Multiple sequence alignment - TraesCS2D01G062000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G062000 chr2D 100.000 4438 0 0 1 4438 26347126 26342689 0.000000e+00 8196.0
1 TraesCS2D01G062000 chr2D 80.177 903 92 54 709 1580 26471195 26470349 2.960000e-166 595.0
2 TraesCS2D01G062000 chr2D 86.349 315 35 5 315 624 26456861 26456550 1.980000e-88 337.0
3 TraesCS2D01G062000 chr2D 79.630 270 38 13 3471 3737 25654757 25655012 1.270000e-40 178.0
4 TraesCS2D01G062000 chr2D 88.235 136 15 1 487 622 26346497 26346363 1.280000e-35 161.0
5 TraesCS2D01G062000 chr2D 88.235 136 15 1 630 764 26346640 26346505 1.280000e-35 161.0
6 TraesCS2D01G062000 chr2D 85.366 123 17 1 1897 2018 26422564 26422442 4.660000e-25 126.0
7 TraesCS2D01G062000 chr2D 86.598 97 10 3 3642 3737 25746675 25746581 2.180000e-18 104.0
8 TraesCS2D01G062000 chr2D 77.600 125 22 5 709 830 26459412 26459291 2.210000e-08 71.3
9 TraesCS2D01G062000 chr2A 86.748 1147 92 35 630 1740 28659793 28658671 0.000000e+00 1221.0
10 TraesCS2D01G062000 chr2A 88.501 774 64 8 1 757 28661934 28661169 0.000000e+00 913.0
11 TraesCS2D01G062000 chr2A 91.220 615 40 5 2187 2787 28658035 28657421 0.000000e+00 824.0
12 TraesCS2D01G062000 chr2A 91.326 611 36 7 2828 3424 28657305 28656698 0.000000e+00 819.0
13 TraesCS2D01G062000 chr2A 91.280 539 35 5 3619 4146 28562197 28561660 0.000000e+00 725.0
14 TraesCS2D01G062000 chr2A 79.979 944 129 28 487 1394 28661295 28660376 3.740000e-180 641.0
15 TraesCS2D01G062000 chr2A 81.493 643 84 12 8 624 28664039 28663406 3.080000e-136 496.0
16 TraesCS2D01G062000 chr2A 83.367 493 59 13 1898 2367 28658532 28658040 6.820000e-118 435.0
17 TraesCS2D01G062000 chr2A 84.000 350 32 14 1039 1387 28694892 28694566 9.270000e-82 315.0
18 TraesCS2D01G062000 chr2A 92.308 208 10 1 3419 3626 28656613 28656412 1.560000e-74 291.0
19 TraesCS2D01G062000 chr2A 83.660 306 31 9 4149 4438 28140054 28139752 2.030000e-68 270.0
20 TraesCS2D01G062000 chr2A 78.198 344 46 16 3417 3737 28142621 28142284 4.530000e-45 193.0
21 TraesCS2D01G062000 chr2A 84.536 194 27 3 630 823 28663541 28663351 5.860000e-44 189.0
22 TraesCS2D01G062000 chr2A 80.784 255 36 7 3484 3727 28209519 28209267 2.110000e-43 187.0
23 TraesCS2D01G062000 chr2A 93.333 120 8 0 4145 4264 28561040 28560921 1.270000e-40 178.0
24 TraesCS2D01G062000 chr2A 84.672 137 14 5 630 764 28661433 28661302 3.600000e-26 130.0
25 TraesCS2D01G062000 chr2A 91.209 91 4 4 1386 1473 28693998 28693909 2.170000e-23 121.0
26 TraesCS2D01G062000 chr2A 75.460 163 21 14 712 870 28683271 28683124 1.330000e-05 62.1
27 TraesCS2D01G062000 chr2A 92.857 42 2 1 785 826 28703921 28703881 4.790000e-05 60.2
28 TraesCS2D01G062000 chr2A 86.792 53 4 3 769 820 28684130 28684080 6.200000e-04 56.5
29 TraesCS2D01G062000 chr2B 88.681 857 74 11 1950 2784 41437998 41438853 0.000000e+00 1024.0
30 TraesCS2D01G062000 chr2B 92.098 734 42 5 3419 4145 41439682 41440406 0.000000e+00 1020.0
31 TraesCS2D01G062000 chr2B 87.030 825 73 24 718 1519 41437046 41437859 0.000000e+00 900.0
32 TraesCS2D01G062000 chr2B 85.942 626 55 20 2828 3424 41438975 41439596 4.840000e-179 638.0
33 TraesCS2D01G062000 chr2B 83.250 603 61 27 986 1580 41416218 41416788 6.580000e-143 518.0
34 TraesCS2D01G062000 chr2B 92.256 297 19 3 4145 4438 41441035 41441330 6.870000e-113 418.0
35 TraesCS2D01G062000 chr2B 78.819 491 65 16 81 539 41436562 41437045 1.210000e-75 294.0
36 TraesCS2D01G062000 chr2B 82.101 257 31 10 3480 3722 41542509 41542764 5.820000e-49 206.0
37 TraesCS2D01G062000 chr2B 93.878 49 3 0 1886 1934 41437952 41438000 1.710000e-09 75.0
38 TraesCS2D01G062000 chr1A 89.761 293 29 1 4147 4438 430535550 430535258 1.510000e-99 374.0
39 TraesCS2D01G062000 chr5B 88.000 50 5 1 769 818 626498860 626498812 1.720000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G062000 chr2D 26342689 26347126 4437 True 2839.333333 8196 92.156667 1 4438 3 chr2D.!!$R4 4437
1 TraesCS2D01G062000 chr2D 26470349 26471195 846 True 595.000000 595 80.177000 709 1580 1 chr2D.!!$R3 871
2 TraesCS2D01G062000 chr2D 26456550 26459412 2862 True 204.150000 337 81.974500 315 830 2 chr2D.!!$R5 515
3 TraesCS2D01G062000 chr2A 28656412 28664039 7627 True 595.900000 1221 86.415000 1 3626 10 chr2A.!!$R5 3625
4 TraesCS2D01G062000 chr2A 28560921 28562197 1276 True 451.500000 725 92.306500 3619 4264 2 chr2A.!!$R4 645
5 TraesCS2D01G062000 chr2A 28139752 28142621 2869 True 231.500000 270 80.929000 3417 4438 2 chr2A.!!$R3 1021
6 TraesCS2D01G062000 chr2A 28693909 28694892 983 True 218.000000 315 87.604500 1039 1473 2 chr2A.!!$R7 434
7 TraesCS2D01G062000 chr2B 41436562 41441330 4768 False 624.142857 1024 88.386286 81 4438 7 chr2B.!!$F3 4357
8 TraesCS2D01G062000 chr2B 41416218 41416788 570 False 518.000000 518 83.250000 986 1580 1 chr2B.!!$F1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
240 2347 1.079127 GTACATGTGGTCGCCAGCT 60.079 57.895 9.11 0.0 32.34 4.24 F
1655 6152 0.317436 CCATAGCGTCGAGAGTGCTC 60.317 60.000 0.00 0.0 42.18 4.26 F
2133 6732 0.393944 TACCACCTGACGAGAGCGAT 60.394 55.000 0.00 0.0 41.64 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 6312 0.037232 CTCCTTCACCTTCCGTGGAC 60.037 60.000 0.0 0.0 43.23 4.02 R
2458 7563 1.067821 CCGAGAATAGACACAGGCCTC 59.932 57.143 0.0 0.0 0.00 4.70 R
3846 9235 0.038455 AGTACAGAGGGAGAGCACGT 59.962 55.000 0.0 0.0 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 2149 4.599041 TGGATCCGGTTCAGAATTTTGAT 58.401 39.130 14.36 0.00 0.00 2.57
58 2164 9.005777 CAGAATTTTGATTGGGTCAATGATTTT 57.994 29.630 0.00 0.00 45.77 1.82
64 2170 7.006865 TGATTGGGTCAATGATTTTGATTGT 57.993 32.000 0.00 0.00 33.90 2.71
65 2171 6.874664 TGATTGGGTCAATGATTTTGATTGTG 59.125 34.615 0.00 0.00 33.90 3.33
82 2188 8.600449 TTGATTGTGGTGTTTAATTTTGGATC 57.400 30.769 0.00 0.00 0.00 3.36
173 2280 4.373116 TCCCGCGCAACCTCTCAC 62.373 66.667 8.75 0.00 0.00 3.51
190 2297 1.962807 TCACCACCTGGCAAAAATGAG 59.037 47.619 0.00 0.00 39.32 2.90
240 2347 1.079127 GTACATGTGGTCGCCAGCT 60.079 57.895 9.11 0.00 32.34 4.24
277 2384 1.999048 TACGTGTGGGTTGATTAGCG 58.001 50.000 0.00 0.00 0.00 4.26
297 2419 3.808618 GCGGATATTCAAGAAGAGCCCAT 60.809 47.826 6.19 0.00 34.85 4.00
376 2530 6.363882 TCCATTATGATATTCCAACAGCACA 58.636 36.000 0.00 0.00 0.00 4.57
381 2535 4.793071 TGATATTCCAACAGCACAAAACG 58.207 39.130 0.00 0.00 0.00 3.60
531 2685 5.126061 GCATAGGTGAAACATTGAAGGACAT 59.874 40.000 0.00 0.00 39.98 3.06
571 2725 8.709308 AGTCATGATAAGCATTATATAGGACCC 58.291 37.037 0.00 0.00 42.35 4.46
613 2908 7.777440 TCACACATATAAATAAGCATTGGACCA 59.223 33.333 0.00 0.00 0.00 4.02
615 2910 7.559533 ACACATATAAATAAGCATTGGACCACA 59.440 33.333 0.00 0.00 0.00 4.17
618 2913 2.897271 ATAAGCATTGGACCACACCA 57.103 45.000 0.00 0.00 38.24 4.17
630 2925 4.202202 TGGACCACACCAAAAATTGATGTC 60.202 41.667 0.00 0.00 36.96 3.06
668 2963 6.530019 AAAAGCATAGGTGGAACATTTAGG 57.470 37.500 0.00 0.00 44.52 2.69
673 2968 3.434940 AGGTGGAACATTTAGGGACAC 57.565 47.619 0.00 0.00 44.52 3.67
674 2969 2.041216 AGGTGGAACATTTAGGGACACC 59.959 50.000 0.00 0.00 44.52 4.16
677 2972 4.079958 GGTGGAACATTTAGGGACACCTAT 60.080 45.833 0.00 0.00 45.46 2.57
700 2995 5.439721 TGTCCATTGAAGTCATGATAAGGG 58.560 41.667 0.00 4.18 0.00 3.95
703 2998 5.887598 TCCATTGAAGTCATGATAAGGGTTG 59.112 40.000 0.00 0.00 0.00 3.77
747 3042 7.463544 TGACATTTCACACATATAAAGAAGCG 58.536 34.615 0.00 0.00 0.00 4.68
751 3046 5.216566 TCACACATATAAAGAAGCGTTGC 57.783 39.130 0.00 0.00 0.00 4.17
755 3050 3.063452 ACATATAAAGAAGCGTTGCACCG 59.937 43.478 0.00 0.00 0.00 4.94
765 3061 1.608093 CGTTGCACCGCATCAAAAGC 61.608 55.000 0.00 0.00 38.76 3.51
772 3068 2.801679 CACCGCATCAAAAGCAACATTT 59.198 40.909 0.00 0.00 0.00 2.32
839 3136 2.582636 ACTTAGGAGAAACATGGGCCAT 59.417 45.455 14.78 14.78 0.00 4.40
903 3303 1.260297 GCAACACGGTTGCAAATTTCC 59.740 47.619 26.54 0.00 44.34 3.13
979 4813 2.267642 CGGCGGTGGATTCCTCAA 59.732 61.111 0.00 0.00 0.00 3.02
984 4818 1.442769 CGGTGGATTCCTCAACACAG 58.557 55.000 3.95 0.00 35.62 3.66
988 4822 2.932614 GTGGATTCCTCAACACAGATCG 59.067 50.000 3.95 0.00 34.16 3.69
1021 4855 2.656422 GTGGATTTCGCAACACAAATCG 59.344 45.455 0.00 0.00 39.12 3.34
1160 5004 2.249413 CTTCCTCTGGATGCCGCTGT 62.249 60.000 0.00 0.00 0.00 4.40
1161 5005 2.513204 CCTCTGGATGCCGCTGTG 60.513 66.667 0.00 0.00 0.00 3.66
1163 5007 2.046988 TCTGGATGCCGCTGTGTG 60.047 61.111 0.00 0.00 0.00 3.82
1164 5008 3.807538 CTGGATGCCGCTGTGTGC 61.808 66.667 0.00 0.00 38.57 4.57
1249 5105 1.649664 CATGAGGAACAGAGGAAGCG 58.350 55.000 0.00 0.00 0.00 4.68
1460 5918 3.083997 GGTGGAGAGGTGGGCGAT 61.084 66.667 0.00 0.00 0.00 4.58
1582 6064 3.081804 GGGGAATTTCAGAGAAAAGCGA 58.918 45.455 0.00 0.00 0.00 4.93
1583 6065 3.119814 GGGGAATTTCAGAGAAAAGCGAC 60.120 47.826 0.00 0.00 0.00 5.19
1585 6067 2.882742 ATTTCAGAGAAAAGCGACGC 57.117 45.000 13.03 13.03 0.00 5.19
1654 6151 0.748367 TCCATAGCGTCGAGAGTGCT 60.748 55.000 0.00 6.62 43.82 4.40
1655 6152 0.317436 CCATAGCGTCGAGAGTGCTC 60.317 60.000 0.00 0.00 42.18 4.26
1657 6154 0.660488 ATAGCGTCGAGAGTGCTCTG 59.340 55.000 6.43 0.15 42.18 3.35
1658 6155 1.983196 TAGCGTCGAGAGTGCTCTGC 61.983 60.000 6.43 4.02 42.18 4.26
1659 6156 2.874019 CGTCGAGAGTGCTCTGCT 59.126 61.111 6.43 0.00 40.61 4.24
1660 6157 1.226267 CGTCGAGAGTGCTCTGCTC 60.226 63.158 6.43 0.00 40.61 4.26
1717 6214 5.049167 CAGTGAGCATTCTGAGATAACCTC 58.951 45.833 0.00 0.00 42.30 3.85
1740 6285 3.872603 AATATGCGGAGGCGGCCA 61.873 61.111 23.09 0.00 44.10 5.36
1741 6286 4.626081 ATATGCGGAGGCGGCCAC 62.626 66.667 23.09 15.59 44.10 5.01
1769 6314 2.509336 CGTGATGGACGGCTGGTC 60.509 66.667 0.00 0.00 44.85 4.02
1776 6321 3.998672 GACGGCTGGTCCACGGAA 61.999 66.667 6.81 0.00 39.90 4.30
1777 6322 3.934391 GACGGCTGGTCCACGGAAG 62.934 68.421 6.81 0.00 39.90 3.46
1778 6323 4.760047 CGGCTGGTCCACGGAAGG 62.760 72.222 0.00 0.00 34.01 3.46
1779 6324 3.637273 GGCTGGTCCACGGAAGGT 61.637 66.667 0.00 0.00 34.01 3.50
1780 6325 2.358737 GCTGGTCCACGGAAGGTG 60.359 66.667 0.00 0.00 46.57 4.00
1795 6340 3.601435 GAAGGTGAAGGAGTAGGCTTTC 58.399 50.000 0.00 0.00 0.00 2.62
1801 6346 0.820871 AGGAGTAGGCTTTCGAGCAG 59.179 55.000 0.00 0.00 36.33 4.24
1807 6352 1.230324 AGGCTTTCGAGCAGAAACAC 58.770 50.000 3.66 1.17 43.35 3.32
1848 6406 2.100631 CACGGCCGGAATGTCAGAC 61.101 63.158 31.76 0.00 0.00 3.51
1935 6516 5.003804 ACCAAGACAATCTGGACACAATAC 58.996 41.667 0.00 0.00 0.00 1.89
1952 6533 2.036958 TACGGGTCCATGAGCAAATG 57.963 50.000 0.00 0.00 0.00 2.32
1963 6544 3.235157 TGAGCAAATGTGGCTTAATGC 57.765 42.857 0.00 0.00 42.78 3.56
2014 6595 1.944709 GACACAACGGTTAGGCAGTTT 59.055 47.619 0.00 0.00 33.32 2.66
2019 6600 3.004315 ACAACGGTTAGGCAGTTTCATTG 59.996 43.478 0.00 0.00 33.32 2.82
2020 6601 1.539827 ACGGTTAGGCAGTTTCATTGC 59.460 47.619 0.00 0.00 40.80 3.56
2130 6729 0.452585 GAGTACCACCTGACGAGAGC 59.547 60.000 0.00 0.00 0.00 4.09
2133 6732 0.393944 TACCACCTGACGAGAGCGAT 60.394 55.000 0.00 0.00 41.64 4.58
2179 6910 5.163814 GCGATGCTTCTCTGAACTTTGTTAT 60.164 40.000 0.00 0.00 0.00 1.89
2184 6915 8.621532 TGCTTCTCTGAACTTTGTTATAACAT 57.378 30.769 18.69 4.15 38.95 2.71
2185 6916 8.721478 TGCTTCTCTGAACTTTGTTATAACATC 58.279 33.333 18.69 13.34 38.95 3.06
2232 7154 7.465513 CGATGCTAGTTTACATAGGAAACCAAC 60.466 40.741 1.40 0.00 37.48 3.77
2257 7187 4.381932 GCATCTATGGTTTCAGGTTTTGGG 60.382 45.833 0.00 0.00 0.00 4.12
2277 7207 0.482446 TCCAATGGAGGCCAACTTGT 59.518 50.000 5.01 0.00 36.95 3.16
2285 7221 0.842467 AGGCCAACTTGTAGCTCCCT 60.842 55.000 5.01 0.00 0.00 4.20
2287 7223 1.490910 GGCCAACTTGTAGCTCCCTAT 59.509 52.381 0.00 0.00 0.00 2.57
2292 7228 4.080863 CCAACTTGTAGCTCCCTATTGTCT 60.081 45.833 0.00 0.00 0.00 3.41
2318 7254 2.976350 ACGACGAGACGCCAGACA 60.976 61.111 0.00 0.00 36.70 3.41
2465 7570 1.259840 CCATTTTGGGGTGAGGCCTG 61.260 60.000 12.00 0.00 37.43 4.85
2495 7600 4.975631 TCTCGGGTGGAAATTCAAACTAA 58.024 39.130 0.00 0.00 0.00 2.24
2517 7628 8.424918 ACTAATTATCTTGCACATGTAGCTAGT 58.575 33.333 21.16 14.46 36.46 2.57
2705 7817 2.452813 CGTCGAAGATTGCGGGGTG 61.453 63.158 0.00 0.00 40.67 4.61
2719 7831 4.250305 GGTGGCACGGTGGTCTGT 62.250 66.667 12.17 0.00 0.00 3.41
2756 7868 2.697992 TTCCAACGTCGGTCCGAACC 62.698 60.000 17.32 3.39 42.66 3.62
2779 7891 3.440522 GTGGGCAATCTCAAGGTAAAGTC 59.559 47.826 0.00 0.00 0.00 3.01
2804 8012 4.236147 GTTGTTCTTACCTTCTCTCGTCC 58.764 47.826 0.00 0.00 0.00 4.79
2805 8013 2.824341 TGTTCTTACCTTCTCTCGTCCC 59.176 50.000 0.00 0.00 0.00 4.46
2807 8015 1.112950 CTTACCTTCTCTCGTCCCCC 58.887 60.000 0.00 0.00 0.00 5.40
2809 8017 0.258194 TACCTTCTCTCGTCCCCCTC 59.742 60.000 0.00 0.00 0.00 4.30
2811 8019 0.551879 CCTTCTCTCGTCCCCCTCTA 59.448 60.000 0.00 0.00 0.00 2.43
2813 8021 2.425102 CCTTCTCTCGTCCCCCTCTAAT 60.425 54.545 0.00 0.00 0.00 1.73
2815 8023 4.471548 CTTCTCTCGTCCCCCTCTAATTA 58.528 47.826 0.00 0.00 0.00 1.40
2816 8024 4.743705 TCTCTCGTCCCCCTCTAATTAT 57.256 45.455 0.00 0.00 0.00 1.28
2817 8025 5.076057 TCTCTCGTCCCCCTCTAATTATT 57.924 43.478 0.00 0.00 0.00 1.40
2819 8027 5.903589 TCTCTCGTCCCCCTCTAATTATTTT 59.096 40.000 0.00 0.00 0.00 1.82
2820 8028 6.041751 TCTCTCGTCCCCCTCTAATTATTTTC 59.958 42.308 0.00 0.00 0.00 2.29
2821 8029 5.903589 TCTCGTCCCCCTCTAATTATTTTCT 59.096 40.000 0.00 0.00 0.00 2.52
2822 8030 6.041751 TCTCGTCCCCCTCTAATTATTTTCTC 59.958 42.308 0.00 0.00 0.00 2.87
2823 8031 5.903589 TCGTCCCCCTCTAATTATTTTCTCT 59.096 40.000 0.00 0.00 0.00 3.10
2824 8032 6.041751 TCGTCCCCCTCTAATTATTTTCTCTC 59.958 42.308 0.00 0.00 0.00 3.20
2825 8033 6.224584 GTCCCCCTCTAATTATTTTCTCTCG 58.775 44.000 0.00 0.00 0.00 4.04
2875 8083 2.423538 GCCACTAACACCAATCCATCAC 59.576 50.000 0.00 0.00 0.00 3.06
2885 8093 6.512297 ACACCAATCCATCACTTTGTTTAAC 58.488 36.000 0.00 0.00 0.00 2.01
3046 8274 4.874966 GCTATCTGCATCTTGACAAGAAGT 59.125 41.667 21.29 3.72 41.63 3.01
3057 8285 3.057019 TGACAAGAAGTTGATCGAACGG 58.943 45.455 0.00 0.00 39.80 4.44
3073 8301 0.323725 ACGGATCCAAAAGGCAGCAT 60.324 50.000 13.41 0.00 0.00 3.79
3090 8318 2.088423 GCATTCAACAACCCGTATCCA 58.912 47.619 0.00 0.00 0.00 3.41
3105 8333 1.047801 ATCCAAAACCAAGGTGCACC 58.952 50.000 29.22 29.22 0.00 5.01
3108 8336 0.248866 CAAAACCAAGGTGCACCGAC 60.249 55.000 29.68 6.87 42.08 4.79
3114 8342 1.671054 AAGGTGCACCGACGAATGG 60.671 57.895 29.68 0.00 42.08 3.16
3120 8348 4.107029 ACCGACGAATGGTGAGGA 57.893 55.556 0.00 0.00 38.60 3.71
3152 8381 9.126151 TGTTTAGGACTTTTTACATTGTGATGA 57.874 29.630 0.00 0.00 36.73 2.92
3183 8412 8.035394 CCTTGTAAAGCACTCTCTTACTAATGA 58.965 37.037 0.00 0.00 44.44 2.57
3221 8460 1.621672 GCTGCCTAGGTCTCCTGCTT 61.622 60.000 11.31 0.00 34.61 3.91
3232 8471 4.221041 AGGTCTCCTGCTTCAGTTTAGTAC 59.779 45.833 0.00 0.00 29.57 2.73
3263 8502 8.568676 TGTTAAGCTAACAATATTTGTAGGCA 57.431 30.769 14.96 0.13 44.95 4.75
3314 8554 2.766263 TCTATGTGTGCCTACCTTCCTG 59.234 50.000 0.00 0.00 0.00 3.86
3315 8555 1.656587 ATGTGTGCCTACCTTCCTGA 58.343 50.000 0.00 0.00 0.00 3.86
3317 8557 1.985159 TGTGTGCCTACCTTCCTGATT 59.015 47.619 0.00 0.00 0.00 2.57
3318 8558 2.290260 TGTGTGCCTACCTTCCTGATTG 60.290 50.000 0.00 0.00 0.00 2.67
3320 8560 2.290260 TGTGCCTACCTTCCTGATTGTG 60.290 50.000 0.00 0.00 0.00 3.33
3323 8563 2.027192 GCCTACCTTCCTGATTGTGTGA 60.027 50.000 0.00 0.00 0.00 3.58
3326 8566 4.637534 CCTACCTTCCTGATTGTGTGATTG 59.362 45.833 0.00 0.00 0.00 2.67
3331 8576 3.148412 TCCTGATTGTGTGATTGTGTGG 58.852 45.455 0.00 0.00 0.00 4.17
3343 8588 4.806247 GTGATTGTGTGGTACTATGCTCTC 59.194 45.833 0.00 0.00 0.00 3.20
3355 8600 5.611128 ACTATGCTCTCTGATTGTGTGAT 57.389 39.130 0.00 0.00 0.00 3.06
3360 8605 5.798132 TGCTCTCTGATTGTGTGATAACTT 58.202 37.500 0.00 0.00 0.00 2.66
3368 8613 9.154847 TCTGATTGTGTGATAACTTTACAGATG 57.845 33.333 0.00 0.00 0.00 2.90
3410 8656 6.459573 GCTTGAGTTGGTGAAAACTGAATGTA 60.460 38.462 0.00 0.00 40.48 2.29
3472 8816 7.765695 TTTCAAATATATTCTGCCCATCTCC 57.234 36.000 0.00 0.00 0.00 3.71
3538 8886 8.087750 GTCCAACATAAATCATCCAAAGAAACA 58.912 33.333 0.00 0.00 0.00 2.83
3557 8905 5.947228 AACAAGTCATCATACACCAACTG 57.053 39.130 0.00 0.00 0.00 3.16
3608 8956 1.667724 GCCCTCAATCACAAGATCACG 59.332 52.381 0.00 0.00 31.90 4.35
3846 9235 8.820933 GTCTTCAATCAACATCTCATCGAAATA 58.179 33.333 0.00 0.00 0.00 1.40
3847 9236 8.820933 TCTTCAATCAACATCTCATCGAAATAC 58.179 33.333 0.00 0.00 0.00 1.89
3848 9237 7.165427 TCAATCAACATCTCATCGAAATACG 57.835 36.000 0.00 0.00 44.09 3.06
3849 9238 6.756542 TCAATCAACATCTCATCGAAATACGT 59.243 34.615 0.00 0.00 43.13 3.57
3850 9239 5.949233 TCAACATCTCATCGAAATACGTG 57.051 39.130 0.00 0.00 43.13 4.49
3851 9240 4.267690 TCAACATCTCATCGAAATACGTGC 59.732 41.667 0.00 0.00 43.13 5.34
3852 9241 4.046938 ACATCTCATCGAAATACGTGCT 57.953 40.909 0.00 0.00 43.13 4.40
3853 9242 4.045104 ACATCTCATCGAAATACGTGCTC 58.955 43.478 0.00 0.00 43.13 4.26
3854 9243 4.202060 ACATCTCATCGAAATACGTGCTCT 60.202 41.667 0.00 0.00 43.13 4.09
3867 9256 1.133407 CGTGCTCTCCCTCTGTACTTC 59.867 57.143 0.00 0.00 0.00 3.01
3993 9391 2.638480 TCCTTCTTCACCACCACAAG 57.362 50.000 0.00 0.00 0.00 3.16
4017 9415 1.283613 ACCCAACAGGAGAACAACACA 59.716 47.619 0.00 0.00 39.89 3.72
4027 9425 0.179067 GAACAACACAGACCGACCCA 60.179 55.000 0.00 0.00 0.00 4.51
4049 9447 6.459923 CCAGACCCTAGCTCTGTTTATTATC 58.540 44.000 12.36 0.00 34.42 1.75
4084 9482 6.150976 TCAGTTTTCTTCTGTGTTGTCATGTT 59.849 34.615 0.00 0.00 34.86 2.71
4092 9543 6.266168 TCTGTGTTGTCATGTTGTTTCTTT 57.734 33.333 0.00 0.00 0.00 2.52
4213 11819 5.356470 CCAGATTCTAAAGAAAGAGCCAAGG 59.644 44.000 0.00 0.00 37.61 3.61
4284 11891 2.187946 CGACAGATGGGAGGCACC 59.812 66.667 0.00 0.00 38.08 5.01
4306 11918 3.181461 CCCTAGGCCTGAGTGACAATAAG 60.181 52.174 17.99 0.00 0.00 1.73
4334 11946 4.634443 GTGGCCGAAAATACAGAGTAATGT 59.366 41.667 0.00 0.00 37.19 2.71
4338 11950 5.051641 GCCGAAAATACAGAGTAATGTCGAG 60.052 44.000 6.42 0.00 34.56 4.04
4347 11959 6.341316 ACAGAGTAATGTCGAGCATACAAAT 58.659 36.000 0.00 0.00 36.67 2.32
4355 11978 3.848019 GTCGAGCATACAAATTTGTGCAG 59.152 43.478 29.72 21.75 42.31 4.41
4394 12017 6.370442 TCTGCAACACAACCATGTATAACTAC 59.630 38.462 0.00 0.00 37.82 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.938838 TCCAAAATTGAACACCTCGGT 58.061 42.857 0.00 0.00 0.00 4.69
43 2149 5.071519 ACCACAATCAAAATCATTGACCCAA 59.928 36.000 0.00 0.00 35.54 4.12
58 2164 7.871973 CAGATCCAAAATTAAACACCACAATCA 59.128 33.333 0.00 0.00 0.00 2.57
64 2170 6.041409 TGAAGCAGATCCAAAATTAAACACCA 59.959 34.615 0.00 0.00 0.00 4.17
65 2171 6.454795 TGAAGCAGATCCAAAATTAAACACC 58.545 36.000 0.00 0.00 0.00 4.16
82 2188 4.491676 CCTTGGTCAAAATCATGAAGCAG 58.508 43.478 0.00 0.00 0.00 4.24
117 2223 5.744666 GGCTAGTTGTTGCCGATTAATTA 57.255 39.130 0.00 0.00 39.71 1.40
173 2280 1.962807 TGACTCATTTTTGCCAGGTGG 59.037 47.619 0.00 0.00 38.53 4.61
277 2384 4.978099 TGATGGGCTCTTCTTGAATATCC 58.022 43.478 0.66 0.00 0.00 2.59
297 2419 7.628769 TGGTGTATATAACGTAGTGTTCTGA 57.371 36.000 0.00 0.00 45.00 3.27
376 2530 2.658268 GCTTTGCTGCGCCGTTTT 60.658 55.556 4.18 0.00 0.00 2.43
467 2621 4.647611 TGGATGTAAAAAGTCGGTGTCAT 58.352 39.130 0.00 0.00 0.00 3.06
531 2685 7.201758 GCTTATCATGACTTCAATGGACATCAA 60.202 37.037 0.00 0.00 0.00 2.57
563 2717 2.238646 TGTCATTTTCAGCGGGTCCTAT 59.761 45.455 0.00 0.00 0.00 2.57
569 2723 3.244976 GTGAAATGTCATTTTCAGCGGG 58.755 45.455 12.04 0.00 44.06 6.13
571 2725 4.289342 TGTGTGAAATGTCATTTTCAGCG 58.711 39.130 12.04 0.00 44.06 5.18
649 2944 3.883489 GTCCCTAAATGTTCCACCTATGC 59.117 47.826 0.00 0.00 0.00 3.14
655 2950 3.434940 AGGTGTCCCTAAATGTTCCAC 57.565 47.619 0.00 0.00 40.19 4.02
673 2968 7.389884 CCTTATCATGACTTCAATGGACATAGG 59.610 40.741 0.00 0.00 0.00 2.57
674 2969 7.389884 CCCTTATCATGACTTCAATGGACATAG 59.610 40.741 0.00 0.00 0.00 2.23
675 2970 7.147320 ACCCTTATCATGACTTCAATGGACATA 60.147 37.037 0.00 0.00 0.00 2.29
677 2972 5.044919 ACCCTTATCATGACTTCAATGGACA 60.045 40.000 0.00 0.00 0.00 4.02
700 2995 0.539986 TTCAGCGGGTCCTATCCAAC 59.460 55.000 0.00 0.00 0.00 3.77
703 2998 2.158813 TCATTTTCAGCGGGTCCTATCC 60.159 50.000 0.00 0.00 0.00 2.59
747 3042 0.597118 TGCTTTTGATGCGGTGCAAC 60.597 50.000 0.00 0.00 43.62 4.17
751 3046 2.068837 ATGTTGCTTTTGATGCGGTG 57.931 45.000 0.00 0.00 0.00 4.94
755 3050 4.152223 GGGTGTAAATGTTGCTTTTGATGC 59.848 41.667 0.00 0.00 0.00 3.91
759 3055 8.994429 TTATATGGGTGTAAATGTTGCTTTTG 57.006 30.769 0.00 0.00 0.00 2.44
765 3061 9.598517 AATGCTTTTATATGGGTGTAAATGTTG 57.401 29.630 0.00 0.00 0.00 3.33
772 3068 5.830991 GGTCCAATGCTTTTATATGGGTGTA 59.169 40.000 0.00 0.00 0.00 2.90
903 3303 5.407691 GGACTGTTCCTACCGACTTAAAAAG 59.592 44.000 0.00 0.00 39.13 2.27
1007 4841 1.573932 CTGCCGATTTGTGTTGCGA 59.426 52.632 0.00 0.00 0.00 5.10
1009 4843 1.734117 GGCTGCCGATTTGTGTTGC 60.734 57.895 1.35 0.00 0.00 4.17
1302 5171 4.544689 CGCTGTCTCCTCGCTCGG 62.545 72.222 0.00 0.00 0.00 4.63
1482 5957 2.047179 GTCCACCTTCCCGCACTC 60.047 66.667 0.00 0.00 0.00 3.51
1564 6046 3.156753 GCGTCGCTTTTCTCTGAAATTC 58.843 45.455 10.68 0.00 0.00 2.17
1567 6049 0.506932 CGCGTCGCTTTTCTCTGAAA 59.493 50.000 16.36 0.00 0.00 2.69
1634 6131 0.317436 GCACTCTCGACGCTATGGAG 60.317 60.000 0.00 0.00 34.56 3.86
1701 6198 3.046390 GCGTCGAGGTTATCTCAGAATG 58.954 50.000 7.01 0.00 42.55 2.67
1760 6305 4.003788 CTTCCGTGGACCAGCCGT 62.004 66.667 0.00 0.00 40.66 5.68
1761 6306 4.760047 CCTTCCGTGGACCAGCCG 62.760 72.222 0.00 0.00 40.66 5.52
1762 6307 3.637273 ACCTTCCGTGGACCAGCC 61.637 66.667 0.00 0.00 37.10 4.85
1764 6309 0.320771 CTTCACCTTCCGTGGACCAG 60.321 60.000 0.00 0.00 43.23 4.00
1766 6311 1.003718 CCTTCACCTTCCGTGGACC 60.004 63.158 0.00 0.00 43.23 4.46
1767 6312 0.037232 CTCCTTCACCTTCCGTGGAC 60.037 60.000 0.00 0.00 43.23 4.02
1768 6313 0.471211 ACTCCTTCACCTTCCGTGGA 60.471 55.000 0.00 0.00 43.23 4.02
1769 6314 1.204941 CTACTCCTTCACCTTCCGTGG 59.795 57.143 0.00 0.00 43.23 4.94
1770 6315 1.204941 CCTACTCCTTCACCTTCCGTG 59.795 57.143 0.00 0.00 44.50 4.94
1771 6316 1.558233 CCTACTCCTTCACCTTCCGT 58.442 55.000 0.00 0.00 0.00 4.69
1772 6317 0.175989 GCCTACTCCTTCACCTTCCG 59.824 60.000 0.00 0.00 0.00 4.30
1773 6318 1.574263 AGCCTACTCCTTCACCTTCC 58.426 55.000 0.00 0.00 0.00 3.46
1774 6319 3.601435 GAAAGCCTACTCCTTCACCTTC 58.399 50.000 0.00 0.00 0.00 3.46
1775 6320 2.028020 CGAAAGCCTACTCCTTCACCTT 60.028 50.000 0.00 0.00 0.00 3.50
1776 6321 1.550976 CGAAAGCCTACTCCTTCACCT 59.449 52.381 0.00 0.00 0.00 4.00
1777 6322 1.549170 TCGAAAGCCTACTCCTTCACC 59.451 52.381 0.00 0.00 0.00 4.02
1778 6323 2.882324 CTCGAAAGCCTACTCCTTCAC 58.118 52.381 0.00 0.00 0.00 3.18
1779 6324 1.204941 GCTCGAAAGCCTACTCCTTCA 59.795 52.381 0.00 0.00 43.10 3.02
1780 6325 1.929230 GCTCGAAAGCCTACTCCTTC 58.071 55.000 0.00 0.00 43.10 3.46
1795 6340 1.572085 CTGGCCTGTGTTTCTGCTCG 61.572 60.000 3.32 0.00 0.00 5.03
1883 6442 2.280797 GCACGGTGAACTGAGCCA 60.281 61.111 13.29 0.00 33.56 4.75
1884 6443 2.029844 GAGCACGGTGAACTGAGCC 61.030 63.158 13.29 0.00 39.23 4.70
1914 6495 4.093408 CCGTATTGTGTCCAGATTGTCTTG 59.907 45.833 0.00 0.00 0.00 3.02
1915 6496 4.253685 CCGTATTGTGTCCAGATTGTCTT 58.746 43.478 0.00 0.00 0.00 3.01
1935 6516 0.452987 CACATTTGCTCATGGACCCG 59.547 55.000 0.00 0.00 0.00 5.28
1952 6533 4.752101 AGAACTATGATCGCATTAAGCCAC 59.248 41.667 0.00 0.00 41.38 5.01
2001 6582 1.812571 AGCAATGAAACTGCCTAACCG 59.187 47.619 0.00 0.00 0.00 4.44
2014 6595 7.432059 TGTGTTGATTTCATTAACAGCAATGA 58.568 30.769 0.00 0.00 41.90 2.57
2019 6600 6.642131 ACACATGTGTTGATTTCATTAACAGC 59.358 34.615 25.76 0.00 41.83 4.40
2057 6644 4.380531 TGAATAGAATTCCATCTGCCGTC 58.619 43.478 0.65 0.00 0.00 4.79
2130 6729 1.134818 TCCCAACATTCGTGGAGATCG 60.135 52.381 0.00 0.00 0.00 3.69
2133 6732 1.003118 CCTTCCCAACATTCGTGGAGA 59.997 52.381 0.00 0.00 0.00 3.71
2184 6915 8.606602 CATCGATACATTTGATCTCTTTTGTGA 58.393 33.333 0.00 0.00 0.00 3.58
2185 6916 7.375280 GCATCGATACATTTGATCTCTTTTGTG 59.625 37.037 0.00 0.00 0.00 3.33
2232 7154 5.404946 CAAAACCTGAAACCATAGATGCAG 58.595 41.667 0.00 0.00 0.00 4.41
2257 7187 0.890683 CAAGTTGGCCTCCATTGGAC 59.109 55.000 3.32 0.00 31.53 4.02
2277 7207 4.900054 GGGTAGAAAGACAATAGGGAGCTA 59.100 45.833 0.00 0.00 0.00 3.32
2285 7221 3.758023 TCGTCGTGGGTAGAAAGACAATA 59.242 43.478 0.00 0.00 32.57 1.90
2287 7223 1.955778 TCGTCGTGGGTAGAAAGACAA 59.044 47.619 0.00 0.00 32.57 3.18
2292 7228 0.518636 CGTCTCGTCGTGGGTAGAAA 59.481 55.000 0.00 0.00 0.00 2.52
2458 7563 1.067821 CCGAGAATAGACACAGGCCTC 59.932 57.143 0.00 0.00 0.00 4.70
2465 7570 3.604875 TTTCCACCCGAGAATAGACAC 57.395 47.619 0.00 0.00 0.00 3.67
2495 7600 8.511604 AAAACTAGCTACATGTGCAAGATAAT 57.488 30.769 9.11 0.00 0.00 1.28
2512 7621 7.342942 GGCGTACAATATACAGAAAAACTAGC 58.657 38.462 0.00 0.00 0.00 3.42
2517 7628 7.690952 AAAGGGCGTACAATATACAGAAAAA 57.309 32.000 0.00 0.00 0.00 1.94
2564 7675 7.980662 TGGCTGTTTTCCATTGATGTATTAATG 59.019 33.333 0.00 3.20 34.61 1.90
2674 7786 4.758251 CGACGCCATCCACCAGCA 62.758 66.667 0.00 0.00 0.00 4.41
2705 7817 2.034879 CATCACAGACCACCGTGCC 61.035 63.158 0.00 0.00 33.03 5.01
2719 7831 6.514870 CGTTGGAAACCATTTCTTCTTCATCA 60.515 38.462 1.62 0.00 46.28 3.07
2756 7868 2.107950 TTACCTTGAGATTGCCCACG 57.892 50.000 0.00 0.00 0.00 4.94
2758 7870 3.686016 GACTTTACCTTGAGATTGCCCA 58.314 45.455 0.00 0.00 0.00 5.36
2779 7891 3.669122 CGAGAGAAGGTAAGAACAACACG 59.331 47.826 0.00 0.00 0.00 4.49
2804 8012 6.224584 GGACGAGAGAAAATAATTAGAGGGG 58.775 44.000 0.00 0.00 0.00 4.79
2805 8013 6.224584 GGGACGAGAGAAAATAATTAGAGGG 58.775 44.000 0.00 0.00 0.00 4.30
2807 8015 6.042208 AGGGGGACGAGAGAAAATAATTAGAG 59.958 42.308 0.00 0.00 0.00 2.43
2809 8017 6.042208 AGAGGGGGACGAGAGAAAATAATTAG 59.958 42.308 0.00 0.00 0.00 1.73
2811 8019 4.722279 AGAGGGGGACGAGAGAAAATAATT 59.278 41.667 0.00 0.00 0.00 1.40
2813 8021 3.721021 AGAGGGGGACGAGAGAAAATAA 58.279 45.455 0.00 0.00 0.00 1.40
2815 8023 2.255770 AGAGGGGGACGAGAGAAAAT 57.744 50.000 0.00 0.00 0.00 1.82
2816 8024 2.913603 TAGAGGGGGACGAGAGAAAA 57.086 50.000 0.00 0.00 0.00 2.29
2817 8025 2.913603 TTAGAGGGGGACGAGAGAAA 57.086 50.000 0.00 0.00 0.00 2.52
2819 8027 4.743705 ATAATTAGAGGGGGACGAGAGA 57.256 45.455 0.00 0.00 0.00 3.10
2820 8028 5.070580 ACAAATAATTAGAGGGGGACGAGAG 59.929 44.000 0.00 0.00 0.00 3.20
2821 8029 4.966805 ACAAATAATTAGAGGGGGACGAGA 59.033 41.667 0.00 0.00 0.00 4.04
2822 8030 5.291905 ACAAATAATTAGAGGGGGACGAG 57.708 43.478 0.00 0.00 0.00 4.18
2823 8031 4.102054 GGACAAATAATTAGAGGGGGACGA 59.898 45.833 0.00 0.00 0.00 4.20
2824 8032 4.102681 AGGACAAATAATTAGAGGGGGACG 59.897 45.833 0.00 0.00 0.00 4.79
2825 8033 5.648330 AGGACAAATAATTAGAGGGGGAC 57.352 43.478 0.00 0.00 0.00 4.46
2875 8083 9.463443 CCACTTATCCTGAAAAGTTAAACAAAG 57.537 33.333 0.00 0.00 33.72 2.77
2885 8093 8.207521 GAGATTTCTCCACTTATCCTGAAAAG 57.792 38.462 0.00 0.00 37.02 2.27
2992 8220 2.419021 CGGCATTTCCCTGCAATTTGAT 60.419 45.455 0.00 0.00 44.12 2.57
3057 8285 3.256558 GTTGAATGCTGCCTTTTGGATC 58.743 45.455 0.00 0.00 44.07 3.36
3061 8289 2.545106 GGTTGTTGAATGCTGCCTTTTG 59.455 45.455 0.00 0.00 0.00 2.44
3073 8301 3.318557 GGTTTTGGATACGGGTTGTTGAA 59.681 43.478 0.00 0.00 42.51 2.69
3090 8318 1.720694 CGTCGGTGCACCTTGGTTTT 61.721 55.000 32.28 0.00 0.00 2.43
3105 8333 1.519455 GGCTCCTCACCATTCGTCG 60.519 63.158 0.00 0.00 0.00 5.12
3114 8342 3.010420 GTCCTAAACAATGGCTCCTCAC 58.990 50.000 0.00 0.00 0.00 3.51
3118 8346 5.468540 AAAAAGTCCTAAACAATGGCTCC 57.531 39.130 0.00 0.00 0.00 4.70
3120 8348 6.969993 TGTAAAAAGTCCTAAACAATGGCT 57.030 33.333 0.00 0.00 0.00 4.75
3183 8412 3.057033 CAGCTGCTAAAACATCTTGCCTT 60.057 43.478 0.00 0.00 0.00 4.35
3221 8460 6.267014 AGCTTAACACTGGAGTACTAAACTGA 59.733 38.462 0.00 0.00 39.07 3.41
3258 8497 5.183228 GGCACTACTAAAACATCTTGCCTA 58.817 41.667 2.00 0.00 44.07 3.93
3263 8502 9.953565 TGTATTTAGGCACTACTAAAACATCTT 57.046 29.630 2.93 0.00 42.67 2.40
3275 8514 7.655521 ACATAGAGTGTGTATTTAGGCACTA 57.344 36.000 0.00 0.00 41.59 2.74
3303 8543 3.981071 TCACACAATCAGGAAGGTAGG 57.019 47.619 0.00 0.00 0.00 3.18
3314 8554 6.675486 GCATAGTACCACACAATCACACAATC 60.675 42.308 0.00 0.00 0.00 2.67
3315 8555 5.123820 GCATAGTACCACACAATCACACAAT 59.876 40.000 0.00 0.00 0.00 2.71
3317 8557 4.000325 GCATAGTACCACACAATCACACA 59.000 43.478 0.00 0.00 0.00 3.72
3318 8558 4.253685 AGCATAGTACCACACAATCACAC 58.746 43.478 0.00 0.00 0.00 3.82
3320 8560 4.759782 AGAGCATAGTACCACACAATCAC 58.240 43.478 0.00 0.00 0.00 3.06
3323 8563 4.711846 TCAGAGAGCATAGTACCACACAAT 59.288 41.667 0.00 0.00 0.00 2.71
3326 8566 4.927978 ATCAGAGAGCATAGTACCACAC 57.072 45.455 0.00 0.00 0.00 3.82
3331 8576 5.895928 TCACACAATCAGAGAGCATAGTAC 58.104 41.667 0.00 0.00 0.00 2.73
3343 8588 8.393366 CCATCTGTAAAGTTATCACACAATCAG 58.607 37.037 0.00 0.00 0.00 2.90
3355 8600 6.530120 TCTTGCTGAACCATCTGTAAAGTTA 58.470 36.000 0.00 0.00 30.96 2.24
3360 8605 4.623932 ACTCTTGCTGAACCATCTGTAA 57.376 40.909 0.00 0.00 0.00 2.41
3368 8613 2.409948 AGCCATACTCTTGCTGAACC 57.590 50.000 0.00 0.00 33.23 3.62
3410 8656 8.629158 TGTAGAAACATTTCTTGTGCAATAACT 58.371 29.630 11.93 0.00 44.70 2.24
3456 8793 3.073650 GGTTCTGGAGATGGGCAGAATAT 59.926 47.826 0.00 0.00 36.29 1.28
3472 8816 3.119531 TGTTTTCTTGTGCACTGGTTCTG 60.120 43.478 19.41 0.63 0.00 3.02
3608 8956 4.962151 GTGTCGTTGTTTAGTCAAAAGCTC 59.038 41.667 0.00 0.00 0.00 4.09
3795 9174 1.000385 CGATGCTTGCTTTGGTGGAAA 60.000 47.619 0.00 0.00 0.00 3.13
3825 9205 6.842780 CACGTATTTCGATGAGATGTTGATTG 59.157 38.462 0.00 0.00 42.86 2.67
3846 9235 0.038455 AGTACAGAGGGAGAGCACGT 59.962 55.000 0.00 0.00 0.00 4.49
3847 9236 1.133407 GAAGTACAGAGGGAGAGCACG 59.867 57.143 0.00 0.00 0.00 5.34
3848 9237 1.478916 GGAAGTACAGAGGGAGAGCAC 59.521 57.143 0.00 0.00 0.00 4.40
3849 9238 1.619977 GGGAAGTACAGAGGGAGAGCA 60.620 57.143 0.00 0.00 0.00 4.26
3850 9239 1.116308 GGGAAGTACAGAGGGAGAGC 58.884 60.000 0.00 0.00 0.00 4.09
3851 9240 1.007238 TGGGGAAGTACAGAGGGAGAG 59.993 57.143 0.00 0.00 0.00 3.20
3852 9241 1.007238 CTGGGGAAGTACAGAGGGAGA 59.993 57.143 0.00 0.00 36.86 3.71
3853 9242 1.490574 CTGGGGAAGTACAGAGGGAG 58.509 60.000 0.00 0.00 36.86 4.30
3854 9243 0.042731 CCTGGGGAAGTACAGAGGGA 59.957 60.000 0.00 0.00 36.86 4.20
3884 9273 1.323534 GTTGTATGATGGTCGCGACAC 59.676 52.381 37.26 25.97 0.00 3.67
3993 9391 1.603739 GTTCTCCTGTTGGGTGGGC 60.604 63.158 0.00 0.00 36.25 5.36
4017 9415 1.306970 CTAGGGTCTGGGTCGGTCT 59.693 63.158 0.00 0.00 0.00 3.85
4027 9425 6.042208 GTGGATAATAAACAGAGCTAGGGTCT 59.958 42.308 0.00 0.00 41.33 3.85
4049 9447 1.884235 AGAAAACTGAAGGAGCGTGG 58.116 50.000 0.00 0.00 0.00 4.94
4084 9482 4.352595 TCCAGATGGGGTAGAAAAGAAACA 59.647 41.667 0.00 0.00 37.22 2.83
4092 9543 5.729229 TGTATTTTCTCCAGATGGGGTAGAA 59.271 40.000 0.00 0.00 36.89 2.10
4213 11819 1.995376 TTGCCCCCTTTTCTCTGTTC 58.005 50.000 0.00 0.00 0.00 3.18
4284 11891 1.207791 ATTGTCACTCAGGCCTAGGG 58.792 55.000 3.98 4.91 0.00 3.53
4306 11918 1.743394 CTGTATTTTCGGCCACCTTCC 59.257 52.381 2.24 0.00 0.00 3.46
4334 11946 3.750652 TCTGCACAAATTTGTATGCTCGA 59.249 39.130 25.34 20.09 39.91 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.