Multiple sequence alignment - TraesCS2D01G062300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G062300 chr2D 100.000 2408 0 0 1 2408 26456456 26458863 0.000000e+00 4447.0
1 TraesCS2D01G062300 chr2D 85.012 407 27 18 1549 1923 26422364 26422768 1.350000e-102 383.0
2 TraesCS2D01G062300 chr2D 86.349 315 35 5 95 406 26346503 26346812 1.070000e-88 337.0
3 TraesCS2D01G062300 chr2D 86.207 232 23 3 1941 2164 26439509 26439739 2.390000e-60 243.0
4 TraesCS2D01G062300 chr2D 76.106 226 34 15 90 313 26471218 26471425 1.520000e-17 100.0
5 TraesCS2D01G062300 chr2D 85.000 100 10 3 749 844 646590248 646590150 1.970000e-16 97.1
6 TraesCS2D01G062300 chr2D 100.000 31 0 0 1851 1881 26347774 26347804 9.300000e-05 58.4
7 TraesCS2D01G062300 chr2A 95.256 527 24 1 911 1436 751945966 751945440 0.000000e+00 833.0
8 TraesCS2D01G062300 chr2A 95.048 525 25 1 911 1435 38813524 38814047 0.000000e+00 824.0
9 TraesCS2D01G062300 chr2A 94.466 524 28 1 911 1434 691537806 691538328 0.000000e+00 806.0
10 TraesCS2D01G062300 chr2A 82.861 846 106 21 73 911 28663385 28664198 0.000000e+00 723.0
11 TraesCS2D01G062300 chr2A 82.976 793 99 21 93 877 28661298 28662062 0.000000e+00 684.0
12 TraesCS2D01G062300 chr2A 78.306 673 81 25 1433 2083 28662110 28662739 8.130000e-100 374.0
13 TraesCS2D01G062300 chr2A 88.800 250 21 4 1549 1792 28680404 28680652 1.400000e-77 300.0
14 TraesCS2D01G062300 chr2A 81.283 374 54 12 82 450 28659645 28660007 3.030000e-74 289.0
15 TraesCS2D01G062300 chr2A 85.333 225 13 10 1792 1996 28664416 28664640 5.210000e-52 215.0
16 TraesCS2D01G062300 chr2A 84.277 159 13 4 1891 2039 28680793 28680949 6.940000e-31 145.0
17 TraesCS2D01G062300 chr2A 100.000 32 0 0 1851 1882 28680819 28680850 2.590000e-05 60.2
18 TraesCS2D01G062300 chr6A 95.048 525 26 0 911 1435 573401228 573400704 0.000000e+00 826.0
19 TraesCS2D01G062300 chr4A 95.048 525 25 1 911 1435 583725320 583724797 0.000000e+00 824.0
20 TraesCS2D01G062300 chr5D 91.619 525 41 2 911 1432 505910787 505910263 0.000000e+00 723.0
21 TraesCS2D01G062300 chr5D 78.289 456 59 21 410 861 420704652 420704233 8.540000e-65 257.0
22 TraesCS2D01G062300 chr5D 72.388 268 60 11 371 631 537685157 537685417 3.320000e-09 73.1
23 TraesCS2D01G062300 chr3B 91.619 525 41 1 912 1436 578287097 578286576 0.000000e+00 723.0
24 TraesCS2D01G062300 chr1A 90.857 525 46 2 911 1434 543057103 543056580 0.000000e+00 702.0
25 TraesCS2D01G062300 chr5B 90.720 528 44 4 911 1435 705899184 705899709 0.000000e+00 699.0
26 TraesCS2D01G062300 chr2B 84.112 642 80 15 43 672 41437189 41436558 3.430000e-168 601.0
27 TraesCS2D01G062300 chr2B 84.109 623 66 15 1813 2408 41436388 41435772 2.690000e-159 571.0
28 TraesCS2D01G062300 chr2B 100.000 32 0 0 1851 1882 41436284 41436253 2.590000e-05 60.2
29 TraesCS2D01G062300 chr4D 80.462 563 100 9 304 862 56696792 56696236 2.860000e-114 422.0
30 TraesCS2D01G062300 chr4D 79.365 567 106 11 315 877 434892209 434892768 2.900000e-104 388.0
31 TraesCS2D01G062300 chr7A 78.487 595 102 22 315 892 220095705 220095120 1.360000e-97 366.0
32 TraesCS2D01G062300 chr7A 78.586 495 85 15 392 877 606263349 606262867 8.360000e-80 307.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G062300 chr2D 26456456 26458863 2407 False 4447.000000 4447 100.0000 1 2408 1 chr2D.!!$F3 2407
1 TraesCS2D01G062300 chr2A 751945440 751945966 526 True 833.000000 833 95.2560 911 1436 1 chr2A.!!$R1 525
2 TraesCS2D01G062300 chr2A 38813524 38814047 523 False 824.000000 824 95.0480 911 1435 1 chr2A.!!$F1 524
3 TraesCS2D01G062300 chr2A 691537806 691538328 522 False 806.000000 806 94.4660 911 1434 1 chr2A.!!$F2 523
4 TraesCS2D01G062300 chr2A 28659645 28664640 4995 False 457.000000 723 82.1518 73 2083 5 chr2A.!!$F3 2010
5 TraesCS2D01G062300 chr6A 573400704 573401228 524 True 826.000000 826 95.0480 911 1435 1 chr6A.!!$R1 524
6 TraesCS2D01G062300 chr4A 583724797 583725320 523 True 824.000000 824 95.0480 911 1435 1 chr4A.!!$R1 524
7 TraesCS2D01G062300 chr5D 505910263 505910787 524 True 723.000000 723 91.6190 911 1432 1 chr5D.!!$R2 521
8 TraesCS2D01G062300 chr3B 578286576 578287097 521 True 723.000000 723 91.6190 912 1436 1 chr3B.!!$R1 524
9 TraesCS2D01G062300 chr1A 543056580 543057103 523 True 702.000000 702 90.8570 911 1434 1 chr1A.!!$R1 523
10 TraesCS2D01G062300 chr5B 705899184 705899709 525 False 699.000000 699 90.7200 911 1435 1 chr5B.!!$F1 524
11 TraesCS2D01G062300 chr2B 41435772 41437189 1417 True 410.733333 601 89.4070 43 2408 3 chr2B.!!$R1 2365
12 TraesCS2D01G062300 chr4D 56696236 56696792 556 True 422.000000 422 80.4620 304 862 1 chr4D.!!$R1 558
13 TraesCS2D01G062300 chr4D 434892209 434892768 559 False 388.000000 388 79.3650 315 877 1 chr4D.!!$F1 562
14 TraesCS2D01G062300 chr7A 220095120 220095705 585 True 366.000000 366 78.4870 315 892 1 chr7A.!!$R1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.170561 CGTAAGAGTCTCCACGTGGG 59.829 60.0 33.4 23.32 43.02 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1523 4856 0.033504 ATATGACGTGCCCATCGACC 59.966 55.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.445878 CCTTACTACATCTACGTAGATATTCCA 57.554 37.037 32.06 17.53 40.91 3.53
39 40 8.954350 ACGTAGATATTCCATATAAAGCTACGT 58.046 33.333 15.67 15.67 43.26 3.57
47 48 8.461249 TTCCATATAAAGCTACGTAAGAGTCT 57.539 34.615 0.00 0.00 43.62 3.24
48 49 8.097078 TCCATATAAAGCTACGTAAGAGTCTC 57.903 38.462 0.00 0.00 43.62 3.36
49 50 7.174599 TCCATATAAAGCTACGTAAGAGTCTCC 59.825 40.741 0.00 0.00 43.62 3.71
51 52 4.437772 AAAGCTACGTAAGAGTCTCCAC 57.562 45.455 0.00 0.00 43.62 4.02
54 55 2.475852 GCTACGTAAGAGTCTCCACGTG 60.476 54.545 29.21 22.35 46.19 4.49
55 56 0.879765 ACGTAAGAGTCTCCACGTGG 59.120 55.000 29.26 29.26 45.14 4.94
56 57 0.170561 CGTAAGAGTCTCCACGTGGG 59.829 60.000 33.40 23.32 43.02 4.61
57 58 1.542492 GTAAGAGTCTCCACGTGGGA 58.458 55.000 33.40 25.13 45.89 4.37
59 60 5.571640 CGTAAGAGTCTCCACGTGGGATG 62.572 56.522 33.40 22.56 43.53 3.51
64 65 2.606213 TCCACGTGGGATGCCTGA 60.606 61.111 33.40 9.64 42.15 3.86
65 66 2.436646 CCACGTGGGATGCCTGAC 60.437 66.667 27.57 0.00 40.01 3.51
66 67 2.436646 CACGTGGGATGCCTGACC 60.437 66.667 7.95 0.00 0.00 4.02
68 69 1.305802 ACGTGGGATGCCTGACCTA 60.306 57.895 4.35 0.00 0.00 3.08
69 70 0.691078 ACGTGGGATGCCTGACCTAT 60.691 55.000 4.35 0.00 0.00 2.57
70 71 0.250038 CGTGGGATGCCTGACCTATG 60.250 60.000 4.35 0.00 0.00 2.23
71 72 0.839946 GTGGGATGCCTGACCTATGT 59.160 55.000 4.35 0.00 0.00 2.29
73 74 1.922447 TGGGATGCCTGACCTATGTTT 59.078 47.619 4.35 0.00 0.00 2.83
74 75 2.092429 TGGGATGCCTGACCTATGTTTC 60.092 50.000 4.35 0.00 0.00 2.78
75 76 2.173569 GGGATGCCTGACCTATGTTTCT 59.826 50.000 0.00 0.00 0.00 2.52
76 77 3.471680 GGATGCCTGACCTATGTTTCTC 58.528 50.000 0.00 0.00 0.00 2.87
77 78 3.471680 GATGCCTGACCTATGTTTCTCC 58.528 50.000 0.00 0.00 0.00 3.71
81 1319 3.491104 GCCTGACCTATGTTTCTCCGTAG 60.491 52.174 0.00 0.00 0.00 3.51
102 1340 3.638160 AGGTGTGCAATGTCATTTTCAGT 59.362 39.130 0.00 0.00 0.00 3.41
117 1355 0.955428 TCAGTGCGGTCCAATGCTTC 60.955 55.000 0.00 0.00 39.29 3.86
118 1356 2.034879 AGTGCGGTCCAATGCTTCG 61.035 57.895 0.00 0.00 0.00 3.79
133 1413 5.627499 ATGCTTCGTTATGTGTGTGAAAT 57.373 34.783 0.00 0.00 0.00 2.17
134 1414 4.782156 TGCTTCGTTATGTGTGTGAAATG 58.218 39.130 0.00 0.00 0.00 2.32
142 1422 7.589587 TCGTTATGTGTGTGAAATGTCATTTTC 59.410 33.333 12.04 9.18 35.80 2.29
144 1424 9.029243 GTTATGTGTGTGAAATGTCATTTTCAA 57.971 29.630 12.04 0.00 44.71 2.69
145 1425 9.761504 TTATGTGTGTGAAATGTCATTTTCAAT 57.238 25.926 12.04 8.12 44.71 2.57
155 1435 6.720112 ATGTCATTTTCAATGGGTCCTATG 57.280 37.500 0.00 0.00 0.00 2.23
156 1436 5.579047 TGTCATTTTCAATGGGTCCTATGT 58.421 37.500 0.00 0.00 0.00 2.29
157 1437 6.726379 TGTCATTTTCAATGGGTCCTATGTA 58.274 36.000 0.00 0.00 0.00 2.29
158 1438 6.601613 TGTCATTTTCAATGGGTCCTATGTAC 59.398 38.462 0.00 0.00 0.00 2.90
159 1439 5.820423 TCATTTTCAATGGGTCCTATGTACG 59.180 40.000 0.00 0.00 0.00 3.67
164 1444 5.849510 TCAATGGGTCCTATGTACGTAATG 58.150 41.667 0.00 0.00 0.00 1.90
176 1456 7.275779 CCTATGTACGTAATGCTTATCATGACC 59.724 40.741 0.00 0.00 33.67 4.02
178 1458 6.578944 TGTACGTAATGCTTATCATGACCTT 58.421 36.000 0.00 0.00 33.67 3.50
280 1840 5.875224 TGTCTCACCTAATGATTTCCACAA 58.125 37.500 0.00 0.00 36.48 3.33
297 1857 6.907853 TCCACAAATTTAATGGATGTGACA 57.092 33.333 16.01 0.00 43.01 3.58
298 1858 7.479352 TCCACAAATTTAATGGATGTGACAT 57.521 32.000 16.01 0.00 43.01 3.06
302 1862 7.813627 CACAAATTTAATGGATGTGACATGTCA 59.186 33.333 24.56 24.56 43.01 3.58
323 1883 4.591498 TCAATGTCACTAGTAGGGTTGTGT 59.409 41.667 0.00 0.00 0.00 3.72
326 1886 2.036733 GTCACTAGTAGGGTTGTGTGCA 59.963 50.000 0.00 0.00 0.00 4.57
327 1887 2.903784 TCACTAGTAGGGTTGTGTGCAT 59.096 45.455 0.00 0.00 0.00 3.96
330 1890 4.518970 CACTAGTAGGGTTGTGTGCATTTT 59.481 41.667 1.45 0.00 0.00 1.82
331 1891 4.518970 ACTAGTAGGGTTGTGTGCATTTTG 59.481 41.667 1.45 0.00 0.00 2.44
334 1894 1.485895 AGGGTTGTGTGCATTTTGCTT 59.514 42.857 0.00 0.00 45.31 3.91
335 1895 1.866601 GGGTTGTGTGCATTTTGCTTC 59.133 47.619 0.00 0.00 45.31 3.86
336 1896 2.548875 GGTTGTGTGCATTTTGCTTCA 58.451 42.857 0.00 0.00 45.31 3.02
338 1898 2.222007 TGTGTGCATTTTGCTTCACC 57.778 45.000 17.95 7.65 45.31 4.02
346 1906 3.186119 CATTTTGCTTCACCGTTTGTGT 58.814 40.909 0.00 0.00 45.61 3.72
348 1908 2.270275 TTGCTTCACCGTTTGTGTTG 57.730 45.000 0.00 0.00 45.61 3.33
351 1911 2.747989 TGCTTCACCGTTTGTGTTGTTA 59.252 40.909 0.00 0.00 45.61 2.41
353 1913 3.359654 CTTCACCGTTTGTGTTGTTAGC 58.640 45.455 0.00 0.00 45.61 3.09
390 1950 9.349713 AGAATTTATTTAGTTTGGTGTGTGAGA 57.650 29.630 0.00 0.00 0.00 3.27
391 1951 9.959749 GAATTTATTTAGTTTGGTGTGTGAGAA 57.040 29.630 0.00 0.00 0.00 2.87
394 1954 8.740123 TTATTTAGTTTGGTGTGTGAGAAAGA 57.260 30.769 0.00 0.00 0.00 2.52
406 1966 5.876460 TGTGTGAGAAAGATGATGGTGTATG 59.124 40.000 0.00 0.00 0.00 2.39
408 1968 5.876460 TGTGAGAAAGATGATGGTGTATGTG 59.124 40.000 0.00 0.00 0.00 3.21
441 2003 0.387565 ACACATTGTTTTCGTGGGCC 59.612 50.000 0.00 0.00 34.91 5.80
445 2007 1.069978 CATTGTTTTCGTGGGCCCTTT 59.930 47.619 25.70 0.00 0.00 3.11
446 2008 0.747852 TTGTTTTCGTGGGCCCTTTC 59.252 50.000 25.70 12.58 0.00 2.62
451 2013 0.250727 TTCGTGGGCCCTTTCTGAAG 60.251 55.000 25.70 3.38 0.00 3.02
452 2014 1.073199 CGTGGGCCCTTTCTGAAGT 59.927 57.895 25.70 0.00 0.00 3.01
453 2015 0.537371 CGTGGGCCCTTTCTGAAGTT 60.537 55.000 25.70 0.00 0.00 2.66
454 2016 0.961753 GTGGGCCCTTTCTGAAGTTG 59.038 55.000 25.70 0.00 0.00 3.16
455 2017 0.850100 TGGGCCCTTTCTGAAGTTGA 59.150 50.000 25.70 0.00 0.00 3.18
456 2018 1.202927 TGGGCCCTTTCTGAAGTTGAG 60.203 52.381 25.70 0.00 0.00 3.02
457 2019 1.073923 GGGCCCTTTCTGAAGTTGAGA 59.926 52.381 17.04 0.00 0.00 3.27
458 2020 2.291217 GGGCCCTTTCTGAAGTTGAGAT 60.291 50.000 17.04 0.00 0.00 2.75
459 2021 3.425659 GGCCCTTTCTGAAGTTGAGATT 58.574 45.455 0.00 0.00 0.00 2.40
460 2022 3.829026 GGCCCTTTCTGAAGTTGAGATTT 59.171 43.478 0.00 0.00 0.00 2.17
461 2023 4.281941 GGCCCTTTCTGAAGTTGAGATTTT 59.718 41.667 0.00 0.00 0.00 1.82
462 2024 5.225642 GCCCTTTCTGAAGTTGAGATTTTG 58.774 41.667 0.00 0.00 0.00 2.44
463 2025 5.221322 GCCCTTTCTGAAGTTGAGATTTTGT 60.221 40.000 0.00 0.00 0.00 2.83
464 2026 6.211515 CCCTTTCTGAAGTTGAGATTTTGTG 58.788 40.000 0.00 0.00 0.00 3.33
465 2027 6.183360 CCCTTTCTGAAGTTGAGATTTTGTGT 60.183 38.462 0.00 0.00 0.00 3.72
475 2037 8.034058 AGTTGAGATTTTGTGTTATCTGCTAC 57.966 34.615 0.00 0.00 31.46 3.58
480 2042 8.034058 AGATTTTGTGTTATCTGCTACTCAAC 57.966 34.615 0.00 0.00 30.28 3.18
486 2048 4.225042 TGTTATCTGCTACTCAACCCACAT 59.775 41.667 0.00 0.00 0.00 3.21
514 2076 4.722842 GGAAAAGTTTCTTGCGCTGGCA 62.723 50.000 9.73 0.00 40.99 4.92
529 2091 3.739830 CGCTGGCAACCACATGTACTATA 60.740 47.826 0.00 0.00 0.00 1.31
532 2094 5.995282 GCTGGCAACCACATGTACTATATTA 59.005 40.000 0.00 0.00 0.00 0.98
542 2104 9.701098 CCACATGTACTATATTATGTTACGGTT 57.299 33.333 0.00 0.00 31.84 4.44
579 2141 3.765381 TCATTTTTGCCAGGTGATGAGA 58.235 40.909 0.00 0.00 0.00 3.27
584 2146 0.325933 TGCCAGGTGATGAGAGGTTG 59.674 55.000 0.00 0.00 0.00 3.77
585 2147 1.028868 GCCAGGTGATGAGAGGTTGC 61.029 60.000 0.00 0.00 0.00 4.17
586 2148 0.742281 CCAGGTGATGAGAGGTTGCG 60.742 60.000 0.00 0.00 0.00 4.85
587 2149 1.078848 AGGTGATGAGAGGTTGCGC 60.079 57.895 0.00 0.00 0.00 6.09
588 2150 2.456119 GGTGATGAGAGGTTGCGCG 61.456 63.158 0.00 0.00 0.00 6.86
589 2151 1.446099 GTGATGAGAGGTTGCGCGA 60.446 57.895 12.10 0.00 0.00 5.87
594 2157 1.515304 GAGAGGTTGCGCGAGACTC 60.515 63.158 12.10 17.52 0.00 3.36
599 2162 1.417592 GTTGCGCGAGACTCATGTG 59.582 57.895 12.10 0.00 0.00 3.21
607 2170 4.032445 GCGCGAGACTCATGTGTTTTTATA 59.968 41.667 12.10 0.00 0.00 0.98
612 2175 6.237942 CGAGACTCATGTGTTTTTATAGGCTG 60.238 42.308 2.82 0.00 0.00 4.85
632 2195 4.414852 CTGGTTGTTGCCGATTGATTTAG 58.585 43.478 0.00 0.00 0.00 1.85
637 2200 6.128929 GGTTGTTGCCGATTGATTTAGAAAAC 60.129 38.462 0.00 0.00 0.00 2.43
638 2201 5.465935 TGTTGCCGATTGATTTAGAAAACC 58.534 37.500 0.00 0.00 0.00 3.27
640 2203 5.713792 TGCCGATTGATTTAGAAAACCAA 57.286 34.783 0.00 0.00 0.00 3.67
643 2206 6.071672 TGCCGATTGATTTAGAAAACCAATGA 60.072 34.615 0.00 0.00 0.00 2.57
645 2208 7.312154 CCGATTGATTTAGAAAACCAATGACA 58.688 34.615 0.00 0.00 0.00 3.58
646 2209 7.273381 CCGATTGATTTAGAAAACCAATGACAC 59.727 37.037 0.00 0.00 0.00 3.67
668 2231 5.406175 CACGGTCAAAATCATGAAGCAAATT 59.594 36.000 0.00 0.00 0.00 1.82
701 2264 4.093408 ACACCTCGATCAAAATCATTGACG 59.907 41.667 0.00 1.05 31.76 4.35
720 2283 3.214328 ACGCAGTCAAAATTCTGAACCT 58.786 40.909 0.00 0.00 29.74 3.50
726 2289 5.709164 CAGTCAAAATTCTGAACCTGATCCT 59.291 40.000 0.00 0.00 34.02 3.24
731 2294 8.960591 TCAAAATTCTGAACCTGATCCTAAATC 58.039 33.333 0.00 0.00 0.00 2.17
741 2304 4.141937 CCTGATCCTAAATCGAACACCTCA 60.142 45.833 0.00 0.00 0.00 3.86
742 2305 5.414789 TGATCCTAAATCGAACACCTCAA 57.585 39.130 0.00 0.00 0.00 3.02
745 2308 6.316140 TGATCCTAAATCGAACACCTCAATTG 59.684 38.462 0.00 0.00 0.00 2.32
751 2314 9.490663 CTAAATCGAACACCTCAATTGAATAAC 57.509 33.333 9.88 0.00 0.00 1.89
753 2316 6.869315 TCGAACACCTCAATTGAATAACAA 57.131 33.333 9.88 0.00 42.95 2.83
760 2323 8.805175 ACACCTCAATTGAATAACAATCATGAA 58.195 29.630 9.88 0.00 46.90 2.57
761 2324 9.079833 CACCTCAATTGAATAACAATCATGAAC 57.920 33.333 9.88 0.00 46.90 3.18
848 2412 2.548057 TGAACACCTCAATTGAACGAGC 59.452 45.455 9.88 0.00 0.00 5.03
861 2425 5.450376 TTGAACGAGCGAGCTAAAATTAG 57.550 39.130 0.00 0.00 0.00 1.73
869 2433 4.347000 AGCGAGCTAAAATTAGGGTCCATA 59.653 41.667 0.00 0.00 0.00 2.74
877 2441 8.784043 GCTAAAATTAGGGTCCATAGTGTATTG 58.216 37.037 2.61 0.00 0.00 1.90
878 2442 9.847224 CTAAAATTAGGGTCCATAGTGTATTGT 57.153 33.333 0.00 0.00 0.00 2.71
881 2445 8.792830 AATTAGGGTCCATAGTGTATTGTAGA 57.207 34.615 0.00 0.00 0.00 2.59
884 2448 9.529823 TTAGGGTCCATAGTGTATTGTAGATAG 57.470 37.037 0.00 0.00 0.00 2.08
885 2449 7.536625 AGGGTCCATAGTGTATTGTAGATAGT 58.463 38.462 0.00 0.00 0.00 2.12
918 2493 7.452880 TTCATTTAACATTTCTCCTCCTGTG 57.547 36.000 0.00 0.00 0.00 3.66
953 2528 1.672356 CAGAGGGTTGGGTGAAGCG 60.672 63.158 0.00 0.00 32.41 4.68
1365 4448 1.307866 GGGATCAGGACCCCCAGAA 60.308 63.158 0.00 0.00 41.38 3.02
1475 4805 8.894768 AATGCACTCTGACTATCTAATAAACC 57.105 34.615 0.00 0.00 0.00 3.27
1480 4810 9.307121 CACTCTGACTATCTAATAAACCTGTTG 57.693 37.037 0.00 0.00 0.00 3.33
1508 4841 7.175990 TGAAAGTTCTTTTACTTTGGTCACTGT 59.824 33.333 6.49 0.00 45.68 3.55
1510 4843 8.747538 AAGTTCTTTTACTTTGGTCACTGTAT 57.252 30.769 0.00 0.00 34.81 2.29
1511 4844 9.841295 AAGTTCTTTTACTTTGGTCACTGTATA 57.159 29.630 0.00 0.00 34.81 1.47
1512 4845 9.269453 AGTTCTTTTACTTTGGTCACTGTATAC 57.731 33.333 0.00 0.00 0.00 1.47
1513 4846 9.269453 GTTCTTTTACTTTGGTCACTGTATACT 57.731 33.333 4.17 0.00 0.00 2.12
1514 4847 9.485206 TTCTTTTACTTTGGTCACTGTATACTC 57.515 33.333 4.17 0.00 0.00 2.59
1515 4848 7.811236 TCTTTTACTTTGGTCACTGTATACTCG 59.189 37.037 4.17 0.00 0.00 4.18
1516 4849 6.822667 TTACTTTGGTCACTGTATACTCGA 57.177 37.500 4.17 0.00 0.00 4.04
1517 4850 5.312120 ACTTTGGTCACTGTATACTCGAG 57.688 43.478 11.84 11.84 0.00 4.04
1518 4851 3.777465 TTGGTCACTGTATACTCGAGC 57.223 47.619 13.61 7.96 0.00 5.03
1519 4852 2.718563 TGGTCACTGTATACTCGAGCA 58.281 47.619 13.61 0.00 0.00 4.26
1520 4853 2.683362 TGGTCACTGTATACTCGAGCAG 59.317 50.000 13.61 13.89 35.31 4.24
1521 4854 2.683867 GGTCACTGTATACTCGAGCAGT 59.316 50.000 13.61 14.56 42.18 4.40
1522 4855 3.128938 GGTCACTGTATACTCGAGCAGTT 59.871 47.826 17.49 0.00 39.82 3.16
1523 4856 4.099120 GTCACTGTATACTCGAGCAGTTG 58.901 47.826 17.49 13.69 39.82 3.16
1524 4857 3.128764 TCACTGTATACTCGAGCAGTTGG 59.871 47.826 17.49 10.02 39.82 3.77
1525 4858 3.090037 ACTGTATACTCGAGCAGTTGGT 58.910 45.455 13.61 2.57 38.86 3.67
1526 4859 3.128938 ACTGTATACTCGAGCAGTTGGTC 59.871 47.826 13.61 1.33 38.86 4.02
1532 4865 4.208632 GAGCAGTTGGTCGATGGG 57.791 61.111 0.00 0.00 32.58 4.00
1533 4866 2.045926 AGCAGTTGGTCGATGGGC 60.046 61.111 0.00 0.00 0.00 5.36
1534 4867 2.359850 GCAGTTGGTCGATGGGCA 60.360 61.111 0.00 0.00 0.00 5.36
1535 4868 2.690778 GCAGTTGGTCGATGGGCAC 61.691 63.158 0.00 0.00 0.00 5.01
1536 4869 2.047274 AGTTGGTCGATGGGCACG 60.047 61.111 0.00 0.00 0.00 5.34
1537 4870 2.358247 GTTGGTCGATGGGCACGT 60.358 61.111 0.00 0.00 0.00 4.49
1538 4871 2.047655 TTGGTCGATGGGCACGTC 60.048 61.111 0.00 0.00 0.00 4.34
1539 4872 2.873525 TTGGTCGATGGGCACGTCA 61.874 57.895 9.27 0.00 32.73 4.35
1540 4873 2.178876 TTGGTCGATGGGCACGTCAT 62.179 55.000 9.27 0.00 32.73 3.06
1541 4874 1.324005 TGGTCGATGGGCACGTCATA 61.324 55.000 9.27 0.00 32.73 2.15
1542 4875 0.033504 GGTCGATGGGCACGTCATAT 59.966 55.000 9.27 0.00 32.73 1.78
1543 4876 1.271379 GGTCGATGGGCACGTCATATA 59.729 52.381 9.27 0.00 32.73 0.86
1544 4877 2.325761 GTCGATGGGCACGTCATATAC 58.674 52.381 9.27 0.00 32.73 1.47
1545 4878 1.271379 TCGATGGGCACGTCATATACC 59.729 52.381 9.27 0.00 32.73 2.73
1546 4879 1.710013 GATGGGCACGTCATATACCG 58.290 55.000 2.42 0.00 32.73 4.02
1547 4880 1.271379 GATGGGCACGTCATATACCGA 59.729 52.381 2.42 0.00 32.73 4.69
1548 4881 1.112950 TGGGCACGTCATATACCGAA 58.887 50.000 0.00 0.00 0.00 4.30
1554 4887 5.224888 GGCACGTCATATACCGAATAGAAA 58.775 41.667 0.00 0.00 0.00 2.52
1559 4892 6.807230 ACGTCATATACCGAATAGAAATCTGC 59.193 38.462 0.69 0.00 0.00 4.26
1564 4897 1.787155 CCGAATAGAAATCTGCGTCCG 59.213 52.381 0.00 0.00 0.00 4.79
1596 4929 5.596836 AACAACAATGAACCATCTGTGTT 57.403 34.783 0.00 0.00 35.19 3.32
1597 4930 4.935702 ACAACAATGAACCATCTGTGTTG 58.064 39.130 15.66 15.66 45.90 3.33
1598 4931 4.644234 ACAACAATGAACCATCTGTGTTGA 59.356 37.500 20.60 0.00 44.74 3.18
1599 4932 5.302568 ACAACAATGAACCATCTGTGTTGAT 59.697 36.000 20.60 9.25 44.74 2.57
1600 4933 6.183360 ACAACAATGAACCATCTGTGTTGATT 60.183 34.615 20.60 0.68 44.74 2.57
1601 4934 6.409524 ACAATGAACCATCTGTGTTGATTT 57.590 33.333 0.00 0.00 28.96 2.17
1602 4935 6.449698 ACAATGAACCATCTGTGTTGATTTC 58.550 36.000 0.00 0.00 28.96 2.17
1603 4936 6.040729 ACAATGAACCATCTGTGTTGATTTCA 59.959 34.615 0.00 0.00 28.96 2.69
1604 4937 6.845758 ATGAACCATCTGTGTTGATTTCAT 57.154 33.333 0.00 0.00 33.01 2.57
1605 4938 6.653526 TGAACCATCTGTGTTGATTTCATT 57.346 33.333 0.00 0.00 0.00 2.57
1606 4939 7.757941 TGAACCATCTGTGTTGATTTCATTA 57.242 32.000 0.00 0.00 0.00 1.90
1607 4940 8.175925 TGAACCATCTGTGTTGATTTCATTAA 57.824 30.769 0.00 0.00 0.00 1.40
1608 4941 8.081633 TGAACCATCTGTGTTGATTTCATTAAC 58.918 33.333 0.00 0.00 0.00 2.01
1609 4942 7.523293 ACCATCTGTGTTGATTTCATTAACA 57.477 32.000 0.00 0.00 36.56 2.41
1610 4943 7.950512 ACCATCTGTGTTGATTTCATTAACAA 58.049 30.769 0.00 0.00 39.91 2.83
1611 4944 8.084073 ACCATCTGTGTTGATTTCATTAACAAG 58.916 33.333 0.00 0.00 39.91 3.16
1612 4945 8.298854 CCATCTGTGTTGATTTCATTAACAAGA 58.701 33.333 0.00 0.00 39.91 3.02
1613 4946 9.681692 CATCTGTGTTGATTTCATTAACAAGAA 57.318 29.630 0.00 0.00 39.91 2.52
1626 4959 9.638239 TTCATTAACAAGAATAAATGGAACTGC 57.362 29.630 0.00 0.00 31.66 4.40
1627 4960 8.250332 TCATTAACAAGAATAAATGGAACTGCC 58.750 33.333 0.00 0.00 31.66 4.85
1628 4961 7.775053 TTAACAAGAATAAATGGAACTGCCT 57.225 32.000 0.00 0.00 37.63 4.75
1629 4962 8.871629 TTAACAAGAATAAATGGAACTGCCTA 57.128 30.769 0.00 0.00 37.63 3.93
1630 4963 7.775053 AACAAGAATAAATGGAACTGCCTAA 57.225 32.000 0.00 0.00 37.63 2.69
1631 4964 7.158099 ACAAGAATAAATGGAACTGCCTAAC 57.842 36.000 0.00 0.00 37.63 2.34
1632 4965 6.152831 ACAAGAATAAATGGAACTGCCTAACC 59.847 38.462 0.00 0.00 37.63 2.85
1633 4966 5.826643 AGAATAAATGGAACTGCCTAACCA 58.173 37.500 0.00 0.00 37.63 3.67
1634 4967 6.435164 AGAATAAATGGAACTGCCTAACCAT 58.565 36.000 0.00 0.00 43.74 3.55
1637 4970 2.969821 TGGAACTGCCTAACCATTGT 57.030 45.000 0.00 0.00 37.63 2.71
1638 4971 2.513753 TGGAACTGCCTAACCATTGTG 58.486 47.619 0.00 0.00 37.63 3.33
1639 4972 2.158534 TGGAACTGCCTAACCATTGTGT 60.159 45.455 0.00 0.00 37.63 3.72
1640 4973 2.488153 GGAACTGCCTAACCATTGTGTC 59.512 50.000 0.00 0.00 0.00 3.67
1641 4974 3.412386 GAACTGCCTAACCATTGTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
1642 4975 2.783135 ACTGCCTAACCATTGTGTCTG 58.217 47.619 0.00 0.00 0.00 3.51
1643 4976 2.371841 ACTGCCTAACCATTGTGTCTGA 59.628 45.455 0.00 0.00 0.00 3.27
1644 4977 3.009473 ACTGCCTAACCATTGTGTCTGAT 59.991 43.478 0.00 0.00 0.00 2.90
1645 4978 4.012374 CTGCCTAACCATTGTGTCTGATT 58.988 43.478 0.00 0.00 0.00 2.57
1646 4979 4.009675 TGCCTAACCATTGTGTCTGATTC 58.990 43.478 0.00 0.00 0.00 2.52
1647 4980 3.063997 GCCTAACCATTGTGTCTGATTCG 59.936 47.826 0.00 0.00 0.00 3.34
1648 4981 4.503910 CCTAACCATTGTGTCTGATTCGA 58.496 43.478 0.00 0.00 0.00 3.71
1649 4982 5.118990 CCTAACCATTGTGTCTGATTCGAT 58.881 41.667 0.00 0.00 0.00 3.59
1650 4983 6.280643 CCTAACCATTGTGTCTGATTCGATA 58.719 40.000 0.00 0.00 0.00 2.92
1651 4984 6.761242 CCTAACCATTGTGTCTGATTCGATAA 59.239 38.462 0.00 0.00 0.00 1.75
1652 4985 6.668541 AACCATTGTGTCTGATTCGATAAG 57.331 37.500 0.00 0.00 0.00 1.73
1653 4986 5.977635 ACCATTGTGTCTGATTCGATAAGA 58.022 37.500 0.00 0.00 0.00 2.10
1654 4987 6.586344 ACCATTGTGTCTGATTCGATAAGAT 58.414 36.000 0.00 0.00 0.00 2.40
1655 4988 6.481313 ACCATTGTGTCTGATTCGATAAGATG 59.519 38.462 0.00 0.00 0.00 2.90
1656 4989 6.703165 CCATTGTGTCTGATTCGATAAGATGA 59.297 38.462 0.00 0.00 0.00 2.92
1657 4990 7.225341 CCATTGTGTCTGATTCGATAAGATGAA 59.775 37.037 0.00 0.00 0.00 2.57
1658 4991 8.771766 CATTGTGTCTGATTCGATAAGATGAAT 58.228 33.333 0.00 0.00 37.52 2.57
1659 4992 9.987272 ATTGTGTCTGATTCGATAAGATGAATA 57.013 29.630 0.00 0.00 35.06 1.75
1660 4993 9.468532 TTGTGTCTGATTCGATAAGATGAATAG 57.531 33.333 0.00 0.00 35.06 1.73
1661 4994 8.850156 TGTGTCTGATTCGATAAGATGAATAGA 58.150 33.333 0.00 0.00 35.06 1.98
1662 4995 9.684448 GTGTCTGATTCGATAAGATGAATAGAA 57.316 33.333 0.00 0.00 35.06 2.10
1663 4996 9.684448 TGTCTGATTCGATAAGATGAATAGAAC 57.316 33.333 0.00 0.00 35.06 3.01
1664 4997 9.134734 GTCTGATTCGATAAGATGAATAGAACC 57.865 37.037 0.00 0.00 35.06 3.62
1665 4998 9.083422 TCTGATTCGATAAGATGAATAGAACCT 57.917 33.333 0.00 0.00 35.06 3.50
1666 4999 9.703892 CTGATTCGATAAGATGAATAGAACCTT 57.296 33.333 0.00 0.00 35.06 3.50
1667 5000 9.481340 TGATTCGATAAGATGAATAGAACCTTG 57.519 33.333 0.00 0.00 35.06 3.61
1668 5001 9.698309 GATTCGATAAGATGAATAGAACCTTGA 57.302 33.333 0.00 0.00 35.06 3.02
1669 5002 8.873215 TTCGATAAGATGAATAGAACCTTGAC 57.127 34.615 0.00 0.00 0.00 3.18
1670 5003 7.434492 TCGATAAGATGAATAGAACCTTGACC 58.566 38.462 0.00 0.00 0.00 4.02
1671 5004 7.069455 TCGATAAGATGAATAGAACCTTGACCA 59.931 37.037 0.00 0.00 0.00 4.02
1672 5005 7.169982 CGATAAGATGAATAGAACCTTGACCAC 59.830 40.741 0.00 0.00 0.00 4.16
1673 5006 5.762179 AGATGAATAGAACCTTGACCACA 57.238 39.130 0.00 0.00 0.00 4.17
1674 5007 6.319048 AGATGAATAGAACCTTGACCACAT 57.681 37.500 0.00 0.00 0.00 3.21
1675 5008 6.725364 AGATGAATAGAACCTTGACCACATT 58.275 36.000 0.00 0.00 0.00 2.71
1676 5009 7.861629 AGATGAATAGAACCTTGACCACATTA 58.138 34.615 0.00 0.00 0.00 1.90
1677 5010 8.328758 AGATGAATAGAACCTTGACCACATTAA 58.671 33.333 0.00 0.00 0.00 1.40
1678 5011 7.921786 TGAATAGAACCTTGACCACATTAAG 57.078 36.000 0.00 0.00 0.00 1.85
1679 5012 7.458397 TGAATAGAACCTTGACCACATTAAGT 58.542 34.615 0.00 0.00 0.00 2.24
1680 5013 7.606456 TGAATAGAACCTTGACCACATTAAGTC 59.394 37.037 0.00 0.00 0.00 3.01
1681 5014 5.304686 AGAACCTTGACCACATTAAGTCA 57.695 39.130 0.00 0.00 41.13 3.41
1682 5015 5.308825 AGAACCTTGACCACATTAAGTCAG 58.691 41.667 0.00 0.00 43.48 3.51
1683 5016 4.974645 ACCTTGACCACATTAAGTCAGA 57.025 40.909 0.00 0.00 43.48 3.27
1684 5017 5.505181 ACCTTGACCACATTAAGTCAGAT 57.495 39.130 0.00 0.00 43.48 2.90
1685 5018 5.880901 ACCTTGACCACATTAAGTCAGATT 58.119 37.500 0.00 0.00 43.48 2.40
1686 5019 6.306987 ACCTTGACCACATTAAGTCAGATTT 58.693 36.000 0.00 0.00 43.48 2.17
1687 5020 6.207417 ACCTTGACCACATTAAGTCAGATTTG 59.793 38.462 0.00 0.00 43.48 2.32
1688 5021 5.627499 TGACCACATTAAGTCAGATTTGC 57.373 39.130 0.00 0.00 38.07 3.68
1689 5022 5.316167 TGACCACATTAAGTCAGATTTGCT 58.684 37.500 0.00 0.00 38.07 3.91
1690 5023 6.472016 TGACCACATTAAGTCAGATTTGCTA 58.528 36.000 0.00 0.00 38.07 3.49
1691 5024 6.939730 TGACCACATTAAGTCAGATTTGCTAA 59.060 34.615 0.00 0.00 38.07 3.09
1692 5025 7.611467 TGACCACATTAAGTCAGATTTGCTAAT 59.389 33.333 0.00 0.00 38.07 1.73
1693 5026 7.989826 ACCACATTAAGTCAGATTTGCTAATC 58.010 34.615 12.28 12.28 40.42 1.75
1694 5027 7.128331 CCACATTAAGTCAGATTTGCTAATCG 58.872 38.462 13.95 9.82 43.99 3.34
1695 5028 7.011389 CCACATTAAGTCAGATTTGCTAATCGA 59.989 37.037 13.95 11.63 43.99 3.59
1696 5029 7.848051 CACATTAAGTCAGATTTGCTAATCGAC 59.152 37.037 23.71 23.71 43.99 4.20
1697 5030 6.569228 TTAAGTCAGATTTGCTAATCGACG 57.431 37.500 24.21 15.28 43.99 5.12
1698 5031 2.860735 AGTCAGATTTGCTAATCGACGC 59.139 45.455 24.21 14.45 43.99 5.19
1699 5032 2.603110 GTCAGATTTGCTAATCGACGCA 59.397 45.455 20.14 2.15 43.99 5.24
1700 5033 3.246226 GTCAGATTTGCTAATCGACGCAT 59.754 43.478 20.14 2.62 43.99 4.73
1701 5034 3.245990 TCAGATTTGCTAATCGACGCATG 59.754 43.478 13.95 7.10 43.99 4.06
1702 5035 3.001634 CAGATTTGCTAATCGACGCATGT 59.998 43.478 13.95 0.15 43.99 3.21
1703 5036 3.623060 AGATTTGCTAATCGACGCATGTT 59.377 39.130 13.95 0.00 43.99 2.71
1704 5037 3.383546 TTTGCTAATCGACGCATGTTC 57.616 42.857 6.69 0.00 35.85 3.18
1705 5038 2.293677 TGCTAATCGACGCATGTTCT 57.706 45.000 2.15 0.00 0.00 3.01
1706 5039 1.926510 TGCTAATCGACGCATGTTCTG 59.073 47.619 2.15 0.00 0.00 3.02
1707 5040 1.927174 GCTAATCGACGCATGTTCTGT 59.073 47.619 0.00 0.00 0.00 3.41
1708 5041 2.034507 GCTAATCGACGCATGTTCTGTC 60.035 50.000 0.00 0.00 0.00 3.51
1709 5042 1.359848 AATCGACGCATGTTCTGTCC 58.640 50.000 0.00 0.00 0.00 4.02
1710 5043 0.246360 ATCGACGCATGTTCTGTCCA 59.754 50.000 0.00 0.00 0.00 4.02
1711 5044 0.388520 TCGACGCATGTTCTGTCCAG 60.389 55.000 0.00 0.00 0.00 3.86
1712 5045 0.388520 CGACGCATGTTCTGTCCAGA 60.389 55.000 0.00 0.00 35.27 3.86
1713 5046 1.737029 CGACGCATGTTCTGTCCAGAT 60.737 52.381 0.00 0.00 37.29 2.90
1714 5047 2.350522 GACGCATGTTCTGTCCAGATT 58.649 47.619 0.00 0.00 37.29 2.40
1715 5048 3.521560 GACGCATGTTCTGTCCAGATTA 58.478 45.455 0.00 0.00 37.29 1.75
1716 5049 4.122776 GACGCATGTTCTGTCCAGATTAT 58.877 43.478 0.00 0.00 37.29 1.28
1717 5050 4.122776 ACGCATGTTCTGTCCAGATTATC 58.877 43.478 0.00 0.00 37.29 1.75
1718 5051 4.141846 ACGCATGTTCTGTCCAGATTATCT 60.142 41.667 0.00 0.00 37.29 1.98
1719 5052 4.447054 CGCATGTTCTGTCCAGATTATCTC 59.553 45.833 0.00 0.00 37.29 2.75
1720 5053 5.363101 GCATGTTCTGTCCAGATTATCTCA 58.637 41.667 0.00 0.00 37.29 3.27
1721 5054 5.466058 GCATGTTCTGTCCAGATTATCTCAG 59.534 44.000 0.00 0.00 37.29 3.35
1722 5055 6.580788 CATGTTCTGTCCAGATTATCTCAGT 58.419 40.000 8.58 0.00 37.29 3.41
1723 5056 7.685398 GCATGTTCTGTCCAGATTATCTCAGTA 60.685 40.741 8.58 0.00 37.29 2.74
1724 5057 7.904558 TGTTCTGTCCAGATTATCTCAGTAT 57.095 36.000 8.58 0.00 37.29 2.12
1725 5058 7.720442 TGTTCTGTCCAGATTATCTCAGTATG 58.280 38.462 8.58 0.00 37.29 2.39
1726 5059 6.338214 TCTGTCCAGATTATCTCAGTATGC 57.662 41.667 8.58 0.00 30.81 3.14
1727 5060 6.073981 TCTGTCCAGATTATCTCAGTATGCT 58.926 40.000 8.58 0.00 30.81 3.79
1728 5061 6.208402 TCTGTCCAGATTATCTCAGTATGCTC 59.792 42.308 8.58 0.00 30.81 4.26
1729 5062 5.244851 TGTCCAGATTATCTCAGTATGCTCC 59.755 44.000 0.00 0.00 34.76 4.70
1730 5063 5.480073 GTCCAGATTATCTCAGTATGCTCCT 59.520 44.000 0.00 0.00 34.76 3.69
1731 5064 6.014669 GTCCAGATTATCTCAGTATGCTCCTT 60.015 42.308 0.00 0.00 34.76 3.36
1746 5079 1.001406 CTCCTTTGAGCACGTTCCTCT 59.999 52.381 12.65 0.00 0.00 3.69
1780 5113 1.344438 TCTGACATTTCTCCACGCTGT 59.656 47.619 0.00 0.00 0.00 4.40
1866 5237 1.164662 AGCTGCCATTATGCTCTGCG 61.165 55.000 0.00 0.00 30.41 5.18
1868 5239 1.869774 CTGCCATTATGCTCTGCGTA 58.130 50.000 0.00 0.00 0.00 4.42
1936 5312 2.549064 TGCCATTATGCTCTGCGTAT 57.451 45.000 0.00 0.00 29.74 3.06
1937 5313 2.849942 TGCCATTATGCTCTGCGTATT 58.150 42.857 0.00 0.00 29.74 1.89
1938 5314 2.807967 TGCCATTATGCTCTGCGTATTC 59.192 45.455 0.00 0.00 29.74 1.75
1974 5360 3.068064 TCACTCTCGCCGCCATGA 61.068 61.111 0.00 0.00 0.00 3.07
2006 5392 1.006805 CACGCCCTCCTCGATCATC 60.007 63.158 0.00 0.00 0.00 2.92
2016 5402 0.033920 CTCGATCATCCGCCAATGGA 59.966 55.000 2.05 0.00 43.58 3.41
2028 5414 1.396653 CCAATGGACATCCTTGAGCC 58.603 55.000 0.00 0.00 36.82 4.70
2029 5415 1.396653 CAATGGACATCCTTGAGCCC 58.603 55.000 0.00 0.00 36.82 5.19
2039 5425 4.722700 TTGAGCCCAGCCTTCCGC 62.723 66.667 0.00 0.00 37.98 5.54
2063 5454 4.289245 CCCATTCTTACATTTCCCCACAT 58.711 43.478 0.00 0.00 0.00 3.21
2086 5477 3.707458 TGCCGGCCGTCCACATTA 61.707 61.111 26.77 0.00 0.00 1.90
2087 5478 3.199891 GCCGGCCGTCCACATTAC 61.200 66.667 26.12 0.00 0.00 1.89
2088 5479 2.888534 CCGGCCGTCCACATTACG 60.889 66.667 26.12 0.00 40.01 3.18
2122 5514 3.636231 CAGGCCGTCCACCTTCCA 61.636 66.667 0.00 0.00 34.42 3.53
2123 5515 3.637273 AGGCCGTCCACCTTCCAC 61.637 66.667 0.00 0.00 31.87 4.02
2247 5640 2.792599 GTCGACCTCTGCGACGAT 59.207 61.111 3.51 0.00 46.85 3.73
2262 5655 3.399181 GATGACCCGGGACTGCCA 61.399 66.667 32.02 16.45 35.15 4.92
2263 5656 3.682292 GATGACCCGGGACTGCCAC 62.682 68.421 32.02 8.46 35.15 5.01
2271 5664 3.112709 GGACTGCCACGTTCTCGC 61.113 66.667 0.00 0.00 41.18 5.03
2277 5670 2.049433 CCACGTTCTCGCCGAGTT 60.049 61.111 14.64 0.00 41.18 3.01
2280 5673 2.257371 CGTTCTCGCCGAGTTCCA 59.743 61.111 14.64 0.00 0.00 3.53
2290 5683 0.882474 CCGAGTTCCACGTTCTCTCT 59.118 55.000 0.00 0.00 0.00 3.10
2291 5684 2.082231 CCGAGTTCCACGTTCTCTCTA 58.918 52.381 0.00 0.00 0.00 2.43
2309 5702 1.952102 TACGCTCGACCACCCATTCC 61.952 60.000 0.00 0.00 0.00 3.01
2374 5772 1.517257 CCTACGCGTGCTTCCTCTG 60.517 63.158 24.59 0.40 0.00 3.35
2384 5782 1.980765 TGCTTCCTCTGTTCTCCATGT 59.019 47.619 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.445878 TGGAATATCTACGTAGATGTAGTAAGG 57.554 37.037 36.98 6.08 42.66 2.69
22 23 8.461249 AGACTCTTACGTAGCTTTATATGGAA 57.539 34.615 0.00 0.00 0.00 3.53
23 24 7.174599 GGAGACTCTTACGTAGCTTTATATGGA 59.825 40.741 1.74 0.00 0.00 3.41
24 25 7.040617 TGGAGACTCTTACGTAGCTTTATATGG 60.041 40.741 1.74 0.00 0.00 2.74
25 26 7.804129 GTGGAGACTCTTACGTAGCTTTATATG 59.196 40.741 1.74 0.00 0.00 1.78
26 27 7.307870 CGTGGAGACTCTTACGTAGCTTTATAT 60.308 40.741 18.38 0.00 0.00 0.86
27 28 6.018425 CGTGGAGACTCTTACGTAGCTTTATA 60.018 42.308 18.38 0.00 0.00 0.98
29 30 4.093998 CGTGGAGACTCTTACGTAGCTTTA 59.906 45.833 18.38 0.00 0.00 1.85
30 31 3.119919 CGTGGAGACTCTTACGTAGCTTT 60.120 47.826 18.38 0.00 0.00 3.51
31 32 2.419324 CGTGGAGACTCTTACGTAGCTT 59.581 50.000 18.38 0.00 0.00 3.74
32 33 2.008329 CGTGGAGACTCTTACGTAGCT 58.992 52.381 18.38 0.00 0.00 3.32
33 34 1.736681 ACGTGGAGACTCTTACGTAGC 59.263 52.381 25.82 1.51 46.50 3.58
34 35 2.095532 CCACGTGGAGACTCTTACGTAG 59.904 54.545 31.31 19.84 46.62 3.51
38 39 1.542492 TCCCACGTGGAGACTCTTAC 58.458 55.000 36.07 1.73 38.61 2.34
40 41 4.945645 TCCCACGTGGAGACTCTT 57.054 55.556 36.07 0.00 38.61 2.85
48 49 2.436646 GTCAGGCATCCCACGTGG 60.437 66.667 28.26 28.26 0.00 4.94
49 50 1.613317 TAGGTCAGGCATCCCACGTG 61.613 60.000 9.08 9.08 0.00 4.49
51 52 0.250038 CATAGGTCAGGCATCCCACG 60.250 60.000 0.00 0.00 0.00 4.94
54 55 2.173569 AGAAACATAGGTCAGGCATCCC 59.826 50.000 0.00 0.00 0.00 3.85
55 56 3.471680 GAGAAACATAGGTCAGGCATCC 58.528 50.000 0.00 0.00 0.00 3.51
56 57 3.471680 GGAGAAACATAGGTCAGGCATC 58.528 50.000 0.00 0.00 0.00 3.91
57 58 2.158900 CGGAGAAACATAGGTCAGGCAT 60.159 50.000 0.00 0.00 0.00 4.40
59 60 1.207329 ACGGAGAAACATAGGTCAGGC 59.793 52.381 0.00 0.00 0.00 4.85
61 62 3.700038 ACCTACGGAGAAACATAGGTCAG 59.300 47.826 0.00 0.00 43.17 3.51
62 63 3.446161 CACCTACGGAGAAACATAGGTCA 59.554 47.826 0.00 0.00 44.53 4.02
63 64 3.446516 ACACCTACGGAGAAACATAGGTC 59.553 47.826 0.00 0.00 44.53 3.85
64 65 3.194968 CACACCTACGGAGAAACATAGGT 59.805 47.826 0.00 0.00 46.76 3.08
65 66 3.782046 CACACCTACGGAGAAACATAGG 58.218 50.000 0.00 0.00 40.16 2.57
66 67 3.187700 GCACACCTACGGAGAAACATAG 58.812 50.000 0.00 0.00 0.00 2.23
68 69 1.346395 TGCACACCTACGGAGAAACAT 59.654 47.619 0.00 0.00 0.00 2.71
69 70 0.753867 TGCACACCTACGGAGAAACA 59.246 50.000 0.00 0.00 0.00 2.83
70 71 1.873698 TTGCACACCTACGGAGAAAC 58.126 50.000 0.00 0.00 0.00 2.78
71 72 2.224426 ACATTGCACACCTACGGAGAAA 60.224 45.455 0.00 0.00 0.00 2.52
73 74 0.973632 ACATTGCACACCTACGGAGA 59.026 50.000 0.00 0.00 0.00 3.71
74 75 1.337728 TGACATTGCACACCTACGGAG 60.338 52.381 0.00 0.00 0.00 4.63
75 76 0.682292 TGACATTGCACACCTACGGA 59.318 50.000 0.00 0.00 0.00 4.69
76 77 1.737838 ATGACATTGCACACCTACGG 58.262 50.000 0.00 0.00 0.00 4.02
77 78 3.829886 AAATGACATTGCACACCTACG 57.170 42.857 0.34 0.00 0.00 3.51
81 1319 3.737266 CACTGAAAATGACATTGCACACC 59.263 43.478 0.34 0.00 0.00 4.16
87 1325 3.236816 GACCGCACTGAAAATGACATTG 58.763 45.455 0.34 0.00 0.00 2.82
102 1340 0.320858 TAACGAAGCATTGGACCGCA 60.321 50.000 0.00 0.00 0.00 5.69
104 1342 2.006888 ACATAACGAAGCATTGGACCG 58.993 47.619 0.00 0.00 0.00 4.79
117 1355 7.378194 TGAAAATGACATTTCACACACATAACG 59.622 33.333 13.68 0.00 42.68 3.18
118 1356 8.572828 TGAAAATGACATTTCACACACATAAC 57.427 30.769 13.68 0.00 42.68 1.89
133 1413 5.579047 ACATAGGACCCATTGAAAATGACA 58.421 37.500 1.54 0.00 0.00 3.58
134 1414 6.238374 CGTACATAGGACCCATTGAAAATGAC 60.238 42.308 1.54 0.00 0.00 3.06
142 1422 4.451096 GCATTACGTACATAGGACCCATTG 59.549 45.833 0.00 0.00 0.00 2.82
144 1424 3.901844 AGCATTACGTACATAGGACCCAT 59.098 43.478 0.00 0.00 0.00 4.00
145 1425 3.302161 AGCATTACGTACATAGGACCCA 58.698 45.455 0.00 0.00 0.00 4.51
155 1435 8.583810 TTAAGGTCATGATAAGCATTACGTAC 57.416 34.615 0.00 0.00 34.15 3.67
156 1436 9.203421 CATTAAGGTCATGATAAGCATTACGTA 57.797 33.333 0.00 0.00 34.15 3.57
157 1437 7.173218 CCATTAAGGTCATGATAAGCATTACGT 59.827 37.037 0.00 0.00 34.15 3.57
158 1438 7.387673 TCCATTAAGGTCATGATAAGCATTACG 59.612 37.037 0.00 0.00 39.02 3.18
159 1439 8.507249 GTCCATTAAGGTCATGATAAGCATTAC 58.493 37.037 0.00 0.00 39.02 1.89
164 1444 7.573968 AAAGTCCATTAAGGTCATGATAAGC 57.426 36.000 0.00 0.00 39.02 3.09
195 1475 7.872483 ACAAAAAGCATAGGTGAAACATTTAGG 59.128 33.333 0.00 0.00 39.98 2.69
223 1645 8.581578 ACACCGACTTTTTACATCCATTAAATT 58.418 29.630 0.00 0.00 0.00 1.82
234 1656 3.118702 TCCAGTGACACCGACTTTTTACA 60.119 43.478 0.84 0.00 0.00 2.41
235 1657 3.460103 TCCAGTGACACCGACTTTTTAC 58.540 45.455 0.84 0.00 0.00 2.01
237 1659 2.702592 TCCAGTGACACCGACTTTTT 57.297 45.000 0.84 0.00 0.00 1.94
239 1661 1.416401 ACATCCAGTGACACCGACTTT 59.584 47.619 0.84 0.00 0.00 2.66
240 1662 1.000955 GACATCCAGTGACACCGACTT 59.999 52.381 0.84 0.00 0.00 3.01
241 1663 0.603569 GACATCCAGTGACACCGACT 59.396 55.000 0.84 0.00 0.00 4.18
242 1664 0.603569 AGACATCCAGTGACACCGAC 59.396 55.000 0.84 0.00 0.00 4.79
244 1666 0.603065 TGAGACATCCAGTGACACCG 59.397 55.000 0.84 0.00 0.00 4.94
280 1840 8.533657 ACATTGACATGTCACATCCATTAAATT 58.466 29.630 27.88 4.00 39.69 1.82
297 1857 5.248477 ACAACCCTACTAGTGACATTGACAT 59.752 40.000 5.39 0.00 0.00 3.06
298 1858 4.591498 ACAACCCTACTAGTGACATTGACA 59.409 41.667 5.39 0.00 0.00 3.58
302 1862 4.802918 GCACACAACCCTACTAGTGACATT 60.803 45.833 5.39 0.00 35.97 2.71
336 1896 4.757657 TGATATGCTAACAACACAAACGGT 59.242 37.500 0.00 0.00 0.00 4.83
364 1924 9.349713 TCTCACACACCAAACTAAATAAATTCT 57.650 29.630 0.00 0.00 0.00 2.40
365 1925 9.959749 TTCTCACACACCAAACTAAATAAATTC 57.040 29.630 0.00 0.00 0.00 2.17
382 1942 4.356405 ACACCATCATCTTTCTCACACA 57.644 40.909 0.00 0.00 0.00 3.72
415 1977 7.422399 GCCCACGAAAACAATGTGTTATATAT 58.578 34.615 0.00 0.00 40.14 0.86
416 1978 6.183360 GGCCCACGAAAACAATGTGTTATATA 60.183 38.462 0.00 0.00 40.14 0.86
424 1986 0.469144 AGGGCCCACGAAAACAATGT 60.469 50.000 27.56 0.00 0.00 2.71
425 1987 0.678950 AAGGGCCCACGAAAACAATG 59.321 50.000 27.56 0.00 0.00 2.82
427 1989 0.747852 GAAAGGGCCCACGAAAACAA 59.252 50.000 27.56 0.00 0.00 2.83
432 1994 0.250727 CTTCAGAAAGGGCCCACGAA 60.251 55.000 27.56 16.73 0.00 3.85
434 1996 0.537371 AACTTCAGAAAGGGCCCACG 60.537 55.000 27.56 7.10 36.78 4.94
441 2003 6.799512 ACACAAAATCTCAACTTCAGAAAGG 58.200 36.000 0.00 0.00 36.78 3.11
445 2007 8.777413 CAGATAACACAAAATCTCAACTTCAGA 58.223 33.333 0.00 0.00 29.93 3.27
446 2008 7.536622 GCAGATAACACAAAATCTCAACTTCAG 59.463 37.037 0.00 0.00 29.93 3.02
451 2013 8.034058 AGTAGCAGATAACACAAAATCTCAAC 57.966 34.615 0.00 0.00 29.93 3.18
452 2014 7.877612 TGAGTAGCAGATAACACAAAATCTCAA 59.122 33.333 0.00 0.00 29.93 3.02
453 2015 7.386059 TGAGTAGCAGATAACACAAAATCTCA 58.614 34.615 0.00 0.00 29.93 3.27
454 2016 7.834068 TGAGTAGCAGATAACACAAAATCTC 57.166 36.000 0.00 0.00 29.93 2.75
455 2017 7.119846 GGTTGAGTAGCAGATAACACAAAATCT 59.880 37.037 0.00 0.00 32.63 2.40
456 2018 7.244192 GGTTGAGTAGCAGATAACACAAAATC 58.756 38.462 0.00 0.00 29.93 2.17
457 2019 6.151144 GGGTTGAGTAGCAGATAACACAAAAT 59.849 38.462 0.00 0.00 29.93 1.82
458 2020 5.472137 GGGTTGAGTAGCAGATAACACAAAA 59.528 40.000 0.00 0.00 29.93 2.44
459 2021 5.001232 GGGTTGAGTAGCAGATAACACAAA 58.999 41.667 0.00 0.00 29.93 2.83
460 2022 4.041075 TGGGTTGAGTAGCAGATAACACAA 59.959 41.667 0.00 0.00 32.29 3.33
461 2023 3.580895 TGGGTTGAGTAGCAGATAACACA 59.419 43.478 0.00 0.00 32.74 3.72
462 2024 3.933332 GTGGGTTGAGTAGCAGATAACAC 59.067 47.826 0.00 0.00 0.00 3.32
463 2025 3.580895 TGTGGGTTGAGTAGCAGATAACA 59.419 43.478 0.00 0.00 0.00 2.41
464 2026 4.202245 TGTGGGTTGAGTAGCAGATAAC 57.798 45.455 0.00 0.00 0.00 1.89
465 2027 4.225042 ACATGTGGGTTGAGTAGCAGATAA 59.775 41.667 0.00 0.00 0.00 1.75
486 2048 4.791411 GCGCAAGAAACTTTTCCACATACA 60.791 41.667 0.30 0.00 37.92 2.29
495 2057 0.459489 TGCCAGCGCAAGAAACTTTT 59.541 45.000 11.47 0.00 43.74 2.27
514 2076 9.701098 CCGTAACATAATATAGTACATGTGGTT 57.299 33.333 9.11 0.00 32.15 3.67
516 2078 9.701098 AACCGTAACATAATATAGTACATGTGG 57.299 33.333 9.11 0.00 32.15 4.17
529 2091 6.044046 TCAGCATACGAAACCGTAACATAAT 58.956 36.000 1.75 0.00 44.42 1.28
532 2094 3.852286 TCAGCATACGAAACCGTAACAT 58.148 40.909 1.75 0.00 44.42 2.71
542 2104 6.473131 GCAAAAATGAATCATCAGCATACGAA 59.527 34.615 0.00 0.00 39.39 3.85
550 2112 4.868171 CACCTGGCAAAAATGAATCATCAG 59.132 41.667 0.00 0.00 39.39 2.90
579 2141 1.446792 CATGAGTCTCGCGCAACCT 60.447 57.895 8.75 0.00 0.00 3.50
584 2146 0.512952 AAAACACATGAGTCTCGCGC 59.487 50.000 0.00 0.00 0.00 6.86
585 2147 2.949714 AAAAACACATGAGTCTCGCG 57.050 45.000 0.00 0.00 0.00 5.87
586 2148 5.502544 GCCTATAAAAACACATGAGTCTCGC 60.503 44.000 0.00 0.00 0.00 5.03
587 2149 5.812642 AGCCTATAAAAACACATGAGTCTCG 59.187 40.000 0.00 0.00 0.00 4.04
588 2150 6.037610 CCAGCCTATAAAAACACATGAGTCTC 59.962 42.308 0.00 0.00 0.00 3.36
589 2151 5.882557 CCAGCCTATAAAAACACATGAGTCT 59.117 40.000 0.00 0.00 0.00 3.24
594 2157 6.024552 ACAACCAGCCTATAAAAACACATG 57.975 37.500 0.00 0.00 0.00 3.21
612 2175 4.695217 TCTAAATCAATCGGCAACAACC 57.305 40.909 0.00 0.00 0.00 3.77
632 2195 3.701532 TTGACCGTGTCATTGGTTTTC 57.298 42.857 7.43 0.00 42.40 2.29
637 2200 3.913548 TGATTTTGACCGTGTCATTGG 57.086 42.857 7.43 0.00 42.40 3.16
638 2201 5.045668 TCATGATTTTGACCGTGTCATTG 57.954 39.130 7.43 1.65 42.40 2.82
640 2203 4.379813 GCTTCATGATTTTGACCGTGTCAT 60.380 41.667 0.00 0.00 42.40 3.06
643 2206 2.884012 TGCTTCATGATTTTGACCGTGT 59.116 40.909 0.00 0.00 0.00 4.49
645 2208 4.582701 TTTGCTTCATGATTTTGACCGT 57.417 36.364 0.00 0.00 0.00 4.83
646 2209 5.634439 TGAATTTGCTTCATGATTTTGACCG 59.366 36.000 0.00 0.00 38.97 4.79
668 2231 6.384258 TTTGATCGAGGTGTTCAATTTTGA 57.616 33.333 0.00 0.00 36.45 2.69
676 2239 6.024049 GTCAATGATTTTGATCGAGGTGTTC 58.976 40.000 0.00 0.00 0.00 3.18
682 2245 4.201753 ACTGCGTCAATGATTTTGATCGAG 60.202 41.667 11.60 9.22 0.00 4.04
685 2248 4.973396 TGACTGCGTCAATGATTTTGATC 58.027 39.130 8.59 0.00 39.78 2.92
701 2264 4.836125 TCAGGTTCAGAATTTTGACTGC 57.164 40.909 10.22 0.76 34.57 4.40
720 2283 5.414789 TTGAGGTGTTCGATTTAGGATCA 57.585 39.130 0.00 0.00 0.00 2.92
726 2289 9.004717 TGTTATTCAATTGAGGTGTTCGATTTA 57.995 29.630 8.41 0.00 37.74 1.40
731 2294 7.304735 TGATTGTTATTCAATTGAGGTGTTCG 58.695 34.615 8.41 0.00 45.49 3.95
830 2393 1.148310 CGCTCGTTCAATTGAGGTGT 58.852 50.000 8.41 0.00 32.78 4.16
832 2395 1.714794 CTCGCTCGTTCAATTGAGGT 58.285 50.000 8.41 0.00 32.78 3.85
848 2412 5.696724 CACTATGGACCCTAATTTTAGCTCG 59.303 44.000 0.00 0.00 0.00 5.03
861 2425 7.778185 ACTATCTACAATACACTATGGACCC 57.222 40.000 0.00 0.00 0.00 4.46
895 2470 6.778821 TCACAGGAGGAGAAATGTTAAATGA 58.221 36.000 0.00 0.00 0.00 2.57
918 2493 0.251634 CTGGAGGAGGAAGCCACTTC 59.748 60.000 0.00 0.00 39.52 3.01
1365 4448 8.627403 CAATCCTGCTTACATAAATTGATGACT 58.373 33.333 9.95 0.00 0.00 3.41
1462 4789 9.449719 ACTTTCACCAACAGGTTTATTAGATAG 57.550 33.333 0.00 0.00 31.84 2.08
1475 4805 7.275560 CCAAAGTAAAAGAACTTTCACCAACAG 59.724 37.037 0.21 0.00 45.59 3.16
1480 4810 6.750501 GTGACCAAAGTAAAAGAACTTTCACC 59.249 38.462 8.06 0.00 45.59 4.02
1483 4813 7.535997 ACAGTGACCAAAGTAAAAGAACTTTC 58.464 34.615 0.00 0.00 45.59 2.62
1508 4841 2.635714 TCGACCAACTGCTCGAGTATA 58.364 47.619 15.13 0.06 34.04 1.47
1510 4843 1.132453 CATCGACCAACTGCTCGAGTA 59.868 52.381 15.13 8.96 41.95 2.59
1511 4844 0.109086 CATCGACCAACTGCTCGAGT 60.109 55.000 15.13 0.00 41.95 4.18
1512 4845 0.803768 CCATCGACCAACTGCTCGAG 60.804 60.000 8.45 8.45 41.95 4.04
1513 4846 1.215382 CCATCGACCAACTGCTCGA 59.785 57.895 0.00 0.00 42.79 4.04
1514 4847 1.811266 CCCATCGACCAACTGCTCG 60.811 63.158 0.00 0.00 0.00 5.03
1515 4848 2.109126 GCCCATCGACCAACTGCTC 61.109 63.158 0.00 0.00 0.00 4.26
1516 4849 2.045926 GCCCATCGACCAACTGCT 60.046 61.111 0.00 0.00 0.00 4.24
1517 4850 2.359850 TGCCCATCGACCAACTGC 60.360 61.111 0.00 0.00 0.00 4.40
1518 4851 2.390599 CGTGCCCATCGACCAACTG 61.391 63.158 0.00 0.00 0.00 3.16
1519 4852 2.047274 CGTGCCCATCGACCAACT 60.047 61.111 0.00 0.00 0.00 3.16
1520 4853 2.358247 ACGTGCCCATCGACCAAC 60.358 61.111 0.00 0.00 0.00 3.77
1521 4854 2.047655 GACGTGCCCATCGACCAA 60.048 61.111 0.00 0.00 0.00 3.67
1522 4855 1.324005 TATGACGTGCCCATCGACCA 61.324 55.000 0.00 0.00 0.00 4.02
1523 4856 0.033504 ATATGACGTGCCCATCGACC 59.966 55.000 0.00 0.00 0.00 4.79
1524 4857 2.325761 GTATATGACGTGCCCATCGAC 58.674 52.381 0.00 0.00 0.00 4.20
1525 4858 1.271379 GGTATATGACGTGCCCATCGA 59.729 52.381 0.00 0.00 0.00 3.59
1526 4859 1.710013 GGTATATGACGTGCCCATCG 58.290 55.000 0.00 0.00 0.00 3.84
1527 4860 1.271379 TCGGTATATGACGTGCCCATC 59.729 52.381 0.00 0.00 0.00 3.51
1528 4861 1.334160 TCGGTATATGACGTGCCCAT 58.666 50.000 0.00 0.00 0.00 4.00
1529 4862 1.112950 TTCGGTATATGACGTGCCCA 58.887 50.000 0.00 0.00 0.00 5.36
1530 4863 2.450609 ATTCGGTATATGACGTGCCC 57.549 50.000 0.00 0.00 0.00 5.36
1531 4864 4.430137 TCTATTCGGTATATGACGTGCC 57.570 45.455 0.00 0.00 0.00 5.01
1532 4865 6.807230 AGATTTCTATTCGGTATATGACGTGC 59.193 38.462 0.00 0.00 0.00 5.34
1533 4866 7.201359 GCAGATTTCTATTCGGTATATGACGTG 60.201 40.741 0.00 0.00 0.00 4.49
1534 4867 6.807230 GCAGATTTCTATTCGGTATATGACGT 59.193 38.462 0.00 0.00 0.00 4.34
1535 4868 6.021390 CGCAGATTTCTATTCGGTATATGACG 60.021 42.308 0.00 0.00 0.00 4.35
1536 4869 6.807230 ACGCAGATTTCTATTCGGTATATGAC 59.193 38.462 0.00 0.00 0.00 3.06
1537 4870 6.920817 ACGCAGATTTCTATTCGGTATATGA 58.079 36.000 0.00 0.00 0.00 2.15
1538 4871 6.253727 GGACGCAGATTTCTATTCGGTATATG 59.746 42.308 0.00 0.00 0.00 1.78
1539 4872 6.331061 GGACGCAGATTTCTATTCGGTATAT 58.669 40.000 0.00 0.00 0.00 0.86
1540 4873 5.618418 CGGACGCAGATTTCTATTCGGTATA 60.618 44.000 0.00 0.00 0.00 1.47
1541 4874 4.557205 GGACGCAGATTTCTATTCGGTAT 58.443 43.478 0.00 0.00 0.00 2.73
1542 4875 3.549423 CGGACGCAGATTTCTATTCGGTA 60.549 47.826 0.00 0.00 0.00 4.02
1543 4876 2.798499 CGGACGCAGATTTCTATTCGGT 60.798 50.000 0.00 0.00 0.00 4.69
1544 4877 1.787155 CGGACGCAGATTTCTATTCGG 59.213 52.381 0.00 0.00 0.00 4.30
1545 4878 2.460918 ACGGACGCAGATTTCTATTCG 58.539 47.619 0.00 0.00 0.00 3.34
1546 4879 3.487574 CAGACGGACGCAGATTTCTATTC 59.512 47.826 0.00 0.00 0.00 1.75
1547 4880 3.448686 CAGACGGACGCAGATTTCTATT 58.551 45.455 0.00 0.00 0.00 1.73
1548 4881 2.799917 GCAGACGGACGCAGATTTCTAT 60.800 50.000 0.00 0.00 0.00 1.98
1554 4887 2.244117 AATGGCAGACGGACGCAGAT 62.244 55.000 0.00 0.00 0.00 2.90
1559 4892 1.127951 GTTGTTAATGGCAGACGGACG 59.872 52.381 0.00 0.00 0.00 4.79
1564 4897 4.923281 GGTTCATTGTTGTTAATGGCAGAC 59.077 41.667 0.00 0.00 38.33 3.51
1600 4933 9.638239 GCAGTTCCATTTATTCTTGTTAATGAA 57.362 29.630 0.00 0.00 31.29 2.57
1601 4934 8.250332 GGCAGTTCCATTTATTCTTGTTAATGA 58.750 33.333 0.00 0.00 31.29 2.57
1602 4935 8.253113 AGGCAGTTCCATTTATTCTTGTTAATG 58.747 33.333 0.00 0.00 37.29 1.90
1603 4936 8.366359 AGGCAGTTCCATTTATTCTTGTTAAT 57.634 30.769 0.00 0.00 37.29 1.40
1604 4937 7.775053 AGGCAGTTCCATTTATTCTTGTTAA 57.225 32.000 0.00 0.00 37.29 2.01
1605 4938 8.736244 GTTAGGCAGTTCCATTTATTCTTGTTA 58.264 33.333 0.00 0.00 37.29 2.41
1606 4939 7.309805 GGTTAGGCAGTTCCATTTATTCTTGTT 60.310 37.037 0.00 0.00 37.29 2.83
1607 4940 6.152831 GGTTAGGCAGTTCCATTTATTCTTGT 59.847 38.462 0.00 0.00 37.29 3.16
1608 4941 6.152661 TGGTTAGGCAGTTCCATTTATTCTTG 59.847 38.462 0.00 0.00 37.29 3.02
1609 4942 6.252995 TGGTTAGGCAGTTCCATTTATTCTT 58.747 36.000 0.00 0.00 37.29 2.52
1610 4943 5.826643 TGGTTAGGCAGTTCCATTTATTCT 58.173 37.500 0.00 0.00 37.29 2.40
1611 4944 6.715347 ATGGTTAGGCAGTTCCATTTATTC 57.285 37.500 0.00 0.00 37.38 1.75
1612 4945 6.440328 ACAATGGTTAGGCAGTTCCATTTATT 59.560 34.615 11.05 0.44 44.88 1.40
1613 4946 5.957774 ACAATGGTTAGGCAGTTCCATTTAT 59.042 36.000 11.05 3.20 44.88 1.40
1614 4947 5.184864 CACAATGGTTAGGCAGTTCCATTTA 59.815 40.000 11.05 0.00 44.88 1.40
1615 4948 4.021192 CACAATGGTTAGGCAGTTCCATTT 60.021 41.667 11.05 3.76 44.88 2.32
1617 4950 3.091545 CACAATGGTTAGGCAGTTCCAT 58.908 45.455 0.00 0.00 41.68 3.41
1618 4951 2.158534 ACACAATGGTTAGGCAGTTCCA 60.159 45.455 0.00 0.00 37.29 3.53
1619 4952 2.488153 GACACAATGGTTAGGCAGTTCC 59.512 50.000 0.00 0.00 0.00 3.62
1620 4953 3.189287 CAGACACAATGGTTAGGCAGTTC 59.811 47.826 0.00 0.00 0.00 3.01
1621 4954 3.149196 CAGACACAATGGTTAGGCAGTT 58.851 45.455 0.00 0.00 0.00 3.16
1622 4955 2.371841 TCAGACACAATGGTTAGGCAGT 59.628 45.455 0.00 0.00 0.00 4.40
1623 4956 3.057969 TCAGACACAATGGTTAGGCAG 57.942 47.619 0.00 0.00 0.00 4.85
1624 4957 3.719268 ATCAGACACAATGGTTAGGCA 57.281 42.857 0.00 0.00 0.00 4.75
1625 4958 3.063997 CGAATCAGACACAATGGTTAGGC 59.936 47.826 0.00 0.00 0.00 3.93
1626 4959 4.503910 TCGAATCAGACACAATGGTTAGG 58.496 43.478 0.00 0.00 0.00 2.69
1627 4960 7.706607 TCTTATCGAATCAGACACAATGGTTAG 59.293 37.037 0.00 0.00 0.00 2.34
1628 4961 7.552459 TCTTATCGAATCAGACACAATGGTTA 58.448 34.615 0.00 0.00 0.00 2.85
1629 4962 6.406370 TCTTATCGAATCAGACACAATGGTT 58.594 36.000 0.00 0.00 0.00 3.67
1630 4963 5.977635 TCTTATCGAATCAGACACAATGGT 58.022 37.500 0.00 0.00 0.00 3.55
1631 4964 6.703165 TCATCTTATCGAATCAGACACAATGG 59.297 38.462 0.00 0.00 0.00 3.16
1632 4965 7.704789 TCATCTTATCGAATCAGACACAATG 57.295 36.000 0.00 0.00 0.00 2.82
1633 4966 8.899427 ATTCATCTTATCGAATCAGACACAAT 57.101 30.769 0.00 0.00 0.00 2.71
1634 4967 9.468532 CTATTCATCTTATCGAATCAGACACAA 57.531 33.333 0.00 0.00 33.90 3.33
1635 4968 8.850156 TCTATTCATCTTATCGAATCAGACACA 58.150 33.333 0.00 0.00 33.90 3.72
1636 4969 9.684448 TTCTATTCATCTTATCGAATCAGACAC 57.316 33.333 0.00 0.00 33.90 3.67
1637 4970 9.684448 GTTCTATTCATCTTATCGAATCAGACA 57.316 33.333 0.00 0.00 33.90 3.41
1638 4971 9.134734 GGTTCTATTCATCTTATCGAATCAGAC 57.865 37.037 0.00 0.00 33.90 3.51
1639 4972 9.083422 AGGTTCTATTCATCTTATCGAATCAGA 57.917 33.333 0.00 0.00 33.90 3.27
1640 4973 9.703892 AAGGTTCTATTCATCTTATCGAATCAG 57.296 33.333 0.00 0.00 33.90 2.90
1641 4974 9.481340 CAAGGTTCTATTCATCTTATCGAATCA 57.519 33.333 0.00 0.00 33.90 2.57
1642 4975 9.698309 TCAAGGTTCTATTCATCTTATCGAATC 57.302 33.333 0.00 0.00 33.90 2.52
1643 4976 9.482627 GTCAAGGTTCTATTCATCTTATCGAAT 57.517 33.333 0.00 0.00 35.97 3.34
1644 4977 7.926555 GGTCAAGGTTCTATTCATCTTATCGAA 59.073 37.037 0.00 0.00 0.00 3.71
1645 4978 7.069455 TGGTCAAGGTTCTATTCATCTTATCGA 59.931 37.037 0.00 0.00 0.00 3.59
1646 4979 7.169982 GTGGTCAAGGTTCTATTCATCTTATCG 59.830 40.741 0.00 0.00 0.00 2.92
1647 4980 7.987458 TGTGGTCAAGGTTCTATTCATCTTATC 59.013 37.037 0.00 0.00 0.00 1.75
1648 4981 7.861629 TGTGGTCAAGGTTCTATTCATCTTAT 58.138 34.615 0.00 0.00 0.00 1.73
1649 4982 7.252612 TGTGGTCAAGGTTCTATTCATCTTA 57.747 36.000 0.00 0.00 0.00 2.10
1650 4983 6.126863 TGTGGTCAAGGTTCTATTCATCTT 57.873 37.500 0.00 0.00 0.00 2.40
1651 4984 5.762179 TGTGGTCAAGGTTCTATTCATCT 57.238 39.130 0.00 0.00 0.00 2.90
1652 4985 8.506168 TTAATGTGGTCAAGGTTCTATTCATC 57.494 34.615 0.00 0.00 0.00 2.92
1653 4986 8.109634 ACTTAATGTGGTCAAGGTTCTATTCAT 58.890 33.333 0.00 0.00 0.00 2.57
1654 4987 7.458397 ACTTAATGTGGTCAAGGTTCTATTCA 58.542 34.615 0.00 0.00 0.00 2.57
1655 4988 7.606456 TGACTTAATGTGGTCAAGGTTCTATTC 59.394 37.037 0.00 0.00 39.16 1.75
1656 4989 7.458397 TGACTTAATGTGGTCAAGGTTCTATT 58.542 34.615 0.00 0.00 39.16 1.73
1657 4990 7.016153 TGACTTAATGTGGTCAAGGTTCTAT 57.984 36.000 0.00 0.00 39.16 1.98
1658 4991 6.269077 TCTGACTTAATGTGGTCAAGGTTCTA 59.731 38.462 0.00 0.00 41.13 2.10
1659 4992 5.071788 TCTGACTTAATGTGGTCAAGGTTCT 59.928 40.000 0.00 0.00 41.13 3.01
1660 4993 5.305585 TCTGACTTAATGTGGTCAAGGTTC 58.694 41.667 0.00 0.00 41.13 3.62
1661 4994 5.304686 TCTGACTTAATGTGGTCAAGGTT 57.695 39.130 0.00 0.00 41.13 3.50
1662 4995 4.974645 TCTGACTTAATGTGGTCAAGGT 57.025 40.909 0.00 0.00 41.13 3.50
1663 4996 6.615088 CAAATCTGACTTAATGTGGTCAAGG 58.385 40.000 0.00 0.00 41.13 3.61
1664 4997 6.072286 AGCAAATCTGACTTAATGTGGTCAAG 60.072 38.462 0.00 0.00 41.13 3.02
1665 4998 5.769662 AGCAAATCTGACTTAATGTGGTCAA 59.230 36.000 0.00 0.00 41.13 3.18
1666 4999 5.316167 AGCAAATCTGACTTAATGTGGTCA 58.684 37.500 0.00 0.00 39.71 4.02
1667 5000 5.886960 AGCAAATCTGACTTAATGTGGTC 57.113 39.130 0.00 0.00 0.00 4.02
1668 5001 7.201644 CGATTAGCAAATCTGACTTAATGTGGT 60.202 37.037 0.00 0.00 39.56 4.16
1669 5002 7.011389 TCGATTAGCAAATCTGACTTAATGTGG 59.989 37.037 0.00 0.00 39.56 4.17
1670 5003 7.848051 GTCGATTAGCAAATCTGACTTAATGTG 59.152 37.037 0.00 0.00 39.65 3.21
1671 5004 7.254117 CGTCGATTAGCAAATCTGACTTAATGT 60.254 37.037 14.77 0.00 40.07 2.71
1672 5005 7.059817 CGTCGATTAGCAAATCTGACTTAATG 58.940 38.462 14.77 0.00 40.07 1.90
1673 5006 6.292381 GCGTCGATTAGCAAATCTGACTTAAT 60.292 38.462 0.00 0.00 40.07 1.40
1674 5007 5.005394 GCGTCGATTAGCAAATCTGACTTAA 59.995 40.000 0.00 0.00 40.07 1.85
1675 5008 4.503007 GCGTCGATTAGCAAATCTGACTTA 59.497 41.667 0.00 0.00 40.07 2.24
1676 5009 3.307242 GCGTCGATTAGCAAATCTGACTT 59.693 43.478 0.00 0.00 40.07 3.01
1677 5010 2.860735 GCGTCGATTAGCAAATCTGACT 59.139 45.455 0.00 0.00 40.07 3.41
1678 5011 2.603110 TGCGTCGATTAGCAAATCTGAC 59.397 45.455 10.08 10.38 40.78 3.51
1679 5012 2.887337 TGCGTCGATTAGCAAATCTGA 58.113 42.857 10.08 0.00 40.78 3.27
1687 5020 1.927174 ACAGAACATGCGTCGATTAGC 59.073 47.619 0.00 0.00 0.00 3.09
1688 5021 2.535984 GGACAGAACATGCGTCGATTAG 59.464 50.000 0.00 0.00 0.00 1.73
1689 5022 2.094442 TGGACAGAACATGCGTCGATTA 60.094 45.455 0.00 0.00 0.00 1.75
1690 5023 1.337728 TGGACAGAACATGCGTCGATT 60.338 47.619 0.00 0.00 0.00 3.34
1691 5024 0.246360 TGGACAGAACATGCGTCGAT 59.754 50.000 0.00 0.00 0.00 3.59
1692 5025 0.388520 CTGGACAGAACATGCGTCGA 60.389 55.000 0.00 0.00 0.00 4.20
1693 5026 0.388520 TCTGGACAGAACATGCGTCG 60.389 55.000 0.00 0.00 33.91 5.12
1694 5027 2.015736 ATCTGGACAGAACATGCGTC 57.984 50.000 6.06 0.00 41.36 5.19
1695 5028 2.479566 AATCTGGACAGAACATGCGT 57.520 45.000 6.06 0.00 41.36 5.24
1696 5029 4.375272 AGATAATCTGGACAGAACATGCG 58.625 43.478 6.06 0.00 41.36 4.73
1697 5030 5.363101 TGAGATAATCTGGACAGAACATGC 58.637 41.667 6.06 0.00 41.36 4.06
1698 5031 6.580788 ACTGAGATAATCTGGACAGAACATG 58.419 40.000 6.06 0.00 41.36 3.21
1699 5032 6.805016 ACTGAGATAATCTGGACAGAACAT 57.195 37.500 6.06 2.75 41.36 2.71
1700 5033 7.685398 GCATACTGAGATAATCTGGACAGAACA 60.685 40.741 6.06 0.00 41.36 3.18
1701 5034 6.644592 GCATACTGAGATAATCTGGACAGAAC 59.355 42.308 6.06 0.00 41.36 3.01
1702 5035 6.552725 AGCATACTGAGATAATCTGGACAGAA 59.447 38.462 6.06 0.00 41.36 3.02
1703 5036 6.073981 AGCATACTGAGATAATCTGGACAGA 58.926 40.000 4.26 4.26 42.37 3.41
1704 5037 6.343716 AGCATACTGAGATAATCTGGACAG 57.656 41.667 0.00 0.00 0.00 3.51
1705 5038 5.244851 GGAGCATACTGAGATAATCTGGACA 59.755 44.000 0.00 0.00 0.00 4.02
1706 5039 5.480073 AGGAGCATACTGAGATAATCTGGAC 59.520 44.000 0.00 0.00 0.00 4.02
1707 5040 5.649265 AGGAGCATACTGAGATAATCTGGA 58.351 41.667 0.00 0.00 0.00 3.86
1708 5041 5.999205 AGGAGCATACTGAGATAATCTGG 57.001 43.478 0.00 0.00 0.00 3.86
1709 5042 7.440198 TCAAAGGAGCATACTGAGATAATCTG 58.560 38.462 0.00 0.00 0.00 2.90
1710 5043 7.609097 TCAAAGGAGCATACTGAGATAATCT 57.391 36.000 0.00 0.00 0.00 2.40
1711 5044 7.887996 CTCAAAGGAGCATACTGAGATAATC 57.112 40.000 0.00 0.00 36.44 1.75
1726 5059 1.001406 AGAGGAACGTGCTCAAAGGAG 59.999 52.381 0.00 0.00 44.33 3.69
1727 5060 1.048601 AGAGGAACGTGCTCAAAGGA 58.951 50.000 0.00 0.00 37.29 3.36
1728 5061 1.151668 CAGAGGAACGTGCTCAAAGG 58.848 55.000 0.00 0.00 37.29 3.11
1729 5062 0.514691 GCAGAGGAACGTGCTCAAAG 59.485 55.000 0.00 0.00 37.29 2.77
1730 5063 0.884704 GGCAGAGGAACGTGCTCAAA 60.885 55.000 0.00 0.00 37.29 2.69
1731 5064 1.301716 GGCAGAGGAACGTGCTCAA 60.302 57.895 0.00 0.00 37.29 3.02
1740 5073 0.247736 GAAGAAGCGAGGCAGAGGAA 59.752 55.000 0.00 0.00 0.00 3.36
1741 5074 0.613292 AGAAGAAGCGAGGCAGAGGA 60.613 55.000 0.00 0.00 0.00 3.71
1746 5079 0.244994 GTCAGAGAAGAAGCGAGGCA 59.755 55.000 0.00 0.00 0.00 4.75
1780 5113 1.817520 CCATTATGTGCACGGCCGA 60.818 57.895 35.90 9.64 0.00 5.54
1866 5237 0.525242 CTCGCTCTGCTCTGCTGTAC 60.525 60.000 0.00 0.00 0.00 2.90
1868 5239 2.572812 CTCGCTCTGCTCTGCTGT 59.427 61.111 0.00 0.00 0.00 4.40
1943 5329 2.047179 GTGAGGGCACGGAGGAAC 60.047 66.667 0.00 0.00 34.94 3.62
1974 5360 2.906897 CGTGGCCTGTGGTGCTTT 60.907 61.111 3.32 0.00 0.00 3.51
2006 5392 0.394216 TCAAGGATGTCCATTGGCGG 60.394 55.000 0.00 0.00 38.89 6.13
2016 5402 1.504275 AAGGCTGGGCTCAAGGATGT 61.504 55.000 0.00 0.00 0.00 3.06
2039 5425 2.023501 TGGGGAAATGTAAGAATGGGGG 60.024 50.000 0.00 0.00 0.00 5.40
2044 5430 4.162131 GGCAATGTGGGGAAATGTAAGAAT 59.838 41.667 0.00 0.00 0.00 2.40
2082 5473 3.261951 CTGCCGGCGTCCGTAATG 61.262 66.667 23.90 0.00 46.80 1.90
2104 5496 4.410400 GGAAGGTGGACGGCCTGG 62.410 72.222 9.82 0.00 36.30 4.45
2109 5501 2.347490 CTGGTGGAAGGTGGACGG 59.653 66.667 0.00 0.00 0.00 4.79
2122 5514 2.029073 CGAGGTGCGTTCACTGGT 59.971 61.111 0.00 0.00 42.72 4.00
2123 5515 3.414700 GCGAGGTGCGTTCACTGG 61.415 66.667 0.00 0.00 42.72 4.00
2262 5655 2.257676 GGAACTCGGCGAGAACGT 59.742 61.111 40.35 22.56 41.98 3.99
2263 5656 2.087009 GTGGAACTCGGCGAGAACG 61.087 63.158 40.35 17.96 42.93 3.95
2277 5670 1.085091 GAGCGTAGAGAGAACGTGGA 58.915 55.000 0.00 0.00 42.26 4.02
2280 5673 0.720590 GTCGAGCGTAGAGAGAACGT 59.279 55.000 0.00 0.00 42.26 3.99
2290 5683 1.514087 GAATGGGTGGTCGAGCGTA 59.486 57.895 10.46 0.00 0.00 4.42
2291 5684 2.264794 GAATGGGTGGTCGAGCGT 59.735 61.111 10.46 0.00 0.00 5.07
2336 5729 0.520827 CGTAGCGTCAGTCTTCGTCC 60.521 60.000 0.00 0.00 0.00 4.79
2374 5772 2.100418 GGGACCGTAGTACATGGAGAAC 59.900 54.545 9.65 0.00 36.71 3.01
2384 5782 1.077501 CACCTCCGGGACCGTAGTA 60.078 63.158 10.17 0.00 37.81 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.