
235 236 8.263940 TGTACATCTAAATGACTTAACCAAGC 57.736 34.615 0.00 0.00 36.67 4.01
254 255 9.698309 GCTAGATGTGTCATAGTTATTGTACAT 57.302 33.333 0.00 0.00 0.00 2.29
255 256 8.914011 AGCTAGATGTGTCATAGTTATTGTACA 58.086 33.333 0.00 0.00 0.00 2.90
258 259 9.973450 CTTAGCTAGATGTGTCATAGTTATTGT 57.027 33.333 0.00 0.00 0.00 2.71
259 260 8.920665 GCTTAGCTAGATGTGTCATAGTTATTG 58.079 37.037 0.00 0.00 0.00 1.90
260 261 8.865090 AGCTTAGCTAGATGTGTCATAGTTATT 58.135 33.333 4.30 0.00 36.99 1.40
261 262 8.415950 AGCTTAGCTAGATGTGTCATAGTTAT 57.584 34.615 4.30 0.00 36.99 1.89
262 263 7.825331 AGCTTAGCTAGATGTGTCATAGTTA 57.175 36.000 4.30 0.00 36.99 2.24
263 264 6.723298 AGCTTAGCTAGATGTGTCATAGTT 57.277 37.500 4.30 0.00 36.99 2.24
264 265 6.723298 AAGCTTAGCTAGATGTGTCATAGT 57.277 37.500 7.32 0.00 38.25 2.12
265 266 9.703892 AATAAAGCTTAGCTAGATGTGTCATAG 57.296 33.333 7.32 0.00 38.25 2.23
267 268 8.834465 CAAATAAAGCTTAGCTAGATGTGTCAT 58.166 33.333 7.32 0.00 38.25 3.06
268 269 7.280876 CCAAATAAAGCTTAGCTAGATGTGTCA 59.719 37.037 7.32 0.00 38.25 3.58
269 270 7.281100 ACCAAATAAAGCTTAGCTAGATGTGTC 59.719 37.037 7.32 0.00 38.25 3.67
270 271 7.066284 CACCAAATAAAGCTTAGCTAGATGTGT 59.934 37.037 7.32 0.00 38.25 3.72
271 272 7.412853 CACCAAATAAAGCTTAGCTAGATGTG 58.587 38.462 7.32 9.09 38.25 3.21
272 273 6.038714 GCACCAAATAAAGCTTAGCTAGATGT 59.961 38.462 7.32 0.00 38.25 3.06
273 274 6.433766 GCACCAAATAAAGCTTAGCTAGATG 58.566 40.000 7.32 3.01 38.25 2.90
274 275 5.237344 CGCACCAAATAAAGCTTAGCTAGAT 59.763 40.000 7.32 0.63 38.25 1.98
275 276 4.570772 CGCACCAAATAAAGCTTAGCTAGA 59.429 41.667 7.32 0.00 38.25 2.43
276 277 4.332819 ACGCACCAAATAAAGCTTAGCTAG 59.667 41.667 7.32 0.00 38.25 3.42
277 278 4.258543 ACGCACCAAATAAAGCTTAGCTA 58.741 39.130 7.32 0.00 38.25 3.32
278 279 3.081804 ACGCACCAAATAAAGCTTAGCT 58.918 40.909 0.00 0.00 42.56 3.32
279 280 3.487563 ACGCACCAAATAAAGCTTAGC 57.512 42.857 0.00 0.00 0.00 3.09
280 281 7.968405 AGAATAAACGCACCAAATAAAGCTTAG 59.032 33.333 0.00 0.00 0.00 2.18
281 282 7.822658 AGAATAAACGCACCAAATAAAGCTTA 58.177 30.769 0.00 0.00 0.00 3.09
282 283 6.687604 AGAATAAACGCACCAAATAAAGCTT 58.312 32.000 0.00 0.00 0.00 3.74
283 284 6.267496 AGAATAAACGCACCAAATAAAGCT 57.733 33.333 0.00 0.00 0.00 3.74
284 285 6.944557 AAGAATAAACGCACCAAATAAAGC 57.055 33.333 0.00 0.00 0.00 3.51
290 291 9.915629 ACAAATATAAAGAATAAACGCACCAAA 57.084 25.926 0.00 0.00 0.00 3.28
291 292 9.915629 AACAAATATAAAGAATAAACGCACCAA 57.084 25.926 0.00 0.00 0.00 3.67
333 334 9.284594 CGTTTCTTTTCTTTCACATGTCTTTTA 57.715 29.630 0.00 0.00 0.00 1.52
334 335 8.026607 TCGTTTCTTTTCTTTCACATGTCTTTT 58.973 29.630 0.00 0.00 0.00 2.27
335 336 7.535139 TCGTTTCTTTTCTTTCACATGTCTTT 58.465 30.769 0.00 0.00 0.00 2.52
336 337 7.083875 TCGTTTCTTTTCTTTCACATGTCTT 57.916 32.000 0.00 0.00 0.00 3.01
337 338 6.238484 CCTCGTTTCTTTTCTTTCACATGTCT 60.238 38.462 0.00 0.00 0.00 3.41
338 339 5.909610 CCTCGTTTCTTTTCTTTCACATGTC 59.090 40.000 0.00 0.00 0.00 3.06
339 340 5.588648 TCCTCGTTTCTTTTCTTTCACATGT 59.411 36.000 0.00 0.00 0.00 3.21
340 341 6.060028 TCCTCGTTTCTTTTCTTTCACATG 57.940 37.500 0.00 0.00 0.00 3.21
341 342 6.884280 ATCCTCGTTTCTTTTCTTTCACAT 57.116 33.333 0.00 0.00 0.00 3.21
342 343 6.693315 AATCCTCGTTTCTTTTCTTTCACA 57.307 33.333 0.00 0.00 0.00 3.58
343 344 7.590322 GGTTAATCCTCGTTTCTTTTCTTTCAC 59.410 37.037 0.00 0.00 0.00 3.18
344 345 7.255346 GGGTTAATCCTCGTTTCTTTTCTTTCA 60.255 37.037 0.00 0.00 36.25 2.69
345 346 7.082602 GGGTTAATCCTCGTTTCTTTTCTTTC 58.917 38.462 0.00 0.00 36.25 2.62
348 349 5.627135 TGGGTTAATCCTCGTTTCTTTTCT 58.373 37.500 6.28 0.00 36.25 2.52
349 350 5.952526 TGGGTTAATCCTCGTTTCTTTTC 57.047 39.130 6.28 0.00 36.25 2.29
354 355 8.672823 AGTATAAATGGGTTAATCCTCGTTTC 57.327 34.615 6.28 0.00 36.25 2.78
355 356 8.899771 CAAGTATAAATGGGTTAATCCTCGTTT 58.100 33.333 6.28 7.33 36.25 3.60
358 359 6.710744 AGCAAGTATAAATGGGTTAATCCTCG 59.289 38.462 6.28 0.00 36.25 4.63
359 360 7.175119 GGAGCAAGTATAAATGGGTTAATCCTC 59.825 40.741 6.28 0.00 36.25 3.71
365 366 6.068010 CCATGGAGCAAGTATAAATGGGTTA 58.932 40.000 5.56 0.00 31.43 2.85
406 408 7.549134 ACCACCTCAAAACATTTTCTTTCTTTC 59.451 33.333 0.00 0.00 0.00 2.62
407 409 7.394016 ACCACCTCAAAACATTTTCTTTCTTT 58.606 30.769 0.00 0.00 0.00 2.52
410 412 8.764287 CATAACCACCTCAAAACATTTTCTTTC 58.236 33.333 0.00 0.00 0.00 2.62
413 415 6.041979 AGCATAACCACCTCAAAACATTTTCT 59.958 34.615 0.00 0.00 0.00 2.52
414 416 6.223120 AGCATAACCACCTCAAAACATTTTC 58.777 36.000 0.00 0.00 0.00 2.29
415 417 6.173427 AGCATAACCACCTCAAAACATTTT 57.827 33.333 0.00 0.00 0.00 1.82
416 418 5.806654 AGCATAACCACCTCAAAACATTT 57.193 34.783 0.00 0.00 0.00 2.32
417 419 5.806654 AAGCATAACCACCTCAAAACATT 57.193 34.783 0.00 0.00 0.00 2.71
418 420 5.418840 CCTAAGCATAACCACCTCAAAACAT 59.581 40.000 0.00 0.00 0.00 2.71
419 421 4.764823 CCTAAGCATAACCACCTCAAAACA 59.235 41.667 0.00 0.00 0.00 2.83
420 422 4.765339 ACCTAAGCATAACCACCTCAAAAC 59.235 41.667 0.00 0.00 0.00 2.43
430 432 8.242729 TCCTAGTACTAAACCTAAGCATAACC 57.757 38.462 3.76 0.00 0.00 2.85
440 442 2.941720 CGCGTCTCCTAGTACTAAACCT 59.058 50.000 3.76 0.00 0.00 3.50
443 445 2.939103 GACCGCGTCTCCTAGTACTAAA 59.061 50.000 4.92 0.00 0.00 1.85
462 464 2.679450 TGTACAGCACCAACATACGAC 58.321 47.619 0.00 0.00 0.00 4.34
463 465 3.603158 ATGTACAGCACCAACATACGA 57.397 42.857 0.33 0.00 32.21 3.43
464 466 3.181511 CCAATGTACAGCACCAACATACG 60.182 47.826 0.33 0.00 33.59 3.06
465 467 3.756434 ACCAATGTACAGCACCAACATAC 59.244 43.478 0.33 0.00 33.59 2.39
478 480 2.504367 ACAAGGAGCACACCAATGTAC 58.496 47.619 0.00 0.00 36.72 2.90
493 495 4.509970 TCGTGTACATGAGTCAAAACAAGG 59.490 41.667 13.87 8.04 0.00 3.61
541 543 5.390885 CCTTGACATAAAGTTGACACCGATG 60.391 44.000 0.00 0.00 0.00 3.84
646 682 6.839124 ATGTAGGAATCAAGAAATGCACAA 57.161 33.333 0.00 0.00 0.00 3.33
760 803 2.514458 ACCCTGGATAAAGCAAGTGG 57.486 50.000 0.00 0.00 0.00 4.00
856 899 1.478137 GTTGCTACTCGCCACTATCG 58.522 55.000 0.00 0.00 38.05 2.92
866 909 1.574702 GGGTGGTTGCGTTGCTACTC 61.575 60.000 3.62 0.00 34.94 2.59
873 916 2.203294 GGTGAGGGTGGTTGCGTT 60.203 61.111 0.00 0.00 0.00 4.84
874 917 3.050354 TTGGTGAGGGTGGTTGCGT 62.050 57.895 0.00 0.00 0.00 5.24
875 918 2.203280 TTGGTGAGGGTGGTTGCG 60.203 61.111 0.00 0.00 0.00 4.85
995 1046 1.289231 AGAGGAGGTAGCTCATGGTGA 59.711 52.381 22.66 0.00 0.00 4.02
997 1048 1.412361 GGAGAGGAGGTAGCTCATGGT 60.412 57.143 22.66 6.04 0.00 3.55
1329 1396 4.639135 TCATCGTTGATCGTCTCAGAAT 57.361 40.909 0.00 0.00 40.80 2.40
1355 1426 0.457035 CGTGGCCATCAATCAAAGGG 59.543 55.000 9.72 0.00 0.00 3.95
1357 1428 0.527113 TGCGTGGCCATCAATCAAAG 59.473 50.000 9.72 0.00 0.00 2.77
1361 1432 1.361271 CCATGCGTGGCCATCAATC 59.639 57.895 13.11 0.00 39.01 2.67
1362 1433 3.528853 CCATGCGTGGCCATCAAT 58.471 55.556 13.11 0.00 39.01 2.57
1379 1484 0.962356 ACAACCCTAGCTGCATGTGC 60.962 55.000 1.02 0.00 42.50 4.57
1386 1491 2.108168 TGCTACCTACAACCCTAGCTG 58.892 52.381 0.00 0.00 34.00 4.24
1409 1514 2.538449 GACGATCCATATGCGAAAACGT 59.462 45.455 8.01 12.91 0.00 3.99
1410 1515 2.408487 CGACGATCCATATGCGAAAACG 60.408 50.000 8.01 10.65 0.00 3.60
1411 1516 2.096909 CCGACGATCCATATGCGAAAAC 60.097 50.000 8.01 0.00 0.00 2.43
1412 1517 2.131972 CCGACGATCCATATGCGAAAA 58.868 47.619 8.01 0.00 0.00 2.29
1413 1518 1.778334 CCGACGATCCATATGCGAAA 58.222 50.000 8.01 0.00 0.00 3.46
1414 1519 0.666274 GCCGACGATCCATATGCGAA 60.666 55.000 8.01 0.00 0.00 4.70
1415 1520 1.080772 GCCGACGATCCATATGCGA 60.081 57.895 8.01 2.82 0.00 5.10
1416 1521 2.436539 CGCCGACGATCCATATGCG 61.437 63.158 0.00 0.00 43.93 4.73
1417 1522 1.080772 TCGCCGACGATCCATATGC 60.081 57.895 0.00 0.00 45.12 3.14
1427 1532 4.514577 AGAGCCCATTCGCCGACG 62.515 66.667 0.00 0.00 42.01 5.12
1428 1533 1.706287 GAAAGAGCCCATTCGCCGAC 61.706 60.000 0.00 0.00 0.00 4.79
1429 1534 1.449601 GAAAGAGCCCATTCGCCGA 60.450 57.895 0.00 0.00 0.00 5.54
1430 1535 1.305219 TTGAAAGAGCCCATTCGCCG 61.305 55.000 0.00 0.00 0.00 6.46
1431 1536 0.453390 CTTGAAAGAGCCCATTCGCC 59.547 55.000 0.00 0.00 0.00 5.54
1432 1537 1.168714 ACTTGAAAGAGCCCATTCGC 58.831 50.000 0.00 0.00 0.00 4.70
1433 1538 3.923017 AAACTTGAAAGAGCCCATTCG 57.077 42.857 0.00 0.00 0.00 3.34
1434 1539 4.948847 ACAAAACTTGAAAGAGCCCATTC 58.051 39.130 0.00 0.00 0.00 2.67
1435 1540 6.670695 ATACAAAACTTGAAAGAGCCCATT 57.329 33.333 0.00 0.00 0.00 3.16
1436 1541 6.295292 GGAATACAAAACTTGAAAGAGCCCAT 60.295 38.462 0.00 0.00 0.00 4.00
1437 1542 5.010617 GGAATACAAAACTTGAAAGAGCCCA 59.989 40.000 0.00 0.00 0.00 5.36
1438 1543 5.010617 TGGAATACAAAACTTGAAAGAGCCC 59.989 40.000 0.00 0.00 0.00 5.19
1439 1544 6.084326 TGGAATACAAAACTTGAAAGAGCC 57.916 37.500 0.00 0.00 0.00 4.70
1440 1545 6.152379 CCTGGAATACAAAACTTGAAAGAGC 58.848 40.000 0.00 0.00 0.00 4.09
1441 1546 7.277174 ACCTGGAATACAAAACTTGAAAGAG 57.723 36.000 0.00 0.00 0.00 2.85
1446 1580 7.446013 ACGATAAACCTGGAATACAAAACTTGA 59.554 33.333 0.00 0.00 0.00 3.02
1461 1595 4.114058 TCGTAAAGGGACGATAAACCTG 57.886 45.455 0.00 0.00 46.43 4.00
1532 1666 5.169836 TCTATAGCACGCATATGTATCCG 57.830 43.478 4.29 1.74 0.00 4.18
1545 1679 7.327275 GCAGTGAGTAATACACATCTATAGCAC 59.673 40.741 0.00 0.00 40.25 4.40
1593 1749 7.485418 TTACAGCGAGAAAAATACTGTTTGA 57.515 32.000 0.00 0.00 41.56 2.69
1594 1750 7.149128 GCTTTACAGCGAGAAAAATACTGTTTG 60.149 37.037 0.00 0.00 41.56 2.93
1595 1751 6.856426 GCTTTACAGCGAGAAAAATACTGTTT 59.144 34.615 0.00 0.00 41.56 2.83
1597 1753 5.928153 GCTTTACAGCGAGAAAAATACTGT 58.072 37.500 0.00 0.00 43.60 3.55
1632 1804 8.519799 AGTTTCTGTTTCTTTATCTCCAAACA 57.480 30.769 0.00 0.00 36.60 2.83
1633 1805 9.803315 AAAGTTTCTGTTTCTTTATCTCCAAAC 57.197 29.630 0.00 0.00 30.98 2.93
1702 1875 2.038557 CCCAACCACCGCTAGCTAATAT 59.961 50.000 13.93 0.00 0.00 1.28
1745 1918 7.122799 TCTCTCATGACTTTCGGAAAGATTAGA 59.877 37.037 31.26 22.43 41.02 2.10
1805 2018 5.134202 AGTGTTAACATTTTTAGCCCTGC 57.866 39.130 12.26 0.00 0.00 4.85
1806 2019 5.476945 AGGAGTGTTAACATTTTTAGCCCTG 59.523 40.000 12.26 0.00 0.00 4.45
1807 2020 5.641155 AGGAGTGTTAACATTTTTAGCCCT 58.359 37.500 12.26 6.29 0.00 5.19
1818 2031 8.822805 AGTTCCAAGATAATAGGAGTGTTAACA 58.177 33.333 3.59 3.59 32.11 2.41
1826 2039 7.041508 GCACAATCAGTTCCAAGATAATAGGAG 60.042 40.741 0.00 0.00 32.11 3.69
1830 2043 6.112734 ACGCACAATCAGTTCCAAGATAATA 58.887 36.000 0.00 0.00 0.00 0.98
1840 2053 3.035942 GTCACAAACGCACAATCAGTTC 58.964 45.455 0.00 0.00 0.00 3.01
1853 2066 4.370364 TGCAAGGAAAGAAGTCACAAAC 57.630 40.909 0.00 0.00 0.00 2.93
1857 2070 7.706607 ACTTTATTTTGCAAGGAAAGAAGTCAC 59.293 33.333 24.79 0.00 32.62 3.67
1860 2073 9.448438 AAAACTTTATTTTGCAAGGAAAGAAGT 57.552 25.926 24.79 16.71 32.46 3.01
1878 2091 6.318648 ACAAGCAGTGATCTGTCAAAACTTTA 59.681 34.615 0.00 0.00 43.05 1.85
1883 2096 4.639755 TCAACAAGCAGTGATCTGTCAAAA 59.360 37.500 0.00 0.00 43.05 2.44
1892 2105 2.936919 TGAGGTCAACAAGCAGTGAT 57.063 45.000 0.00 0.00 0.00 3.06
1895 2108 3.209410 CTTCTTGAGGTCAACAAGCAGT 58.791 45.455 0.00 0.00 42.76 4.40
1897 2110 2.172505 TCCTTCTTGAGGTCAACAAGCA 59.827 45.455 0.00 0.00 46.39 3.91
1901 2114 3.711704 ACTCTTCCTTCTTGAGGTCAACA 59.288 43.478 0.00 0.00 46.39 3.33
1902 2115 4.344359 ACTCTTCCTTCTTGAGGTCAAC 57.656 45.455 0.00 0.00 46.39 3.18
1921 2134 3.504906 CAGACACTTGATGATGCCAAACT 59.495 43.478 0.00 0.00 0.00 2.66
1983 2196 6.701340 ACTTAGCAATCTCATGTGTCACTAA 58.299 36.000 4.27 0.00 0.00 2.24
1987 2200 7.161404 ACTAAACTTAGCAATCTCATGTGTCA 58.839 34.615 0.00 0.00 34.09 3.58
1991 2204 9.066892 TCAAAACTAAACTTAGCAATCTCATGT 57.933 29.630 0.00 0.00 34.09 3.21
2009 2246 9.268268 AGAACGTCTGATTTATTGTCAAAACTA 57.732 29.630 0.00 0.00 0.00 2.24
2011 2248 8.782533 AAGAACGTCTGATTTATTGTCAAAAC 57.217 30.769 0.00 0.00 0.00 2.43
2027 2264 8.068380 GCACAACTATTAAAAAGAAGAACGTCT 58.932 33.333 0.00 0.00 0.00 4.18
2032 2269 7.136119 CCACGCACAACTATTAAAAAGAAGAA 58.864 34.615 0.00 0.00 0.00 2.52
2038 2275 4.569761 TGCCACGCACAACTATTAAAAA 57.430 36.364 0.00 0.00 31.71 1.94
2053 2290 1.129251 CTCATAACAGCAAGTGCCACG 59.871 52.381 0.00 0.00 43.38 4.94
2119 2356 7.769044 ACTGTAACTCTGTGCTTTCTCTTAAAA 59.231 33.333 0.00 0.00 0.00 1.52
2120 2357 7.272978 ACTGTAACTCTGTGCTTTCTCTTAAA 58.727 34.615 0.00 0.00 0.00 1.52
2121 2358 6.817184 ACTGTAACTCTGTGCTTTCTCTTAA 58.183 36.000 0.00 0.00 0.00 1.85
2122 2359 6.406692 ACTGTAACTCTGTGCTTTCTCTTA 57.593 37.500 0.00 0.00 0.00 2.10
2123 2360 5.283457 ACTGTAACTCTGTGCTTTCTCTT 57.717 39.130 0.00 0.00 0.00 2.85
2124 2361 4.946478 ACTGTAACTCTGTGCTTTCTCT 57.054 40.909 0.00 0.00 0.00 3.10
2125 2362 5.993106 AAACTGTAACTCTGTGCTTTCTC 57.007 39.130 0.00 0.00 0.00 2.87
2126 2363 6.759497 AAAAACTGTAACTCTGTGCTTTCT 57.241 33.333 0.00 0.00 0.00 2.52
2150 2387 9.559732 TGAATAGATCAGAAGTTTTCTCACAAA 57.440 29.630 0.00 0.00 38.11 2.83
2151 2388 9.730705 ATGAATAGATCAGAAGTTTTCTCACAA 57.269 29.630 0.00 0.00 42.53 3.33
2152 2389 9.376075 GATGAATAGATCAGAAGTTTTCTCACA 57.624 33.333 0.00 0.00 42.53 3.58
2153 2390 9.598517 AGATGAATAGATCAGAAGTTTTCTCAC 57.401 33.333 0.00 0.00 42.53 3.51
2163 2400 9.503399 CCATGATTGAAGATGAATAGATCAGAA 57.497 33.333 0.00 0.00 42.53 3.02
2164 2401 7.606839 GCCATGATTGAAGATGAATAGATCAGA 59.393 37.037 0.00 0.00 42.53 3.27
2165 2402 7.390718 TGCCATGATTGAAGATGAATAGATCAG 59.609 37.037 0.00 0.00 42.53 2.90
2166 2403 7.228590 TGCCATGATTGAAGATGAATAGATCA 58.771 34.615 0.00 0.00 43.67 2.92
2167 2404 7.390996 ACTGCCATGATTGAAGATGAATAGATC 59.609 37.037 0.00 0.00 0.00 2.75
2168 2405 7.232188 ACTGCCATGATTGAAGATGAATAGAT 58.768 34.615 0.00 0.00 0.00 1.98
2169 2406 6.598503 ACTGCCATGATTGAAGATGAATAGA 58.401 36.000 0.00 0.00 0.00 1.98
2170 2407 6.879276 ACTGCCATGATTGAAGATGAATAG 57.121 37.500 0.00 0.00 0.00 1.73
2171 2408 7.281841 TGTACTGCCATGATTGAAGATGAATA 58.718 34.615 0.00 0.00 0.00 1.75
2172 2409 6.124340 TGTACTGCCATGATTGAAGATGAAT 58.876 36.000 0.00 0.00 0.00 2.57
2173 2410 5.499313 TGTACTGCCATGATTGAAGATGAA 58.501 37.500 0.00 0.00 0.00 2.57
2174 2411 5.101648 TGTACTGCCATGATTGAAGATGA 57.898 39.130 0.00 0.00 0.00 2.92
2175 2412 5.124297 TGTTGTACTGCCATGATTGAAGATG 59.876 40.000 0.00 0.00 0.00 2.90
2176 2413 5.255687 TGTTGTACTGCCATGATTGAAGAT 58.744 37.500 0.00 0.00 0.00 2.40
2177 2414 4.650734 TGTTGTACTGCCATGATTGAAGA 58.349 39.130 0.00 0.00 0.00 2.87
2178 2415 5.375417 TTGTTGTACTGCCATGATTGAAG 57.625 39.130 0.00 0.00 0.00 3.02
2179 2416 5.068329 TGTTTGTTGTACTGCCATGATTGAA 59.932 36.000 0.00 0.00 0.00 2.69
2180 2417 4.582240 TGTTTGTTGTACTGCCATGATTGA 59.418 37.500 0.00 0.00 0.00 2.57
2181 2418 4.681025 GTGTTTGTTGTACTGCCATGATTG 59.319 41.667 0.00 0.00 0.00 2.67
2182 2419 4.261994 GGTGTTTGTTGTACTGCCATGATT 60.262 41.667 0.00 0.00 0.00 2.57
2183 2420 3.255642 GGTGTTTGTTGTACTGCCATGAT 59.744 43.478 0.00 0.00 0.00 2.45
2184 2421 2.621055 GGTGTTTGTTGTACTGCCATGA 59.379 45.455 0.00 0.00 0.00 3.07
2185 2422 2.360483 TGGTGTTTGTTGTACTGCCATG 59.640 45.455 0.00 0.00 0.00 3.66
2186 2423 2.622942 CTGGTGTTTGTTGTACTGCCAT 59.377 45.455 0.00 0.00 0.00 4.40
2187 2424 2.020720 CTGGTGTTTGTTGTACTGCCA 58.979 47.619 0.00 0.00 0.00 4.92
2188 2425 2.294074 TCTGGTGTTTGTTGTACTGCC 58.706 47.619 0.00 0.00 0.00 4.85
2189 2426 4.364415 TTTCTGGTGTTTGTTGTACTGC 57.636 40.909 0.00 0.00 0.00 4.40
2190 2427 7.476667 TGTTATTTCTGGTGTTTGTTGTACTG 58.523 34.615 0.00 0.00 0.00 2.74
2191 2428 7.633193 TGTTATTTCTGGTGTTTGTTGTACT 57.367 32.000 0.00 0.00 0.00 2.73
2192 2429 8.690680 TTTGTTATTTCTGGTGTTTGTTGTAC 57.309 30.769 0.00 0.00 0.00 2.90
2193 2430 9.706691 TTTTTGTTATTTCTGGTGTTTGTTGTA 57.293 25.926 0.00 0.00 0.00 2.41
2194 2431 8.608844 TTTTTGTTATTTCTGGTGTTTGTTGT 57.391 26.923 0.00 0.00 0.00 3.32
2209 2446 9.408648 ACGGATCTGGATCTAATTTTTGTTATT 57.591 29.630 6.47 0.00 37.92 1.40
2210 2447 8.980481 ACGGATCTGGATCTAATTTTTGTTAT 57.020 30.769 6.47 0.00 37.92 1.89
2211 2448 9.542462 CTACGGATCTGGATCTAATTTTTGTTA 57.458 33.333 6.47 0.00 37.92 2.41
2212 2449 8.265055 TCTACGGATCTGGATCTAATTTTTGTT 58.735 33.333 6.47 0.00 37.92 2.83
2213 2450 7.711339 GTCTACGGATCTGGATCTAATTTTTGT 59.289 37.037 6.47 1.31 37.92 2.83
2214 2451 7.171678 GGTCTACGGATCTGGATCTAATTTTTG 59.828 40.741 6.47 0.00 37.92 2.44
2215 2452 7.147549 TGGTCTACGGATCTGGATCTAATTTTT 60.148 37.037 6.47 0.00 37.92 1.94
2216 2453 6.326583 TGGTCTACGGATCTGGATCTAATTTT 59.673 38.462 6.47 0.00 37.92 1.82
2217 2454 5.839063 TGGTCTACGGATCTGGATCTAATTT 59.161 40.000 6.47 0.00 37.92 1.82
2218 2455 5.244178 GTGGTCTACGGATCTGGATCTAATT 59.756 44.000 6.47 0.00 37.92 1.40
2219 2456 4.767928 GTGGTCTACGGATCTGGATCTAAT 59.232 45.833 6.47 0.47 37.92 1.73
2220 2457 4.142790 GTGGTCTACGGATCTGGATCTAA 58.857 47.826 6.47 0.00 37.92 2.10
2221 2458 3.498121 GGTGGTCTACGGATCTGGATCTA 60.498 52.174 6.47 0.00 37.92 1.98
2222 2459 2.588620 GTGGTCTACGGATCTGGATCT 58.411 52.381 6.47 0.00 37.92 2.75
2223 2460 1.614413 GGTGGTCTACGGATCTGGATC 59.386 57.143 6.47 2.24 37.11 3.36
2224 2461 1.218196 AGGTGGTCTACGGATCTGGAT 59.782 52.381 6.47 0.00 0.00 3.41
2225 2462 0.629596 AGGTGGTCTACGGATCTGGA 59.370 55.000 6.47 0.00 0.00 3.86
2226 2463 2.231529 CTAGGTGGTCTACGGATCTGG 58.768 57.143 6.47 0.00 0.00 3.86
2227 2464 1.609555 GCTAGGTGGTCTACGGATCTG 59.390 57.143 0.00 0.00 0.00 2.90
2228 2465 1.814634 CGCTAGGTGGTCTACGGATCT 60.815 57.143 0.00 0.00 0.00 2.75
2229 2466 0.592148 CGCTAGGTGGTCTACGGATC 59.408 60.000 0.00 0.00 0.00 3.36
2230 2467 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.000 0.00 0.00 0.00 4.18
2231 2468 0.745845 GTCGCTAGGTGGTCTACGGA 60.746 60.000 0.00 0.00 0.00 4.69
2232 2469 1.726265 GTCGCTAGGTGGTCTACGG 59.274 63.158 0.00 0.00 0.00 4.02
2233 2470 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
2234 2471 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.00 0.00 0.00 2.59
2235 2472 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
2236 2473 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
2237 2474 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
2238 2475 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
2239 2476 0.377554 CTGTAGTCGTCGCTAGGTGG 59.622 60.000 0.00 0.00 0.00 4.61
2240 2477 0.377554 CCTGTAGTCGTCGCTAGGTG 59.622 60.000 0.00 0.00 0.00 4.00
2241 2478 1.375098 GCCTGTAGTCGTCGCTAGGT 61.375 60.000 0.00 0.00 0.00 3.08
2242 2479 1.355916 GCCTGTAGTCGTCGCTAGG 59.644 63.158 0.00 0.00 0.00 3.02
2243 2480 0.248134 GTGCCTGTAGTCGTCGCTAG 60.248 60.000 0.00 0.00 0.00 3.42
2244 2481 0.675837 AGTGCCTGTAGTCGTCGCTA 60.676 55.000 0.00 0.00 0.00 4.26
2245 2482 1.972223 AGTGCCTGTAGTCGTCGCT 60.972 57.895 0.00 0.00 0.00 4.93
2246 2483 1.801913 CAGTGCCTGTAGTCGTCGC 60.802 63.158 0.00 0.00 0.00 5.19
2247 2484 0.240145 TTCAGTGCCTGTAGTCGTCG 59.760 55.000 2.68 0.00 32.61 5.12
2248 2485 1.983972 CTTCAGTGCCTGTAGTCGTC 58.016 55.000 2.68 0.00 32.61 4.20
2249 2486 0.038159 GCTTCAGTGCCTGTAGTCGT 60.038 55.000 9.42 0.00 32.65 4.34
2250 2487 1.073216 CGCTTCAGTGCCTGTAGTCG 61.073 60.000 9.42 9.32 32.65 4.18
2251 2488 0.243907 TCGCTTCAGTGCCTGTAGTC 59.756 55.000 9.42 3.59 32.65 2.59
2252 2489 0.244994 CTCGCTTCAGTGCCTGTAGT 59.755 55.000 9.42 0.00 32.65 2.73
2253 2490 1.080995 GCTCGCTTCAGTGCCTGTAG 61.081 60.000 5.01 5.01 33.10 2.74
2254 2491 1.079819 GCTCGCTTCAGTGCCTGTA 60.080 57.895 2.68 0.00 32.61 2.74
2255 2492 2.358003 GCTCGCTTCAGTGCCTGT 60.358 61.111 2.68 0.00 32.61 4.00
2256 2493 2.357881 TGCTCGCTTCAGTGCCTG 60.358 61.111 0.00 0.00 0.00 4.85
2257 2494 2.047465 CTGCTCGCTTCAGTGCCT 60.047 61.111 0.00 0.00 0.00 4.75
2258 2495 1.633852 CTTCTGCTCGCTTCAGTGCC 61.634 60.000 0.00 0.00 33.48 5.01
2259 2496 1.633852 CCTTCTGCTCGCTTCAGTGC 61.634 60.000 0.00 0.00 33.48 4.40
2260 2497 1.633852 GCCTTCTGCTCGCTTCAGTG 61.634 60.000 0.00 0.00 36.87 3.66
2261 2498 1.375268 GCCTTCTGCTCGCTTCAGT 60.375 57.895 0.00 0.00 36.87 3.41
2262 2499 2.451167 CGCCTTCTGCTCGCTTCAG 61.451 63.158 0.00 0.00 38.05 3.02
2263 2500 2.433145 CGCCTTCTGCTCGCTTCA 60.433 61.111 0.00 0.00 38.05 3.02
2264 2501 3.858989 GCGCCTTCTGCTCGCTTC 61.859 66.667 0.00 0.00 44.79 3.86
2282 2519 4.740822 AGGGGCAATGACGGTGGC 62.741 66.667 0.00 0.00 40.67 5.01
2283 2520 2.438434 GAGGGGCAATGACGGTGG 60.438 66.667 0.00 0.00 0.00 4.61
2284 2521 2.438434 GGAGGGGCAATGACGGTG 60.438 66.667 0.00 0.00 0.00 4.94
2285 2522 3.728373 GGGAGGGGCAATGACGGT 61.728 66.667 0.00 0.00 0.00 4.83
2286 2523 3.406595 GAGGGAGGGGCAATGACGG 62.407 68.421 0.00 0.00 0.00 4.79
2287 2524 2.190578 GAGGGAGGGGCAATGACG 59.809 66.667 0.00 0.00 0.00 4.35
2288 2525 2.190578 CGAGGGAGGGGCAATGAC 59.809 66.667 0.00 0.00 0.00 3.06
2289 2526 3.797353 GCGAGGGAGGGGCAATGA 61.797 66.667 0.00 0.00 0.00 2.57
2290 2527 4.883354 GGCGAGGGAGGGGCAATG 62.883 72.222 0.00 0.00 0.00 2.82
2307 2544 0.671796 AAAAGTTTTTCCCGGCTCCG 59.328 50.000 0.00 0.48 39.44 4.63
2308 2545 4.703575 ACTATAAAAGTTTTTCCCGGCTCC 59.296 41.667 6.10 0.00 33.35 4.70
2309 2546 5.892160 ACTATAAAAGTTTTTCCCGGCTC 57.108 39.130 6.10 0.00 33.35 4.70
2310 2547 6.714278 TCTACTATAAAAGTTTTTCCCGGCT 58.286 36.000 6.10 0.00 39.80 5.52
2311 2548 6.990341 TCTACTATAAAAGTTTTTCCCGGC 57.010 37.500 6.10 0.00 39.80 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.