Multiple sequence alignment - TraesCS2D01G057800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G057800 chr2D 100.000 3115 0 0 1 3115 22963191 22960077 0.000000e+00 5753.0
1 TraesCS2D01G057800 chr2D 89.018 601 36 10 1805 2401 22926725 22926151 0.000000e+00 717.0
2 TraesCS2D01G057800 chr2D 86.094 489 34 14 1179 1639 22927209 22926727 2.160000e-136 496.0
3 TraesCS2D01G057800 chr2D 93.038 158 10 1 1646 1803 445733827 445733671 2.420000e-56 230.0
4 TraesCS2D01G057800 chr2D 85.938 128 16 2 1011 1137 22952468 22952342 5.420000e-28 135.0
5 TraesCS2D01G057800 chr2D 97.436 78 2 0 3038 3115 394574669 394574592 1.950000e-27 134.0
6 TraesCS2D01G057800 chr2A 85.218 1671 135 55 26 1639 24531073 24529458 0.000000e+00 1615.0
7 TraesCS2D01G057800 chr2A 90.581 637 38 5 1811 2446 24529450 24528835 0.000000e+00 824.0
8 TraesCS2D01G057800 chr2A 90.449 356 28 4 195 546 269268817 269269170 6.080000e-127 464.0
9 TraesCS2D01G057800 chr2A 90.169 356 29 5 195 546 269306591 269306944 2.830000e-125 459.0
10 TraesCS2D01G057800 chr2A 95.238 42 2 0 2443 2484 113363551 113363592 2.000000e-07 67.6
11 TraesCS2D01G057800 chr2B 85.455 1485 106 44 18 1432 37431193 37432637 0.000000e+00 1445.0
12 TraesCS2D01G057800 chr2B 88.946 579 42 13 2476 3040 232453455 232454025 0.000000e+00 695.0
13 TraesCS2D01G057800 chr2B 88.153 574 52 8 2479 3040 82766065 82765496 0.000000e+00 669.0
14 TraesCS2D01G057800 chr2B 90.588 170 10 5 1635 1803 708240682 708240518 1.450000e-53 220.0
15 TraesCS2D01G057800 chr2B 93.182 88 2 4 3024 3111 90196869 90196952 3.260000e-25 126.0
16 TraesCS2D01G057800 chr2B 91.429 70 6 0 1359 1428 617124436 617124367 2.560000e-16 97.1
17 TraesCS2D01G057800 chr4D 94.159 565 26 5 2480 3040 468857012 468857573 0.000000e+00 854.0
18 TraesCS2D01G057800 chr4D 92.405 158 10 2 1646 1803 58643912 58643757 1.120000e-54 224.0
19 TraesCS2D01G057800 chr4D 88.764 178 14 5 1631 1808 68663987 68663816 2.430000e-51 213.0
20 TraesCS2D01G057800 chr4D 94.048 84 5 0 3032 3115 468858046 468858129 9.070000e-26 128.0
21 TraesCS2D01G057800 chr1D 92.527 562 22 11 2479 3040 41345853 41346394 0.000000e+00 787.0
22 TraesCS2D01G057800 chr1D 95.238 84 4 0 3032 3115 41346560 41346643 1.950000e-27 134.0
23 TraesCS2D01G057800 chr3B 89.753 566 45 8 2479 3040 661209109 661208553 0.000000e+00 712.0
24 TraesCS2D01G057800 chr3B 88.752 569 45 14 2479 3038 71326981 71326423 0.000000e+00 678.0
25 TraesCS2D01G057800 chr3B 93.182 44 3 0 2441 2484 771412438 771412395 7.210000e-07 65.8
26 TraesCS2D01G057800 chr3B 86.207 58 4 4 2446 2500 334013714 334013658 3.350000e-05 60.2
27 TraesCS2D01G057800 chr5B 88.636 572 49 8 2479 3040 524467084 524466519 0.000000e+00 682.0
28 TraesCS2D01G057800 chr6D 88.850 565 48 11 2479 3040 12559632 12559080 0.000000e+00 680.0
29 TraesCS2D01G057800 chr6D 90.588 170 12 2 1635 1804 422936401 422936566 4.040000e-54 222.0
30 TraesCS2D01G057800 chr1B 88.408 578 41 16 2476 3040 111966165 111966729 0.000000e+00 673.0
31 TraesCS2D01G057800 chr1B 94.048 84 5 0 3032 3115 36876666 36876749 9.070000e-26 128.0
32 TraesCS2D01G057800 chr1B 94.048 84 5 0 3032 3115 629694466 629694383 9.070000e-26 128.0
33 TraesCS2D01G057800 chrUn 90.449 356 27 6 195 546 295944470 295944822 2.190000e-126 462.0
34 TraesCS2D01G057800 chrUn 90.423 355 26 6 198 546 265948440 265948088 7.870000e-126 460.0
35 TraesCS2D01G057800 chrUn 97.436 39 1 0 2408 2446 351714007 351713969 2.000000e-07 67.6
36 TraesCS2D01G057800 chr4A 90.652 353 26 6 198 546 611288985 611288636 2.190000e-126 462.0
37 TraesCS2D01G057800 chr7A 90.169 356 29 4 195 546 199440084 199440437 2.830000e-125 459.0
38 TraesCS2D01G057800 chr7A 86.441 59 2 6 2446 2500 293543702 293543646 3.350000e-05 60.2
39 TraesCS2D01G057800 chr3A 90.169 356 29 4 195 546 689755022 689755375 2.830000e-125 459.0
40 TraesCS2D01G057800 chr6B 79.277 415 34 22 116 519 76042675 76042302 3.100000e-60 243.0
41 TraesCS2D01G057800 chr6B 100.000 38 0 0 2447 2484 704691848 704691885 1.550000e-08 71.3
42 TraesCS2D01G057800 chr4B 93.082 159 10 1 1646 1804 63753846 63754003 6.720000e-57 231.0
43 TraesCS2D01G057800 chr4B 93.038 158 10 1 1646 1803 660120756 660120600 2.420000e-56 230.0
44 TraesCS2D01G057800 chr4B 93.103 116 8 0 671 786 597430730 597430845 1.490000e-38 171.0
45 TraesCS2D01G057800 chr4B 94.048 84 5 0 3032 3115 275374389 275374472 9.070000e-26 128.0
46 TraesCS2D01G057800 chr3D 92.453 159 11 1 1646 1804 238999419 238999576 3.130000e-55 226.0
47 TraesCS2D01G057800 chr3D 95.238 42 2 0 2443 2484 607415060 607415101 2.000000e-07 67.6
48 TraesCS2D01G057800 chr5D 91.304 161 13 1 1646 1806 539916008 539915849 5.230000e-53 219.0
49 TraesCS2D01G057800 chr5D 86.207 58 4 4 2446 2500 542605472 542605416 3.350000e-05 60.2
50 TraesCS2D01G057800 chr6A 94.048 84 5 0 3032 3115 583039594 583039677 9.070000e-26 128.0
51 TraesCS2D01G057800 chr6A 97.436 39 1 0 2446 2484 340169044 340169006 2.000000e-07 67.6
52 TraesCS2D01G057800 chr1A 94.048 84 5 0 3032 3115 561733979 561733896 9.070000e-26 128.0
53 TraesCS2D01G057800 chr7D 93.182 44 3 0 2441 2484 533010824 533010867 7.210000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G057800 chr2D 22960077 22963191 3114 True 5753.0 5753 100.0000 1 3115 1 chr2D.!!$R2 3114
1 TraesCS2D01G057800 chr2D 22926151 22927209 1058 True 606.5 717 87.5560 1179 2401 2 chr2D.!!$R5 1222
2 TraesCS2D01G057800 chr2A 24528835 24531073 2238 True 1219.5 1615 87.8995 26 2446 2 chr2A.!!$R1 2420
3 TraesCS2D01G057800 chr2B 37431193 37432637 1444 False 1445.0 1445 85.4550 18 1432 1 chr2B.!!$F1 1414
4 TraesCS2D01G057800 chr2B 232453455 232454025 570 False 695.0 695 88.9460 2476 3040 1 chr2B.!!$F3 564
5 TraesCS2D01G057800 chr2B 82765496 82766065 569 True 669.0 669 88.1530 2479 3040 1 chr2B.!!$R1 561
6 TraesCS2D01G057800 chr4D 468857012 468858129 1117 False 491.0 854 94.1035 2480 3115 2 chr4D.!!$F1 635
7 TraesCS2D01G057800 chr1D 41345853 41346643 790 False 460.5 787 93.8825 2479 3115 2 chr1D.!!$F1 636
8 TraesCS2D01G057800 chr3B 661208553 661209109 556 True 712.0 712 89.7530 2479 3040 1 chr3B.!!$R3 561
9 TraesCS2D01G057800 chr3B 71326423 71326981 558 True 678.0 678 88.7520 2479 3038 1 chr3B.!!$R1 559
10 TraesCS2D01G057800 chr5B 524466519 524467084 565 True 682.0 682 88.6360 2479 3040 1 chr5B.!!$R1 561
11 TraesCS2D01G057800 chr6D 12559080 12559632 552 True 680.0 680 88.8500 2479 3040 1 chr6D.!!$R1 561
12 TraesCS2D01G057800 chr1B 111966165 111966729 564 False 673.0 673 88.4080 2476 3040 1 chr1B.!!$F2 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
476 485 0.109086 CTGATCCGAGTTCGCACTGT 60.109 55.0 0.0 0.0 38.18 3.55 F
668 691 0.252103 TCACCTCCCCTACACAGGTC 60.252 60.0 0.0 0.0 38.57 3.85 F
1654 1779 0.033306 ACTACTCCCTCCTCCGTTCC 60.033 60.0 0.0 0.0 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 1351 0.026285 GCGATAAATCTGCGCGTGTT 59.974 50.0 8.43 0.0 41.37 3.32 R
1945 2070 0.041663 CACACGGCGGTTACAACTTG 60.042 55.0 13.24 0.0 0.00 3.16 R
2714 2856 1.246056 ACACGCGGTTCTACAGCCTA 61.246 55.0 12.47 0.0 35.89 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.143333 GCGCTCGCTCCCTTGGTA 62.143 66.667 0.00 0.00 38.26 3.25
21 22 2.202756 CGCTCGCTCCCTTGGTAC 60.203 66.667 0.00 0.00 0.00 3.34
22 23 2.978824 GCTCGCTCCCTTGGTACA 59.021 61.111 0.00 0.00 0.00 2.90
65 66 1.216678 TGCCCCTTTTGGTTCTTCAGA 59.783 47.619 0.00 0.00 38.10 3.27
67 68 1.880027 CCCCTTTTGGTTCTTCAGACG 59.120 52.381 0.00 0.00 38.10 4.18
77 78 7.979115 TTGGTTCTTCAGACGTTTTATTTTG 57.021 32.000 0.00 0.00 0.00 2.44
80 81 6.142320 GGTTCTTCAGACGTTTTATTTTGCAG 59.858 38.462 0.00 0.00 0.00 4.41
233 236 5.912149 ACCTGAATGGGCTAGAATATTGA 57.088 39.130 0.00 0.00 41.11 2.57
237 240 7.786464 ACCTGAATGGGCTAGAATATTGATTTT 59.214 33.333 0.00 0.00 41.11 1.82
281 284 4.417437 AGGTTCTGACTGTGTACTACCAT 58.583 43.478 0.00 0.00 0.00 3.55
285 288 1.553248 TGACTGTGTACTACCATGCCC 59.447 52.381 0.00 0.00 0.00 5.36
292 295 4.165180 TGTGTACTACCATGCCCAATATGT 59.835 41.667 0.00 0.00 0.00 2.29
308 312 5.987953 CCAATATGTATGACAGTGTCTCCAG 59.012 44.000 23.29 6.23 33.15 3.86
309 313 6.407412 CCAATATGTATGACAGTGTCTCCAGT 60.407 42.308 23.29 9.88 33.15 4.00
310 314 7.201911 CCAATATGTATGACAGTGTCTCCAGTA 60.202 40.741 23.29 11.55 33.15 2.74
336 340 4.040461 TGCCTTATCCACCTTATGCTAGAC 59.960 45.833 0.00 0.00 0.00 2.59
405 414 3.944250 AACCTTGGCATCGCTGGGG 62.944 63.158 0.00 0.00 0.00 4.96
408 417 3.643595 CTTGGCATCGCTGGGGGAA 62.644 63.158 0.00 0.00 0.00 3.97
476 485 0.109086 CTGATCCGAGTTCGCACTGT 60.109 55.000 0.00 0.00 38.18 3.55
523 532 6.155221 TCAGCACCTAATTCAGTAGAGATGTT 59.845 38.462 0.00 0.00 0.00 2.71
577 587 2.369394 CCCTCAAGCAACCTATGAACC 58.631 52.381 0.00 0.00 0.00 3.62
622 645 1.549170 ACGAACTAACATCGGAGCCTT 59.451 47.619 0.00 0.00 44.32 4.35
651 674 1.377202 GCCCCGAAATGAGCACTCA 60.377 57.895 2.25 2.25 44.59 3.41
660 683 0.339859 ATGAGCACTCACCTCCCCTA 59.660 55.000 1.71 0.00 43.11 3.53
661 684 0.614979 TGAGCACTCACCTCCCCTAC 60.615 60.000 0.00 0.00 34.14 3.18
662 685 0.614979 GAGCACTCACCTCCCCTACA 60.615 60.000 0.00 0.00 0.00 2.74
667 690 0.252284 CTCACCTCCCCTACACAGGT 60.252 60.000 0.00 0.00 41.52 4.00
668 691 0.252103 TCACCTCCCCTACACAGGTC 60.252 60.000 0.00 0.00 38.57 3.85
684 707 5.104485 ACACAGGTCTAAAAGAACTCACCTT 60.104 40.000 0.00 0.00 37.92 3.50
689 712 4.578928 GTCTAAAAGAACTCACCTTTGGCA 59.421 41.667 0.00 0.00 34.42 4.92
918 958 1.772182 CTCGCTCAGTCGTTCTGTTT 58.228 50.000 9.34 0.00 43.97 2.83
991 1037 2.217510 ATATATCCGCCTCGACCACT 57.782 50.000 0.00 0.00 0.00 4.00
1213 1283 3.403558 GCGAGGAAGAAGCCCCCT 61.404 66.667 0.00 0.00 0.00 4.79
1214 1284 2.904131 CGAGGAAGAAGCCCCCTC 59.096 66.667 0.00 0.00 42.24 4.30
1276 1346 2.335712 GGTTAGTCCGTCCGTCCGT 61.336 63.158 0.00 0.00 0.00 4.69
1277 1347 1.581447 GTTAGTCCGTCCGTCCGTT 59.419 57.895 0.00 0.00 0.00 4.44
1279 1349 1.865788 TTAGTCCGTCCGTCCGTTGG 61.866 60.000 0.00 0.00 0.00 3.77
1281 1351 2.282110 TCCGTCCGTCCGTTGGTA 60.282 61.111 0.00 0.00 0.00 3.25
1282 1352 1.900981 TCCGTCCGTCCGTTGGTAA 60.901 57.895 0.00 0.00 0.00 2.85
1283 1353 1.734117 CCGTCCGTCCGTTGGTAAC 60.734 63.158 0.00 0.00 0.00 2.50
1306 1388 1.532868 GCGCAGATTTATCGCTGGATT 59.467 47.619 0.30 0.00 44.79 3.01
1307 1389 2.031682 GCGCAGATTTATCGCTGGATTT 60.032 45.455 0.30 0.00 44.79 2.17
1311 1393 5.504665 CGCAGATTTATCGCTGGATTTTTCT 60.505 40.000 0.00 0.00 34.00 2.52
1319 1404 1.344114 GCTGGATTTTTCTTGGTGGCA 59.656 47.619 0.00 0.00 0.00 4.92
1357 1445 1.592743 CTGCTCTGCTCTGCTCTGT 59.407 57.895 0.00 0.00 0.00 3.41
1436 1524 1.376037 CTTCCCCTGACGCCTTGAC 60.376 63.158 0.00 0.00 0.00 3.18
1494 1589 1.756375 CTCTGTACGCCGCATCTTGC 61.756 60.000 0.00 0.00 40.69 4.01
1512 1607 2.811317 GACTTCCTCCGTGCTGCG 60.811 66.667 0.00 0.00 40.95 5.18
1576 1689 1.133790 GTGGGCAGAAGAATCATGTGC 59.866 52.381 0.00 0.00 0.00 4.57
1580 1693 1.133790 GCAGAAGAATCATGTGCCCAC 59.866 52.381 0.00 0.00 0.00 4.61
1583 1696 1.747355 GAAGAATCATGTGCCCACCAG 59.253 52.381 0.00 0.00 0.00 4.00
1588 1701 0.322456 TCATGTGCCCACCAGTTAGC 60.322 55.000 0.00 0.00 0.00 3.09
1590 1703 1.500783 ATGTGCCCACCAGTTAGCCT 61.501 55.000 0.00 0.00 0.00 4.58
1591 1704 1.377333 GTGCCCACCAGTTAGCCTC 60.377 63.158 0.00 0.00 0.00 4.70
1595 1708 1.079127 CCACCAGTTAGCCTCGGTG 60.079 63.158 0.00 0.00 46.93 4.94
1639 1764 4.829064 TTTGGTCAAGCATGTCAACTAC 57.171 40.909 0.00 0.00 0.00 2.73
1640 1765 3.769739 TGGTCAAGCATGTCAACTACT 57.230 42.857 0.00 0.00 0.00 2.57
1641 1766 3.664107 TGGTCAAGCATGTCAACTACTC 58.336 45.455 0.00 0.00 0.00 2.59
1642 1767 3.003480 GGTCAAGCATGTCAACTACTCC 58.997 50.000 0.00 0.00 0.00 3.85
1643 1768 3.003480 GTCAAGCATGTCAACTACTCCC 58.997 50.000 0.00 0.00 0.00 4.30
1644 1769 2.906389 TCAAGCATGTCAACTACTCCCT 59.094 45.455 0.00 0.00 0.00 4.20
1645 1770 3.055819 TCAAGCATGTCAACTACTCCCTC 60.056 47.826 0.00 0.00 0.00 4.30
1646 1771 1.834263 AGCATGTCAACTACTCCCTCC 59.166 52.381 0.00 0.00 0.00 4.30
1647 1772 1.834263 GCATGTCAACTACTCCCTCCT 59.166 52.381 0.00 0.00 0.00 3.69
1648 1773 2.159028 GCATGTCAACTACTCCCTCCTC 60.159 54.545 0.00 0.00 0.00 3.71
1649 1774 2.233305 TGTCAACTACTCCCTCCTCC 57.767 55.000 0.00 0.00 0.00 4.30
1650 1775 1.104630 GTCAACTACTCCCTCCTCCG 58.895 60.000 0.00 0.00 0.00 4.63
1651 1776 0.702902 TCAACTACTCCCTCCTCCGT 59.297 55.000 0.00 0.00 0.00 4.69
1652 1777 1.076677 TCAACTACTCCCTCCTCCGTT 59.923 52.381 0.00 0.00 0.00 4.44
1653 1778 1.477295 CAACTACTCCCTCCTCCGTTC 59.523 57.143 0.00 0.00 0.00 3.95
1654 1779 0.033306 ACTACTCCCTCCTCCGTTCC 60.033 60.000 0.00 0.00 0.00 3.62
1655 1780 0.259356 CTACTCCCTCCTCCGTTCCT 59.741 60.000 0.00 0.00 0.00 3.36
1656 1781 1.493871 CTACTCCCTCCTCCGTTCCTA 59.506 57.143 0.00 0.00 0.00 2.94
1657 1782 0.708802 ACTCCCTCCTCCGTTCCTAA 59.291 55.000 0.00 0.00 0.00 2.69
1658 1783 1.078324 ACTCCCTCCTCCGTTCCTAAA 59.922 52.381 0.00 0.00 0.00 1.85
1659 1784 2.292984 ACTCCCTCCTCCGTTCCTAAAT 60.293 50.000 0.00 0.00 0.00 1.40
1660 1785 3.052338 ACTCCCTCCTCCGTTCCTAAATA 60.052 47.826 0.00 0.00 0.00 1.40
1661 1786 3.303049 TCCCTCCTCCGTTCCTAAATAC 58.697 50.000 0.00 0.00 0.00 1.89
1662 1787 3.036091 CCCTCCTCCGTTCCTAAATACA 58.964 50.000 0.00 0.00 0.00 2.29
1663 1788 3.453353 CCCTCCTCCGTTCCTAAATACAA 59.547 47.826 0.00 0.00 0.00 2.41
1664 1789 4.443034 CCCTCCTCCGTTCCTAAATACAAG 60.443 50.000 0.00 0.00 0.00 3.16
1665 1790 4.161754 CCTCCTCCGTTCCTAAATACAAGT 59.838 45.833 0.00 0.00 0.00 3.16
1666 1791 5.334724 TCCTCCGTTCCTAAATACAAGTC 57.665 43.478 0.00 0.00 0.00 3.01
1667 1792 5.021458 TCCTCCGTTCCTAAATACAAGTCT 58.979 41.667 0.00 0.00 0.00 3.24
1668 1793 5.482878 TCCTCCGTTCCTAAATACAAGTCTT 59.517 40.000 0.00 0.00 0.00 3.01
1669 1794 6.013984 TCCTCCGTTCCTAAATACAAGTCTTT 60.014 38.462 0.00 0.00 0.00 2.52
1670 1795 6.092259 CCTCCGTTCCTAAATACAAGTCTTTG 59.908 42.308 0.00 0.00 40.24 2.77
1671 1796 5.410439 TCCGTTCCTAAATACAAGTCTTTGC 59.590 40.000 0.00 0.00 37.85 3.68
1672 1797 5.180492 CCGTTCCTAAATACAAGTCTTTGCA 59.820 40.000 0.00 0.00 37.85 4.08
1673 1798 6.307155 CGTTCCTAAATACAAGTCTTTGCAG 58.693 40.000 0.00 0.00 37.85 4.41
1674 1799 6.147164 CGTTCCTAAATACAAGTCTTTGCAGA 59.853 38.462 0.00 0.00 37.85 4.26
1675 1800 7.522374 GTTCCTAAATACAAGTCTTTGCAGAG 58.478 38.462 0.00 0.00 37.85 3.35
1676 1801 7.004555 TCCTAAATACAAGTCTTTGCAGAGA 57.995 36.000 2.15 2.15 37.85 3.10
1677 1802 7.624549 TCCTAAATACAAGTCTTTGCAGAGAT 58.375 34.615 10.53 0.00 37.85 2.75
1678 1803 7.766278 TCCTAAATACAAGTCTTTGCAGAGATC 59.234 37.037 10.53 4.68 37.85 2.75
1679 1804 7.768120 CCTAAATACAAGTCTTTGCAGAGATCT 59.232 37.037 10.53 6.85 37.85 2.75
1680 1805 7.608308 AAATACAAGTCTTTGCAGAGATCTC 57.392 36.000 15.29 15.29 37.85 2.75
1681 1806 4.613925 ACAAGTCTTTGCAGAGATCTCA 57.386 40.909 24.39 1.70 37.85 3.27
1682 1807 4.314121 ACAAGTCTTTGCAGAGATCTCAC 58.686 43.478 24.39 15.91 37.85 3.51
1683 1808 4.040217 ACAAGTCTTTGCAGAGATCTCACT 59.960 41.667 24.39 13.70 37.85 3.41
1684 1809 5.244851 ACAAGTCTTTGCAGAGATCTCACTA 59.755 40.000 24.39 10.21 37.85 2.74
1685 1810 6.070881 ACAAGTCTTTGCAGAGATCTCACTAT 60.071 38.462 24.39 0.57 37.85 2.12
1686 1811 5.904941 AGTCTTTGCAGAGATCTCACTATG 58.095 41.667 24.39 14.43 33.03 2.23
1687 1812 5.655974 AGTCTTTGCAGAGATCTCACTATGA 59.344 40.000 24.39 15.59 31.75 2.15
1688 1813 6.154192 AGTCTTTGCAGAGATCTCACTATGAA 59.846 38.462 24.39 5.90 31.75 2.57
1689 1814 6.255453 GTCTTTGCAGAGATCTCACTATGAAC 59.745 42.308 24.39 10.89 31.75 3.18
1690 1815 4.662468 TGCAGAGATCTCACTATGAACC 57.338 45.455 24.39 2.82 31.75 3.62
1691 1816 4.026052 TGCAGAGATCTCACTATGAACCA 58.974 43.478 24.39 5.20 31.75 3.67
1692 1817 4.142071 TGCAGAGATCTCACTATGAACCAC 60.142 45.833 24.39 2.17 31.75 4.16
1693 1818 4.142071 GCAGAGATCTCACTATGAACCACA 60.142 45.833 24.39 0.00 31.75 4.17
1694 1819 5.453057 GCAGAGATCTCACTATGAACCACAT 60.453 44.000 24.39 0.00 42.39 3.21
1695 1820 6.239148 GCAGAGATCTCACTATGAACCACATA 60.239 42.308 24.39 0.00 40.07 2.29
1696 1821 7.144661 CAGAGATCTCACTATGAACCACATAC 58.855 42.308 24.39 0.00 40.07 2.39
1697 1822 6.016693 AGAGATCTCACTATGAACCACATACG 60.017 42.308 24.39 0.00 40.07 3.06
1698 1823 4.649088 TCTCACTATGAACCACATACGG 57.351 45.455 0.00 0.00 40.07 4.02
1699 1824 4.274978 TCTCACTATGAACCACATACGGA 58.725 43.478 0.00 0.00 40.07 4.69
1700 1825 4.097437 TCTCACTATGAACCACATACGGAC 59.903 45.833 0.00 0.00 40.07 4.79
1701 1826 3.113322 CACTATGAACCACATACGGACG 58.887 50.000 0.00 0.00 40.07 4.79
1702 1827 2.756760 ACTATGAACCACATACGGACGT 59.243 45.455 1.98 1.98 40.07 4.34
1703 1828 3.947196 ACTATGAACCACATACGGACGTA 59.053 43.478 7.05 7.05 40.07 3.57
1704 1829 4.581824 ACTATGAACCACATACGGACGTAT 59.418 41.667 11.25 11.25 41.49 3.06
1705 1830 5.764686 ACTATGAACCACATACGGACGTATA 59.235 40.000 15.98 1.02 39.07 1.47
1706 1831 4.291540 TGAACCACATACGGACGTATAC 57.708 45.455 15.98 0.00 39.07 1.47
1707 1832 3.693578 TGAACCACATACGGACGTATACA 59.306 43.478 15.98 7.96 39.07 2.29
1708 1833 3.976793 ACCACATACGGACGTATACAG 57.023 47.619 15.98 10.24 39.07 2.74
1709 1834 3.544684 ACCACATACGGACGTATACAGA 58.455 45.455 15.98 0.00 39.07 3.41
1710 1835 4.139786 ACCACATACGGACGTATACAGAT 58.860 43.478 15.98 0.72 39.07 2.90
1711 1836 4.023450 ACCACATACGGACGTATACAGATG 60.023 45.833 15.98 8.85 39.07 2.90
1712 1837 3.912563 CACATACGGACGTATACAGATGC 59.087 47.826 15.98 0.00 39.07 3.91
1713 1838 3.566742 ACATACGGACGTATACAGATGCA 59.433 43.478 15.98 0.00 39.07 3.96
1714 1839 4.217767 ACATACGGACGTATACAGATGCAT 59.782 41.667 15.98 0.00 39.07 3.96
1715 1840 3.728076 ACGGACGTATACAGATGCATT 57.272 42.857 0.00 0.00 0.00 3.56
1716 1841 4.054780 ACGGACGTATACAGATGCATTT 57.945 40.909 0.00 0.00 0.00 2.32
1717 1842 4.439057 ACGGACGTATACAGATGCATTTT 58.561 39.130 0.00 0.00 0.00 1.82
1718 1843 5.593968 ACGGACGTATACAGATGCATTTTA 58.406 37.500 0.00 0.00 0.00 1.52
1719 1844 5.690409 ACGGACGTATACAGATGCATTTTAG 59.310 40.000 0.00 0.00 0.00 1.85
1720 1845 5.918576 CGGACGTATACAGATGCATTTTAGA 59.081 40.000 0.00 0.00 0.00 2.10
1721 1846 6.088217 CGGACGTATACAGATGCATTTTAGAG 59.912 42.308 0.00 0.00 0.00 2.43
1722 1847 6.924060 GGACGTATACAGATGCATTTTAGAGT 59.076 38.462 0.00 0.00 0.00 3.24
1723 1848 7.096023 GGACGTATACAGATGCATTTTAGAGTG 60.096 40.741 0.00 0.00 0.00 3.51
1724 1849 7.265673 ACGTATACAGATGCATTTTAGAGTGT 58.734 34.615 0.00 0.00 0.00 3.55
1725 1850 8.410912 ACGTATACAGATGCATTTTAGAGTGTA 58.589 33.333 0.00 1.67 0.00 2.90
1726 1851 8.906693 CGTATACAGATGCATTTTAGAGTGTAG 58.093 37.037 0.00 0.00 0.00 2.74
1727 1852 9.967346 GTATACAGATGCATTTTAGAGTGTAGA 57.033 33.333 0.00 0.00 0.00 2.59
1730 1855 8.430801 ACAGATGCATTTTAGAGTGTAGATTC 57.569 34.615 0.00 0.00 0.00 2.52
1731 1856 8.043113 ACAGATGCATTTTAGAGTGTAGATTCA 58.957 33.333 0.00 0.00 0.00 2.57
1732 1857 8.333908 CAGATGCATTTTAGAGTGTAGATTCAC 58.666 37.037 0.00 0.00 38.46 3.18
1743 1868 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1744 1869 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1745 1870 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1746 1871 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1747 1872 3.438087 AGATTCACTCATTTTGCTCCGTG 59.562 43.478 0.00 0.00 0.00 4.94
1748 1873 2.254546 TCACTCATTTTGCTCCGTGT 57.745 45.000 0.00 0.00 0.00 4.49
1749 1874 1.872952 TCACTCATTTTGCTCCGTGTG 59.127 47.619 0.00 0.00 0.00 3.82
1750 1875 1.603802 CACTCATTTTGCTCCGTGTGT 59.396 47.619 0.00 0.00 0.00 3.72
1751 1876 2.805671 CACTCATTTTGCTCCGTGTGTA 59.194 45.455 0.00 0.00 0.00 2.90
1752 1877 3.067106 ACTCATTTTGCTCCGTGTGTAG 58.933 45.455 0.00 0.00 0.00 2.74
1753 1878 3.067106 CTCATTTTGCTCCGTGTGTAGT 58.933 45.455 0.00 0.00 0.00 2.73
1754 1879 3.472652 TCATTTTGCTCCGTGTGTAGTT 58.527 40.909 0.00 0.00 0.00 2.24
1755 1880 3.496884 TCATTTTGCTCCGTGTGTAGTTC 59.503 43.478 0.00 0.00 0.00 3.01
1756 1881 2.605837 TTTGCTCCGTGTGTAGTTCA 57.394 45.000 0.00 0.00 0.00 3.18
1757 1882 2.831685 TTGCTCCGTGTGTAGTTCAT 57.168 45.000 0.00 0.00 0.00 2.57
1758 1883 3.945981 TTGCTCCGTGTGTAGTTCATA 57.054 42.857 0.00 0.00 0.00 2.15
1759 1884 3.503827 TGCTCCGTGTGTAGTTCATAG 57.496 47.619 0.00 0.00 0.00 2.23
1760 1885 2.823747 TGCTCCGTGTGTAGTTCATAGT 59.176 45.455 0.00 0.00 0.00 2.12
1761 1886 3.179830 GCTCCGTGTGTAGTTCATAGTG 58.820 50.000 0.00 0.00 0.00 2.74
1762 1887 3.770666 CTCCGTGTGTAGTTCATAGTGG 58.229 50.000 0.00 0.00 0.00 4.00
1763 1888 3.423749 TCCGTGTGTAGTTCATAGTGGA 58.576 45.455 0.00 0.00 0.00 4.02
1764 1889 3.827876 TCCGTGTGTAGTTCATAGTGGAA 59.172 43.478 0.00 0.00 0.00 3.53
1765 1890 4.464951 TCCGTGTGTAGTTCATAGTGGAAT 59.535 41.667 0.00 0.00 0.00 3.01
1766 1891 4.804139 CCGTGTGTAGTTCATAGTGGAATC 59.196 45.833 0.00 0.00 0.00 2.52
1767 1892 5.394224 CCGTGTGTAGTTCATAGTGGAATCT 60.394 44.000 0.00 0.00 0.00 2.40
1768 1893 5.744345 CGTGTGTAGTTCATAGTGGAATCTC 59.256 44.000 0.00 0.00 0.00 2.75
1769 1894 6.404844 CGTGTGTAGTTCATAGTGGAATCTCT 60.405 42.308 0.00 0.00 0.00 3.10
1770 1895 7.201705 CGTGTGTAGTTCATAGTGGAATCTCTA 60.202 40.741 0.00 0.00 0.00 2.43
1771 1896 7.916450 GTGTGTAGTTCATAGTGGAATCTCTAC 59.084 40.741 0.00 0.00 30.52 2.59
1772 1897 7.614192 TGTGTAGTTCATAGTGGAATCTCTACA 59.386 37.037 0.00 0.00 34.35 2.74
1773 1898 8.467598 GTGTAGTTCATAGTGGAATCTCTACAA 58.532 37.037 0.00 0.00 36.49 2.41
1774 1899 9.031537 TGTAGTTCATAGTGGAATCTCTACAAA 57.968 33.333 0.00 0.00 34.07 2.83
1775 1900 9.871238 GTAGTTCATAGTGGAATCTCTACAAAA 57.129 33.333 0.00 0.00 30.38 2.44
1777 1902 8.816894 AGTTCATAGTGGAATCTCTACAAAAGA 58.183 33.333 0.00 0.00 29.47 2.52
1778 1903 8.874816 GTTCATAGTGGAATCTCTACAAAAGAC 58.125 37.037 0.00 0.00 29.47 3.01
1779 1904 8.367660 TCATAGTGGAATCTCTACAAAAGACT 57.632 34.615 0.00 0.00 29.47 3.24
1780 1905 8.816894 TCATAGTGGAATCTCTACAAAAGACTT 58.183 33.333 0.00 0.00 29.47 3.01
1781 1906 8.877779 CATAGTGGAATCTCTACAAAAGACTTG 58.122 37.037 0.00 0.00 29.47 3.16
1782 1907 6.831976 AGTGGAATCTCTACAAAAGACTTGT 58.168 36.000 0.00 0.00 36.49 3.16
1783 1908 7.963532 AGTGGAATCTCTACAAAAGACTTGTA 58.036 34.615 0.00 0.00 34.11 2.41
1784 1909 8.598041 AGTGGAATCTCTACAAAAGACTTGTAT 58.402 33.333 0.00 0.00 34.75 2.29
1785 1910 9.220767 GTGGAATCTCTACAAAAGACTTGTATT 57.779 33.333 0.00 0.00 34.75 1.89
1786 1911 9.793259 TGGAATCTCTACAAAAGACTTGTATTT 57.207 29.630 0.00 0.00 34.75 1.40
1793 1918 9.199982 TCTACAAAAGACTTGTATTTAGGAACG 57.800 33.333 0.00 0.00 34.75 3.95
1794 1919 7.198306 ACAAAAGACTTGTATTTAGGAACGG 57.802 36.000 0.00 0.00 0.00 4.44
1795 1920 6.993902 ACAAAAGACTTGTATTTAGGAACGGA 59.006 34.615 0.00 0.00 0.00 4.69
1796 1921 7.172703 ACAAAAGACTTGTATTTAGGAACGGAG 59.827 37.037 0.00 0.00 0.00 4.63
1797 1922 4.756502 AGACTTGTATTTAGGAACGGAGC 58.243 43.478 0.00 0.00 0.00 4.70
1798 1923 3.518590 ACTTGTATTTAGGAACGGAGCG 58.481 45.455 0.00 0.00 0.00 5.03
1799 1924 3.194116 ACTTGTATTTAGGAACGGAGCGA 59.806 43.478 0.00 0.00 0.00 4.93
1800 1925 3.431922 TGTATTTAGGAACGGAGCGAG 57.568 47.619 0.00 0.00 0.00 5.03
1801 1926 2.756760 TGTATTTAGGAACGGAGCGAGT 59.243 45.455 0.00 0.00 0.00 4.18
1802 1927 3.947196 TGTATTTAGGAACGGAGCGAGTA 59.053 43.478 0.00 0.00 0.00 2.59
1803 1928 2.927553 TTTAGGAACGGAGCGAGTAC 57.072 50.000 0.00 0.00 0.00 2.73
1842 1967 0.321919 TGTGCCTCTGCCTTGTGATC 60.322 55.000 0.00 0.00 36.33 2.92
1872 1997 2.288273 ACTACAGACCGCTCAAGTGTTC 60.288 50.000 0.00 0.00 0.00 3.18
1874 1999 1.006102 AGACCGCTCAAGTGTTCGG 60.006 57.895 10.73 10.73 46.61 4.30
1924 2049 5.878116 TGATTACAGTAGAAAATGGAACCGG 59.122 40.000 0.00 0.00 0.00 5.28
1927 2052 2.817258 CAGTAGAAAATGGAACCGGCAA 59.183 45.455 0.00 0.00 0.00 4.52
1939 2064 3.438360 GAACCGGCAACATCATCATTTC 58.562 45.455 0.00 0.00 0.00 2.17
1944 2069 4.438065 CCGGCAACATCATCATTTCGTTTA 60.438 41.667 0.00 0.00 0.00 2.01
1945 2070 4.495472 CGGCAACATCATCATTTCGTTTAC 59.505 41.667 0.00 0.00 0.00 2.01
1965 2090 1.778027 AAGTTGTAACCGCCGTGTGC 61.778 55.000 0.00 0.00 0.00 4.57
1975 2100 3.572539 CCGTGTGCGTGTGTTGCT 61.573 61.111 0.00 0.00 36.15 3.91
1976 2101 2.351097 CGTGTGCGTGTGTTGCTG 60.351 61.111 0.00 0.00 0.00 4.41
1977 2102 2.807906 CGTGTGCGTGTGTTGCTGA 61.808 57.895 0.00 0.00 0.00 4.26
1978 2103 1.648720 GTGTGCGTGTGTTGCTGAT 59.351 52.632 0.00 0.00 0.00 2.90
1979 2104 0.384725 GTGTGCGTGTGTTGCTGATC 60.385 55.000 0.00 0.00 0.00 2.92
1980 2105 0.813210 TGTGCGTGTGTTGCTGATCA 60.813 50.000 0.00 0.00 0.00 2.92
1991 2116 3.825585 TGTTGCTGATCAAATGTTGGCTA 59.174 39.130 0.00 0.00 36.26 3.93
2039 2164 2.125310 TCGCATACAACTGGCCGG 60.125 61.111 11.02 11.02 0.00 6.13
2066 2191 7.254932 GCTACAAGTTTATTGCTAGGGAATCAG 60.255 40.741 0.00 0.00 0.00 2.90
2085 2210 9.672086 GGAATCAGCATACTTAGATATACGATC 57.328 37.037 0.00 0.00 0.00 3.69
2279 2404 4.724399 TGGTACATCAAGTTGTCCAACAT 58.276 39.130 12.32 0.00 43.47 2.71
2386 2512 3.067106 ACCACTTTGCTGTGTTATCGAG 58.933 45.455 0.00 0.00 36.30 4.04
2419 2545 3.153919 TGTGGAAGGTATGTCTTTTGGC 58.846 45.455 0.00 0.00 0.00 4.52
2424 2550 3.874392 AGGTATGTCTTTTGGCATTGC 57.126 42.857 0.00 0.00 43.04 3.56
2446 2572 0.177604 CTTGGGCTAGGCTGACTCAG 59.822 60.000 16.80 1.21 34.12 3.35
2447 2573 0.252239 TTGGGCTAGGCTGACTCAGA 60.252 55.000 16.80 0.00 32.44 3.27
2448 2574 0.685785 TGGGCTAGGCTGACTCAGAG 60.686 60.000 16.80 0.00 32.44 3.35
2449 2575 1.441311 GGCTAGGCTGACTCAGAGC 59.559 63.158 10.45 9.57 32.44 4.09
2450 2576 1.326213 GGCTAGGCTGACTCAGAGCA 61.326 60.000 16.21 0.00 38.27 4.26
2451 2577 0.752054 GCTAGGCTGACTCAGAGCAT 59.248 55.000 10.45 0.00 38.27 3.79
2452 2578 1.269726 GCTAGGCTGACTCAGAGCATC 60.270 57.143 10.45 0.00 38.27 3.91
2531 2657 3.347405 CACGGCGCCCACGTTTTA 61.347 61.111 23.46 0.00 43.58 1.52
2714 2856 0.608130 TGCAGTTCTACATGCCGAGT 59.392 50.000 0.00 0.00 41.85 4.18
2847 3034 3.771491 CGTCCTCGTCGTCGTCGT 61.771 66.667 11.41 0.00 38.33 4.34
3016 3203 1.270732 GGCTATCTCCTCGTACTCCGA 60.271 57.143 0.00 0.00 45.00 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.143333 TACCAAGGGAGCGAGCGC 62.143 66.667 6.78 6.78 42.33 5.92
5 6 0.321298 TTTGTACCAAGGGAGCGAGC 60.321 55.000 0.00 0.00 0.00 5.03
6 7 2.178912 TTTTGTACCAAGGGAGCGAG 57.821 50.000 0.00 0.00 0.00 5.03
7 8 2.642154 TTTTTGTACCAAGGGAGCGA 57.358 45.000 0.00 0.00 0.00 4.93
31 32 1.360931 GGGGCATGAACAATTTGCGC 61.361 55.000 0.00 0.00 45.43 6.09
33 34 2.477845 AAGGGGCATGAACAATTTGC 57.522 45.000 0.00 0.00 35.64 3.68
65 66 6.861055 CAGTACCATTCTGCAAAATAAAACGT 59.139 34.615 0.00 0.00 0.00 3.99
67 68 8.587952 AACAGTACCATTCTGCAAAATAAAAC 57.412 30.769 0.00 0.00 36.50 2.43
77 78 2.778299 TGGTGAACAGTACCATTCTGC 58.222 47.619 7.90 2.44 43.00 4.26
233 236 4.984161 CGGTCTTGCAACATCTTCAAAAAT 59.016 37.500 0.00 0.00 0.00 1.82
237 240 2.571212 ACGGTCTTGCAACATCTTCAA 58.429 42.857 0.00 0.00 0.00 2.69
272 275 6.594159 GTCATACATATTGGGCATGGTAGTAC 59.406 42.308 0.00 0.00 0.00 2.73
281 284 4.164030 AGACACTGTCATACATATTGGGCA 59.836 41.667 11.80 0.00 34.60 5.36
285 288 6.577103 ACTGGAGACACTGTCATACATATTG 58.423 40.000 11.80 0.00 34.60 1.90
292 295 5.419542 GCAAATACTGGAGACACTGTCATA 58.580 41.667 11.80 0.00 34.60 2.15
308 312 5.770162 AGCATAAGGTGGATAAGGCAAATAC 59.230 40.000 0.00 0.00 0.00 1.89
309 313 5.952387 AGCATAAGGTGGATAAGGCAAATA 58.048 37.500 0.00 0.00 0.00 1.40
310 314 4.808042 AGCATAAGGTGGATAAGGCAAAT 58.192 39.130 0.00 0.00 0.00 2.32
336 340 3.270027 TCTGTTTCAGCCATACAATCCG 58.730 45.455 0.00 0.00 0.00 4.18
476 485 8.289618 GCTGAGAATGTTTTCTTATGTGTGTTA 58.710 33.333 0.00 0.00 42.34 2.41
548 558 3.732849 GCTTGAGGGGTGGAGGGG 61.733 72.222 0.00 0.00 0.00 4.79
552 562 0.474854 TAGGTTGCTTGAGGGGTGGA 60.475 55.000 0.00 0.00 0.00 4.02
554 564 1.281867 TCATAGGTTGCTTGAGGGGTG 59.718 52.381 0.00 0.00 0.00 4.61
555 565 1.668826 TCATAGGTTGCTTGAGGGGT 58.331 50.000 0.00 0.00 0.00 4.95
556 566 2.369394 GTTCATAGGTTGCTTGAGGGG 58.631 52.381 0.00 0.00 0.00 4.79
557 567 2.290896 TGGTTCATAGGTTGCTTGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
558 568 2.749621 GTGGTTCATAGGTTGCTTGAGG 59.250 50.000 0.00 0.00 0.00 3.86
577 587 4.264253 TCAGATAGGCAGAATTGGTTGTG 58.736 43.478 0.00 0.00 0.00 3.33
622 645 2.756321 TTTCGGGGCTGCAAATCGGA 62.756 55.000 0.50 0.00 0.00 4.55
625 648 0.817013 TCATTTCGGGGCTGCAAATC 59.183 50.000 0.50 0.00 0.00 2.17
660 683 4.409247 AGGTGAGTTCTTTTAGACCTGTGT 59.591 41.667 0.00 0.00 32.48 3.72
661 684 4.962155 AGGTGAGTTCTTTTAGACCTGTG 58.038 43.478 0.00 0.00 32.48 3.66
662 685 5.632034 AAGGTGAGTTCTTTTAGACCTGT 57.368 39.130 0.00 0.00 34.02 4.00
667 690 4.787551 TGCCAAAGGTGAGTTCTTTTAGA 58.212 39.130 0.00 0.00 32.72 2.10
668 691 4.022849 CCTGCCAAAGGTGAGTTCTTTTAG 60.023 45.833 0.00 0.00 41.74 1.85
801 824 2.427245 CGGAAGGGAGAGCCACGAT 61.427 63.158 0.00 0.00 35.15 3.73
906 942 1.228154 GGGCCCAAACAGAACGACT 60.228 57.895 19.95 0.00 0.00 4.18
1261 1331 2.334946 CCAACGGACGGACGGACTA 61.335 63.158 6.00 0.00 38.39 2.59
1276 1346 1.231221 AAATCTGCGCGTGTTACCAA 58.769 45.000 8.43 0.00 0.00 3.67
1277 1347 2.081725 TAAATCTGCGCGTGTTACCA 57.918 45.000 8.43 0.00 0.00 3.25
1279 1349 2.875633 CGATAAATCTGCGCGTGTTAC 58.124 47.619 8.43 0.00 0.00 2.50
1281 1351 0.026285 GCGATAAATCTGCGCGTGTT 59.974 50.000 8.43 0.00 41.37 3.32
1282 1352 1.636340 GCGATAAATCTGCGCGTGT 59.364 52.632 8.43 0.00 41.37 4.49
1283 1353 4.478933 GCGATAAATCTGCGCGTG 57.521 55.556 8.43 0.68 41.37 5.34
1287 1357 3.885484 AAATCCAGCGATAAATCTGCG 57.115 42.857 0.00 0.00 33.67 5.18
1288 1358 5.825507 AGAAAAATCCAGCGATAAATCTGC 58.174 37.500 0.00 0.50 0.00 4.26
1290 1360 6.378280 ACCAAGAAAAATCCAGCGATAAATCT 59.622 34.615 0.00 0.00 0.00 2.40
1291 1361 6.473455 CACCAAGAAAAATCCAGCGATAAATC 59.527 38.462 0.00 0.00 0.00 2.17
1306 1388 1.032014 GAGCACTGCCACCAAGAAAA 58.968 50.000 0.00 0.00 0.00 2.29
1307 1389 0.106769 TGAGCACTGCCACCAAGAAA 60.107 50.000 0.00 0.00 0.00 2.52
1311 1393 1.102809 CAGTTGAGCACTGCCACCAA 61.103 55.000 0.00 0.00 46.70 3.67
1319 1404 0.107456 CACCCAGTCAGTTGAGCACT 59.893 55.000 0.00 0.00 35.35 4.40
1332 1420 2.436292 GAGCAGAGCAGCACCCAG 60.436 66.667 0.00 0.00 36.85 4.45
1357 1445 1.446099 GACCGCGAGATCTGCACAA 60.446 57.895 8.23 0.00 0.00 3.33
1436 1524 1.939785 GAGCAGCGTACCGTCATCG 60.940 63.158 0.00 0.00 0.00 3.84
1472 1560 3.792053 GATGCGGCGTACAGAGGGG 62.792 68.421 9.37 0.00 0.00 4.79
1473 1561 2.279517 GATGCGGCGTACAGAGGG 60.280 66.667 9.37 0.00 0.00 4.30
1474 1562 1.141881 AAGATGCGGCGTACAGAGG 59.858 57.895 9.37 0.00 0.00 3.69
1494 1589 2.811317 GCAGCACGGAGGAAGTCG 60.811 66.667 0.00 0.00 0.00 4.18
1576 1689 2.291043 ACCGAGGCTAACTGGTGGG 61.291 63.158 0.00 0.00 31.94 4.61
1580 1693 1.448540 CTGCACCGAGGCTAACTGG 60.449 63.158 0.00 0.00 34.04 4.00
1583 1696 1.448013 GACCTGCACCGAGGCTAAC 60.448 63.158 0.00 0.00 36.46 2.34
1588 1701 1.680651 AGAGAGACCTGCACCGAGG 60.681 63.158 0.00 0.00 39.28 4.63
1590 1703 3.686760 CAGAGAGACCTGCACCGA 58.313 61.111 0.00 0.00 0.00 4.69
1614 1739 6.403866 AGTTGACATGCTTGACCAAAAATA 57.596 33.333 6.60 0.00 0.00 1.40
1639 1764 1.861982 TTTAGGAACGGAGGAGGGAG 58.138 55.000 0.00 0.00 0.00 4.30
1640 1765 2.563039 ATTTAGGAACGGAGGAGGGA 57.437 50.000 0.00 0.00 0.00 4.20
1641 1766 3.036091 TGTATTTAGGAACGGAGGAGGG 58.964 50.000 0.00 0.00 0.00 4.30
1642 1767 4.161754 ACTTGTATTTAGGAACGGAGGAGG 59.838 45.833 0.00 0.00 0.00 4.30
1643 1768 5.127356 AGACTTGTATTTAGGAACGGAGGAG 59.873 44.000 0.00 0.00 0.00 3.69
1644 1769 5.021458 AGACTTGTATTTAGGAACGGAGGA 58.979 41.667 0.00 0.00 0.00 3.71
1645 1770 5.340439 AGACTTGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
1646 1771 6.402226 GCAAAGACTTGTATTTAGGAACGGAG 60.402 42.308 0.00 0.00 34.79 4.63
1647 1772 5.410439 GCAAAGACTTGTATTTAGGAACGGA 59.590 40.000 0.00 0.00 34.79 4.69
1648 1773 5.180492 TGCAAAGACTTGTATTTAGGAACGG 59.820 40.000 0.00 0.00 34.79 4.44
1649 1774 6.147164 TCTGCAAAGACTTGTATTTAGGAACG 59.853 38.462 0.00 0.00 34.79 3.95
1650 1775 7.387948 TCTCTGCAAAGACTTGTATTTAGGAAC 59.612 37.037 0.00 0.00 34.79 3.62
1651 1776 7.450074 TCTCTGCAAAGACTTGTATTTAGGAA 58.550 34.615 0.00 0.00 34.79 3.36
1652 1777 7.004555 TCTCTGCAAAGACTTGTATTTAGGA 57.995 36.000 0.00 0.00 34.79 2.94
1653 1778 7.768120 AGATCTCTGCAAAGACTTGTATTTAGG 59.232 37.037 0.00 0.00 34.79 2.69
1654 1779 8.715191 AGATCTCTGCAAAGACTTGTATTTAG 57.285 34.615 0.00 0.00 34.79 1.85
1655 1780 8.314021 TGAGATCTCTGCAAAGACTTGTATTTA 58.686 33.333 22.95 0.00 34.79 1.40
1656 1781 7.118971 GTGAGATCTCTGCAAAGACTTGTATTT 59.881 37.037 22.95 0.00 34.79 1.40
1657 1782 6.593382 GTGAGATCTCTGCAAAGACTTGTATT 59.407 38.462 22.95 0.00 34.79 1.89
1658 1783 6.070881 AGTGAGATCTCTGCAAAGACTTGTAT 60.071 38.462 22.95 0.00 34.79 2.29
1659 1784 5.244851 AGTGAGATCTCTGCAAAGACTTGTA 59.755 40.000 22.95 0.00 34.79 2.41
1660 1785 4.040217 AGTGAGATCTCTGCAAAGACTTGT 59.960 41.667 22.95 0.00 34.79 3.16
1661 1786 4.567971 AGTGAGATCTCTGCAAAGACTTG 58.432 43.478 22.95 0.00 35.49 3.16
1662 1787 4.888326 AGTGAGATCTCTGCAAAGACTT 57.112 40.909 22.95 0.06 0.00 3.01
1663 1788 5.655974 TCATAGTGAGATCTCTGCAAAGACT 59.344 40.000 22.95 17.16 0.00 3.24
1664 1789 5.900425 TCATAGTGAGATCTCTGCAAAGAC 58.100 41.667 22.95 11.09 0.00 3.01
1665 1790 6.336566 GTTCATAGTGAGATCTCTGCAAAGA 58.663 40.000 22.95 11.24 0.00 2.52
1666 1791 5.523188 GGTTCATAGTGAGATCTCTGCAAAG 59.477 44.000 22.95 9.27 0.00 2.77
1667 1792 5.046376 TGGTTCATAGTGAGATCTCTGCAAA 60.046 40.000 22.95 7.77 0.00 3.68
1668 1793 4.467438 TGGTTCATAGTGAGATCTCTGCAA 59.533 41.667 22.95 7.12 0.00 4.08
1669 1794 4.026052 TGGTTCATAGTGAGATCTCTGCA 58.974 43.478 22.95 8.50 0.00 4.41
1670 1795 4.142071 TGTGGTTCATAGTGAGATCTCTGC 60.142 45.833 22.95 15.34 0.00 4.26
1671 1796 5.588958 TGTGGTTCATAGTGAGATCTCTG 57.411 43.478 22.95 13.04 0.00 3.35
1672 1797 6.016693 CGTATGTGGTTCATAGTGAGATCTCT 60.017 42.308 22.95 6.99 39.36 3.10
1673 1798 6.146216 CGTATGTGGTTCATAGTGAGATCTC 58.854 44.000 16.21 16.21 39.36 2.75
1674 1799 5.010112 CCGTATGTGGTTCATAGTGAGATCT 59.990 44.000 0.00 0.00 39.36 2.75
1675 1800 5.009710 TCCGTATGTGGTTCATAGTGAGATC 59.990 44.000 0.00 0.00 39.36 2.75
1676 1801 4.893524 TCCGTATGTGGTTCATAGTGAGAT 59.106 41.667 0.00 0.00 39.36 2.75
1677 1802 4.097437 GTCCGTATGTGGTTCATAGTGAGA 59.903 45.833 0.00 0.00 39.36 3.27
1678 1803 4.360563 GTCCGTATGTGGTTCATAGTGAG 58.639 47.826 0.00 0.00 39.36 3.51
1679 1804 3.181494 CGTCCGTATGTGGTTCATAGTGA 60.181 47.826 0.00 0.00 39.36 3.41
1680 1805 3.113322 CGTCCGTATGTGGTTCATAGTG 58.887 50.000 0.00 0.00 39.36 2.74
1681 1806 2.756760 ACGTCCGTATGTGGTTCATAGT 59.243 45.455 0.00 0.00 39.36 2.12
1682 1807 3.431922 ACGTCCGTATGTGGTTCATAG 57.568 47.619 0.00 0.00 39.36 2.23
1683 1808 5.530543 TGTATACGTCCGTATGTGGTTCATA 59.469 40.000 19.58 0.00 40.98 2.15
1684 1809 4.338964 TGTATACGTCCGTATGTGGTTCAT 59.661 41.667 19.58 0.00 40.98 2.57
1685 1810 3.693578 TGTATACGTCCGTATGTGGTTCA 59.306 43.478 19.58 8.31 40.98 3.18
1686 1811 4.035558 TCTGTATACGTCCGTATGTGGTTC 59.964 45.833 19.58 6.40 40.98 3.62
1687 1812 3.947196 TCTGTATACGTCCGTATGTGGTT 59.053 43.478 19.58 0.00 40.98 3.67
1688 1813 3.544684 TCTGTATACGTCCGTATGTGGT 58.455 45.455 19.58 0.00 40.98 4.16
1689 1814 4.473199 CATCTGTATACGTCCGTATGTGG 58.527 47.826 19.58 10.48 40.98 4.17
1690 1815 3.912563 GCATCTGTATACGTCCGTATGTG 59.087 47.826 19.58 12.01 40.98 3.21
1691 1816 3.566742 TGCATCTGTATACGTCCGTATGT 59.433 43.478 19.58 1.03 40.98 2.29
1692 1817 4.155310 TGCATCTGTATACGTCCGTATG 57.845 45.455 19.58 7.85 40.98 2.39
1693 1818 5.386958 AATGCATCTGTATACGTCCGTAT 57.613 39.130 15.73 15.73 43.04 3.06
1694 1819 4.841443 AATGCATCTGTATACGTCCGTA 57.159 40.909 0.00 1.60 34.87 4.02
1695 1820 3.728076 AATGCATCTGTATACGTCCGT 57.272 42.857 0.00 0.00 0.00 4.69
1696 1821 5.918576 TCTAAAATGCATCTGTATACGTCCG 59.081 40.000 0.00 0.00 0.00 4.79
1697 1822 6.924060 ACTCTAAAATGCATCTGTATACGTCC 59.076 38.462 0.00 0.00 0.00 4.79
1698 1823 7.435488 ACACTCTAAAATGCATCTGTATACGTC 59.565 37.037 0.00 0.00 0.00 4.34
1699 1824 7.265673 ACACTCTAAAATGCATCTGTATACGT 58.734 34.615 0.00 0.00 0.00 3.57
1700 1825 7.700322 ACACTCTAAAATGCATCTGTATACG 57.300 36.000 0.00 0.00 0.00 3.06
1701 1826 9.967346 TCTACACTCTAAAATGCATCTGTATAC 57.033 33.333 0.00 0.00 0.00 1.47
1704 1829 9.534565 GAATCTACACTCTAAAATGCATCTGTA 57.465 33.333 0.00 0.00 0.00 2.74
1705 1830 8.043113 TGAATCTACACTCTAAAATGCATCTGT 58.957 33.333 0.00 0.00 0.00 3.41
1706 1831 8.333908 GTGAATCTACACTCTAAAATGCATCTG 58.666 37.037 0.00 0.00 37.73 2.90
1707 1832 8.263640 AGTGAATCTACACTCTAAAATGCATCT 58.736 33.333 0.00 0.00 46.36 2.90
1708 1833 8.430801 AGTGAATCTACACTCTAAAATGCATC 57.569 34.615 0.00 0.00 46.36 3.91
1721 1846 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1722 1847 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1723 1848 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1724 1849 4.631377 CACGGAGCAAAATGAGTGAATCTA 59.369 41.667 0.00 0.00 0.00 1.98
1725 1850 3.438087 CACGGAGCAAAATGAGTGAATCT 59.562 43.478 0.00 0.00 0.00 2.40
1726 1851 3.189287 ACACGGAGCAAAATGAGTGAATC 59.811 43.478 0.19 0.00 34.16 2.52
1727 1852 3.058016 CACACGGAGCAAAATGAGTGAAT 60.058 43.478 0.19 0.00 34.16 2.57
1728 1853 2.290367 CACACGGAGCAAAATGAGTGAA 59.710 45.455 0.19 0.00 34.16 3.18
1729 1854 1.872952 CACACGGAGCAAAATGAGTGA 59.127 47.619 0.19 0.00 34.16 3.41
1730 1855 1.603802 ACACACGGAGCAAAATGAGTG 59.396 47.619 0.00 0.00 35.89 3.51
1731 1856 1.967319 ACACACGGAGCAAAATGAGT 58.033 45.000 0.00 0.00 0.00 3.41
1732 1857 3.067106 ACTACACACGGAGCAAAATGAG 58.933 45.455 0.00 0.00 0.00 2.90
1733 1858 3.120321 ACTACACACGGAGCAAAATGA 57.880 42.857 0.00 0.00 0.00 2.57
1734 1859 3.249799 TGAACTACACACGGAGCAAAATG 59.750 43.478 0.00 0.00 0.00 2.32
1735 1860 3.472652 TGAACTACACACGGAGCAAAAT 58.527 40.909 0.00 0.00 0.00 1.82
1736 1861 2.907634 TGAACTACACACGGAGCAAAA 58.092 42.857 0.00 0.00 0.00 2.44
1737 1862 2.605837 TGAACTACACACGGAGCAAA 57.394 45.000 0.00 0.00 0.00 3.68
1738 1863 2.831685 ATGAACTACACACGGAGCAA 57.168 45.000 0.00 0.00 0.00 3.91
1739 1864 2.823747 ACTATGAACTACACACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
1740 1865 3.179830 CACTATGAACTACACACGGAGC 58.820 50.000 0.00 0.00 0.00 4.70
1741 1866 3.442625 TCCACTATGAACTACACACGGAG 59.557 47.826 0.00 0.00 0.00 4.63
1742 1867 3.423749 TCCACTATGAACTACACACGGA 58.576 45.455 0.00 0.00 0.00 4.69
1743 1868 3.861276 TCCACTATGAACTACACACGG 57.139 47.619 0.00 0.00 0.00 4.94
1744 1869 5.651530 AGATTCCACTATGAACTACACACG 58.348 41.667 0.00 0.00 0.00 4.49
1745 1870 6.868622 AGAGATTCCACTATGAACTACACAC 58.131 40.000 0.00 0.00 0.00 3.82
1746 1871 7.614192 TGTAGAGATTCCACTATGAACTACACA 59.386 37.037 0.00 0.00 31.66 3.72
1747 1872 7.997482 TGTAGAGATTCCACTATGAACTACAC 58.003 38.462 0.00 0.00 31.66 2.90
1748 1873 8.589701 TTGTAGAGATTCCACTATGAACTACA 57.410 34.615 0.00 0.00 33.29 2.74
1749 1874 9.871238 TTTTGTAGAGATTCCACTATGAACTAC 57.129 33.333 0.00 0.00 0.00 2.73
1751 1876 8.816894 TCTTTTGTAGAGATTCCACTATGAACT 58.183 33.333 0.00 0.00 0.00 3.01
1752 1877 8.874816 GTCTTTTGTAGAGATTCCACTATGAAC 58.125 37.037 0.00 0.00 32.23 3.18
1753 1878 8.816894 AGTCTTTTGTAGAGATTCCACTATGAA 58.183 33.333 0.00 0.00 32.23 2.57
1754 1879 8.367660 AGTCTTTTGTAGAGATTCCACTATGA 57.632 34.615 0.00 0.00 32.23 2.15
1755 1880 8.877779 CAAGTCTTTTGTAGAGATTCCACTATG 58.122 37.037 0.00 0.00 32.23 2.23
1756 1881 8.598041 ACAAGTCTTTTGTAGAGATTCCACTAT 58.402 33.333 0.00 0.00 32.23 2.12
1757 1882 7.963532 ACAAGTCTTTTGTAGAGATTCCACTA 58.036 34.615 0.00 0.00 32.23 2.74
1758 1883 6.831976 ACAAGTCTTTTGTAGAGATTCCACT 58.168 36.000 0.00 0.00 32.23 4.00
1759 1884 8.779354 ATACAAGTCTTTTGTAGAGATTCCAC 57.221 34.615 6.02 0.00 38.17 4.02
1760 1885 9.793259 AAATACAAGTCTTTTGTAGAGATTCCA 57.207 29.630 6.02 0.00 38.17 3.53
1767 1892 9.199982 CGTTCCTAAATACAAGTCTTTTGTAGA 57.800 33.333 6.02 0.00 38.17 2.59
1768 1893 8.440833 CCGTTCCTAAATACAAGTCTTTTGTAG 58.559 37.037 6.02 0.00 38.17 2.74
1769 1894 8.149647 TCCGTTCCTAAATACAAGTCTTTTGTA 58.850 33.333 2.61 2.61 38.99 2.41
1770 1895 6.993902 TCCGTTCCTAAATACAAGTCTTTTGT 59.006 34.615 0.00 0.00 36.49 2.83
1771 1896 7.429636 TCCGTTCCTAAATACAAGTCTTTTG 57.570 36.000 0.00 0.00 0.00 2.44
1772 1897 6.148976 GCTCCGTTCCTAAATACAAGTCTTTT 59.851 38.462 0.00 0.00 0.00 2.27
1773 1898 5.642491 GCTCCGTTCCTAAATACAAGTCTTT 59.358 40.000 0.00 0.00 0.00 2.52
1774 1899 5.176592 GCTCCGTTCCTAAATACAAGTCTT 58.823 41.667 0.00 0.00 0.00 3.01
1775 1900 4.677250 CGCTCCGTTCCTAAATACAAGTCT 60.677 45.833 0.00 0.00 0.00 3.24
1776 1901 3.550678 CGCTCCGTTCCTAAATACAAGTC 59.449 47.826 0.00 0.00 0.00 3.01
1777 1902 3.194116 TCGCTCCGTTCCTAAATACAAGT 59.806 43.478 0.00 0.00 0.00 3.16
1778 1903 3.777478 TCGCTCCGTTCCTAAATACAAG 58.223 45.455 0.00 0.00 0.00 3.16
1779 1904 3.194116 ACTCGCTCCGTTCCTAAATACAA 59.806 43.478 0.00 0.00 0.00 2.41
1780 1905 2.756760 ACTCGCTCCGTTCCTAAATACA 59.243 45.455 0.00 0.00 0.00 2.29
1781 1906 3.433513 ACTCGCTCCGTTCCTAAATAC 57.566 47.619 0.00 0.00 0.00 1.89
1782 1907 3.002656 CGTACTCGCTCCGTTCCTAAATA 59.997 47.826 0.00 0.00 0.00 1.40
1783 1908 2.223433 CGTACTCGCTCCGTTCCTAAAT 60.223 50.000 0.00 0.00 0.00 1.40
1784 1909 1.131126 CGTACTCGCTCCGTTCCTAAA 59.869 52.381 0.00 0.00 0.00 1.85
1785 1910 0.729116 CGTACTCGCTCCGTTCCTAA 59.271 55.000 0.00 0.00 0.00 2.69
1786 1911 0.108186 TCGTACTCGCTCCGTTCCTA 60.108 55.000 0.00 0.00 36.96 2.94
1787 1912 0.957395 TTCGTACTCGCTCCGTTCCT 60.957 55.000 0.00 0.00 36.96 3.36
1788 1913 0.109597 TTTCGTACTCGCTCCGTTCC 60.110 55.000 0.00 0.00 36.96 3.62
1789 1914 1.582502 CATTTCGTACTCGCTCCGTTC 59.417 52.381 0.00 0.00 36.96 3.95
1790 1915 1.068055 ACATTTCGTACTCGCTCCGTT 60.068 47.619 0.00 0.00 36.96 4.44
1791 1916 0.524862 ACATTTCGTACTCGCTCCGT 59.475 50.000 0.00 0.00 36.96 4.69
1792 1917 2.373269 CTACATTTCGTACTCGCTCCG 58.627 52.381 0.00 0.00 36.96 4.63
1793 1918 2.357009 TCCTACATTTCGTACTCGCTCC 59.643 50.000 0.00 0.00 36.96 4.70
1794 1919 3.065095 ACTCCTACATTTCGTACTCGCTC 59.935 47.826 0.00 0.00 36.96 5.03
1795 1920 3.015327 ACTCCTACATTTCGTACTCGCT 58.985 45.455 0.00 0.00 36.96 4.93
1796 1921 3.417690 ACTCCTACATTTCGTACTCGC 57.582 47.619 0.00 0.00 36.96 5.03
1797 1922 5.475273 TGTACTCCTACATTTCGTACTCG 57.525 43.478 0.00 0.00 33.47 4.18
1842 1967 1.062294 GCGGTCTGTAGTCTGTACGAG 59.938 57.143 0.00 0.00 0.00 4.18
1872 1997 1.007336 AACGCTAAGCAAGTCGACCG 61.007 55.000 13.01 8.48 0.00 4.79
1874 1999 1.415374 TCAACGCTAAGCAAGTCGAC 58.585 50.000 7.70 7.70 0.00 4.20
1924 2049 6.582295 ACTTGTAAACGAAATGATGATGTTGC 59.418 34.615 0.00 0.00 0.00 4.17
1927 2052 7.648142 ACAACTTGTAAACGAAATGATGATGT 58.352 30.769 0.00 0.00 0.00 3.06
1944 2069 0.462403 ACACGGCGGTTACAACTTGT 60.462 50.000 13.24 0.00 0.00 3.16
1945 2070 0.041663 CACACGGCGGTTACAACTTG 60.042 55.000 13.24 0.00 0.00 3.16
1965 2090 3.272439 ACATTTGATCAGCAACACACG 57.728 42.857 0.00 0.00 35.91 4.49
1966 2091 3.737266 CCAACATTTGATCAGCAACACAC 59.263 43.478 0.00 0.00 35.91 3.82
1967 2092 3.799574 GCCAACATTTGATCAGCAACACA 60.800 43.478 0.00 0.00 35.91 3.72
1968 2093 2.733026 GCCAACATTTGATCAGCAACAC 59.267 45.455 0.00 0.00 35.91 3.32
1969 2094 2.629137 AGCCAACATTTGATCAGCAACA 59.371 40.909 0.00 0.00 35.91 3.33
1970 2095 3.308438 AGCCAACATTTGATCAGCAAC 57.692 42.857 0.00 0.00 35.91 4.17
1971 2096 4.081406 ACTAGCCAACATTTGATCAGCAA 58.919 39.130 0.00 0.00 33.88 3.91
1972 2097 3.441222 CACTAGCCAACATTTGATCAGCA 59.559 43.478 0.00 0.00 0.00 4.41
1973 2098 3.691118 TCACTAGCCAACATTTGATCAGC 59.309 43.478 0.00 0.00 0.00 4.26
1974 2099 4.095483 GGTCACTAGCCAACATTTGATCAG 59.905 45.833 0.00 0.00 0.00 2.90
1975 2100 4.009675 GGTCACTAGCCAACATTTGATCA 58.990 43.478 0.00 0.00 0.00 2.92
1976 2101 3.063997 CGGTCACTAGCCAACATTTGATC 59.936 47.826 0.00 0.00 0.00 2.92
1977 2102 3.009723 CGGTCACTAGCCAACATTTGAT 58.990 45.455 0.00 0.00 0.00 2.57
1978 2103 2.224426 ACGGTCACTAGCCAACATTTGA 60.224 45.455 0.00 0.00 0.00 2.69
1979 2104 2.151202 ACGGTCACTAGCCAACATTTG 58.849 47.619 0.00 0.00 0.00 2.32
1980 2105 2.038557 AGACGGTCACTAGCCAACATTT 59.961 45.455 11.27 0.00 0.00 2.32
2039 2164 4.777463 TCCCTAGCAATAAACTTGTAGCC 58.223 43.478 0.00 0.00 0.00 3.93
2093 2218 9.342308 TGAATTTTAATTCCGCTCTTCTATCAT 57.658 29.630 11.54 0.00 43.19 2.45
2094 2219 8.731275 TGAATTTTAATTCCGCTCTTCTATCA 57.269 30.769 11.54 0.00 43.19 2.15
2098 2223 7.260603 CCAATGAATTTTAATTCCGCTCTTCT 58.739 34.615 11.54 0.00 43.19 2.85
2166 2291 3.181410 ACCCCATATCAGATCCCGTTAGA 60.181 47.826 0.00 0.00 0.00 2.10
2253 2378 6.205853 TGTTGGACAACTTGATGTACCAATAC 59.794 38.462 15.37 0.00 39.91 1.89
2274 2399 6.558771 TTTGGACTAGTGATGAACATGTTG 57.441 37.500 17.58 0.97 0.00 3.33
2279 2404 5.680619 ACTGTTTTGGACTAGTGATGAACA 58.319 37.500 0.00 5.78 0.00 3.18
2386 2512 4.060038 ACCTTCCACATGATCGTCATAC 57.940 45.455 0.00 0.00 34.28 2.39
2469 2595 2.590092 CGGTTTAGCCCCTCCTGG 59.410 66.667 0.00 0.00 0.00 4.45
2470 2596 2.124695 GCGGTTTAGCCCCTCCTG 60.125 66.667 0.00 0.00 0.00 3.86
2471 2597 3.782443 CGCGGTTTAGCCCCTCCT 61.782 66.667 0.00 0.00 0.00 3.69
2477 2603 4.454717 CCAACGCGCGGTTTAGCC 62.455 66.667 35.22 0.00 36.49 3.93
2515 2641 1.722636 TTTTAAAACGTGGGCGCCGT 61.723 50.000 22.54 12.88 42.83 5.68
2714 2856 1.246056 ACACGCGGTTCTACAGCCTA 61.246 55.000 12.47 0.00 35.89 3.93
2829 3013 3.473166 CGACGACGACGAGGACGA 61.473 66.667 15.32 0.00 41.06 4.20
2892 3079 1.413662 CCTGGAGGAGATAGAAGCCCA 60.414 57.143 0.00 0.00 37.39 5.36
3066 3738 3.838271 GTGGAGGATCAGCGCCGA 61.838 66.667 2.29 0.00 36.25 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.