Multiple sequence alignment - TraesCS2D01G062100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G062100 chr2D 100.000 3712 0 0 1 3712 26350137 26353848 0.000000e+00 6855.0
1 TraesCS2D01G062100 chr2D 82.129 761 121 12 1941 2697 11296954 11297703 4.040000e-179 638.0
2 TraesCS2D01G062100 chr2D 87.452 518 54 6 965 1480 11218847 11219355 1.490000e-163 586.0
3 TraesCS2D01G062100 chr2D 84.262 610 69 15 2205 2799 11129008 11129605 1.500000e-158 569.0
4 TraesCS2D01G062100 chr2D 83.365 523 67 8 999 1507 11228706 11229222 2.020000e-127 466.0
5 TraesCS2D01G062100 chr2D 83.411 428 57 6 995 1408 14389990 14390417 5.820000e-103 385.0
6 TraesCS2D01G062100 chr2D 84.566 311 35 9 2998 3308 11166341 11166638 2.800000e-76 296.0
7 TraesCS2D01G062100 chr2D 85.390 308 20 10 3234 3534 11297732 11298021 2.800000e-76 296.0
8 TraesCS2D01G062100 chr2D 84.262 305 32 12 3004 3308 11130300 11130588 2.180000e-72 283.0
9 TraesCS2D01G062100 chr2D 74.924 658 119 31 1645 2265 14390817 14391465 3.680000e-65 259.0
10 TraesCS2D01G062100 chr2D 88.830 188 19 1 2708 2893 11181851 11182038 2.880000e-56 230.0
11 TraesCS2D01G062100 chr2D 85.542 166 7 3 3564 3712 11298021 11298186 1.380000e-34 158.0
12 TraesCS2D01G062100 chr2D 87.597 129 8 1 2755 2883 11166152 11166272 3.860000e-30 143.0
13 TraesCS2D01G062100 chr2B 84.054 1342 146 34 1946 3236 17079654 17080978 0.000000e+00 1230.0
14 TraesCS2D01G062100 chr2B 84.366 1081 97 41 449 1503 17239959 17238925 0.000000e+00 994.0
15 TraesCS2D01G062100 chr2B 90.729 658 52 2 1994 2642 17465782 17466439 0.000000e+00 869.0
16 TraesCS2D01G062100 chr2B 84.879 701 77 15 2199 2883 17204925 17204238 0.000000e+00 680.0
17 TraesCS2D01G062100 chr2B 84.714 700 77 15 2199 2883 16967544 16968228 0.000000e+00 673.0
18 TraesCS2D01G062100 chr2B 85.089 503 57 11 967 1462 17077631 17078122 7.160000e-137 497.0
19 TraesCS2D01G062100 chr2B 87.269 432 49 3 1529 1959 17465360 17465786 4.310000e-134 488.0
20 TraesCS2D01G062100 chr2B 85.169 445 60 3 998 1436 26175423 26175867 5.650000e-123 451.0
21 TraesCS2D01G062100 chr2B 90.435 230 16 3 2646 2870 17467086 17467314 7.790000e-77 298.0
22 TraesCS2D01G062100 chr2B 83.654 312 35 11 2998 3308 17204169 17203873 2.820000e-71 279.0
23 TraesCS2D01G062100 chr2B 85.326 184 25 2 2 183 734493587 734493404 4.890000e-44 189.0
24 TraesCS2D01G062100 chr2B 79.920 249 47 1 1951 2199 26216217 26216462 2.950000e-41 180.0
25 TraesCS2D01G062100 chr2B 84.242 165 17 7 2708 2868 17065304 17065463 6.420000e-33 152.0
26 TraesCS2D01G062100 chr2B 81.595 163 9 13 346 489 17240119 17239959 8.420000e-22 115.0
27 TraesCS2D01G062100 chr2A 96.886 546 17 0 2225 2770 28665412 28665957 0.000000e+00 915.0
28 TraesCS2D01G062100 chr2A 95.030 503 23 2 3005 3507 28674118 28674618 0.000000e+00 789.0
29 TraesCS2D01G062100 chr2A 84.436 514 53 16 996 1503 11871167 11870675 7.210000e-132 481.0
30 TraesCS2D01G062100 chr2A 79.094 684 133 10 1957 2635 11835223 11834545 2.610000e-126 462.0
31 TraesCS2D01G062100 chr2A 96.330 218 7 1 2764 2981 28666837 28667053 1.270000e-94 357.0
32 TraesCS2D01G062100 chr2A 97.248 109 3 0 3602 3710 28674663 28674771 6.330000e-43 185.0
33 TraesCS2D01G062100 chr2A 87.500 144 18 0 2711 2854 11803335 11803192 2.290000e-37 167.0
34 TraesCS2D01G062100 chr2A 98.148 54 1 0 2964 3017 28672743 28672796 1.100000e-15 95.3
35 TraesCS2D01G062100 chr2A 98.000 50 1 0 3528 3577 28674615 28674664 1.840000e-13 87.9
36 TraesCS2D01G062100 chrUn 87.253 659 81 2 1945 2603 445003944 445003289 0.000000e+00 749.0
37 TraesCS2D01G062100 chrUn 85.549 692 65 12 2205 2883 12502067 12502736 0.000000e+00 691.0
38 TraesCS2D01G062100 chrUn 85.507 690 65 12 2205 2881 342144849 342145516 0.000000e+00 688.0
39 TraesCS2D01G062100 chrUn 86.231 581 77 2 1945 2525 378050844 378050267 8.750000e-176 627.0
40 TraesCS2D01G062100 chrUn 88.506 261 28 2 1202 1461 376171341 376171082 7.740000e-82 315.0
41 TraesCS2D01G062100 chrUn 88.506 261 28 2 1202 1461 378051909 378051650 7.740000e-82 315.0
42 TraesCS2D01G062100 chrUn 87.500 112 13 1 3083 3193 12520841 12520952 1.080000e-25 128.0
43 TraesCS2D01G062100 chr3D 94.709 378 19 1 2962 3338 478537076 478537453 1.490000e-163 586.0
44 TraesCS2D01G062100 chr3D 92.308 403 11 6 3322 3712 478537491 478537885 4.190000e-154 555.0
45 TraesCS2D01G062100 chr5D 87.634 186 17 6 2 183 434423926 434423743 1.040000e-50 211.0
46 TraesCS2D01G062100 chr5D 85.870 184 25 1 1 183 324352610 324352427 1.050000e-45 195.0
47 TraesCS2D01G062100 chr1B 85.405 185 25 2 1 183 673164973 673165157 1.360000e-44 191.0
48 TraesCS2D01G062100 chr1B 85.246 183 25 2 1 181 55538694 55538512 1.760000e-43 187.0
49 TraesCS2D01G062100 chr6B 85.326 184 25 2 2 183 16409860 16410043 4.890000e-44 189.0
50 TraesCS2D01G062100 chr6B 84.865 185 26 2 1 183 75984883 75984699 6.330000e-43 185.0
51 TraesCS2D01G062100 chr5B 85.326 184 25 2 2 183 326997727 326997910 4.890000e-44 189.0
52 TraesCS2D01G062100 chr5B 85.405 185 23 4 2 183 612327291 612327108 4.890000e-44 189.0
53 TraesCS2D01G062100 chr4D 81.356 118 15 3 181 292 80885360 80885476 5.110000e-14 89.8
54 TraesCS2D01G062100 chr1D 78.832 137 22 2 180 309 16278495 16278359 6.610000e-13 86.1
55 TraesCS2D01G062100 chr4B 82.609 92 10 6 181 268 574069366 574069277 3.980000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G062100 chr2D 26350137 26353848 3711 False 6855.000000 6855 100.000000 1 3712 1 chr2D.!!$F4 3711
1 TraesCS2D01G062100 chr2D 11218847 11219355 508 False 586.000000 586 87.452000 965 1480 1 chr2D.!!$F2 515
2 TraesCS2D01G062100 chr2D 11228706 11229222 516 False 466.000000 466 83.365000 999 1507 1 chr2D.!!$F3 508
3 TraesCS2D01G062100 chr2D 11129008 11130588 1580 False 426.000000 569 84.262000 2205 3308 2 chr2D.!!$F5 1103
4 TraesCS2D01G062100 chr2D 11296954 11298186 1232 False 364.000000 638 84.353667 1941 3712 3 chr2D.!!$F7 1771
5 TraesCS2D01G062100 chr2D 14389990 14391465 1475 False 322.000000 385 79.167500 995 2265 2 chr2D.!!$F8 1270
6 TraesCS2D01G062100 chr2B 17077631 17080978 3347 False 863.500000 1230 84.571500 967 3236 2 chr2B.!!$F5 2269
7 TraesCS2D01G062100 chr2B 16967544 16968228 684 False 673.000000 673 84.714000 2199 2883 1 chr2B.!!$F1 684
8 TraesCS2D01G062100 chr2B 17238925 17240119 1194 True 554.500000 994 82.980500 346 1503 2 chr2B.!!$R3 1157
9 TraesCS2D01G062100 chr2B 17465360 17467314 1954 False 551.666667 869 89.477667 1529 2870 3 chr2B.!!$F6 1341
10 TraesCS2D01G062100 chr2B 17203873 17204925 1052 True 479.500000 680 84.266500 2199 3308 2 chr2B.!!$R2 1109
11 TraesCS2D01G062100 chr2A 28665412 28667053 1641 False 636.000000 915 96.608000 2225 2981 2 chr2A.!!$F1 756
12 TraesCS2D01G062100 chr2A 11834545 11835223 678 True 462.000000 462 79.094000 1957 2635 1 chr2A.!!$R2 678
13 TraesCS2D01G062100 chr2A 28672743 28674771 2028 False 289.300000 789 97.106500 2964 3710 4 chr2A.!!$F2 746
14 TraesCS2D01G062100 chrUn 445003289 445003944 655 True 749.000000 749 87.253000 1945 2603 1 chrUn.!!$R2 658
15 TraesCS2D01G062100 chrUn 12502067 12502736 669 False 691.000000 691 85.549000 2205 2883 1 chrUn.!!$F1 678
16 TraesCS2D01G062100 chrUn 342144849 342145516 667 False 688.000000 688 85.507000 2205 2881 1 chrUn.!!$F3 676
17 TraesCS2D01G062100 chrUn 378050267 378051909 1642 True 471.000000 627 87.368500 1202 2525 2 chrUn.!!$R3 1323
18 TraesCS2D01G062100 chr3D 478537076 478537885 809 False 570.500000 586 93.508500 2962 3712 2 chr3D.!!$F1 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
895 980 0.09820 CAACATCTGATGGCTGCGTG 59.902 55.0 20.83 6.09 33.6 5.34 F
1516 1649 0.17668 AATTGATCGCTCGACCTGCT 59.823 50.0 0.00 0.00 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 3363 0.255890 CCCCTGTACACCCTTCCATG 59.744 60.0 0.00 0.0 0.0 3.66 R
2903 6773 1.167851 ATGTGATTGACGGCCACTTG 58.832 50.0 2.24 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 9.777297 AAAATTGGGTGGTATATAATTTGATGC 57.223 29.630 0.00 0.00 32.92 3.91
59 60 6.567687 TTGGGTGGTATATAATTTGATGCG 57.432 37.500 0.00 0.00 0.00 4.73
60 61 5.626142 TGGGTGGTATATAATTTGATGCGT 58.374 37.500 0.00 0.00 0.00 5.24
61 62 5.471797 TGGGTGGTATATAATTTGATGCGTG 59.528 40.000 0.00 0.00 0.00 5.34
62 63 5.703592 GGGTGGTATATAATTTGATGCGTGA 59.296 40.000 0.00 0.00 0.00 4.35
63 64 6.128282 GGGTGGTATATAATTTGATGCGTGAG 60.128 42.308 0.00 0.00 0.00 3.51
64 65 6.128282 GGTGGTATATAATTTGATGCGTGAGG 60.128 42.308 0.00 0.00 0.00 3.86
65 66 6.426937 GTGGTATATAATTTGATGCGTGAGGT 59.573 38.462 0.00 0.00 0.00 3.85
66 67 6.649141 TGGTATATAATTTGATGCGTGAGGTC 59.351 38.462 0.00 0.00 0.00 3.85
67 68 6.092259 GGTATATAATTTGATGCGTGAGGTCC 59.908 42.308 0.00 0.00 0.00 4.46
68 69 2.496899 AATTTGATGCGTGAGGTCCT 57.503 45.000 0.00 0.00 0.00 3.85
69 70 2.029838 ATTTGATGCGTGAGGTCCTC 57.970 50.000 12.40 12.40 0.00 3.71
70 71 0.976641 TTTGATGCGTGAGGTCCTCT 59.023 50.000 19.82 0.00 0.00 3.69
71 72 0.532573 TTGATGCGTGAGGTCCTCTC 59.467 55.000 19.82 14.99 42.74 3.20
72 73 1.323271 TGATGCGTGAGGTCCTCTCC 61.323 60.000 19.82 9.39 41.76 3.71
73 74 1.305297 ATGCGTGAGGTCCTCTCCA 60.305 57.895 19.82 15.17 41.76 3.86
74 75 0.904865 ATGCGTGAGGTCCTCTCCAA 60.905 55.000 19.82 6.57 41.76 3.53
75 76 0.904865 TGCGTGAGGTCCTCTCCAAT 60.905 55.000 19.82 0.00 41.76 3.16
76 77 0.250513 GCGTGAGGTCCTCTCCAATT 59.749 55.000 19.82 0.00 41.76 2.32
77 78 1.339151 GCGTGAGGTCCTCTCCAATTT 60.339 52.381 19.82 0.00 41.76 1.82
78 79 2.876079 GCGTGAGGTCCTCTCCAATTTT 60.876 50.000 19.82 0.00 41.76 1.82
79 80 3.412386 CGTGAGGTCCTCTCCAATTTTT 58.588 45.455 19.82 0.00 41.76 1.94
80 81 3.189287 CGTGAGGTCCTCTCCAATTTTTG 59.811 47.826 19.82 0.00 41.76 2.44
81 82 4.398319 GTGAGGTCCTCTCCAATTTTTGA 58.602 43.478 19.82 0.00 41.76 2.69
82 83 4.827284 GTGAGGTCCTCTCCAATTTTTGAA 59.173 41.667 19.82 0.00 41.76 2.69
83 84 5.478332 GTGAGGTCCTCTCCAATTTTTGAAT 59.522 40.000 19.82 0.00 41.76 2.57
84 85 5.711976 TGAGGTCCTCTCCAATTTTTGAATC 59.288 40.000 19.82 0.00 41.76 2.52
85 86 4.702131 AGGTCCTCTCCAATTTTTGAATCG 59.298 41.667 0.00 0.00 0.00 3.34
86 87 4.459337 GGTCCTCTCCAATTTTTGAATCGT 59.541 41.667 0.00 0.00 0.00 3.73
87 88 5.048013 GGTCCTCTCCAATTTTTGAATCGTT 60.048 40.000 0.00 0.00 0.00 3.85
88 89 6.447162 GTCCTCTCCAATTTTTGAATCGTTT 58.553 36.000 0.00 0.00 0.00 3.60
89 90 6.363357 GTCCTCTCCAATTTTTGAATCGTTTG 59.637 38.462 0.00 0.00 0.00 2.93
90 91 5.634859 CCTCTCCAATTTTTGAATCGTTTGG 59.365 40.000 0.00 0.00 35.93 3.28
91 92 6.398234 TCTCCAATTTTTGAATCGTTTGGA 57.602 33.333 0.00 0.00 40.08 3.53
92 93 6.212955 TCTCCAATTTTTGAATCGTTTGGAC 58.787 36.000 0.00 0.00 38.10 4.02
93 94 6.040391 TCTCCAATTTTTGAATCGTTTGGACT 59.960 34.615 0.00 0.00 38.10 3.85
94 95 6.578023 TCCAATTTTTGAATCGTTTGGACTT 58.422 32.000 0.00 0.00 38.10 3.01
95 96 6.699642 TCCAATTTTTGAATCGTTTGGACTTC 59.300 34.615 0.00 0.00 38.10 3.01
96 97 6.701400 CCAATTTTTGAATCGTTTGGACTTCT 59.299 34.615 0.00 0.00 36.55 2.85
97 98 7.306749 CCAATTTTTGAATCGTTTGGACTTCTG 60.307 37.037 0.00 0.00 36.55 3.02
98 99 6.443934 TTTTTGAATCGTTTGGACTTCTGA 57.556 33.333 0.00 0.00 0.00 3.27
99 100 5.673337 TTTGAATCGTTTGGACTTCTGAG 57.327 39.130 0.00 0.00 0.00 3.35
100 101 3.067106 TGAATCGTTTGGACTTCTGAGC 58.933 45.455 0.00 0.00 0.00 4.26
101 102 2.839486 ATCGTTTGGACTTCTGAGCA 57.161 45.000 0.00 0.00 0.00 4.26
102 103 2.154854 TCGTTTGGACTTCTGAGCAG 57.845 50.000 0.00 0.00 0.00 4.24
103 104 0.514691 CGTTTGGACTTCTGAGCAGC 59.485 55.000 0.00 0.00 0.00 5.25
104 105 1.875576 CGTTTGGACTTCTGAGCAGCT 60.876 52.381 0.00 0.00 0.00 4.24
105 106 1.803555 GTTTGGACTTCTGAGCAGCTC 59.196 52.381 16.21 16.21 0.00 4.09
106 107 1.346062 TTGGACTTCTGAGCAGCTCT 58.654 50.000 23.15 2.04 0.00 4.09
107 108 0.894141 TGGACTTCTGAGCAGCTCTC 59.106 55.000 23.15 11.57 42.23 3.20
108 109 0.179140 GGACTTCTGAGCAGCTCTCG 60.179 60.000 23.15 13.93 44.86 4.04
110 111 1.519013 CTTCTGAGCAGCTCTCGGC 60.519 63.158 23.15 0.00 45.76 5.54
111 112 2.223200 CTTCTGAGCAGCTCTCGGCA 62.223 60.000 23.15 2.15 45.76 5.69
112 113 1.820010 TTCTGAGCAGCTCTCGGCAA 61.820 55.000 23.15 6.06 45.76 4.52
113 114 1.375140 CTGAGCAGCTCTCGGCAAA 60.375 57.895 23.15 0.00 44.86 3.68
114 115 0.952497 CTGAGCAGCTCTCGGCAAAA 60.952 55.000 23.15 0.00 44.86 2.44
115 116 0.534877 TGAGCAGCTCTCGGCAAAAA 60.535 50.000 23.15 0.00 44.86 1.94
137 138 7.775397 AAAAGACAAATGGATCAAAACAGTG 57.225 32.000 0.00 0.00 0.00 3.66
138 139 4.874970 AGACAAATGGATCAAAACAGTGC 58.125 39.130 0.00 0.00 0.00 4.40
139 140 4.341806 AGACAAATGGATCAAAACAGTGCA 59.658 37.500 0.00 0.00 0.00 4.57
140 141 5.011329 AGACAAATGGATCAAAACAGTGCAT 59.989 36.000 0.00 0.00 0.00 3.96
141 142 4.992319 ACAAATGGATCAAAACAGTGCATG 59.008 37.500 0.00 0.00 0.00 4.06
142 143 5.221481 ACAAATGGATCAAAACAGTGCATGA 60.221 36.000 0.00 0.00 0.00 3.07
143 144 5.471556 AATGGATCAAAACAGTGCATGAA 57.528 34.783 0.00 0.00 0.00 2.57
144 145 4.241590 TGGATCAAAACAGTGCATGAAC 57.758 40.909 0.00 0.00 0.00 3.18
145 146 3.635836 TGGATCAAAACAGTGCATGAACA 59.364 39.130 6.60 0.00 0.00 3.18
146 147 4.232221 GGATCAAAACAGTGCATGAACAG 58.768 43.478 6.60 0.00 0.00 3.16
147 148 4.261741 GGATCAAAACAGTGCATGAACAGT 60.262 41.667 6.60 0.25 0.00 3.55
148 149 5.048782 GGATCAAAACAGTGCATGAACAGTA 60.049 40.000 6.60 0.00 0.00 2.74
149 150 5.826601 TCAAAACAGTGCATGAACAGTAA 57.173 34.783 6.60 0.00 0.00 2.24
150 151 6.201226 TCAAAACAGTGCATGAACAGTAAA 57.799 33.333 6.60 0.00 0.00 2.01
151 152 6.804677 TCAAAACAGTGCATGAACAGTAAAT 58.195 32.000 6.60 0.00 0.00 1.40
152 153 7.935520 TCAAAACAGTGCATGAACAGTAAATA 58.064 30.769 6.60 0.00 0.00 1.40
153 154 8.575589 TCAAAACAGTGCATGAACAGTAAATAT 58.424 29.630 6.60 0.00 0.00 1.28
154 155 9.195411 CAAAACAGTGCATGAACAGTAAATATT 57.805 29.630 6.60 0.00 0.00 1.28
155 156 9.762933 AAAACAGTGCATGAACAGTAAATATTT 57.237 25.926 6.60 5.89 0.00 1.40
156 157 9.762933 AAACAGTGCATGAACAGTAAATATTTT 57.237 25.926 6.60 0.00 0.00 1.82
157 158 9.762933 AACAGTGCATGAACAGTAAATATTTTT 57.237 25.926 6.60 0.00 0.00 1.94
198 199 3.378911 TTTTGAAATTTGGAGCGGACC 57.621 42.857 0.00 0.00 0.00 4.46
199 200 2.286365 TTGAAATTTGGAGCGGACCT 57.714 45.000 0.00 0.00 0.00 3.85
200 201 1.533625 TGAAATTTGGAGCGGACCTG 58.466 50.000 0.00 0.00 0.00 4.00
201 202 1.073125 TGAAATTTGGAGCGGACCTGA 59.927 47.619 0.00 0.00 0.00 3.86
202 203 1.468914 GAAATTTGGAGCGGACCTGAC 59.531 52.381 0.00 0.00 0.00 3.51
203 204 0.673644 AATTTGGAGCGGACCTGACG 60.674 55.000 0.00 0.00 0.00 4.35
210 211 4.277239 CGGACCTGACGCATCAAA 57.723 55.556 0.00 0.00 33.30 2.69
211 212 2.767536 CGGACCTGACGCATCAAAT 58.232 52.632 0.00 0.00 33.30 2.32
212 213 1.086696 CGGACCTGACGCATCAAATT 58.913 50.000 0.00 0.00 33.30 1.82
213 214 2.276201 CGGACCTGACGCATCAAATTA 58.724 47.619 0.00 0.00 33.30 1.40
214 215 2.872245 CGGACCTGACGCATCAAATTAT 59.128 45.455 0.00 0.00 33.30 1.28
215 216 3.059597 CGGACCTGACGCATCAAATTATC 60.060 47.826 0.00 0.00 33.30 1.75
216 217 4.130118 GGACCTGACGCATCAAATTATCT 58.870 43.478 0.00 0.00 33.30 1.98
217 218 5.297547 GGACCTGACGCATCAAATTATCTA 58.702 41.667 0.00 0.00 33.30 1.98
218 219 5.177696 GGACCTGACGCATCAAATTATCTAC 59.822 44.000 0.00 0.00 33.30 2.59
219 220 5.057149 ACCTGACGCATCAAATTATCTACC 58.943 41.667 0.00 0.00 33.30 3.18
220 221 5.056480 CCTGACGCATCAAATTATCTACCA 58.944 41.667 0.00 0.00 33.30 3.25
221 222 5.050091 CCTGACGCATCAAATTATCTACCAC 60.050 44.000 0.00 0.00 33.30 4.16
222 223 4.814234 TGACGCATCAAATTATCTACCACC 59.186 41.667 0.00 0.00 0.00 4.61
223 224 4.134563 ACGCATCAAATTATCTACCACCC 58.865 43.478 0.00 0.00 0.00 4.61
224 225 4.133820 CGCATCAAATTATCTACCACCCA 58.866 43.478 0.00 0.00 0.00 4.51
225 226 4.578516 CGCATCAAATTATCTACCACCCAA 59.421 41.667 0.00 0.00 0.00 4.12
226 227 5.241506 CGCATCAAATTATCTACCACCCAAT 59.758 40.000 0.00 0.00 0.00 3.16
227 228 6.429692 CGCATCAAATTATCTACCACCCAATA 59.570 38.462 0.00 0.00 0.00 1.90
228 229 7.121168 CGCATCAAATTATCTACCACCCAATAT 59.879 37.037 0.00 0.00 0.00 1.28
229 230 8.806146 GCATCAAATTATCTACCACCCAATATT 58.194 33.333 0.00 0.00 0.00 1.28
243 244 9.194972 ACCACCCAATATTTTTGAAATTTTTGT 57.805 25.926 0.00 0.00 0.00 2.83
281 282 4.668576 TTTTTATTCAGCTCGAGTGCAG 57.331 40.909 15.13 0.00 34.99 4.41
282 283 3.592898 TTTATTCAGCTCGAGTGCAGA 57.407 42.857 15.13 0.49 34.99 4.26
283 284 3.808466 TTATTCAGCTCGAGTGCAGAT 57.192 42.857 15.13 5.16 34.99 2.90
284 285 1.937278 ATTCAGCTCGAGTGCAGATG 58.063 50.000 15.13 0.00 34.99 2.90
285 286 0.890683 TTCAGCTCGAGTGCAGATGA 59.109 50.000 15.13 0.00 34.50 2.92
286 287 0.455005 TCAGCTCGAGTGCAGATGAG 59.545 55.000 15.13 4.97 31.35 2.90
287 288 3.703547 GCTCGAGTGCAGATGAGC 58.296 61.111 15.13 15.62 45.95 4.26
288 289 1.882167 GCTCGAGTGCAGATGAGCC 60.882 63.158 15.13 5.59 46.21 4.70
289 290 1.815196 CTCGAGTGCAGATGAGCCT 59.185 57.895 3.62 0.00 0.00 4.58
290 291 0.528033 CTCGAGTGCAGATGAGCCTG 60.528 60.000 3.62 0.00 37.23 4.85
291 292 1.521010 CGAGTGCAGATGAGCCTGG 60.521 63.158 0.00 0.00 34.82 4.45
292 293 1.818785 GAGTGCAGATGAGCCTGGC 60.819 63.158 11.65 11.65 34.82 4.85
293 294 2.827642 GTGCAGATGAGCCTGGCC 60.828 66.667 16.57 7.66 34.82 5.36
294 295 3.013327 TGCAGATGAGCCTGGCCT 61.013 61.111 16.57 1.63 34.82 5.19
295 296 2.203181 GCAGATGAGCCTGGCCTC 60.203 66.667 16.57 12.66 34.82 4.70
296 297 3.040206 GCAGATGAGCCTGGCCTCA 62.040 63.158 16.57 17.83 45.16 3.86
302 303 2.353357 TGAGCCTGGCCTCATAAATG 57.647 50.000 16.57 0.00 36.96 2.32
303 304 1.133699 TGAGCCTGGCCTCATAAATGG 60.134 52.381 16.57 0.00 36.96 3.16
304 305 1.143684 GAGCCTGGCCTCATAAATGGA 59.856 52.381 16.57 0.00 0.00 3.41
305 306 1.785208 AGCCTGGCCTCATAAATGGAT 59.215 47.619 16.57 0.00 0.00 3.41
306 307 2.178544 AGCCTGGCCTCATAAATGGATT 59.821 45.455 16.57 0.00 0.00 3.01
307 308 2.967887 GCCTGGCCTCATAAATGGATTT 59.032 45.455 7.66 0.00 0.00 2.17
308 309 3.389002 GCCTGGCCTCATAAATGGATTTT 59.611 43.478 7.66 0.00 0.00 1.82
309 310 4.741536 GCCTGGCCTCATAAATGGATTTTG 60.742 45.833 7.66 0.00 0.00 2.44
310 311 4.202284 CCTGGCCTCATAAATGGATTTTGG 60.202 45.833 3.32 0.00 0.00 3.28
311 312 4.360889 TGGCCTCATAAATGGATTTTGGT 58.639 39.130 3.32 0.00 0.00 3.67
312 313 4.405358 TGGCCTCATAAATGGATTTTGGTC 59.595 41.667 3.32 0.00 0.00 4.02
313 314 4.651045 GGCCTCATAAATGGATTTTGGTCT 59.349 41.667 0.00 0.00 0.00 3.85
314 315 5.833131 GGCCTCATAAATGGATTTTGGTCTA 59.167 40.000 0.00 0.00 0.00 2.59
315 316 6.323739 GGCCTCATAAATGGATTTTGGTCTAA 59.676 38.462 0.00 0.00 0.00 2.10
316 317 7.147742 GGCCTCATAAATGGATTTTGGTCTAAA 60.148 37.037 0.00 0.00 0.00 1.85
317 318 8.424133 GCCTCATAAATGGATTTTGGTCTAAAT 58.576 33.333 0.00 0.00 0.00 1.40
318 319 9.754382 CCTCATAAATGGATTTTGGTCTAAATG 57.246 33.333 0.00 0.00 0.00 2.32
327 328 9.921637 TGGATTTTGGTCTAAATGTTATGTTTC 57.078 29.630 0.00 0.00 0.00 2.78
333 334 8.697846 TGGTCTAAATGTTATGTTTCTCTACG 57.302 34.615 0.00 0.00 0.00 3.51
334 335 7.762615 TGGTCTAAATGTTATGTTTCTCTACGG 59.237 37.037 0.00 0.00 0.00 4.02
335 336 7.977853 GGTCTAAATGTTATGTTTCTCTACGGA 59.022 37.037 0.00 0.00 0.00 4.69
336 337 9.021863 GTCTAAATGTTATGTTTCTCTACGGAG 57.978 37.037 0.00 0.00 40.73 4.63
337 338 8.195436 TCTAAATGTTATGTTTCTCTACGGAGG 58.805 37.037 0.00 0.00 39.86 4.30
338 339 4.730949 TGTTATGTTTCTCTACGGAGGG 57.269 45.455 0.00 0.00 39.86 4.30
339 340 4.346730 TGTTATGTTTCTCTACGGAGGGA 58.653 43.478 0.00 0.00 39.86 4.20
340 341 4.401519 TGTTATGTTTCTCTACGGAGGGAG 59.598 45.833 0.00 0.00 39.86 4.30
341 342 2.599408 TGTTTCTCTACGGAGGGAGT 57.401 50.000 0.00 0.00 39.86 3.85
342 343 3.726557 TGTTTCTCTACGGAGGGAGTA 57.273 47.619 0.00 0.00 39.86 2.59
343 344 3.618351 TGTTTCTCTACGGAGGGAGTAG 58.382 50.000 0.00 0.00 42.03 2.57
344 345 3.009916 TGTTTCTCTACGGAGGGAGTAGT 59.990 47.826 0.00 0.00 41.55 2.73
351 352 3.666345 ACGGAGGGAGTAGTGTAGAAT 57.334 47.619 0.00 0.00 0.00 2.40
367 368 7.830739 AGTGTAGAATTTTTGGATAAGGCAAG 58.169 34.615 0.00 0.00 0.00 4.01
368 369 7.035612 GTGTAGAATTTTTGGATAAGGCAAGG 58.964 38.462 0.00 0.00 0.00 3.61
373 374 6.933514 ATTTTTGGATAAGGCAAGGAAGAA 57.066 33.333 0.00 0.00 0.00 2.52
385 386 3.549898 AAGGAAGAAGCCTTGGGAATT 57.450 42.857 0.00 0.00 46.25 2.17
386 387 2.812658 AGGAAGAAGCCTTGGGAATTG 58.187 47.619 0.00 0.00 33.46 2.32
387 388 1.827344 GGAAGAAGCCTTGGGAATTGG 59.173 52.381 0.00 0.00 31.62 3.16
388 389 1.827344 GAAGAAGCCTTGGGAATTGGG 59.173 52.381 0.00 0.00 31.62 4.12
389 390 1.084018 AGAAGCCTTGGGAATTGGGA 58.916 50.000 0.00 0.00 0.00 4.37
399 400 2.091720 TGGGAATTGGGATGACTGATGG 60.092 50.000 0.00 0.00 0.00 3.51
400 401 2.091665 GGGAATTGGGATGACTGATGGT 60.092 50.000 0.00 0.00 0.00 3.55
402 403 2.062971 ATTGGGATGACTGATGGTGC 57.937 50.000 0.00 0.00 0.00 5.01
403 404 0.697658 TTGGGATGACTGATGGTGCA 59.302 50.000 0.00 0.00 0.00 4.57
404 405 0.921166 TGGGATGACTGATGGTGCAT 59.079 50.000 0.00 0.00 0.00 3.96
405 406 1.134007 TGGGATGACTGATGGTGCATC 60.134 52.381 0.00 0.00 40.88 3.91
407 408 0.585357 GATGACTGATGGTGCATCGC 59.415 55.000 0.00 0.00 43.14 4.58
476 502 2.603652 GGGGAGTTTCCGGGAAGCT 61.604 63.158 23.90 23.90 37.43 3.74
526 591 2.978010 AAAGCGGCTTGACCCACG 60.978 61.111 17.16 0.00 33.26 4.94
533 598 2.738521 CTTGACCCACGCAGACGG 60.739 66.667 0.00 0.00 46.04 4.79
547 612 3.948086 GACGGACTGACGGACGCTG 62.948 68.421 0.00 0.00 38.39 5.18
552 617 3.753434 CTGACGGACGCTGCCTCT 61.753 66.667 0.00 0.00 0.00 3.69
623 688 4.400961 AAGGCGGCAGAGGTCAGC 62.401 66.667 13.08 0.00 0.00 4.26
633 698 4.928981 AGGTCAGCCTCCAATCCT 57.071 55.556 0.00 0.00 42.67 3.24
644 709 3.914771 CCTCCAATCCTCTCTCTTCTCT 58.085 50.000 0.00 0.00 0.00 3.10
650 715 0.106719 CCTCTCTCTTCTCTCCGGCT 60.107 60.000 0.00 0.00 0.00 5.52
721 789 3.460868 GCCCGGCTGATTTTGGGG 61.461 66.667 0.71 0.00 42.19 4.96
778 846 4.467084 GCGGATCTTGGGGCGTGA 62.467 66.667 0.00 0.00 0.00 4.35
779 847 2.511600 CGGATCTTGGGGCGTGAC 60.512 66.667 0.00 0.00 0.00 3.67
781 849 2.511600 GATCTTGGGGCGTGACGG 60.512 66.667 7.25 0.00 0.00 4.79
783 851 3.310860 ATCTTGGGGCGTGACGGTC 62.311 63.158 7.25 0.00 0.00 4.79
805 890 4.128388 GCGGTGGGGCGGATTTTG 62.128 66.667 0.00 0.00 0.00 2.44
806 891 3.448340 CGGTGGGGCGGATTTTGG 61.448 66.667 0.00 0.00 0.00 3.28
833 918 2.027314 CGCTGGCGAGGATCTGAG 59.973 66.667 9.51 0.00 42.83 3.35
834 919 2.420890 GCTGGCGAGGATCTGAGG 59.579 66.667 0.00 0.00 0.00 3.86
863 948 4.504916 CGCGTGAGGAGGCAGAGG 62.505 72.222 0.00 0.00 32.98 3.69
866 951 2.039624 GTGAGGAGGCAGAGGGGA 59.960 66.667 0.00 0.00 0.00 4.81
870 955 1.306568 AGGAGGCAGAGGGGAAGAC 60.307 63.158 0.00 0.00 0.00 3.01
872 957 1.682684 GAGGCAGAGGGGAAGACGA 60.683 63.158 0.00 0.00 0.00 4.20
873 958 1.950973 GAGGCAGAGGGGAAGACGAC 61.951 65.000 0.00 0.00 0.00 4.34
874 959 2.182030 GCAGAGGGGAAGACGACG 59.818 66.667 0.00 0.00 0.00 5.12
875 960 2.182030 CAGAGGGGAAGACGACGC 59.818 66.667 0.00 0.00 0.00 5.19
876 961 3.069318 AGAGGGGAAGACGACGCC 61.069 66.667 0.00 0.00 40.04 5.68
877 962 3.379445 GAGGGGAAGACGACGCCA 61.379 66.667 0.00 0.00 41.77 5.69
878 963 2.920912 AGGGGAAGACGACGCCAA 60.921 61.111 0.00 0.00 41.77 4.52
879 964 2.741211 GGGGAAGACGACGCCAAC 60.741 66.667 0.00 0.00 39.61 3.77
881 966 1.375523 GGGAAGACGACGCCAACAT 60.376 57.895 0.00 0.00 0.00 2.71
882 967 1.359459 GGGAAGACGACGCCAACATC 61.359 60.000 0.00 0.00 0.00 3.06
883 968 0.389948 GGAAGACGACGCCAACATCT 60.390 55.000 0.00 0.00 0.00 2.90
884 969 0.716108 GAAGACGACGCCAACATCTG 59.284 55.000 0.00 0.00 0.00 2.90
885 970 0.317160 AAGACGACGCCAACATCTGA 59.683 50.000 0.00 0.00 0.00 3.27
886 971 0.532573 AGACGACGCCAACATCTGAT 59.467 50.000 0.00 0.00 0.00 2.90
887 972 0.647410 GACGACGCCAACATCTGATG 59.353 55.000 15.83 15.83 0.00 3.07
888 973 0.740868 ACGACGCCAACATCTGATGG 60.741 55.000 20.83 6.99 40.52 3.51
893 978 1.725665 CCAACATCTGATGGCTGCG 59.274 57.895 20.83 8.62 31.18 5.18
894 979 1.028330 CCAACATCTGATGGCTGCGT 61.028 55.000 20.83 0.00 31.18 5.24
895 980 0.098200 CAACATCTGATGGCTGCGTG 59.902 55.000 20.83 6.09 33.60 5.34
896 981 1.028330 AACATCTGATGGCTGCGTGG 61.028 55.000 20.83 0.00 33.60 4.94
897 982 2.515523 ATCTGATGGCTGCGTGGC 60.516 61.111 0.00 0.00 42.18 5.01
898 983 3.040206 ATCTGATGGCTGCGTGGCT 62.040 57.895 4.85 0.00 42.34 4.75
899 984 2.547640 ATCTGATGGCTGCGTGGCTT 62.548 55.000 4.85 0.00 42.34 4.35
900 985 3.047718 CTGATGGCTGCGTGGCTTG 62.048 63.158 4.85 0.00 42.34 4.01
901 986 4.487412 GATGGCTGCGTGGCTTGC 62.487 66.667 4.85 0.00 42.34 4.01
919 1004 4.620332 GCTTGCTCTGTACTGATCTGTTCT 60.620 45.833 10.76 0.00 0.00 3.01
920 1005 5.393569 GCTTGCTCTGTACTGATCTGTTCTA 60.394 44.000 10.76 0.00 0.00 2.10
921 1006 5.826601 TGCTCTGTACTGATCTGTTCTAG 57.173 43.478 10.76 8.66 0.00 2.43
922 1007 5.257262 TGCTCTGTACTGATCTGTTCTAGT 58.743 41.667 10.76 0.00 0.00 2.57
923 1008 6.415573 TGCTCTGTACTGATCTGTTCTAGTA 58.584 40.000 10.76 5.15 0.00 1.82
940 1025 5.434408 TCTAGTATCTCCGTTGCAGAAGTA 58.566 41.667 0.00 0.00 0.00 2.24
946 1037 2.869801 CTCCGTTGCAGAAGTACAACAA 59.130 45.455 6.67 0.00 45.08 2.83
947 1038 3.271729 TCCGTTGCAGAAGTACAACAAA 58.728 40.909 6.67 0.00 45.08 2.83
954 1045 3.608008 GCAGAAGTACAACAAAGAGCAGC 60.608 47.826 0.00 0.00 0.00 5.25
957 1048 4.640201 AGAAGTACAACAAAGAGCAGCAAA 59.360 37.500 0.00 0.00 0.00 3.68
959 1050 3.947834 AGTACAACAAAGAGCAGCAAACT 59.052 39.130 0.00 0.00 0.00 2.66
991 1083 1.483004 TCGAGTCTCGATCCTCTGAGT 59.517 52.381 20.85 0.00 44.82 3.41
1083 1175 0.250640 GCGGCCTCATCTCCATGATT 60.251 55.000 0.00 0.00 38.42 2.57
1233 1331 2.496341 CTGGGCGATGCTCTTCGA 59.504 61.111 8.98 0.00 41.62 3.71
1290 1389 2.735857 GCGGCGTACCAGTTCGTT 60.736 61.111 9.37 0.00 34.57 3.85
1326 1433 2.672414 CGAGAGGTTCAGGGAGGTT 58.328 57.895 0.00 0.00 0.00 3.50
1338 1445 2.026449 CAGGGAGGTTCAGAGCAAGATT 60.026 50.000 0.00 0.00 0.00 2.40
1350 1464 4.646945 CAGAGCAAGATTGACTCCTACCTA 59.353 45.833 11.08 0.00 34.24 3.08
1398 1512 1.714899 GCATAACACGCCGCCTTGAT 61.715 55.000 0.00 0.00 0.00 2.57
1471 1600 0.759436 ACTTCCACAGTCGTCCCAGT 60.759 55.000 0.00 0.00 0.00 4.00
1490 1623 3.783111 GTTGCAGGTACGTACAACTTC 57.217 47.619 26.02 10.72 39.39 3.01
1511 1644 5.389642 TCAATACAAATTGATCGCTCGAC 57.610 39.130 0.00 0.00 45.17 4.20
1513 1646 2.386661 ACAAATTGATCGCTCGACCT 57.613 45.000 0.00 0.00 0.00 3.85
1514 1647 2.002586 ACAAATTGATCGCTCGACCTG 58.997 47.619 0.00 0.00 0.00 4.00
1515 1648 1.009829 AAATTGATCGCTCGACCTGC 58.990 50.000 0.00 0.00 0.00 4.85
1516 1649 0.176680 AATTGATCGCTCGACCTGCT 59.823 50.000 0.00 0.00 0.00 4.24
1518 1651 1.595093 TTGATCGCTCGACCTGCTGA 61.595 55.000 0.00 0.00 0.00 4.26
1520 1653 1.719725 GATCGCTCGACCTGCTGAGA 61.720 60.000 0.00 0.00 34.04 3.27
1521 1654 1.723608 ATCGCTCGACCTGCTGAGAG 61.724 60.000 0.00 0.00 34.04 3.20
1522 1655 2.493973 GCTCGACCTGCTGAGAGG 59.506 66.667 10.71 0.00 39.28 3.69
1523 1656 2.049185 GCTCGACCTGCTGAGAGGA 61.049 63.158 5.20 0.00 36.51 3.71
1524 1657 1.391157 GCTCGACCTGCTGAGAGGAT 61.391 60.000 5.20 0.00 36.51 3.24
1525 1658 1.974265 CTCGACCTGCTGAGAGGATA 58.026 55.000 5.20 0.00 36.51 2.59
1526 1659 2.513753 CTCGACCTGCTGAGAGGATAT 58.486 52.381 5.20 0.00 36.51 1.63
1527 1660 2.228582 CTCGACCTGCTGAGAGGATATG 59.771 54.545 5.20 0.00 36.51 1.78
1528 1661 1.336702 CGACCTGCTGAGAGGATATGC 60.337 57.143 5.20 0.00 36.51 3.14
1529 1662 1.969923 GACCTGCTGAGAGGATATGCT 59.030 52.381 0.00 0.00 36.51 3.79
1530 1663 1.693062 ACCTGCTGAGAGGATATGCTG 59.307 52.381 0.00 0.00 36.51 4.41
1531 1664 1.969208 CCTGCTGAGAGGATATGCTGA 59.031 52.381 0.00 0.00 34.69 4.26
1532 1665 2.367894 CCTGCTGAGAGGATATGCTGAA 59.632 50.000 0.00 0.00 34.69 3.02
1540 1673 7.148440 GCTGAGAGGATATGCTGAAATTGATAC 60.148 40.741 0.00 0.00 0.00 2.24
1544 1677 7.877097 AGAGGATATGCTGAAATTGATACTGAC 59.123 37.037 0.00 0.00 0.00 3.51
1547 1680 2.677836 TGCTGAAATTGATACTGACGGC 59.322 45.455 0.00 0.00 0.00 5.68
1551 1838 2.225068 AATTGATACTGACGGCTCGG 57.775 50.000 0.00 0.00 0.00 4.63
1568 1855 3.552875 CTCGGGATGAAGGTAGTACTGA 58.447 50.000 5.39 0.00 0.00 3.41
1582 1889 7.536855 AGGTAGTACTGAAATCTTGTACGAAG 58.463 38.462 5.39 0.00 40.77 3.79
1583 1890 6.750963 GGTAGTACTGAAATCTTGTACGAAGG 59.249 42.308 5.39 0.00 40.77 3.46
1585 1892 3.939066 ACTGAAATCTTGTACGAAGGGG 58.061 45.455 0.00 0.00 0.00 4.79
1586 1893 3.270877 CTGAAATCTTGTACGAAGGGGG 58.729 50.000 0.00 0.00 0.00 5.40
1589 1896 0.252197 ATCTTGTACGAAGGGGGTGC 59.748 55.000 0.00 0.00 0.00 5.01
1607 1993 1.421485 CGCGGTCACTGCTCATTTC 59.579 57.895 7.12 0.00 0.00 2.17
1629 2015 4.039730 TCTGGTCTCTTTTTCAGGAGTCTG 59.960 45.833 0.00 0.00 42.21 3.51
1653 2937 4.031611 GGAGGTTGTTCAGGAGGTACTAT 58.968 47.826 0.00 0.00 41.55 2.12
1663 3265 3.322254 CAGGAGGTACTATCGCAAGGAAT 59.678 47.826 0.00 0.00 41.55 3.01
1703 3309 2.421952 GGAGATCATAGCTGCCACCAAA 60.422 50.000 0.00 0.00 0.00 3.28
1727 3350 1.381522 TCGCCCATGACACAATGATG 58.618 50.000 0.00 0.00 0.00 3.07
1740 3363 0.751643 AATGATGGGTTACGGCAGCC 60.752 55.000 0.00 0.00 34.62 4.85
1760 3386 0.919289 ATGGAAGGGTGTACAGGGGG 60.919 60.000 0.00 0.00 0.00 5.40
1793 3419 0.036388 GACGAGAGGTGGCCATCAAA 60.036 55.000 20.62 0.00 0.00 2.69
1838 3500 2.048127 GACTTCCGCACGGAGCTT 60.048 61.111 12.15 0.41 46.06 3.74
1845 3507 3.470567 GCACGGAGCTTGACGTCG 61.471 66.667 11.62 0.00 42.04 5.12
1900 3562 1.162698 CTTGGATGGTGTGTGAGCAG 58.837 55.000 0.00 0.00 34.93 4.24
1907 3605 0.955919 GGTGTGTGAGCAGTAAGGGC 60.956 60.000 0.00 0.00 0.00 5.19
1938 3657 2.032071 CCCGGCGAACAAAGGAGT 59.968 61.111 9.30 0.00 0.00 3.85
1939 3658 1.599797 CCCGGCGAACAAAGGAGTT 60.600 57.895 9.30 0.00 0.00 3.01
1955 3674 3.118956 AGGAGTTAGAAAGGCTGATCGTG 60.119 47.826 0.00 0.00 0.00 4.35
2174 3902 0.981183 TCGATGTTAGTTGGGTGCCT 59.019 50.000 0.00 0.00 0.00 4.75
2432 4191 3.781307 CCCGTCATTGAGGCCGGA 61.781 66.667 5.05 0.00 43.01 5.14
2468 4229 2.860009 CTAGATAGGCGACCTGTACCA 58.140 52.381 8.44 0.00 34.61 3.25
2476 4237 0.537188 CGACCTGTACCAGAGCCAAT 59.463 55.000 0.00 0.00 32.44 3.16
2925 6795 2.632377 AGTGGCCGTCAATCACATTAG 58.368 47.619 0.00 0.00 34.17 1.73
2955 6836 3.646162 ACGAGCATCATTAGGTAATCCCA 59.354 43.478 0.00 0.00 31.79 4.37
3041 8256 1.946984 CTTCTACACCACCCACCCTA 58.053 55.000 0.00 0.00 0.00 3.53
3043 8258 0.252375 TCTACACCACCCACCCTACC 60.252 60.000 0.00 0.00 0.00 3.18
3056 8272 4.838423 CCCACCCTACCTTTTCTTTTGAAT 59.162 41.667 0.00 0.00 38.37 2.57
3066 8282 5.070313 CCTTTTCTTTTGAATCCCAGAACCA 59.930 40.000 0.00 0.00 38.37 3.67
3071 8287 6.180472 TCTTTTGAATCCCAGAACCATAGAC 58.820 40.000 0.00 0.00 0.00 2.59
3080 8296 4.772100 CCCAGAACCATAGACCAATTGTTT 59.228 41.667 4.43 0.00 0.00 2.83
3193 8409 9.315525 GGTAACATAGAAATTGGAGTAAGAGAC 57.684 37.037 0.00 0.00 0.00 3.36
3261 8477 6.475727 GCTGCGGATGTCGTTATATATGTAAT 59.524 38.462 0.00 0.00 41.72 1.89
3272 8488 9.815936 TCGTTATATATGTAATGTAGTGTCGTG 57.184 33.333 10.25 0.00 0.00 4.35
3320 8537 5.703130 AGGATGTACTGCTTTCTGTTTCTTC 59.297 40.000 0.00 0.00 0.00 2.87
3360 8631 3.338249 TGTATGCAGAAGCTCAGAAACC 58.662 45.455 0.00 0.00 42.74 3.27
3362 8633 2.175878 TGCAGAAGCTCAGAAACCTC 57.824 50.000 0.00 0.00 42.74 3.85
3589 8868 2.744741 GCTTTCTTGTCCTAGTGAAGCC 59.255 50.000 0.00 0.00 33.47 4.35
3625 8904 1.501169 GTGCTTTCTTTTGCGGCAAT 58.499 45.000 17.19 0.00 34.65 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.777297 GCATCAAATTATATACCACCCAATTTT 57.223 29.630 0.00 0.00 28.88 1.82
33 34 8.087750 CGCATCAAATTATATACCACCCAATTT 58.912 33.333 0.00 0.00 30.89 1.82
34 35 7.232534 ACGCATCAAATTATATACCACCCAATT 59.767 33.333 0.00 0.00 0.00 2.32
35 36 6.719370 ACGCATCAAATTATATACCACCCAAT 59.281 34.615 0.00 0.00 0.00 3.16
36 37 6.016693 CACGCATCAAATTATATACCACCCAA 60.017 38.462 0.00 0.00 0.00 4.12
37 38 5.471797 CACGCATCAAATTATATACCACCCA 59.528 40.000 0.00 0.00 0.00 4.51
38 39 5.703592 TCACGCATCAAATTATATACCACCC 59.296 40.000 0.00 0.00 0.00 4.61
39 40 6.128282 CCTCACGCATCAAATTATATACCACC 60.128 42.308 0.00 0.00 0.00 4.61
40 41 6.426937 ACCTCACGCATCAAATTATATACCAC 59.573 38.462 0.00 0.00 0.00 4.16
41 42 6.530120 ACCTCACGCATCAAATTATATACCA 58.470 36.000 0.00 0.00 0.00 3.25
42 43 6.092259 GGACCTCACGCATCAAATTATATACC 59.908 42.308 0.00 0.00 0.00 2.73
43 44 6.874134 AGGACCTCACGCATCAAATTATATAC 59.126 38.462 0.00 0.00 0.00 1.47
44 45 7.004555 AGGACCTCACGCATCAAATTATATA 57.995 36.000 0.00 0.00 0.00 0.86
45 46 5.869579 AGGACCTCACGCATCAAATTATAT 58.130 37.500 0.00 0.00 0.00 0.86
46 47 5.070446 AGAGGACCTCACGCATCAAATTATA 59.930 40.000 23.60 0.00 32.06 0.98
47 48 4.130118 GAGGACCTCACGCATCAAATTAT 58.870 43.478 17.10 0.00 0.00 1.28
48 49 3.197766 AGAGGACCTCACGCATCAAATTA 59.802 43.478 23.60 0.00 32.06 1.40
49 50 2.026822 AGAGGACCTCACGCATCAAATT 60.027 45.455 23.60 0.00 32.06 1.82
50 51 1.556911 AGAGGACCTCACGCATCAAAT 59.443 47.619 23.60 0.00 32.06 2.32
51 52 0.976641 AGAGGACCTCACGCATCAAA 59.023 50.000 23.60 0.00 32.06 2.69
52 53 0.532573 GAGAGGACCTCACGCATCAA 59.467 55.000 23.60 0.00 41.58 2.57
53 54 1.323271 GGAGAGGACCTCACGCATCA 61.323 60.000 23.60 0.00 43.76 3.07
54 55 1.323271 TGGAGAGGACCTCACGCATC 61.323 60.000 23.60 11.29 43.76 3.91
55 56 0.904865 TTGGAGAGGACCTCACGCAT 60.905 55.000 23.60 1.71 43.76 4.73
56 57 0.904865 ATTGGAGAGGACCTCACGCA 60.905 55.000 23.60 13.71 43.76 5.24
57 58 0.250513 AATTGGAGAGGACCTCACGC 59.749 55.000 23.60 11.73 43.76 5.34
58 59 2.770164 AAATTGGAGAGGACCTCACG 57.230 50.000 23.60 0.00 43.76 4.35
59 60 4.398319 TCAAAAATTGGAGAGGACCTCAC 58.602 43.478 23.60 16.96 43.76 3.51
60 61 4.722526 TCAAAAATTGGAGAGGACCTCA 57.277 40.909 23.60 2.79 43.76 3.86
61 62 5.163713 CGATTCAAAAATTGGAGAGGACCTC 60.164 44.000 14.15 14.15 41.22 3.85
62 63 4.702131 CGATTCAAAAATTGGAGAGGACCT 59.298 41.667 0.00 0.00 0.00 3.85
63 64 4.459337 ACGATTCAAAAATTGGAGAGGACC 59.541 41.667 0.00 0.00 31.42 4.46
64 65 5.629079 ACGATTCAAAAATTGGAGAGGAC 57.371 39.130 0.00 0.00 31.42 3.85
65 66 6.446318 CAAACGATTCAAAAATTGGAGAGGA 58.554 36.000 0.00 0.00 31.42 3.71
66 67 5.634859 CCAAACGATTCAAAAATTGGAGAGG 59.365 40.000 0.00 0.00 39.69 3.69
67 68 6.363357 GTCCAAACGATTCAAAAATTGGAGAG 59.637 38.462 5.35 0.00 44.92 3.20
68 69 6.040391 AGTCCAAACGATTCAAAAATTGGAGA 59.960 34.615 5.35 0.00 44.92 3.71
69 70 6.215845 AGTCCAAACGATTCAAAAATTGGAG 58.784 36.000 5.35 0.00 44.92 3.86
70 71 6.155475 AGTCCAAACGATTCAAAAATTGGA 57.845 33.333 1.12 1.12 42.84 3.53
71 72 6.701400 AGAAGTCCAAACGATTCAAAAATTGG 59.299 34.615 0.00 0.00 38.88 3.16
72 73 7.434897 TCAGAAGTCCAAACGATTCAAAAATTG 59.565 33.333 0.00 0.00 33.15 2.32
73 74 7.488322 TCAGAAGTCCAAACGATTCAAAAATT 58.512 30.769 0.00 0.00 0.00 1.82
74 75 7.038154 TCAGAAGTCCAAACGATTCAAAAAT 57.962 32.000 0.00 0.00 0.00 1.82
75 76 6.443934 TCAGAAGTCCAAACGATTCAAAAA 57.556 33.333 0.00 0.00 0.00 1.94
76 77 5.505654 GCTCAGAAGTCCAAACGATTCAAAA 60.506 40.000 0.00 0.00 0.00 2.44
77 78 4.024048 GCTCAGAAGTCCAAACGATTCAAA 60.024 41.667 0.00 0.00 0.00 2.69
78 79 3.498397 GCTCAGAAGTCCAAACGATTCAA 59.502 43.478 0.00 0.00 0.00 2.69
79 80 3.067106 GCTCAGAAGTCCAAACGATTCA 58.933 45.455 0.00 0.00 0.00 2.57
80 81 3.067106 TGCTCAGAAGTCCAAACGATTC 58.933 45.455 0.00 0.00 0.00 2.52
81 82 3.070018 CTGCTCAGAAGTCCAAACGATT 58.930 45.455 0.00 0.00 0.00 3.34
82 83 2.693069 CTGCTCAGAAGTCCAAACGAT 58.307 47.619 0.00 0.00 0.00 3.73
83 84 1.873903 GCTGCTCAGAAGTCCAAACGA 60.874 52.381 0.29 0.00 0.00 3.85
84 85 0.514691 GCTGCTCAGAAGTCCAAACG 59.485 55.000 0.29 0.00 0.00 3.60
85 86 1.803555 GAGCTGCTCAGAAGTCCAAAC 59.196 52.381 24.02 0.00 0.00 2.93
86 87 1.696336 AGAGCTGCTCAGAAGTCCAAA 59.304 47.619 29.49 0.00 32.06 3.28
87 88 1.274728 GAGAGCTGCTCAGAAGTCCAA 59.725 52.381 29.49 0.00 43.38 3.53
88 89 0.894141 GAGAGCTGCTCAGAAGTCCA 59.106 55.000 29.49 0.00 43.38 4.02
89 90 0.179140 CGAGAGCTGCTCAGAAGTCC 60.179 60.000 29.49 9.58 44.15 3.85
90 91 0.179140 CCGAGAGCTGCTCAGAAGTC 60.179 60.000 29.49 17.18 44.15 3.01
91 92 1.889454 CCGAGAGCTGCTCAGAAGT 59.111 57.895 29.49 10.20 44.15 3.01
92 93 1.519013 GCCGAGAGCTGCTCAGAAG 60.519 63.158 29.49 16.41 44.15 2.85
93 94 1.820010 TTGCCGAGAGCTGCTCAGAA 61.820 55.000 29.49 11.25 44.15 3.02
94 95 1.820010 TTTGCCGAGAGCTGCTCAGA 61.820 55.000 29.49 7.15 44.15 3.27
95 96 0.952497 TTTTGCCGAGAGCTGCTCAG 60.952 55.000 29.49 21.79 44.15 3.35
96 97 0.534877 TTTTTGCCGAGAGCTGCTCA 60.535 50.000 29.49 8.15 44.15 4.26
97 98 2.247790 TTTTTGCCGAGAGCTGCTC 58.752 52.632 21.72 21.72 44.23 4.26
98 99 4.481195 TTTTTGCCGAGAGCTGCT 57.519 50.000 0.00 0.00 44.23 4.24
112 113 7.201635 GCACTGTTTTGATCCATTTGTCTTTTT 60.202 33.333 0.00 0.00 0.00 1.94
113 114 6.258507 GCACTGTTTTGATCCATTTGTCTTTT 59.741 34.615 0.00 0.00 0.00 2.27
114 115 5.754890 GCACTGTTTTGATCCATTTGTCTTT 59.245 36.000 0.00 0.00 0.00 2.52
115 116 5.163426 TGCACTGTTTTGATCCATTTGTCTT 60.163 36.000 0.00 0.00 0.00 3.01
116 117 4.341806 TGCACTGTTTTGATCCATTTGTCT 59.658 37.500 0.00 0.00 0.00 3.41
117 118 4.619973 TGCACTGTTTTGATCCATTTGTC 58.380 39.130 0.00 0.00 0.00 3.18
118 119 4.669206 TGCACTGTTTTGATCCATTTGT 57.331 36.364 0.00 0.00 0.00 2.83
119 120 5.231702 TCATGCACTGTTTTGATCCATTTG 58.768 37.500 0.00 0.00 0.00 2.32
120 121 5.471556 TCATGCACTGTTTTGATCCATTT 57.528 34.783 0.00 0.00 0.00 2.32
121 122 5.221481 TGTTCATGCACTGTTTTGATCCATT 60.221 36.000 0.00 0.00 0.00 3.16
122 123 4.281435 TGTTCATGCACTGTTTTGATCCAT 59.719 37.500 0.00 0.00 0.00 3.41
123 124 3.635836 TGTTCATGCACTGTTTTGATCCA 59.364 39.130 0.00 0.00 0.00 3.41
124 125 4.232221 CTGTTCATGCACTGTTTTGATCC 58.768 43.478 0.00 0.00 0.00 3.36
125 126 4.863491 ACTGTTCATGCACTGTTTTGATC 58.137 39.130 2.30 0.00 0.00 2.92
126 127 4.924305 ACTGTTCATGCACTGTTTTGAT 57.076 36.364 2.30 0.00 0.00 2.57
127 128 5.826601 TTACTGTTCATGCACTGTTTTGA 57.173 34.783 12.69 0.00 31.81 2.69
128 129 8.746922 ATATTTACTGTTCATGCACTGTTTTG 57.253 30.769 12.69 0.00 31.81 2.44
129 130 9.762933 AAATATTTACTGTTCATGCACTGTTTT 57.237 25.926 12.69 5.17 31.81 2.43
130 131 9.762933 AAAATATTTACTGTTCATGCACTGTTT 57.237 25.926 12.69 0.00 31.81 2.83
131 132 9.762933 AAAAATATTTACTGTTCATGCACTGTT 57.237 25.926 12.69 0.00 31.81 3.16
177 178 3.386402 AGGTCCGCTCCAAATTTCAAAAA 59.614 39.130 0.00 0.00 0.00 1.94
178 179 2.962421 AGGTCCGCTCCAAATTTCAAAA 59.038 40.909 0.00 0.00 0.00 2.44
179 180 2.295909 CAGGTCCGCTCCAAATTTCAAA 59.704 45.455 0.00 0.00 0.00 2.69
180 181 1.885887 CAGGTCCGCTCCAAATTTCAA 59.114 47.619 0.00 0.00 0.00 2.69
181 182 1.073125 TCAGGTCCGCTCCAAATTTCA 59.927 47.619 0.00 0.00 0.00 2.69
182 183 1.468914 GTCAGGTCCGCTCCAAATTTC 59.531 52.381 0.00 0.00 0.00 2.17
183 184 1.534729 GTCAGGTCCGCTCCAAATTT 58.465 50.000 0.00 0.00 0.00 1.82
184 185 0.673644 CGTCAGGTCCGCTCCAAATT 60.674 55.000 0.00 0.00 0.00 1.82
185 186 1.079127 CGTCAGGTCCGCTCCAAAT 60.079 57.895 0.00 0.00 0.00 2.32
186 187 2.342279 CGTCAGGTCCGCTCCAAA 59.658 61.111 0.00 0.00 0.00 3.28
193 194 1.086696 AATTTGATGCGTCAGGTCCG 58.913 50.000 8.93 0.00 35.39 4.79
194 195 4.130118 AGATAATTTGATGCGTCAGGTCC 58.870 43.478 8.93 0.00 35.39 4.46
195 196 5.177696 GGTAGATAATTTGATGCGTCAGGTC 59.822 44.000 8.93 4.68 35.39 3.85
196 197 5.057149 GGTAGATAATTTGATGCGTCAGGT 58.943 41.667 8.93 0.00 35.39 4.00
197 198 5.050091 GTGGTAGATAATTTGATGCGTCAGG 60.050 44.000 8.93 0.00 35.39 3.86
198 199 5.050091 GGTGGTAGATAATTTGATGCGTCAG 60.050 44.000 8.93 0.00 35.39 3.51
199 200 4.814234 GGTGGTAGATAATTTGATGCGTCA 59.186 41.667 3.97 3.97 0.00 4.35
200 201 4.213482 GGGTGGTAGATAATTTGATGCGTC 59.787 45.833 0.00 0.00 0.00 5.19
201 202 4.134563 GGGTGGTAGATAATTTGATGCGT 58.865 43.478 0.00 0.00 0.00 5.24
202 203 4.133820 TGGGTGGTAGATAATTTGATGCG 58.866 43.478 0.00 0.00 0.00 4.73
203 204 6.655078 ATTGGGTGGTAGATAATTTGATGC 57.345 37.500 0.00 0.00 0.00 3.91
217 218 9.194972 ACAAAAATTTCAAAAATATTGGGTGGT 57.805 25.926 0.00 0.00 0.00 4.16
260 261 4.314961 TCTGCACTCGAGCTGAATAAAAA 58.685 39.130 13.61 0.00 39.14 1.94
261 262 3.925379 TCTGCACTCGAGCTGAATAAAA 58.075 40.909 13.61 0.00 39.14 1.52
262 263 3.592898 TCTGCACTCGAGCTGAATAAA 57.407 42.857 13.61 0.00 39.14 1.40
263 264 3.131046 TCATCTGCACTCGAGCTGAATAA 59.869 43.478 13.61 0.00 43.99 1.40
264 265 2.689983 TCATCTGCACTCGAGCTGAATA 59.310 45.455 13.61 0.00 43.99 1.75
265 266 1.479730 TCATCTGCACTCGAGCTGAAT 59.520 47.619 13.61 0.00 43.99 2.57
266 267 0.890683 TCATCTGCACTCGAGCTGAA 59.109 50.000 13.61 3.92 43.99 3.02
267 268 0.455005 CTCATCTGCACTCGAGCTGA 59.545 55.000 13.61 10.48 44.70 4.26
268 269 1.146957 GCTCATCTGCACTCGAGCTG 61.147 60.000 13.61 11.23 45.86 4.24
269 270 1.141449 GCTCATCTGCACTCGAGCT 59.859 57.895 13.61 0.00 45.86 4.09
270 271 3.703547 GCTCATCTGCACTCGAGC 58.296 61.111 13.61 9.91 43.60 5.03
271 272 0.528033 CAGGCTCATCTGCACTCGAG 60.528 60.000 11.84 11.84 34.04 4.04
272 273 1.514553 CAGGCTCATCTGCACTCGA 59.485 57.895 0.00 0.00 34.04 4.04
273 274 1.521010 CCAGGCTCATCTGCACTCG 60.521 63.158 0.00 0.00 33.64 4.18
274 275 1.818785 GCCAGGCTCATCTGCACTC 60.819 63.158 3.29 0.00 33.64 3.51
275 276 2.271497 GCCAGGCTCATCTGCACT 59.729 61.111 3.29 0.00 33.64 4.40
276 277 2.827642 GGCCAGGCTCATCTGCAC 60.828 66.667 12.43 0.00 33.64 4.57
277 278 3.013327 AGGCCAGGCTCATCTGCA 61.013 61.111 12.43 0.00 33.64 4.41
278 279 2.203181 GAGGCCAGGCTCATCTGC 60.203 66.667 12.43 0.00 33.64 4.26
279 280 1.054231 TATGAGGCCAGGCTCATCTG 58.946 55.000 32.44 0.00 40.38 2.90
280 281 1.811778 TTATGAGGCCAGGCTCATCT 58.188 50.000 32.44 18.34 40.38 2.90
281 282 2.645838 TTTATGAGGCCAGGCTCATC 57.354 50.000 32.44 18.78 40.38 2.92
282 283 2.490351 CCATTTATGAGGCCAGGCTCAT 60.490 50.000 31.52 31.52 42.28 2.90
283 284 1.133699 CCATTTATGAGGCCAGGCTCA 60.134 52.381 24.03 24.03 0.00 4.26
284 285 1.143684 TCCATTTATGAGGCCAGGCTC 59.856 52.381 12.43 13.93 0.00 4.70
285 286 1.225373 TCCATTTATGAGGCCAGGCT 58.775 50.000 12.43 1.67 0.00 4.58
286 287 2.299326 ATCCATTTATGAGGCCAGGC 57.701 50.000 5.01 1.26 0.00 4.85
287 288 4.202284 CCAAAATCCATTTATGAGGCCAGG 60.202 45.833 5.01 0.00 0.00 4.45
288 289 4.406649 ACCAAAATCCATTTATGAGGCCAG 59.593 41.667 5.01 0.00 0.00 4.85
289 290 4.360889 ACCAAAATCCATTTATGAGGCCA 58.639 39.130 5.01 0.00 0.00 5.36
290 291 4.651045 AGACCAAAATCCATTTATGAGGCC 59.349 41.667 0.00 0.00 0.00 5.19
291 292 5.859205 AGACCAAAATCCATTTATGAGGC 57.141 39.130 0.00 0.00 0.00 4.70
292 293 9.754382 CATTTAGACCAAAATCCATTTATGAGG 57.246 33.333 0.00 0.00 0.00 3.86
301 302 9.921637 GAAACATAACATTTAGACCAAAATCCA 57.078 29.630 0.00 0.00 0.00 3.41
307 308 9.146984 CGTAGAGAAACATAACATTTAGACCAA 57.853 33.333 0.00 0.00 0.00 3.67
308 309 7.762615 CCGTAGAGAAACATAACATTTAGACCA 59.237 37.037 0.00 0.00 0.00 4.02
309 310 7.977853 TCCGTAGAGAAACATAACATTTAGACC 59.022 37.037 0.00 0.00 0.00 3.85
310 311 8.922058 TCCGTAGAGAAACATAACATTTAGAC 57.078 34.615 0.00 0.00 0.00 2.59
311 312 8.195436 CCTCCGTAGAGAAACATAACATTTAGA 58.805 37.037 0.00 0.00 43.39 2.10
312 313 7.438459 CCCTCCGTAGAGAAACATAACATTTAG 59.562 40.741 0.00 0.00 43.39 1.85
313 314 7.124599 TCCCTCCGTAGAGAAACATAACATTTA 59.875 37.037 0.00 0.00 43.39 1.40
314 315 6.070424 TCCCTCCGTAGAGAAACATAACATTT 60.070 38.462 0.00 0.00 43.39 2.32
315 316 5.424252 TCCCTCCGTAGAGAAACATAACATT 59.576 40.000 0.00 0.00 43.39 2.71
316 317 4.960469 TCCCTCCGTAGAGAAACATAACAT 59.040 41.667 0.00 0.00 43.39 2.71
317 318 4.346730 TCCCTCCGTAGAGAAACATAACA 58.653 43.478 0.00 0.00 43.39 2.41
318 319 4.401837 ACTCCCTCCGTAGAGAAACATAAC 59.598 45.833 0.00 0.00 43.39 1.89
319 320 4.607239 ACTCCCTCCGTAGAGAAACATAA 58.393 43.478 0.00 0.00 43.39 1.90
320 321 4.246712 ACTCCCTCCGTAGAGAAACATA 57.753 45.455 0.00 0.00 43.39 2.29
321 322 3.103080 ACTCCCTCCGTAGAGAAACAT 57.897 47.619 0.00 0.00 43.39 2.71
322 323 2.599408 ACTCCCTCCGTAGAGAAACA 57.401 50.000 0.00 0.00 43.39 2.83
323 324 3.377798 CACTACTCCCTCCGTAGAGAAAC 59.622 52.174 4.40 0.00 43.39 2.78
324 325 3.009916 ACACTACTCCCTCCGTAGAGAAA 59.990 47.826 4.40 0.00 43.39 2.52
325 326 2.575279 ACACTACTCCCTCCGTAGAGAA 59.425 50.000 4.40 0.00 43.39 2.87
326 327 2.194859 ACACTACTCCCTCCGTAGAGA 58.805 52.381 4.40 0.00 43.39 3.10
327 328 2.713863 ACACTACTCCCTCCGTAGAG 57.286 55.000 4.40 0.00 38.14 2.43
328 329 3.378512 TCTACACTACTCCCTCCGTAGA 58.621 50.000 4.40 0.00 38.14 2.59
329 330 3.834489 TCTACACTACTCCCTCCGTAG 57.166 52.381 0.00 0.00 40.07 3.51
330 331 4.785346 ATTCTACACTACTCCCTCCGTA 57.215 45.455 0.00 0.00 0.00 4.02
331 332 3.666345 ATTCTACACTACTCCCTCCGT 57.334 47.619 0.00 0.00 0.00 4.69
332 333 5.340439 AAAATTCTACACTACTCCCTCCG 57.660 43.478 0.00 0.00 0.00 4.63
333 334 5.880887 CCAAAAATTCTACACTACTCCCTCC 59.119 44.000 0.00 0.00 0.00 4.30
334 335 6.708285 TCCAAAAATTCTACACTACTCCCTC 58.292 40.000 0.00 0.00 0.00 4.30
335 336 6.697641 TCCAAAAATTCTACACTACTCCCT 57.302 37.500 0.00 0.00 0.00 4.20
336 337 9.110502 CTTATCCAAAAATTCTACACTACTCCC 57.889 37.037 0.00 0.00 0.00 4.30
337 338 9.110502 CCTTATCCAAAAATTCTACACTACTCC 57.889 37.037 0.00 0.00 0.00 3.85
338 339 8.613482 GCCTTATCCAAAAATTCTACACTACTC 58.387 37.037 0.00 0.00 0.00 2.59
339 340 8.107095 TGCCTTATCCAAAAATTCTACACTACT 58.893 33.333 0.00 0.00 0.00 2.57
340 341 8.276252 TGCCTTATCCAAAAATTCTACACTAC 57.724 34.615 0.00 0.00 0.00 2.73
341 342 8.871629 TTGCCTTATCCAAAAATTCTACACTA 57.128 30.769 0.00 0.00 0.00 2.74
342 343 7.093771 CCTTGCCTTATCCAAAAATTCTACACT 60.094 37.037 0.00 0.00 0.00 3.55
343 344 7.035612 CCTTGCCTTATCCAAAAATTCTACAC 58.964 38.462 0.00 0.00 0.00 2.90
344 345 6.951198 TCCTTGCCTTATCCAAAAATTCTACA 59.049 34.615 0.00 0.00 0.00 2.74
351 352 5.279456 GCTTCTTCCTTGCCTTATCCAAAAA 60.279 40.000 0.00 0.00 0.00 1.94
367 368 1.827344 CCAATTCCCAAGGCTTCTTCC 59.173 52.381 0.00 0.00 0.00 3.46
368 369 1.827344 CCCAATTCCCAAGGCTTCTTC 59.173 52.381 0.00 0.00 0.00 2.87
373 374 1.009997 TCATCCCAATTCCCAAGGCT 58.990 50.000 0.00 0.00 0.00 4.58
383 384 1.285667 TGCACCATCAGTCATCCCAAT 59.714 47.619 0.00 0.00 0.00 3.16
384 385 0.697658 TGCACCATCAGTCATCCCAA 59.302 50.000 0.00 0.00 0.00 4.12
385 386 0.921166 ATGCACCATCAGTCATCCCA 59.079 50.000 0.00 0.00 0.00 4.37
386 387 1.602311 GATGCACCATCAGTCATCCC 58.398 55.000 0.00 0.00 40.28 3.85
387 388 1.224075 CGATGCACCATCAGTCATCC 58.776 55.000 6.09 0.00 40.54 3.51
388 389 0.585357 GCGATGCACCATCAGTCATC 59.415 55.000 6.09 0.00 40.54 2.92
389 390 1.156034 CGCGATGCACCATCAGTCAT 61.156 55.000 0.00 0.00 40.54 3.06
514 575 3.050275 GTCTGCGTGGGTCAAGCC 61.050 66.667 3.66 0.00 38.02 4.35
526 591 2.126424 GTCCGTCAGTCCGTCTGC 60.126 66.667 0.79 0.00 43.32 4.26
527 592 2.176055 CGTCCGTCAGTCCGTCTG 59.824 66.667 0.00 0.00 44.85 3.51
533 598 3.973267 GAGGCAGCGTCCGTCAGTC 62.973 68.421 3.53 0.00 0.00 3.51
547 612 1.101049 CGAGAGTGAGGAGGAGAGGC 61.101 65.000 0.00 0.00 0.00 4.70
552 617 2.438614 CCGCGAGAGTGAGGAGGA 60.439 66.667 8.23 0.00 46.66 3.71
603 668 3.760035 GACCTCTGCCGCCTTCGA 61.760 66.667 0.00 0.00 38.10 3.71
606 671 4.400961 GCTGACCTCTGCCGCCTT 62.401 66.667 0.00 0.00 35.17 4.35
623 688 3.891366 GAGAGAAGAGAGAGGATTGGAGG 59.109 52.174 0.00 0.00 0.00 4.30
628 693 2.944129 CCGGAGAGAAGAGAGAGGATT 58.056 52.381 0.00 0.00 0.00 3.01
633 698 2.096248 GAAAGCCGGAGAGAAGAGAGA 58.904 52.381 5.05 0.00 0.00 3.10
644 709 3.771160 GAGAGCGGGAAAGCCGGA 61.771 66.667 5.05 0.00 36.66 5.14
650 715 1.032657 CGAGAGGAGAGAGCGGGAAA 61.033 60.000 0.00 0.00 0.00 3.13
656 721 1.880027 GGAGATTCGAGAGGAGAGAGC 59.120 57.143 0.00 0.00 0.00 4.09
699 767 2.774799 AAAATCAGCCGGGCGCATC 61.775 57.895 14.39 0.00 41.38 3.91
700 768 2.755469 AAAATCAGCCGGGCGCAT 60.755 55.556 14.39 6.65 41.38 4.73
701 769 3.746889 CAAAATCAGCCGGGCGCA 61.747 61.111 14.39 4.17 41.38 6.09
702 770 4.496927 CCAAAATCAGCCGGGCGC 62.497 66.667 14.39 0.00 37.98 6.53
703 771 3.825611 CCCAAAATCAGCCGGGCG 61.826 66.667 14.39 8.94 0.00 6.13
704 772 3.460868 CCCCAAAATCAGCCGGGC 61.461 66.667 12.11 12.11 37.36 6.13
705 773 3.460868 GCCCCAAAATCAGCCGGG 61.461 66.667 2.18 0.00 38.52 5.73
706 774 3.460868 GGCCCCAAAATCAGCCGG 61.461 66.667 0.00 0.00 35.30 6.13
762 830 2.511600 GTCACGCCCCAAGATCCG 60.512 66.667 0.00 0.00 0.00 4.18
792 860 4.390556 CCCCCAAAATCCGCCCCA 62.391 66.667 0.00 0.00 0.00 4.96
818 903 2.506061 CCCCTCAGATCCTCGCCAG 61.506 68.421 0.00 0.00 0.00 4.85
846 931 4.504916 CCTCTGCCTCCTCACGCG 62.505 72.222 3.53 3.53 0.00 6.01
863 948 1.359459 GATGTTGGCGTCGTCTTCCC 61.359 60.000 0.00 0.00 0.00 3.97
866 951 0.317160 TCAGATGTTGGCGTCGTCTT 59.683 50.000 0.00 0.00 35.84 3.01
870 955 2.009108 CCATCAGATGTTGGCGTCG 58.991 57.895 9.64 0.00 35.84 5.12
872 957 3.909662 GCCATCAGATGTTGGCGT 58.090 55.556 16.81 0.00 46.87 5.68
875 960 1.028330 ACGCAGCCATCAGATGTTGG 61.028 55.000 9.64 5.69 37.82 3.77
876 961 0.098200 CACGCAGCCATCAGATGTTG 59.902 55.000 9.64 8.41 0.00 3.33
877 962 1.028330 CCACGCAGCCATCAGATGTT 61.028 55.000 9.64 0.00 0.00 2.71
878 963 1.450848 CCACGCAGCCATCAGATGT 60.451 57.895 9.64 0.00 0.00 3.06
879 964 2.831366 GCCACGCAGCCATCAGATG 61.831 63.158 3.04 3.04 0.00 2.90
881 966 3.258228 AAGCCACGCAGCCATCAGA 62.258 57.895 0.00 0.00 0.00 3.27
882 967 2.749044 AAGCCACGCAGCCATCAG 60.749 61.111 0.00 0.00 0.00 2.90
883 968 3.057548 CAAGCCACGCAGCCATCA 61.058 61.111 0.00 0.00 0.00 3.07
884 969 4.487412 GCAAGCCACGCAGCCATC 62.487 66.667 0.00 0.00 0.00 3.51
888 973 4.099170 CAGAGCAAGCCACGCAGC 62.099 66.667 0.00 0.00 33.32 5.25
889 974 1.374631 TACAGAGCAAGCCACGCAG 60.375 57.895 0.00 0.00 0.00 5.18
890 975 1.667830 GTACAGAGCAAGCCACGCA 60.668 57.895 0.00 0.00 0.00 5.24
891 976 1.374758 AGTACAGAGCAAGCCACGC 60.375 57.895 0.00 0.00 0.00 5.34
892 977 0.038251 TCAGTACAGAGCAAGCCACG 60.038 55.000 0.00 0.00 0.00 4.94
893 978 2.093764 AGATCAGTACAGAGCAAGCCAC 60.094 50.000 6.29 0.00 0.00 5.01
894 979 2.093816 CAGATCAGTACAGAGCAAGCCA 60.094 50.000 6.29 0.00 0.00 4.75
895 980 2.093764 ACAGATCAGTACAGAGCAAGCC 60.094 50.000 6.29 0.00 0.00 4.35
896 981 3.244033 ACAGATCAGTACAGAGCAAGC 57.756 47.619 6.29 0.00 0.00 4.01
897 982 5.070770 AGAACAGATCAGTACAGAGCAAG 57.929 43.478 6.29 0.92 0.00 4.01
898 983 5.712446 ACTAGAACAGATCAGTACAGAGCAA 59.288 40.000 6.29 0.00 0.00 3.91
899 984 5.257262 ACTAGAACAGATCAGTACAGAGCA 58.743 41.667 6.29 0.00 0.00 4.26
900 985 5.828299 ACTAGAACAGATCAGTACAGAGC 57.172 43.478 0.00 0.00 0.00 4.09
901 986 8.902540 AGATACTAGAACAGATCAGTACAGAG 57.097 38.462 0.00 0.00 30.06 3.35
902 987 7.934665 GGAGATACTAGAACAGATCAGTACAGA 59.065 40.741 0.00 0.00 30.06 3.41
919 1004 4.945543 TGTACTTCTGCAACGGAGATACTA 59.054 41.667 0.00 0.00 0.00 1.82
920 1005 3.762288 TGTACTTCTGCAACGGAGATACT 59.238 43.478 0.00 0.00 0.00 2.12
921 1006 4.106029 TGTACTTCTGCAACGGAGATAC 57.894 45.455 0.00 0.00 0.00 2.24
922 1007 4.021807 TGTTGTACTTCTGCAACGGAGATA 60.022 41.667 0.00 0.00 45.54 1.98
923 1008 3.244078 TGTTGTACTTCTGCAACGGAGAT 60.244 43.478 0.00 0.00 45.54 2.75
940 1025 2.159198 CCAGTTTGCTGCTCTTTGTTGT 60.159 45.455 0.00 0.00 41.26 3.32
946 1037 0.892814 GGCTCCAGTTTGCTGCTCTT 60.893 55.000 0.00 0.00 41.26 2.85
947 1038 1.303155 GGCTCCAGTTTGCTGCTCT 60.303 57.895 0.00 0.00 41.26 4.09
954 1045 1.089920 CGAAGGATGGCTCCAGTTTG 58.910 55.000 5.90 0.00 44.79 2.93
957 1048 0.616111 ACTCGAAGGATGGCTCCAGT 60.616 55.000 5.90 0.00 44.79 4.00
959 1050 0.324738 AGACTCGAAGGATGGCTCCA 60.325 55.000 5.90 0.00 44.79 3.86
984 1076 1.202510 GCCATGGCAGTCTACTCAGAG 60.203 57.143 32.08 0.00 41.49 3.35
986 1078 0.529337 CGCCATGGCAGTCTACTCAG 60.529 60.000 34.93 11.86 42.06 3.35
989 1081 2.187946 GCGCCATGGCAGTCTACT 59.812 61.111 34.93 0.00 42.06 2.57
991 1083 2.187685 CAGCGCCATGGCAGTCTA 59.812 61.111 34.93 0.00 42.06 2.59
1115 1207 2.831333 CAAGTTGCTCACACTCACTCT 58.169 47.619 0.00 0.00 0.00 3.24
1251 1350 2.930019 CTCCCCTGGCAGGACACA 60.930 66.667 34.84 13.61 37.67 3.72
1290 1389 4.175337 GCCGTCCTGCCAGCCATA 62.175 66.667 0.00 0.00 0.00 2.74
1326 1433 3.449018 GGTAGGAGTCAATCTTGCTCTGA 59.551 47.826 11.45 0.00 34.22 3.27
1338 1445 4.387664 GGGAAGAGGATTAGGTAGGAGTCA 60.388 50.000 0.00 0.00 0.00 3.41
1350 1464 1.765314 CTGATCACCGGGAAGAGGATT 59.235 52.381 6.32 0.00 0.00 3.01
1471 1600 3.455990 TGAAGTTGTACGTACCTGCAA 57.544 42.857 22.43 7.70 0.00 4.08
1490 1623 4.271049 AGGTCGAGCGATCAATTTGTATTG 59.729 41.667 9.28 0.00 42.06 1.90
1508 1641 1.336702 GCATATCCTCTCAGCAGGTCG 60.337 57.143 0.00 0.00 34.76 4.79
1510 1643 1.693062 CAGCATATCCTCTCAGCAGGT 59.307 52.381 0.00 0.00 34.76 4.00
1511 1644 1.969208 TCAGCATATCCTCTCAGCAGG 59.031 52.381 0.00 0.00 34.40 4.85
1513 1646 4.701651 ATTTCAGCATATCCTCTCAGCA 57.298 40.909 0.00 0.00 0.00 4.41
1514 1647 5.061853 TCAATTTCAGCATATCCTCTCAGC 58.938 41.667 0.00 0.00 0.00 4.26
1515 1648 8.095792 AGTATCAATTTCAGCATATCCTCTCAG 58.904 37.037 0.00 0.00 0.00 3.35
1516 1649 7.876582 CAGTATCAATTTCAGCATATCCTCTCA 59.123 37.037 0.00 0.00 0.00 3.27
1518 1651 7.877097 GTCAGTATCAATTTCAGCATATCCTCT 59.123 37.037 0.00 0.00 0.00 3.69
1520 1653 6.648310 CGTCAGTATCAATTTCAGCATATCCT 59.352 38.462 0.00 0.00 0.00 3.24
1521 1654 6.128445 CCGTCAGTATCAATTTCAGCATATCC 60.128 42.308 0.00 0.00 0.00 2.59
1522 1655 6.619446 GCCGTCAGTATCAATTTCAGCATATC 60.619 42.308 0.00 0.00 0.00 1.63
1523 1656 5.180117 GCCGTCAGTATCAATTTCAGCATAT 59.820 40.000 0.00 0.00 0.00 1.78
1524 1657 4.511454 GCCGTCAGTATCAATTTCAGCATA 59.489 41.667 0.00 0.00 0.00 3.14
1525 1658 3.313526 GCCGTCAGTATCAATTTCAGCAT 59.686 43.478 0.00 0.00 0.00 3.79
1526 1659 2.677836 GCCGTCAGTATCAATTTCAGCA 59.322 45.455 0.00 0.00 0.00 4.41
1527 1660 2.939103 AGCCGTCAGTATCAATTTCAGC 59.061 45.455 0.00 0.00 0.00 4.26
1528 1661 3.243877 CGAGCCGTCAGTATCAATTTCAG 59.756 47.826 0.00 0.00 0.00 3.02
1529 1662 3.186909 CGAGCCGTCAGTATCAATTTCA 58.813 45.455 0.00 0.00 0.00 2.69
1530 1663 2.540101 CCGAGCCGTCAGTATCAATTTC 59.460 50.000 0.00 0.00 0.00 2.17
1531 1664 2.550978 CCGAGCCGTCAGTATCAATTT 58.449 47.619 0.00 0.00 0.00 1.82
1532 1665 1.202533 CCCGAGCCGTCAGTATCAATT 60.203 52.381 0.00 0.00 0.00 2.32
1540 1673 1.227089 CTTCATCCCGAGCCGTCAG 60.227 63.158 0.00 0.00 0.00 3.51
1544 1677 1.364171 CTACCTTCATCCCGAGCCG 59.636 63.158 0.00 0.00 0.00 5.52
1547 1680 3.552875 TCAGTACTACCTTCATCCCGAG 58.447 50.000 0.00 0.00 0.00 4.63
1551 1838 7.331791 ACAAGATTTCAGTACTACCTTCATCC 58.668 38.462 0.00 0.00 0.00 3.51
1568 1855 2.878526 GCACCCCCTTCGTACAAGATTT 60.879 50.000 6.62 0.00 0.00 2.17
1589 1896 1.016130 AGAAATGAGCAGTGACCGCG 61.016 55.000 0.00 0.00 0.00 6.46
1607 1993 4.314121 CAGACTCCTGAAAAAGAGACCAG 58.686 47.826 0.00 0.00 43.02 4.00
1629 2015 1.376037 CCTCCTGAACAACCTCCGC 60.376 63.158 0.00 0.00 0.00 5.54
1653 2937 2.038426 TGAACTCCTTGATTCCTTGCGA 59.962 45.455 0.00 0.00 0.00 5.10
1663 3265 0.878523 CGCCAACGTGAACTCCTTGA 60.879 55.000 0.00 0.00 33.53 3.02
1703 3309 1.686355 TTGTGTCATGGGCGAAGTTT 58.314 45.000 0.00 0.00 0.00 2.66
1727 3350 2.828549 CCATGGCTGCCGTAACCC 60.829 66.667 14.07 0.00 0.00 4.11
1740 3363 0.255890 CCCCTGTACACCCTTCCATG 59.744 60.000 0.00 0.00 0.00 3.66
1741 3364 0.919289 CCCCCTGTACACCCTTCCAT 60.919 60.000 0.00 0.00 0.00 3.41
1760 3386 0.526524 CTCGTCCATCGTGAAGCCTC 60.527 60.000 0.00 0.00 40.80 4.70
1793 3419 3.120199 GCTGTATGTTTTCTGACATGCGT 60.120 43.478 0.00 0.00 43.05 5.24
1838 3500 2.547026 TAGCTGTGCTACGACGTCA 58.453 52.632 17.16 0.00 40.44 4.35
1938 3657 3.441222 TCGTACACGATCAGCCTTTCTAA 59.559 43.478 0.00 0.00 44.22 2.10
1939 3658 3.011818 TCGTACACGATCAGCCTTTCTA 58.988 45.455 0.00 0.00 44.22 2.10
1955 3674 3.181479 TGCCATTCTCCATGTACTCGTAC 60.181 47.826 0.35 0.35 36.63 3.67
2174 3902 5.068855 TGACAAGCCAAAATCTGAAACATGA 59.931 36.000 0.00 0.00 0.00 3.07
2412 4171 2.919043 GGCCTCAATGACGGGGAT 59.081 61.111 0.00 0.00 0.00 3.85
2418 4177 3.882888 TCAATATTTCCGGCCTCAATGAC 59.117 43.478 0.00 0.00 0.00 3.06
2432 4191 7.563906 GCCTATCTAGCATCTCCTCAATATTT 58.436 38.462 0.00 0.00 0.00 1.40
2834 6704 2.599597 CCAAGGCCCATCCTCCAG 59.400 66.667 0.00 0.00 46.94 3.86
2851 6721 1.875963 CACCTTGGACGATTGGTGC 59.124 57.895 0.00 0.00 42.55 5.01
2903 6773 1.167851 ATGTGATTGACGGCCACTTG 58.832 50.000 2.24 0.00 0.00 3.16
2925 6795 3.740128 ATGATGCTCGTCGGGTGGC 62.740 63.158 0.00 0.00 0.00 5.01
2955 6836 2.159085 GCCTGCAGATTACTAGAACCGT 60.159 50.000 17.39 0.00 0.00 4.83
3041 8256 5.070446 GGTTCTGGGATTCAAAAGAAAAGGT 59.930 40.000 0.00 0.00 30.85 3.50
3043 8258 6.160576 TGGTTCTGGGATTCAAAAGAAAAG 57.839 37.500 0.00 0.00 30.85 2.27
3056 8272 3.591527 ACAATTGGTCTATGGTTCTGGGA 59.408 43.478 10.83 0.00 0.00 4.37
3066 8282 6.524101 AATGCCGTAAAACAATTGGTCTAT 57.476 33.333 10.83 0.00 0.00 1.98
3071 8287 5.914085 TGAAAATGCCGTAAAACAATTGG 57.086 34.783 10.83 0.00 0.00 3.16
3193 8409 6.814644 TGTCCACAGTACCAACTTTATTATCG 59.185 38.462 0.00 0.00 31.97 2.92
3261 8477 1.552578 ACTATGGCCACGACACTACA 58.447 50.000 8.16 0.00 0.00 2.74
3272 8488 3.560636 TCAGGCTTCTAAACTATGGCC 57.439 47.619 0.00 0.00 39.82 5.36
3320 8537 3.643763 ACAAGACTGCAACTCTTCTACG 58.356 45.455 3.74 0.00 0.00 3.51
3350 8621 3.376546 CCTGCTTATTGAGGTTTCTGAGC 59.623 47.826 0.00 0.00 0.00 4.26
3360 8631 3.004106 GCCAACTATGCCTGCTTATTGAG 59.996 47.826 0.00 0.00 0.00 3.02
3362 8633 2.954318 AGCCAACTATGCCTGCTTATTG 59.046 45.455 0.00 0.00 0.00 1.90
3489 8765 4.095782 GCACCAGCACCGATTTCTTATTTA 59.904 41.667 0.00 0.00 41.58 1.40
3493 8772 1.448985 GCACCAGCACCGATTTCTTA 58.551 50.000 0.00 0.00 41.58 2.10
3496 8775 2.032634 TCGCACCAGCACCGATTTC 61.033 57.895 0.00 0.00 42.27 2.17
3589 8868 1.766461 ACGCCCATCTCCCCCTTAG 60.766 63.158 0.00 0.00 0.00 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.