AutoCloner

Multiple sequence alignment - TraesCS2D01G060200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G060200	chr2D	100.000	2969	0	0	1	2969	25023746	25026714	0.000000e+00	5483.0
1	TraesCS2D01G060200	chr2D	81.584	543	92	7	2429	2967	18749334	18748796	2.720000e-120	442.0
2	TraesCS2D01G060200	chr2A	94.274	1467	27	6	745	2204	27499624	27501040	0.000000e+00	2191.0
3	TraesCS2D01G060200	chr2A	98.727	550	7	0	2420	2969	27502209	27502758	0.000000e+00	977.0
4	TraesCS2D01G060200	chr2A	94.248	452	22	2	298	749	27496421	27496868	0.000000e+00	688.0
5	TraesCS2D01G060200	chr2A	94.982	279	11	3	19	295	27495903	27496180	4.540000e-118	435.0
6	TraesCS2D01G060200	chr2A	80.961	541	99	4	2429	2967	20165936	20165398	2.740000e-115	425.0
7	TraesCS2D01G060200	chr2A	96.133	181	3	1	2227	2407	27501839	27502015	2.890000e-75	292.0
8	TraesCS2D01G060200	chr1A	86.667	945	111	12	1039	1977	564396820	564395885	0.000000e+00	1033.0
9	TraesCS2D01G060200	chr1B	86.200	942	125	3	1048	1988	654031232	654030295	0.000000e+00	1014.0
10	TraesCS2D01G060200	chr2B	96.909	550	17	0	2420	2969	40490596	40491145	0.000000e+00	922.0
11	TraesCS2D01G060200	chr2B	77.532	543	93	16	2429	2967	30562850	30562333	1.730000e-77	300.0
12	TraesCS2D01G060200	chr2B	98.137	161	3	0	2420	2580	40488460	40488620	6.270000e-72	281.0
13	TraesCS2D01G060200	chr2B	97.516	161	4	0	2420	2580	40484191	40484351	2.920000e-70	276.0
14	TraesCS2D01G060200	chr2B	97.516	161	4	0	2420	2580	40489528	40489688	2.920000e-70	276.0
15	TraesCS2D01G060200	chr2B	96.273	161	6	0	2420	2580	40482056	40482216	6.310000e-67	265.0
16	TraesCS2D01G060200	chr2B	96.273	161	6	0	2420	2580	40486325	40486485	6.310000e-67	265.0
17	TraesCS2D01G060200	chr2B	95.652	161	7	0	2420	2580	40480988	40481148	2.940000e-65	259.0
18	TraesCS2D01G060200	chr2B	95.652	161	7	0	2420	2580	40483123	40483283	2.940000e-65	259.0
19	TraesCS2D01G060200	chr2B	87.302	126	12	1	2286	2411	40479575	40479696	1.110000e-29	141.0
20	TraesCS2D01G060200	chr5B	77.465	284	50	9	2615	2897	470200291	470200561	1.100000e-34	158.0
21	TraesCS2D01G060200	chr5D	79.141	163	19	3	396	543	5662087	5661925	6.770000e-17	99.0
22	TraesCS2D01G060200	chr5D	88.571	70	8	0	218	287	5662185	5662116	5.270000e-13	86.1
23	TraesCS2D01G060200	chr1D	93.023	43	3	0	346	388	418648261	418648303	2.470000e-06	63.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G060200	chr2D	25023746	25026714	2968	False	5483.000000	5483	100.000000	1	2969	1	chr2D.!!$F1	2968
1	TraesCS2D01G060200	chr2D	18748796	18749334	538	True	442.000000	442	81.584000	2429	2967	1	chr2D.!!$R1	538
2	TraesCS2D01G060200	chr2A	27495903	27502758	6855	False	916.600000	2191	95.672800	19	2969	5	chr2A.!!$F1	2950
3	TraesCS2D01G060200	chr2A	20165398	20165936	538	True	425.000000	425	80.961000	2429	2967	1	chr2A.!!$R1	538
4	TraesCS2D01G060200	chr1A	564395885	564396820	935	True	1033.000000	1033	86.667000	1039	1977	1	chr1A.!!$R1	938
5	TraesCS2D01G060200	chr1B	654030295	654031232	937	True	1014.000000	1014	86.200000	1048	1988	1	chr1B.!!$R1	940
6	TraesCS2D01G060200	chr2B	40479575	40491145	11570	False	327.111111	922	95.692222	2286	2969	9	chr2B.!!$F1	683
7	TraesCS2D01G060200	chr2B	30562333	30562850	517	True	300.000000	300	77.532000	2429	2967	1	chr2B.!!$R1	538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
688	929	0.319555	CTTTTCTCCGGCGACAGACA	60.32	55.0	9.3	0.0	0.0	3.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2322	6162	0.321671	CCCTTCGAAGAGCTTCCACA	59.678	55.0	26.61	0.0	38.43	4.17	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
107	109	3.928992	AGAACAATGCTATGTGACGAGTG	59.071	43.478	0.00	0.00	32.81	3.51
139	142	3.869473	TTAGGGACCACACGCGCAC	62.869	63.158	5.73	0.00	0.00	5.34
172	175	2.485426	CTCACATGTGCATTTTCGGACT	59.515	45.455	21.38	0.00	0.00	3.85
179	182	1.531739	GCATTTTCGGACTGGCCCAA	61.532	55.000	0.00	0.00	0.00	4.12
195	198	2.779506	CCCAACTAGCTTTTTCTCGGT	58.220	47.619	0.00	0.00	0.00	4.69
203	206	4.307443	AGCTTTTTCTCGGTTTTGGAAG	57.693	40.909	0.00	0.00	0.00	3.46
231	234	1.153353	TTTTCTCGCCATGTTCCGTC	58.847	50.000	0.00	0.00	0.00	4.79
242	245	2.847959	TGTTCCGTCGCGTATCATAA	57.152	45.000	5.77	0.00	0.00	1.90
296	299	9.620259	AACTGATCCTTCATAATCTAAAAGACC	57.380	33.333	0.00	0.00	0.00	3.85
445	686	1.983972	AAAGTGCTCTCGTCGTCATC	58.016	50.000	0.00	0.00	0.00	2.92
460	701	5.953777	CGTCGTCATCAACACAAATATGAAG	59.046	40.000	0.00	0.00	30.60	3.02
464	705	6.250819	GTCATCAACACAAATATGAAGACGG	58.749	40.000	0.00	0.00	33.75	4.79
548	789	1.064758	GCATGGGATGGTGGAACAGTA	60.065	52.381	0.00	0.00	41.80	2.74
588	829	7.036829	GGTGAGAGAAAGATCTAACCAAGTAC	58.963	42.308	5.52	0.00	46.63	2.73
600	841	1.831736	ACCAAGTACCGATCTCCAAGG	59.168	52.381	0.00	0.00	0.00	3.61
658	899	4.109675	GTGGGGCCTACCGTGCAT	62.110	66.667	9.20	0.00	41.60	3.96
659	900	4.108299	TGGGGCCTACCGTGCATG	62.108	66.667	0.84	0.00	41.60	4.06
672	913	2.684881	CCGTGCATGGAAGAATAGCTTT	59.315	45.455	21.08	0.00	36.83	3.51
686	927	1.374252	GCTTTTCTCCGGCGACAGA	60.374	57.895	9.30	6.43	0.00	3.41
688	929	0.319555	CTTTTCTCCGGCGACAGACA	60.320	55.000	9.30	0.00	0.00	3.41
713	954	3.732212	TCATTCCTCAGTTGCCATATCG	58.268	45.455	0.00	0.00	0.00	2.92
753	3754	6.108687	TGATGATCATACTTCCTGTTGACAC	58.891	40.000	8.54	0.00	0.00	3.67
758	3759	4.455533	TCATACTTCCTGTTGACACATTGC	59.544	41.667	0.00	0.00	30.39	3.56
813	3814	3.420839	AGTCTTGTGCTTTTTGGAACG	57.579	42.857	0.00	0.00	0.00	3.95
895	3897	1.140452	TCTCATGATCTGCCCTTCTGC	59.860	52.381	0.00	0.00	0.00	4.26
915	3917	2.808933	GCAGGTGCAGGTGTAACAACTA	60.809	50.000	0.00	0.00	39.07	2.24
955	3957	0.896226	GGTCGTTGGGAGCTTAGACT	59.104	55.000	0.00	0.00	40.05	3.24
1013	4015	0.995132	ATGGGCATGGTCATGGAGGA	60.995	55.000	12.23	0.00	39.16	3.71
1055	4057	2.670592	GTTTGGTTACCCGGCGCT	60.671	61.111	7.64	0.00	0.00	5.92
1596	4634	0.379669	GCAAGATCGCCAACCAGATG	59.620	55.000	0.00	0.00	0.00	2.90
1629	4667	4.767255	GTGGTGGGCCTCAGCGAG	62.767	72.222	4.53	0.00	46.16	5.03
1631	4669	4.459089	GGTGGGCCTCAGCGAGTC	62.459	72.222	4.53	0.00	41.24	3.36
1632	4670	4.459089	GTGGGCCTCAGCGAGTCC	62.459	72.222	4.53	1.78	41.24	3.85
1635	4673	4.154347	GGCCTCAGCGAGTCCCTG	62.154	72.222	0.00	0.00	41.24	4.45
1636	4674	4.154347	GCCTCAGCGAGTCCCTGG	62.154	72.222	4.98	0.00	0.00	4.45
1637	4675	4.154347	CCTCAGCGAGTCCCTGGC	62.154	72.222	4.98	0.00	35.46	4.85
1638	4676	4.154347	CTCAGCGAGTCCCTGGCC	62.154	72.222	4.98	0.00	35.84	5.36
1639	4677	4.704103	TCAGCGAGTCCCTGGCCT	62.704	66.667	3.32	0.00	35.84	5.19
1640	4678	3.710722	CAGCGAGTCCCTGGCCTT	61.711	66.667	3.32	0.00	35.84	4.35
1641	4679	3.394836	AGCGAGTCCCTGGCCTTC	61.395	66.667	3.32	0.00	35.84	3.46
1642	4680	4.821589	GCGAGTCCCTGGCCTTCG	62.822	72.222	3.32	5.21	0.00	3.79
1643	4681	4.821589	CGAGTCCCTGGCCTTCGC	62.822	72.222	3.32	0.00	0.00	4.70
1644	4682	4.821589	GAGTCCCTGGCCTTCGCG	62.822	72.222	3.32	0.00	35.02	5.87
1836	4898	1.983035	ATGGCCAGGAGGAGGAGGAT	61.983	60.000	13.05	0.00	36.89	3.24
1945	5007	2.223829	GGATTGATCACCGTCATCGAGT	60.224	50.000	0.00	0.00	39.71	4.18
1988	5053	0.858583	TGCAAGACATGTGTTCGTCG	59.141	50.000	1.15	0.00	37.23	5.12
2014	5079	1.404391	ACACACGGACATACGGAGATC	59.596	52.381	0.00	0.00	38.39	2.75
2050	5115	0.950555	GATCTGCCACTGTCGCAACA	60.951	55.000	1.04	0.00	35.40	3.33
2051	5116	0.534877	ATCTGCCACTGTCGCAACAA	60.535	50.000	1.04	0.00	35.40	2.83
2052	5117	0.534877	TCTGCCACTGTCGCAACAAT	60.535	50.000	1.04	0.00	35.40	2.71
2053	5118	0.386352	CTGCCACTGTCGCAACAATG	60.386	55.000	1.04	0.00	35.40	2.82
2125	5190	4.213694	CCTCTTGATGCTTGCTGATGTATC	59.786	45.833	0.00	0.00	0.00	2.24
2130	5195	4.573607	TGATGCTTGCTGATGTATCAACTC	59.426	41.667	0.00	0.00	36.18	3.01
2200	5265	6.954232	AGCATCCAAATCCAAATCATTTTCT	58.046	32.000	0.00	0.00	0.00	2.52
2201	5266	7.046033	AGCATCCAAATCCAAATCATTTTCTC	58.954	34.615	0.00	0.00	0.00	2.87
2202	5267	7.046033	GCATCCAAATCCAAATCATTTTCTCT	58.954	34.615	0.00	0.00	0.00	3.10
2205	5270	6.658816	TCCAAATCCAAATCATTTTCTCTCGA	59.341	34.615	0.00	0.00	0.00	4.04
2207	5272	7.977853	CCAAATCCAAATCATTTTCTCTCGATT	59.022	33.333	0.00	0.00	0.00	3.34
2208	5273	9.362539	CAAATCCAAATCATTTTCTCTCGATTT	57.637	29.630	0.00	0.00	38.32	2.17
2210	5275	7.452880	TCCAAATCATTTTCTCTCGATTTGT	57.547	32.000	17.61	0.00	46.86	2.83
2213	5278	9.282247	CCAAATCATTTTCTCTCGATTTGTAAG	57.718	33.333	17.61	4.43	46.86	2.34
2214	5279	9.831737	CAAATCATTTTCTCTCGATTTGTAAGT	57.168	29.630	13.09	0.00	44.84	2.24
2225	5290	9.760660	CTCTCGATTTGTAAGTAAAATTCTTGG	57.239	33.333	0.00	0.00	0.00	3.61
2244	6084	4.142609	TGGTAGGCTTCATCAATGACTC	57.857	45.455	0.00	0.00	36.36	3.36
2310	6150	3.621794	CTTCTTTGACAAGCACGAAAGG	58.378	45.455	0.00	0.00	0.00	3.11
2319	6159	1.568504	AGCACGAAAGGAGGGATGTA	58.431	50.000	0.00	0.00	0.00	2.29
2320	6160	1.207329	AGCACGAAAGGAGGGATGTAC	59.793	52.381	0.00	0.00	0.00	2.90
2321	6161	1.922570	CACGAAAGGAGGGATGTACG	58.077	55.000	0.00	0.00	0.00	3.67
2322	6162	1.203994	CACGAAAGGAGGGATGTACGT	59.796	52.381	0.00	0.00	0.00	3.57
2375	13690	5.953183	TGAGAACATGAAAATTGAATCGGG	58.047	37.500	0.00	0.00	0.00	5.14
2407	13722	1.613630	AGGTGAGGCCGGAGACAAT	60.614	57.895	5.05	0.00	43.70	2.71
2411	13726	0.614697	TGAGGCCGGAGACAATGAGA	60.615	55.000	5.05	0.00	0.00	3.27
2413	13728	0.904865	AGGCCGGAGACAATGAGACA	60.905	55.000	5.05	0.00	0.00	3.41
2414	13729	0.036388	GGCCGGAGACAATGAGACAA	60.036	55.000	5.05	0.00	0.00	3.18
2415	13730	1.363744	GCCGGAGACAATGAGACAAG	58.636	55.000	5.05	0.00	0.00	3.16
2416	13731	2.009042	GCCGGAGACAATGAGACAAGG	61.009	57.143	5.05	0.00	0.00	3.61
2417	13732	1.406069	CCGGAGACAATGAGACAAGGG	60.406	57.143	0.00	0.00	0.00	3.95
2418	13733	1.406069	CGGAGACAATGAGACAAGGGG	60.406	57.143	0.00	0.00	0.00	4.79
2738	17479	2.997897	AGTCCGCGAAGAAGGCCT	60.998	61.111	8.23	0.00	0.00	5.19

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	3.075005	GACTGCCTACTCGCCCCA	61.075	66.667	0.00	0.00	0.00	4.96
1	2	1.900545	AAAGACTGCCTACTCGCCCC	61.901	60.000	0.00	0.00	0.00	5.80
2	3	0.036294	AAAAGACTGCCTACTCGCCC	60.036	55.000	0.00	0.00	0.00	6.13
3	4	1.809684	AAAAAGACTGCCTACTCGCC	58.190	50.000	0.00	0.00	0.00	5.54
107	109	2.202756	CTAACCAGCGAGCGACCC	60.203	66.667	0.00	0.00	0.00	4.46
172	175	2.514803	GAGAAAAAGCTAGTTGGGCCA	58.485	47.619	0.00	0.00	0.00	5.36
179	182	4.457466	TCCAAAACCGAGAAAAAGCTAGT	58.543	39.130	0.00	0.00	0.00	2.57
229	232	6.785633	CACAATGTAACATTATGATACGCGAC	59.214	38.462	15.93	4.24	29.47	5.19
231	234	6.569693	CACACAATGTAACATTATGATACGCG	59.430	38.462	3.53	3.53	29.47	6.01
365	606	8.597662	TGGAACACTATAGAAGTACACAAAAC	57.402	34.615	6.78	0.00	35.76	2.43
432	673	2.331809	TGTGTTGATGACGACGAGAG	57.668	50.000	0.00	0.00	33.40	3.20
445	686	6.421377	TGATCCGTCTTCATATTTGTGTTG	57.579	37.500	0.00	0.00	0.00	3.33
460	701	8.530269	ACCGAAAGTATAATTTATGATCCGTC	57.470	34.615	0.00	0.00	0.00	4.79
527	768	1.000233	TGTTCCACCATCCCATGCC	60.000	57.895	0.00	0.00	0.00	4.40
548	789	0.540133	TCACCACCACATGCAAGCAT	60.540	50.000	0.86	0.86	37.08	3.79
588	829	3.007635	GTTGGTTTACCTTGGAGATCGG	58.992	50.000	0.00	0.00	36.82	4.18
600	841	1.799916	GCATGCGCCGTTGGTTTAC	60.800	57.895	4.18	0.00	0.00	2.01
658	899	3.873910	CCGGAGAAAAGCTATTCTTCCA	58.126	45.455	0.00	0.00	39.70	3.53
659	900	2.614520	GCCGGAGAAAAGCTATTCTTCC	59.385	50.000	5.05	0.00	39.70	3.46
672	913	1.179152	TATTGTCTGTCGCCGGAGAA	58.821	50.000	10.32	0.00	34.12	2.87
686	927	4.858850	TGGCAACTGAGGAATGATATTGT	58.141	39.130	0.00	0.00	37.61	2.71
688	929	6.596888	CGATATGGCAACTGAGGAATGATATT	59.403	38.462	0.00	0.00	37.61	1.28
739	980	1.603802	CGCAATGTGTCAACAGGAAGT	59.396	47.619	0.00	0.00	40.39	3.01
753	3754	1.007011	GTCGATCGTCAACTCGCAATG	60.007	52.381	15.94	0.00	34.94	2.82
778	3779	6.924060	AGCACAAGACTAACTTACACTAACTG	59.076	38.462	0.00	0.00	37.03	3.16
813	3814	6.127897	CCAAATCTGGGATAAACAACTCACTC	60.128	42.308	0.00	0.00	39.30	3.51
895	3897	1.967319	AGTTGTTACACCTGCACCTG	58.033	50.000	0.00	0.00	0.00	4.00
915	3917	4.068599	CCCAAAGTTGTGGTTTGTTTGTT	58.931	39.130	0.00	0.00	36.90	2.83
955	3957	1.215014	CGACACGCTCAAGCTCAACA	61.215	55.000	0.00	0.00	39.32	3.33
1013	4015	1.203275	ACGGTTCTACCTTCTTCCCCT	60.203	52.381	0.00	0.00	35.66	4.79
1405	4443	4.664677	GACAGCGTGACAGCCGGT	62.665	66.667	1.90	0.00	38.01	5.28
1627	4665	4.821589	CGCGAAGGCCAGGGACTC	62.822	72.222	5.01	0.00	34.60	3.36
1988	5053	0.437295	GTATGTCCGTGTGTCGTTGC	59.563	55.000	0.00	0.00	37.94	4.17
2014	5079	3.806521	CAGATCGAATACAGCCCAGAAAG	59.193	47.826	0.00	0.00	0.00	2.62
2050	5115	2.912771	CATGCATGGATTGTTGGCATT	58.087	42.857	19.40	0.00	42.81	3.56
2051	5116	2.613026	CATGCATGGATTGTTGGCAT	57.387	45.000	19.40	0.00	45.33	4.40
2074	5139	5.220586	GCGAAAATGACATAAATCGGAGTGA	60.221	40.000	15.10	0.00	0.00	3.41
2125	5190	4.689812	CCACAGAGAACTGAATCAGAGTTG	59.310	45.833	18.20	9.71	46.03	3.16
2130	5195	3.244353	ACCACCACAGAGAACTGAATCAG	60.244	47.826	8.98	8.98	46.03	2.90
2200	5265	9.280174	ACCAAGAATTTTACTTACAAATCGAGA	57.720	29.630	0.00	0.00	0.00	4.04
2205	5270	9.309224	AGCCTACCAAGAATTTTACTTACAAAT	57.691	29.630	0.00	0.00	0.00	2.32
2207	5272	8.700439	AAGCCTACCAAGAATTTTACTTACAA	57.300	30.769	0.00	0.00	0.00	2.41
2208	5273	7.940137	TGAAGCCTACCAAGAATTTTACTTACA	59.060	33.333	0.00	0.00	0.00	2.41
2209	5274	8.331730	TGAAGCCTACCAAGAATTTTACTTAC	57.668	34.615	0.00	0.00	0.00	2.34
2210	5275	9.174166	GATGAAGCCTACCAAGAATTTTACTTA	57.826	33.333	0.00	0.00	0.00	2.24
2213	5278	7.391148	TGATGAAGCCTACCAAGAATTTTAC	57.609	36.000	0.00	0.00	0.00	2.01
2214	5279	8.469200	CATTGATGAAGCCTACCAAGAATTTTA	58.531	33.333	0.00	0.00	0.00	1.52
2215	5280	6.916360	TTGATGAAGCCTACCAAGAATTTT	57.084	33.333	0.00	0.00	0.00	1.82
2216	5281	6.664816	TCATTGATGAAGCCTACCAAGAATTT	59.335	34.615	0.00	0.00	33.08	1.82
2217	5282	6.096001	GTCATTGATGAAGCCTACCAAGAATT	59.904	38.462	0.00	0.00	38.75	2.17
2221	5286	4.521146	AGTCATTGATGAAGCCTACCAAG	58.479	43.478	0.00	0.00	38.75	3.61
2224	5289	3.118261	TGGAGTCATTGATGAAGCCTACC	60.118	47.826	12.02	0.00	38.75	3.18
2225	5290	4.142609	TGGAGTCATTGATGAAGCCTAC	57.857	45.455	12.02	1.86	38.75	3.18
2244	6084	4.298332	AGCATTTAACGCTTCAACTTTGG	58.702	39.130	0.00	0.00	35.82	3.28
2310	6150	1.739371	GCTTCCACACGTACATCCCTC	60.739	57.143	0.00	0.00	0.00	4.30
2319	6159	0.387929	TTCGAAGAGCTTCCACACGT	59.612	50.000	0.00	0.00	38.43	4.49
2320	6160	1.063806	CTTCGAAGAGCTTCCACACG	58.936	55.000	20.74	0.00	38.43	4.49
2321	6161	1.433534	CCTTCGAAGAGCTTCCACAC	58.566	55.000	26.61	0.00	38.43	3.82
2322	6162	0.321671	CCCTTCGAAGAGCTTCCACA	59.678	55.000	26.61	0.00	38.43	4.17
2375	13690	2.158943	CCTCACCTCCCTTTTATCGTCC	60.159	54.545	0.00	0.00	0.00	4.79
2407	13722	2.191400	CATTCTCTCCCCCTTGTCTCA	58.809	52.381	0.00	0.00	0.00	3.27
2411	13726	1.912043	CTGACATTCTCTCCCCCTTGT	59.088	52.381	0.00	0.00	0.00	3.16
2413	13728	2.350863	ACTGACATTCTCTCCCCCTT	57.649	50.000	0.00	0.00	0.00	3.95
2414	13729	3.246167	ACTTACTGACATTCTCTCCCCCT	60.246	47.826	0.00	0.00	0.00	4.79
2415	13730	3.108376	ACTTACTGACATTCTCTCCCCC	58.892	50.000	0.00	0.00	0.00	5.40
2416	13731	3.769844	TCACTTACTGACATTCTCTCCCC	59.230	47.826	0.00	0.00	0.00	4.81
2417	13732	4.679372	GCTCACTTACTGACATTCTCTCCC	60.679	50.000	0.00	0.00	0.00	4.30
2418	13733	4.429108	GCTCACTTACTGACATTCTCTCC	58.571	47.826	0.00	0.00	0.00	3.71

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.