Multiple sequence alignment - TraesCS2D01G059600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G059600 chr2D 100.000 3137 0 0 1 3137 24877071 24880207 0.000000e+00 5794.0
1 TraesCS2D01G059600 chr2A 97.115 1733 44 5 1406 3134 27125419 27123689 0.000000e+00 2918.0
2 TraesCS2D01G059600 chr2A 92.463 1433 78 9 1 1413 27128074 27126652 0.000000e+00 2021.0
3 TraesCS2D01G059600 chr2A 88.076 1585 126 31 876 2418 27277349 27275786 0.000000e+00 1821.0
4 TraesCS2D01G059600 chr2B 89.675 1230 83 11 943 2141 39978597 39977381 0.000000e+00 1528.0
5 TraesCS2D01G059600 chr1D 91.296 494 36 2 1 488 110922253 110922745 0.000000e+00 667.0
6 TraesCS2D01G059600 chr5D 91.093 494 39 1 1 489 388770105 388769612 0.000000e+00 664.0
7 TraesCS2D01G059600 chr5D 91.039 491 37 2 3 487 230014328 230013839 0.000000e+00 656.0
8 TraesCS2D01G059600 chr1A 90.982 499 36 2 1 493 583247946 583248441 0.000000e+00 664.0
9 TraesCS2D01G059600 chr1A 89.130 46 2 2 2356 2399 12311968 12312012 2.000000e-03 54.7
10 TraesCS2D01G059600 chr3D 90.818 501 37 5 1 494 115643469 115642971 0.000000e+00 662.0
11 TraesCS2D01G059600 chr3B 91.111 495 33 7 1 487 255699892 255700383 0.000000e+00 660.0
12 TraesCS2D01G059600 chr3B 90.891 494 36 4 1 488 458013057 458012567 0.000000e+00 654.0
13 TraesCS2D01G059600 chr3B 97.143 35 1 0 2129 2163 11577731 11577697 3.380000e-05 60.2
14 TraesCS2D01G059600 chr4D 91.189 488 35 4 6 487 324234018 324233533 0.000000e+00 656.0
15 TraesCS2D01G059600 chr4D 90.600 500 37 5 1 494 322076675 322076180 0.000000e+00 654.0
16 TraesCS2D01G059600 chr4D 78.125 384 72 9 981 1361 422548504 422548878 1.880000e-57 233.0
17 TraesCS2D01G059600 chr6A 78.780 377 66 10 989 1361 530252935 530252569 1.120000e-59 241.0
18 TraesCS2D01G059600 chr6A 74.016 254 56 9 1858 2106 530252026 530251778 9.260000e-16 95.3
19 TraesCS2D01G059600 chr6D 78.133 375 72 7 989 1361 385787090 385786724 2.430000e-56 230.0
20 TraesCS2D01G059600 chr6D 90.000 70 7 0 1858 1927 385786183 385786114 1.200000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G059600 chr2D 24877071 24880207 3136 False 5794.0 5794 100.000 1 3137 1 chr2D.!!$F1 3136
1 TraesCS2D01G059600 chr2A 27123689 27128074 4385 True 2469.5 2918 94.789 1 3134 2 chr2A.!!$R2 3133
2 TraesCS2D01G059600 chr2A 27275786 27277349 1563 True 1821.0 1821 88.076 876 2418 1 chr2A.!!$R1 1542
3 TraesCS2D01G059600 chr2B 39977381 39978597 1216 True 1528.0 1528 89.675 943 2141 1 chr2B.!!$R1 1198

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 310 0.028242 CCGAAGATCTCGTCGTGAGG 59.972 60.000 14.12 0.0 46.65 3.86 F
1374 1409 1.080230 CTGGTGAGAGAGCACACGG 60.080 63.158 0.00 0.0 40.52 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1413 1448 0.664761 GTTGGGATCCATGCATGTCG 59.335 55.000 24.58 11.03 31.53 4.35 R
3117 4447 1.218316 GACCTAAGGCCACAGACGG 59.782 63.158 5.01 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 6.468333 TTTAAGTGCATGTATCATGGCAAT 57.532 33.333 10.96 6.58 38.10 3.56
106 107 6.037062 GGCAATTTTAGTTTATGGTTCATGGC 59.963 38.462 0.00 0.00 0.00 4.40
108 109 7.118971 GCAATTTTAGTTTATGGTTCATGGCAA 59.881 33.333 0.00 0.00 0.00 4.52
113 114 5.815581 AGTTTATGGTTCATGGCAAGTCTA 58.184 37.500 0.00 0.00 0.00 2.59
126 127 7.336931 TCATGGCAAGTCTAGTTTCTTAATTCC 59.663 37.037 0.00 0.00 0.00 3.01
214 215 5.156355 CAACTTCAGTGTAAACATCATGGC 58.844 41.667 0.00 0.00 0.00 4.40
234 235 4.220163 TGGCAATTCATGTGCAATAGACAA 59.780 37.500 8.81 0.00 44.07 3.18
237 238 5.865552 GCAATTCATGTGCAATAGACAAGTT 59.134 36.000 2.12 0.00 41.80 2.66
238 239 6.366877 GCAATTCATGTGCAATAGACAAGTTT 59.633 34.615 2.12 0.00 41.80 2.66
240 241 9.409312 CAATTCATGTGCAATAGACAAGTTTAA 57.591 29.630 0.00 0.00 0.00 1.52
241 242 8.970691 ATTCATGTGCAATAGACAAGTTTAAC 57.029 30.769 0.00 0.00 0.00 2.01
242 243 6.908825 TCATGTGCAATAGACAAGTTTAACC 58.091 36.000 0.00 0.00 0.00 2.85
243 244 5.699097 TGTGCAATAGACAAGTTTAACCC 57.301 39.130 0.00 0.00 0.00 4.11
245 246 5.472137 TGTGCAATAGACAAGTTTAACCCTC 59.528 40.000 0.00 0.00 0.00 4.30
304 310 0.028242 CCGAAGATCTCGTCGTGAGG 59.972 60.000 14.12 0.00 46.65 3.86
314 320 3.123804 CTCGTCGTGAGGGATTTAATGG 58.876 50.000 0.00 0.00 41.29 3.16
334 340 4.393834 TGGTGAAAACGGATCTTCAATCA 58.606 39.130 0.00 0.00 33.52 2.57
441 447 4.279169 GGTCTGTATGTTATAGGGCGTGTA 59.721 45.833 0.00 0.00 0.00 2.90
452 458 3.428282 GCGTGTAGGCGGGTTTGG 61.428 66.667 0.00 0.00 0.00 3.28
455 461 1.602605 GTGTAGGCGGGTTTGGCTT 60.603 57.895 0.00 0.00 42.97 4.35
482 488 2.554272 GTGTGGGCGTTAGCGTTG 59.446 61.111 0.00 0.00 46.35 4.10
495 501 4.665897 CGTTAGCGTTGTCCTTCTTTTAGC 60.666 45.833 0.00 0.00 0.00 3.09
507 513 4.863131 CCTTCTTTTAGCGTACGTGATTCT 59.137 41.667 17.90 7.35 0.00 2.40
558 564 4.499183 ACGTGAGATCTGTTTCTTCCATC 58.501 43.478 0.00 0.00 0.00 3.51
575 581 4.686972 TCCATCGAACATGATTCTGAGAC 58.313 43.478 0.00 0.00 0.00 3.36
578 584 4.377839 TCGAACATGATTCTGAGACCTC 57.622 45.455 0.00 0.00 0.00 3.85
613 623 5.972935 TGAGGCACGTGAGATCTTTTTATA 58.027 37.500 22.23 0.00 0.00 0.98
614 624 6.403049 TGAGGCACGTGAGATCTTTTTATAA 58.597 36.000 22.23 0.00 0.00 0.98
637 647 5.583495 ACGATGAGATCTCTTCTTTTACCG 58.417 41.667 27.03 18.62 33.74 4.02
642 652 4.670347 AGATCTCTTCTTTTACCGTACGC 58.330 43.478 10.49 0.00 0.00 4.42
647 657 4.980590 TCTTCTTTTACCGTACGCGATTA 58.019 39.130 15.93 0.00 41.33 1.75
651 661 5.581605 TCTTTTACCGTACGCGATTATTCT 58.418 37.500 15.93 0.00 41.33 2.40
652 662 5.682862 TCTTTTACCGTACGCGATTATTCTC 59.317 40.000 15.93 0.00 41.33 2.87
659 669 5.108480 CCGTACGCGATTATTCTCAGTTTAC 60.108 44.000 15.93 0.00 41.33 2.01
666 676 8.169268 CGCGATTATTCTCAGTTTACTTTTCTT 58.831 33.333 0.00 0.00 0.00 2.52
697 707 8.509690 TGTGATCTTGATTCTGAGATTTGTTTC 58.490 33.333 0.00 0.00 32.96 2.78
728 738 9.692749 TTTATACACGGACATGATATCTCTTTC 57.307 33.333 0.00 0.00 0.00 2.62
789 800 4.744136 TTAGAGACGTGATAGCGTATGG 57.256 45.455 0.00 0.00 45.79 2.74
847 867 6.592607 TCTCCGTCGCAAAATAAGTATCTTTT 59.407 34.615 0.00 0.00 0.00 2.27
848 868 7.760794 TCTCCGTCGCAAAATAAGTATCTTTTA 59.239 33.333 0.00 0.00 0.00 1.52
849 869 7.902032 TCCGTCGCAAAATAAGTATCTTTTAG 58.098 34.615 0.00 0.00 0.00 1.85
850 870 7.546667 TCCGTCGCAAAATAAGTATCTTTTAGT 59.453 33.333 0.00 0.00 0.00 2.24
851 871 8.810427 CCGTCGCAAAATAAGTATCTTTTAGTA 58.190 33.333 0.00 0.00 0.00 1.82
852 872 9.615779 CGTCGCAAAATAAGTATCTTTTAGTAC 57.384 33.333 0.00 0.00 0.00 2.73
853 873 9.615779 GTCGCAAAATAAGTATCTTTTAGTACG 57.384 33.333 0.00 0.00 0.00 3.67
854 874 9.571810 TCGCAAAATAAGTATCTTTTAGTACGA 57.428 29.630 0.00 0.00 0.00 3.43
855 875 9.831054 CGCAAAATAAGTATCTTTTAGTACGAG 57.169 33.333 0.00 0.00 0.00 4.18
895 915 5.696724 ACACTGCTATAAATTGCTACGATCC 59.303 40.000 0.00 0.00 0.00 3.36
915 935 4.211125 TCCAGCAACTCACACCAATTAAA 58.789 39.130 0.00 0.00 0.00 1.52
1086 1106 2.183300 GCAGTGACCGCGTCCATA 59.817 61.111 4.92 0.00 0.00 2.74
1213 1233 4.962836 AGGCCAAGCAGCGCAACT 62.963 61.111 11.47 2.49 0.00 3.16
1372 1407 1.337635 CCTTCTGGTGAGAGAGCACAC 60.338 57.143 0.00 0.00 40.52 3.82
1374 1409 1.080230 CTGGTGAGAGAGCACACGG 60.080 63.158 0.00 0.00 40.52 4.94
1473 2750 1.338890 TGACACGGTTGGGGAGTTCA 61.339 55.000 0.00 0.00 0.00 3.18
1487 2764 3.559171 GGGAGTTCACCAAGAATGCTGTA 60.559 47.826 0.00 0.00 38.76 2.74
1586 2863 0.036577 ACCAGCTCTGCTACAGCTTG 60.037 55.000 2.44 2.61 45.34 4.01
2423 3752 4.680110 CCGATGACGCCAAGTTTATACTAG 59.320 45.833 0.00 0.00 38.29 2.57
2433 3762 6.801862 GCCAAGTTTATACTAGCAGTGTTTTG 59.198 38.462 0.00 0.00 35.14 2.44
2437 3766 8.671384 AGTTTATACTAGCAGTGTTTTGTCAA 57.329 30.769 0.00 0.00 31.21 3.18
2445 3774 3.983344 GCAGTGTTTTGTCAATAGGCTTG 59.017 43.478 0.00 0.00 0.00 4.01
2464 3793 3.055719 CGCAACCACGAGGGCAAT 61.056 61.111 3.29 0.00 42.05 3.56
2512 3841 3.858877 GCAACATGTAGCGGATCTAGAGG 60.859 52.174 0.00 0.00 0.00 3.69
2538 3867 7.094205 GGGAGCCATGGAATAATTTGTACTATG 60.094 40.741 18.40 0.00 0.00 2.23
2679 4008 5.792741 TCAAAGGATAAAATGGCAGGTTTG 58.207 37.500 8.72 2.98 0.00 2.93
2834 4163 8.867112 AGCTTCATGTTGCATATTTCATTTAG 57.133 30.769 13.27 0.00 0.00 1.85
2891 4220 7.472334 AGTATGTGGATTCTTCAAAAGCAAT 57.528 32.000 0.00 0.00 0.00 3.56
2895 4224 7.707624 TGTGGATTCTTCAAAAGCAATATCT 57.292 32.000 0.00 0.00 0.00 1.98
2904 4233 6.053632 TCAAAAGCAATATCTCCACTCTGA 57.946 37.500 0.00 0.00 0.00 3.27
3001 4331 7.786178 TCTCATGTGTGCTATGTTTATTACC 57.214 36.000 0.00 0.00 0.00 2.85
3060 4390 0.468029 CAAAACACCTCCTGCCCACT 60.468 55.000 0.00 0.00 0.00 4.00
3065 4395 1.043116 CACCTCCTGCCCACTATCGA 61.043 60.000 0.00 0.00 0.00 3.59
3075 4405 2.034812 GCCCACTATCGACTCCAACTAG 59.965 54.545 0.00 0.00 0.00 2.57
3118 4448 4.933064 CGTCCGATCTGCCTCGCC 62.933 72.222 0.00 0.00 37.33 5.54
3134 4464 3.388841 CCGTCTGTGGCCTTAGGT 58.611 61.111 3.32 0.00 0.00 3.08
3135 4465 1.218316 CCGTCTGTGGCCTTAGGTC 59.782 63.158 3.32 0.00 0.00 3.85
3136 4466 1.541310 CCGTCTGTGGCCTTAGGTCA 61.541 60.000 0.00 0.00 33.55 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 6.292488 GCCATGATACATGCACTTAAAATTGC 60.292 38.462 0.00 0.00 39.33 3.56
64 65 6.468333 AATTGCCATGATACATGCACTTAA 57.532 33.333 0.00 0.00 32.63 1.85
86 87 7.232534 AGACTTGCCATGAACCATAAACTAAAA 59.767 33.333 0.00 0.00 0.00 1.52
106 107 6.171213 ACGGGGAATTAAGAAACTAGACTTG 58.829 40.000 0.00 0.00 0.00 3.16
108 109 6.370186 AACGGGGAATTAAGAAACTAGACT 57.630 37.500 0.00 0.00 0.00 3.24
174 175 6.186957 TGAAGTTGCCATGGTATATTTCAGT 58.813 36.000 14.67 0.00 0.00 3.41
177 178 6.095440 ACACTGAAGTTGCCATGGTATATTTC 59.905 38.462 14.67 12.86 0.00 2.17
185 186 3.317711 TGTTTACACTGAAGTTGCCATGG 59.682 43.478 7.63 7.63 0.00 3.66
214 215 7.878477 AAACTTGTCTATTGCACATGAATTG 57.122 32.000 0.00 0.00 0.00 2.32
304 310 6.451064 AGATCCGTTTTCACCATTAAATCC 57.549 37.500 0.00 0.00 0.00 3.01
314 320 7.873739 AATTTGATTGAAGATCCGTTTTCAC 57.126 32.000 0.00 0.00 33.36 3.18
384 390 0.756294 CATGCATGCATGTGGGGATT 59.244 50.000 40.30 14.92 46.20 3.01
411 417 0.458889 TAACATACAGACCGCGCCAC 60.459 55.000 0.00 0.00 0.00 5.01
441 447 1.602605 GTGTAAGCCAAACCCGCCT 60.603 57.895 0.00 0.00 0.00 5.52
470 476 0.669625 AGAAGGACAACGCTAACGCC 60.670 55.000 0.00 0.00 45.53 5.68
482 488 3.568538 TCACGTACGCTAAAAGAAGGAC 58.431 45.455 16.72 0.00 0.00 3.85
495 501 6.633668 AAAGAAATCTCAGAATCACGTACG 57.366 37.500 15.01 15.01 0.00 3.67
558 564 4.383850 AGAGGTCTCAGAATCATGTTCG 57.616 45.455 0.55 0.00 0.00 3.95
575 581 5.106157 ACGTGCCTCATAAATGAAAAAGAGG 60.106 40.000 0.00 0.00 44.19 3.69
578 584 5.698832 TCACGTGCCTCATAAATGAAAAAG 58.301 37.500 11.67 0.00 36.18 2.27
613 623 6.037098 CGGTAAAAGAAGAGATCTCATCGTT 58.963 40.000 24.39 21.48 37.42 3.85
614 624 5.125739 ACGGTAAAAGAAGAGATCTCATCGT 59.874 40.000 24.39 17.00 37.42 3.73
635 645 2.996155 ACTGAGAATAATCGCGTACGG 58.004 47.619 18.39 7.41 40.63 4.02
637 647 7.447243 AAGTAAACTGAGAATAATCGCGTAC 57.553 36.000 5.77 0.00 0.00 3.67
647 657 7.500559 ACAGCTCAAGAAAAGTAAACTGAGAAT 59.499 33.333 1.21 0.00 0.00 2.40
651 661 6.112734 TCACAGCTCAAGAAAAGTAAACTGA 58.887 36.000 0.00 0.00 0.00 3.41
652 662 6.363577 TCACAGCTCAAGAAAAGTAAACTG 57.636 37.500 0.00 0.00 0.00 3.16
659 669 5.936686 TCAAGATCACAGCTCAAGAAAAG 57.063 39.130 0.00 0.00 0.00 2.27
666 676 4.465305 TCTCAGAATCAAGATCACAGCTCA 59.535 41.667 0.00 0.00 0.00 4.26
772 783 1.269102 GCACCATACGCTATCACGTCT 60.269 52.381 0.00 0.00 44.43 4.18
773 784 1.129326 GCACCATACGCTATCACGTC 58.871 55.000 0.00 0.00 44.43 4.34
827 847 9.615779 CGTACTAAAAGATACTTATTTTGCGAC 57.384 33.333 0.00 0.00 31.41 5.19
847 867 5.756833 TGCGTCTCATCTAATTCTCGTACTA 59.243 40.000 0.00 0.00 0.00 1.82
848 868 4.575236 TGCGTCTCATCTAATTCTCGTACT 59.425 41.667 0.00 0.00 0.00 2.73
849 869 4.671516 GTGCGTCTCATCTAATTCTCGTAC 59.328 45.833 0.00 0.00 0.00 3.67
850 870 4.334481 TGTGCGTCTCATCTAATTCTCGTA 59.666 41.667 0.00 0.00 0.00 3.43
851 871 3.128764 TGTGCGTCTCATCTAATTCTCGT 59.871 43.478 0.00 0.00 0.00 4.18
852 872 3.483922 GTGTGCGTCTCATCTAATTCTCG 59.516 47.826 0.00 0.00 0.00 4.04
853 873 4.502282 CAGTGTGCGTCTCATCTAATTCTC 59.498 45.833 0.00 0.00 0.00 2.87
854 874 4.428209 CAGTGTGCGTCTCATCTAATTCT 58.572 43.478 0.00 0.00 0.00 2.40
855 875 3.000724 GCAGTGTGCGTCTCATCTAATTC 59.999 47.826 0.00 0.00 31.71 2.17
856 876 2.932614 GCAGTGTGCGTCTCATCTAATT 59.067 45.455 0.00 0.00 31.71 1.40
895 915 5.634859 GGATTTTAATTGGTGTGAGTTGCTG 59.365 40.000 0.00 0.00 0.00 4.41
1043 1063 3.322466 CTTCGTCCCACCCTGGCT 61.322 66.667 0.00 0.00 35.79 4.75
1071 1091 1.511305 CACTATGGACGCGGTCACT 59.489 57.895 12.47 1.62 33.68 3.41
1172 1192 2.496817 GGAGCGCGAACATCTCCT 59.503 61.111 18.86 0.59 42.31 3.69
1213 1233 2.741517 CGTACTGCATGTCATTGTTGGA 59.258 45.455 0.00 0.00 0.00 3.53
1372 1407 1.202463 AGAGCGGATGATGAAGAACCG 60.202 52.381 0.00 0.00 45.26 4.44
1374 1409 5.773575 TGTATAGAGCGGATGATGAAGAAC 58.226 41.667 0.00 0.00 0.00 3.01
1413 1448 0.664761 GTTGGGATCCATGCATGTCG 59.335 55.000 24.58 11.03 31.53 4.35
1473 2750 2.440409 CAGGCTTACAGCATTCTTGGT 58.560 47.619 0.00 0.00 44.75 3.67
1487 2764 0.832135 TCACCGTCTTCTCCAGGCTT 60.832 55.000 0.00 0.00 0.00 4.35
1586 2863 1.688772 TGCCGTAGTAGGACATCCTC 58.311 55.000 2.97 0.00 44.77 3.71
2157 3469 1.446272 GAGTTCCTTCCGCGGTCAG 60.446 63.158 27.15 21.31 0.00 3.51
2271 3600 6.927933 AAACGTCTGAACAAAACTGAAAAG 57.072 33.333 0.00 0.00 0.00 2.27
2327 3656 5.455056 ACGTCAGATTTGTAGTCAAGTCT 57.545 39.130 1.25 1.25 46.50 3.24
2409 3738 7.871853 ACAAAACACTGCTAGTATAAACTTGG 58.128 34.615 0.00 0.00 37.15 3.61
2423 3752 3.923017 AGCCTATTGACAAAACACTGC 57.077 42.857 0.00 0.00 0.00 4.40
2445 3774 4.980805 TGCCCTCGTGGTTGCGAC 62.981 66.667 2.33 0.00 36.80 5.19
2464 3793 6.507568 ACCTGGGGATAATAAATTGACCAAA 58.492 36.000 0.00 0.00 0.00 3.28
2512 3841 5.140454 AGTACAAATTATTCCATGGCTCCC 58.860 41.667 6.96 0.00 0.00 4.30
2568 3897 9.425893 CATGTCTAATCATGATTACGAAAACAC 57.574 33.333 21.67 12.43 45.41 3.32
2679 4008 4.517453 ACCTAAGCATCGATCACTCTCTAC 59.483 45.833 0.00 0.00 0.00 2.59
2914 4243 8.792633 TCCATTGTAATAACCATTTGCTATAGC 58.207 33.333 18.18 18.18 42.50 2.97
3001 4331 2.866762 GCCTTTGGCTTCAGTATAGTCG 59.133 50.000 0.73 0.00 46.69 4.18
3031 4361 2.158726 GGAGGTGTTTTGGGTGTGACTA 60.159 50.000 0.00 0.00 0.00 2.59
3060 4390 3.703052 GGAAACCCTAGTTGGAGTCGATA 59.297 47.826 0.00 0.00 35.97 2.92
3102 4432 4.933064 CGGCGAGGCAGATCGGAC 62.933 72.222 0.00 0.00 42.94 4.79
3105 4435 3.893763 AGACGGCGAGGCAGATCG 61.894 66.667 16.62 1.29 45.48 3.69
3106 4436 2.279120 CAGACGGCGAGGCAGATC 60.279 66.667 16.62 0.00 0.00 2.75
3117 4447 1.218316 GACCTAAGGCCACAGACGG 59.782 63.158 5.01 0.00 0.00 4.79
3118 4448 1.972198 TGACCTAAGGCCACAGACG 59.028 57.895 5.01 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.