Multiple sequence alignment - TraesCS2D01G055800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G055800 chr2D 100.000 5913 0 0 1 5913 22385040 22390952 0.000000e+00 10920.0
1 TraesCS2D01G055800 chr2D 100.000 2800 0 0 6216 9015 22391255 22394054 0.000000e+00 5171.0
2 TraesCS2D01G055800 chr2D 84.942 2072 264 33 1050 3088 22469994 22472050 0.000000e+00 2054.0
3 TraesCS2D01G055800 chr2D 81.654 1499 212 34 4298 5774 22475643 22477100 0.000000e+00 1186.0
4 TraesCS2D01G055800 chr2D 81.863 805 102 26 6384 7183 22478396 22479161 9.870000e-179 638.0
5 TraesCS2D01G055800 chr2D 87.651 332 41 0 3362 3693 22474468 22474799 3.950000e-103 387.0
6 TraesCS2D01G055800 chr2D 86.435 317 36 5 7530 7842 22479536 22479849 3.120000e-89 340.0
7 TraesCS2D01G055800 chr2D 88.024 167 17 3 3792 3956 22475218 22475383 2.570000e-45 195.0
8 TraesCS2D01G055800 chr2D 85.065 154 20 2 7251 7404 22479177 22479327 4.360000e-33 154.0
9 TraesCS2D01G055800 chr2D 85.294 102 15 0 3841 3942 22202348 22202247 1.240000e-18 106.0
10 TraesCS2D01G055800 chrUn 94.363 2945 126 16 859 3772 16898608 16901543 0.000000e+00 4482.0
11 TraesCS2D01G055800 chrUn 95.147 1834 78 10 3815 5644 16901747 16903573 0.000000e+00 2883.0
12 TraesCS2D01G055800 chrUn 81.147 1814 250 51 1010 2771 247787272 247785499 0.000000e+00 1371.0
13 TraesCS2D01G055800 chrUn 90.961 874 52 16 6314 7178 16903571 16904426 0.000000e+00 1151.0
14 TraesCS2D01G055800 chrUn 92.143 420 29 4 8598 9015 16906277 16906694 2.800000e-164 590.0
15 TraesCS2D01G055800 chrUn 84.449 508 71 7 5253 5759 247780115 247779615 2.260000e-135 494.0
16 TraesCS2D01G055800 chrUn 90.935 353 29 2 7509 7860 16905022 16905372 1.060000e-128 472.0
17 TraesCS2D01G055800 chrUn 85.519 366 33 8 8215 8564 16905686 16906047 1.850000e-96 364.0
18 TraesCS2D01G055800 chrUn 92.140 229 10 5 7198 7421 16904664 16904889 5.250000e-82 316.0
19 TraesCS2D01G055800 chrUn 78.936 470 70 16 3792 4258 333268490 333268933 8.850000e-75 292.0
20 TraesCS2D01G055800 chrUn 86.538 260 29 4 1 259 16895047 16895301 1.920000e-71 281.0
21 TraesCS2D01G055800 chrUn 79.609 358 59 7 3792 4148 247782241 247781897 2.510000e-60 244.0
22 TraesCS2D01G055800 chrUn 79.580 333 40 11 3362 3693 247782981 247782676 7.090000e-51 213.0
23 TraesCS2D01G055800 chrUn 79.580 333 40 11 3362 3693 333267750 333268055 7.090000e-51 213.0
24 TraesCS2D01G055800 chrUn 78.750 320 48 10 4877 5184 247781479 247781168 7.140000e-46 196.0
25 TraesCS2D01G055800 chrUn 78.750 320 48 10 4877 5184 333269594 333269905 7.140000e-46 196.0
26 TraesCS2D01G055800 chrUn 93.333 120 6 2 8044 8162 16905563 16905681 9.300000e-40 176.0
27 TraesCS2D01G055800 chrUn 90.826 109 10 0 7898 8006 16905458 16905566 7.290000e-31 147.0
28 TraesCS2D01G055800 chrUn 83.168 101 17 0 3841 3941 277926076 277926176 9.640000e-15 93.5
29 TraesCS2D01G055800 chr2A 94.001 2267 111 9 837 3102 24109636 24111878 0.000000e+00 3410.0
30 TraesCS2D01G055800 chr2A 93.369 1855 91 12 3777 5628 24112916 24114741 0.000000e+00 2715.0
31 TraesCS2D01G055800 chr2A 84.488 2108 281 32 1010 3091 24145032 24142945 0.000000e+00 2039.0
32 TraesCS2D01G055800 chr2A 91.687 1215 59 18 6314 7507 24114762 24115955 0.000000e+00 1646.0
33 TraesCS2D01G055800 chr2A 82.195 1494 212 20 4298 5775 24139944 24138489 0.000000e+00 1236.0
34 TraesCS2D01G055800 chr2A 83.275 861 105 29 6336 7183 24137534 24136700 0.000000e+00 756.0
35 TraesCS2D01G055800 chr2A 90.685 569 34 9 3212 3765 24112292 24112856 0.000000e+00 739.0
36 TraesCS2D01G055800 chr2A 95.224 335 10 3 7885 8213 24116543 24116877 8.020000e-145 525.0
37 TraesCS2D01G055800 chr2A 91.489 329 28 0 7557 7885 24116178 24116506 3.840000e-123 453.0
38 TraesCS2D01G055800 chr2A 87.240 337 37 3 7510 7842 24136374 24136040 6.610000e-101 379.0
39 TraesCS2D01G055800 chr2A 86.405 331 45 0 3364 3694 24141151 24140821 6.650000e-96 363.0
40 TraesCS2D01G055800 chr2A 85.196 331 38 6 323 647 24107019 24107344 6.750000e-86 329.0
41 TraesCS2D01G055800 chr2A 92.222 180 13 1 8837 9015 24116959 24117138 4.180000e-63 254.0
42 TraesCS2D01G055800 chr2A 77.670 412 68 16 3792 4196 24140383 24139989 7.040000e-56 230.0
43 TraesCS2D01G055800 chr2A 85.535 159 15 4 7251 7404 24136684 24136529 9.370000e-35 159.0
44 TraesCS2D01G055800 chr2A 94.624 93 5 0 8574 8666 24116872 24116964 2.620000e-30 145.0
45 TraesCS2D01G055800 chr2B 85.294 102 15 0 3841 3942 35392255 35392154 1.240000e-18 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G055800 chr2D 22385040 22394054 9014 False 8045.500000 10920 100.000000 1 9015 2 chr2D.!!$F1 9014
1 TraesCS2D01G055800 chr2D 22469994 22479849 9855 False 707.714286 2054 85.090571 1050 7842 7 chr2D.!!$F2 6792
2 TraesCS2D01G055800 chrUn 16895047 16906694 11647 False 1086.200000 4482 91.190500 1 9015 10 chrUn.!!$F2 9014
3 TraesCS2D01G055800 chrUn 247779615 247787272 7657 True 503.600000 1371 80.707000 1010 5759 5 chrUn.!!$R1 4749
4 TraesCS2D01G055800 chrUn 333267750 333269905 2155 False 233.666667 292 79.088667 3362 5184 3 chrUn.!!$F3 1822
5 TraesCS2D01G055800 chr2A 24107019 24117138 10119 False 1135.111111 3410 92.055222 323 9015 9 chr2A.!!$F1 8692
6 TraesCS2D01G055800 chr2A 24136040 24145032 8992 True 737.428571 2039 83.829714 1010 7842 7 chr2A.!!$R1 6832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
897 4909 0.035739 ATTTGACTGTAACCGCCCGT 59.964 50.000 0.00 0.00 0.00 5.28 F
1256 5277 0.458260 CCGTCACGGTCCATCACATA 59.542 55.000 8.54 0.00 42.73 2.29 F
2408 6493 0.668401 GCCAACAAGCTCAACATGGC 60.668 55.000 11.57 11.57 45.54 4.40 F
2982 7339 0.327000 AGATGGAGGTGAGGAAGGGG 60.327 60.000 0.00 0.00 0.00 4.79 F
3675 10440 0.676184 TCGATGCTCATACTGGCTCC 59.324 55.000 0.00 0.00 0.00 4.70 F
4395 11692 0.892358 CACTTGTGGCTGCTCACCAT 60.892 55.000 15.42 2.53 39.95 3.55 F
4660 11957 1.272147 GGTGGGGAGTTCTGCTCATTT 60.272 52.381 0.00 0.00 45.88 2.32 F
5784 14195 2.037902 TGGAAGGTATGTGAAGACGCAA 59.962 45.455 0.00 0.00 39.99 4.85 F
6608 16379 0.038166 CTGAGGCAACAGGGGCTTTA 59.962 55.000 4.23 0.00 44.62 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2469 6554 1.060937 GATCACGCGCATGTGGTTC 59.939 57.895 5.73 5.95 40.31 3.62 R
2956 7313 1.480312 CCTCACCTCCATCTCGATCCT 60.480 57.143 0.00 0.00 0.00 3.24 R
3536 10301 0.173708 ACGCTCTCCGATTTCAGTCC 59.826 55.000 0.00 0.00 41.02 3.85 R
4917 12320 0.682292 GGCTTAGGATCCTTCCCGAG 59.318 60.000 22.03 11.34 43.76 4.63 R
5656 14064 1.283613 TGGAACACGAGGGCCATAAAT 59.716 47.619 6.18 0.00 0.00 1.40 R
6321 15660 0.586319 TTGCTAGCAGTTGCACGAAC 59.414 50.000 18.45 0.00 45.16 3.95 R
6366 16135 0.676151 CAGAGCCAGGCCAGAAAGTC 60.676 60.000 8.22 0.00 0.00 3.01 R
7595 17865 0.398318 AGTTCTCACCCAAGTCAGCC 59.602 55.000 0.00 0.00 0.00 4.85 R
8212 18543 0.323360 ACCTGTGGTGCACAAACTGT 60.323 50.000 20.43 13.83 44.08 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 8.983724 ACATGTATTTGAAAATTGTTTAACCCG 58.016 29.630 0.00 0.00 0.00 5.28
91 92 9.765795 ATTTGAAAATTGTTTAACCCGTATTCA 57.234 25.926 0.00 0.00 0.00 2.57
163 164 5.238650 CAGAAACTAAGTTTTGGATCCACGT 59.761 40.000 15.91 4.10 35.77 4.49
165 166 4.345859 ACTAAGTTTTGGATCCACGTCA 57.654 40.909 15.91 0.00 0.00 4.35
175 176 0.958822 ATCCACGTCAAAAACAGCCC 59.041 50.000 0.00 0.00 0.00 5.19
185 187 3.052036 CAAAAACAGCCCGATTTGACTG 58.948 45.455 0.00 0.00 35.34 3.51
195 197 2.458592 GATTTGACTGGGAAATCGCG 57.541 50.000 0.00 0.00 31.85 5.87
204 206 1.227853 GGAAATCGCGTAGGGGCAT 60.228 57.895 5.77 0.00 42.39 4.40
213 215 3.311110 TAGGGGCATCGGATCCGC 61.311 66.667 29.62 15.36 39.59 5.54
238 240 0.805614 AGACGGCCGATATCTGATCG 59.194 55.000 35.90 0.00 40.86 3.69
284 286 3.851128 GCCGGGGTAGCCAGAGTC 61.851 72.222 14.06 0.00 0.00 3.36
285 287 3.155167 CCGGGGTAGCCAGAGTCC 61.155 72.222 14.06 0.00 0.00 3.85
286 288 3.528370 CGGGGTAGCCAGAGTCCG 61.528 72.222 14.06 1.73 0.00 4.79
287 289 3.851128 GGGGTAGCCAGAGTCCGC 61.851 72.222 14.06 0.00 0.00 5.54
288 290 3.075005 GGGTAGCCAGAGTCCGCA 61.075 66.667 5.96 0.00 0.00 5.69
289 291 2.184579 GGTAGCCAGAGTCCGCAC 59.815 66.667 2.90 0.00 0.00 5.34
290 292 2.184579 GTAGCCAGAGTCCGCACC 59.815 66.667 2.90 0.00 0.00 5.01
291 293 3.075005 TAGCCAGAGTCCGCACCC 61.075 66.667 2.90 0.00 0.00 4.61
362 364 3.242518 TGCGTCTCGTAGATTGTTTCAG 58.757 45.455 0.00 0.00 33.89 3.02
363 365 2.599082 GCGTCTCGTAGATTGTTTCAGG 59.401 50.000 0.00 0.00 33.89 3.86
370 372 3.430929 CGTAGATTGTTTCAGGGAGGGAG 60.431 52.174 0.00 0.00 0.00 4.30
391 552 8.619281 AGGGAGATATGAGACATAATGAGTAGA 58.381 37.037 0.00 0.00 0.00 2.59
392 553 9.249053 GGGAGATATGAGACATAATGAGTAGAA 57.751 37.037 0.00 0.00 0.00 2.10
433 594 1.745827 CGTTGGGGATATGAGCGGTTT 60.746 52.381 0.00 0.00 0.00 3.27
434 595 1.676006 GTTGGGGATATGAGCGGTTTG 59.324 52.381 0.00 0.00 0.00 2.93
437 598 1.308998 GGGATATGAGCGGTTTGTGG 58.691 55.000 0.00 0.00 0.00 4.17
440 601 1.670811 GATATGAGCGGTTTGTGGGTG 59.329 52.381 0.00 0.00 0.00 4.61
443 604 3.485346 GAGCGGTTTGTGGGTGGGA 62.485 63.158 0.00 0.00 0.00 4.37
461 622 1.542544 GAACCGTGACCTCGTATTCG 58.457 55.000 0.00 0.00 38.55 3.34
463 624 0.169672 ACCGTGACCTCGTATTCGTG 59.830 55.000 0.00 0.00 38.33 4.35
466 627 1.129998 CGTGACCTCGTATTCGTGTCT 59.870 52.381 14.30 0.00 39.05 3.41
468 629 1.135489 TGACCTCGTATTCGTGTCTGC 60.135 52.381 14.30 0.00 39.05 4.26
469 630 0.179171 ACCTCGTATTCGTGTCTGCG 60.179 55.000 0.00 0.00 38.33 5.18
477 638 0.517755 TTCGTGTCTGCGTCTCTCTC 59.482 55.000 0.00 0.00 0.00 3.20
499 1964 8.984891 TCTCGTACTGGAATAAATAAAAACGA 57.015 30.769 0.00 0.00 34.81 3.85
506 1971 9.287373 ACTGGAATAAATAAAAACGACCTACAA 57.713 29.630 0.00 0.00 0.00 2.41
517 1982 7.812690 AAAACGACCTACAAATCCTAAACTT 57.187 32.000 0.00 0.00 0.00 2.66
531 1996 3.432252 CCTAAACTTCACGTGTAAGCAGG 59.568 47.826 16.51 17.65 36.63 4.85
563 2028 1.133790 GTACGTACCTCATCCGCTTGT 59.866 52.381 15.00 0.00 0.00 3.16
588 2055 6.887626 AAGACTTGGGAAACGCTAAAAATA 57.112 33.333 0.00 0.00 0.00 1.40
590 2057 8.570068 AAGACTTGGGAAACGCTAAAAATATA 57.430 30.769 0.00 0.00 0.00 0.86
623 2090 0.248012 TAGGCGCGAGGATGACAAAA 59.752 50.000 12.10 0.00 0.00 2.44
631 2098 5.022021 CGCGAGGATGACAAAATTAGTTTC 58.978 41.667 0.00 0.00 0.00 2.78
650 2117 2.964343 TGCAAGCATGGCAATCTCA 58.036 47.368 0.00 0.00 46.27 3.27
651 2118 0.528924 TGCAAGCATGGCAATCTCAC 59.471 50.000 0.00 0.00 46.27 3.51
652 2119 0.179119 GCAAGCATGGCAATCTCACC 60.179 55.000 0.00 0.00 32.79 4.02
653 2120 1.179152 CAAGCATGGCAATCTCACCA 58.821 50.000 0.00 0.00 41.06 4.17
656 2123 1.035932 GCATGGCAATCTCACCAGCT 61.036 55.000 0.00 0.00 39.88 4.24
657 2124 0.738975 CATGGCAATCTCACCAGCTG 59.261 55.000 6.78 6.78 39.88 4.24
665 2171 5.506982 GGCAATCTCACCAGCTGAAATTATC 60.507 44.000 17.39 3.23 0.00 1.75
672 2178 4.518211 CACCAGCTGAAATTATCATCCTCC 59.482 45.833 17.39 0.00 37.44 4.30
677 2183 6.205076 CAGCTGAAATTATCATCCTCCTTGAG 59.795 42.308 8.42 0.00 37.44 3.02
689 2195 5.201713 TCCTCCTTGAGCATAACTTATCG 57.798 43.478 0.00 0.00 0.00 2.92
780 2860 8.908786 TTCTGATGTTCAATGGATATTACTCC 57.091 34.615 0.00 0.00 35.74 3.85
800 2880 3.007831 TCCATGTTCCAAAGATTTTGGCC 59.992 43.478 14.26 0.00 39.38 5.36
802 2882 3.749665 TGTTCCAAAGATTTTGGCCTG 57.250 42.857 14.26 0.00 39.38 4.85
804 2884 0.975887 TCCAAAGATTTTGGCCTGCC 59.024 50.000 14.26 0.00 39.38 4.85
805 2885 0.686224 CCAAAGATTTTGGCCTGCCA 59.314 50.000 6.80 6.80 45.63 4.92
819 2899 4.986708 GCCAAGGCCGGGTCCAAA 62.987 66.667 16.60 0.00 34.56 3.28
820 2900 2.989253 CCAAGGCCGGGTCCAAAC 60.989 66.667 2.18 0.00 0.00 2.93
822 2902 1.530655 CAAGGCCGGGTCCAAACTT 60.531 57.895 2.18 0.00 0.00 2.66
826 2906 2.683859 GCCGGGTCCAAACTTACGC 61.684 63.158 2.18 0.00 0.00 4.42
833 2913 0.947180 TCCAAACTTACGCGTCAGCC 60.947 55.000 18.63 0.00 41.18 4.85
834 2914 1.225376 CCAAACTTACGCGTCAGCCA 61.225 55.000 18.63 0.00 41.18 4.75
865 4876 0.714439 GCGCGAGGAAGTAAACAGAC 59.286 55.000 12.10 0.00 0.00 3.51
867 4878 1.986378 CGCGAGGAAGTAAACAGACTG 59.014 52.381 0.00 0.00 0.00 3.51
897 4909 0.035739 ATTTGACTGTAACCGCCCGT 59.964 50.000 0.00 0.00 0.00 5.28
898 4910 0.881159 TTTGACTGTAACCGCCCGTG 60.881 55.000 0.00 0.00 0.00 4.94
899 4911 3.116531 GACTGTAACCGCCCGTGC 61.117 66.667 0.00 0.00 0.00 5.34
961 4973 2.203167 TCCGTCTCTCCGATCCCG 60.203 66.667 0.00 0.00 0.00 5.14
994 5006 4.227134 CACGGAGGATCAGGGCGG 62.227 72.222 0.00 0.00 36.25 6.13
997 5009 2.731571 CGGAGGATCAGGGCGGAAA 61.732 63.158 0.00 0.00 36.25 3.13
1007 5019 1.001393 GGGCGGAAAACATGGGAGA 60.001 57.895 0.00 0.00 0.00 3.71
1023 5041 1.229082 AGAACTCCCGTGGTGGCTA 60.229 57.895 0.00 0.00 35.87 3.93
1024 5042 0.617820 AGAACTCCCGTGGTGGCTAT 60.618 55.000 0.00 0.00 35.87 2.97
1069 5087 2.752238 CGTCGTCAGGCTCCCTCT 60.752 66.667 0.00 0.00 0.00 3.69
1256 5277 0.458260 CCGTCACGGTCCATCACATA 59.542 55.000 8.54 0.00 42.73 2.29
1267 5297 2.436173 TCCATCACATACGGTTATGCCA 59.564 45.455 0.00 0.00 39.07 4.92
1603 5654 2.441164 TCCTCTCGCTGCCTCTCC 60.441 66.667 0.00 0.00 0.00 3.71
1650 5716 3.272334 GCGCGCGATGAAGGGAAT 61.272 61.111 37.18 0.00 0.00 3.01
1667 5733 3.230976 GGAATCAACAGGACCAAAACCT 58.769 45.455 0.00 0.00 38.40 3.50
1736 5811 1.086634 GCGACCTTCAGCTGGATCAC 61.087 60.000 15.13 2.63 0.00 3.06
1758 5833 2.988839 GCTGGTCTCCAAGGGGCAT 61.989 63.158 0.00 0.00 30.80 4.40
1764 5839 1.610086 CTCCAAGGGGCATGCCAAA 60.610 57.895 36.56 14.28 37.98 3.28
1842 5917 3.662623 GACGTACGCTCTGCTCGCA 62.663 63.158 16.72 0.00 0.00 5.10
1992 6073 2.571757 TCGCTCATCGACCGCTTT 59.428 55.556 0.00 0.00 43.16 3.51
2175 6260 3.996124 AAGTCGCTGCGGCTGTCT 61.996 61.111 30.93 12.16 42.48 3.41
2408 6493 0.668401 GCCAACAAGCTCAACATGGC 60.668 55.000 11.57 11.57 45.54 4.40
2808 7165 1.006571 GTTCCTGTCAGACGCCGAA 60.007 57.895 0.00 0.00 0.00 4.30
2982 7339 0.327000 AGATGGAGGTGAGGAAGGGG 60.327 60.000 0.00 0.00 0.00 4.79
3095 7531 8.565416 GCAAGGTGAGTGTAGTACTTTTATTTT 58.435 33.333 0.00 0.00 40.53 1.82
3121 7557 3.446873 TGAACAACACCAGCAAACATTCT 59.553 39.130 0.00 0.00 0.00 2.40
3250 9862 5.130292 ACATTGACATTCCAGAGCTTTTG 57.870 39.130 0.00 0.00 0.00 2.44
3276 9888 4.080299 AGTTTCTAGAATTAGGCCACCCAG 60.080 45.833 5.01 0.00 0.00 4.45
3282 9894 4.026052 AGAATTAGGCCACCCAGAATTTG 58.974 43.478 5.01 0.00 32.29 2.32
3345 10093 4.778534 ACTTTTCTGCCTCATCAACATG 57.221 40.909 0.00 0.00 0.00 3.21
3492 10257 4.718961 AGTACAGGGAAATCATACATGCC 58.281 43.478 0.00 0.00 0.00 4.40
3589 10354 4.389576 GTGGCCAGAAACAGCGCG 62.390 66.667 5.11 0.00 0.00 6.86
3675 10440 0.676184 TCGATGCTCATACTGGCTCC 59.324 55.000 0.00 0.00 0.00 4.70
3683 10448 1.889170 TCATACTGGCTCCGCTATCTG 59.111 52.381 0.00 0.00 0.00 2.90
3698 10463 5.758296 CCGCTATCTGCAAGGTAAATCTTAA 59.242 40.000 0.00 0.00 43.06 1.85
3921 11206 8.356657 CACCAAGTGGATTTCTTACAAAATGTA 58.643 33.333 3.83 0.00 38.94 2.29
3958 11243 4.734398 AGTTCCATTTTTCAACTGCACA 57.266 36.364 0.00 0.00 0.00 4.57
4049 11345 2.612672 CACATTGCAGAGCATCACTAGG 59.387 50.000 0.00 0.00 38.76 3.02
4099 11395 7.644986 AGAGAAAGAACAACTGTATTCTTCG 57.355 36.000 16.07 0.00 42.89 3.79
4118 11414 6.870769 TCTTCGTACCTATGGTTCCTAAAAG 58.129 40.000 0.00 0.00 37.09 2.27
4119 11415 6.664816 TCTTCGTACCTATGGTTCCTAAAAGA 59.335 38.462 0.00 0.00 37.09 2.52
4191 11487 5.116084 ACCTGTCAACATATGCCATACTT 57.884 39.130 1.58 0.00 0.00 2.24
4192 11488 6.247229 ACCTGTCAACATATGCCATACTTA 57.753 37.500 1.58 0.00 0.00 2.24
4395 11692 0.892358 CACTTGTGGCTGCTCACCAT 60.892 55.000 15.42 2.53 39.95 3.55
4660 11957 1.272147 GGTGGGGAGTTCTGCTCATTT 60.272 52.381 0.00 0.00 45.88 2.32
4716 12013 3.187700 GGCAAGTAACTACTGGATGTCG 58.812 50.000 0.00 0.00 36.50 4.35
4917 12320 2.225727 GTCATTTTTCGACACCACTCCC 59.774 50.000 0.00 0.00 33.43 4.30
4957 12360 2.289072 CGGGTATGTCTTATGAGGCCAG 60.289 54.545 5.01 0.00 0.00 4.85
4988 12391 2.823984 TGTTTACCGGCCATGTATACG 58.176 47.619 0.00 0.00 0.00 3.06
5216 13620 6.406288 CCAGACACTACAATGCATCTTAGAGA 60.406 42.308 17.38 0.00 0.00 3.10
5438 13842 5.997129 GGAAAGAGGATGAATTTTGCCAAAA 59.003 36.000 4.87 4.87 34.41 2.44
5611 14015 7.769220 TCAAGAAAGGTATTACTAAGTCTCCG 58.231 38.462 0.00 0.00 0.00 4.63
5613 14021 7.332213 AGAAAGGTATTACTAAGTCTCCGTC 57.668 40.000 0.00 0.00 0.00 4.79
5621 14029 3.752665 ACTAAGTCTCCGTCAACTGAGA 58.247 45.455 0.72 0.72 34.54 3.27
5622 14030 4.337145 ACTAAGTCTCCGTCAACTGAGAT 58.663 43.478 7.42 0.00 38.25 2.75
5625 14033 5.723672 AAGTCTCCGTCAACTGAGATTTA 57.276 39.130 9.50 0.00 38.25 1.40
5656 14064 6.544928 TGCATTTCATAGGACAGAGTAGAA 57.455 37.500 0.00 0.00 0.00 2.10
5664 14072 7.671302 TCATAGGACAGAGTAGAATTTATGGC 58.329 38.462 0.00 0.00 0.00 4.40
5669 14077 4.202264 ACAGAGTAGAATTTATGGCCCTCG 60.202 45.833 0.00 0.00 0.00 4.63
5675 14083 2.052782 ATTTATGGCCCTCGTGTTCC 57.947 50.000 0.00 0.00 0.00 3.62
5684 14092 2.354821 GCCCTCGTGTTCCATATGTTTC 59.645 50.000 1.24 0.00 0.00 2.78
5685 14093 3.873910 CCCTCGTGTTCCATATGTTTCT 58.126 45.455 1.24 0.00 0.00 2.52
5725 14133 7.581476 TCTGTTTTCTTGAATCCGTTATGAAC 58.419 34.615 0.00 0.00 0.00 3.18
5729 14137 8.932791 GTTTTCTTGAATCCGTTATGAACTCTA 58.067 33.333 0.00 0.00 0.00 2.43
5750 14158 9.678260 ACTCTATAGAAAATTGAATCTTGTGCT 57.322 29.630 3.57 0.00 0.00 4.40
5764 14175 5.611796 TCTTGTGCTAACTGTTAAGCATG 57.388 39.130 19.84 15.13 39.57 4.06
5775 14186 4.943705 ACTGTTAAGCATGGAAGGTATGTG 59.056 41.667 0.00 0.00 0.00 3.21
5776 14187 5.172687 TGTTAAGCATGGAAGGTATGTGA 57.827 39.130 0.00 0.00 0.00 3.58
5777 14188 5.565509 TGTTAAGCATGGAAGGTATGTGAA 58.434 37.500 0.00 0.00 0.00 3.18
5778 14189 5.647658 TGTTAAGCATGGAAGGTATGTGAAG 59.352 40.000 0.00 0.00 0.00 3.02
5780 14191 3.878778 AGCATGGAAGGTATGTGAAGAC 58.121 45.455 0.00 0.00 0.00 3.01
5781 14192 2.609459 GCATGGAAGGTATGTGAAGACG 59.391 50.000 0.00 0.00 0.00 4.18
5784 14195 2.037902 TGGAAGGTATGTGAAGACGCAA 59.962 45.455 0.00 0.00 39.99 4.85
5785 14196 3.270877 GGAAGGTATGTGAAGACGCAAT 58.729 45.455 0.00 0.00 39.99 3.56
5786 14197 3.689649 GGAAGGTATGTGAAGACGCAATT 59.310 43.478 0.00 0.00 39.99 2.32
5787 14198 4.873827 GGAAGGTATGTGAAGACGCAATTA 59.126 41.667 0.00 0.00 39.99 1.40
5791 14202 5.351465 AGGTATGTGAAGACGCAATTAGTTG 59.649 40.000 0.00 0.00 39.99 3.16
5793 14204 4.990543 TGTGAAGACGCAATTAGTTGAG 57.009 40.909 1.56 0.82 40.46 3.02
5797 14208 6.480651 TGTGAAGACGCAATTAGTTGAGTAAA 59.519 34.615 7.31 0.00 46.31 2.01
5798 14209 7.010023 GTGAAGACGCAATTAGTTGAGTAAAG 58.990 38.462 7.31 0.00 46.31 1.85
5799 14210 6.926826 TGAAGACGCAATTAGTTGAGTAAAGA 59.073 34.615 7.31 0.00 46.31 2.52
5801 14212 7.118422 AGACGCAATTAGTTGAGTAAAGAAC 57.882 36.000 7.31 0.00 46.31 3.01
5804 14215 7.699566 ACGCAATTAGTTGAGTAAAGAACAAA 58.300 30.769 5.56 0.00 44.85 2.83
5805 14216 8.185505 ACGCAATTAGTTGAGTAAAGAACAAAA 58.814 29.630 5.56 0.00 44.85 2.44
5806 14217 9.180678 CGCAATTAGTTGAGTAAAGAACAAAAT 57.819 29.630 1.56 0.00 37.53 1.82
5813 14224 8.686334 AGTTGAGTAAAGAACAAAATGTCATGT 58.314 29.630 0.00 0.00 0.00 3.21
5823 14234 9.260002 AGAACAAAATGTCATGTTGAATTTACC 57.740 29.630 20.51 3.71 39.73 2.85
5824 14235 8.954950 AACAAAATGTCATGTTGAATTTACCA 57.045 26.923 20.51 0.00 38.29 3.25
5825 14236 9.558396 AACAAAATGTCATGTTGAATTTACCAT 57.442 25.926 20.51 0.00 38.29 3.55
5826 14237 9.558396 ACAAAATGTCATGTTGAATTTACCATT 57.442 25.926 20.51 0.00 0.00 3.16
5828 14239 9.775854 AAAATGTCATGTTGAATTTACCATTCA 57.224 25.926 0.00 0.00 36.37 2.57
5829 14240 9.947433 AAATGTCATGTTGAATTTACCATTCAT 57.053 25.926 0.00 0.00 37.79 2.57
5830 14241 8.936070 ATGTCATGTTGAATTTACCATTCATG 57.064 30.769 0.00 0.00 37.79 3.07
5844 14255 5.179045 CCATTCATGGCTCACTCAATTAC 57.821 43.478 0.00 0.00 41.75 1.89
5848 14259 7.013559 CCATTCATGGCTCACTCAATTACATTA 59.986 37.037 0.00 0.00 41.75 1.90
5850 14261 7.500720 TCATGGCTCACTCAATTACATTATG 57.499 36.000 0.00 0.00 0.00 1.90
5851 14262 7.281841 TCATGGCTCACTCAATTACATTATGA 58.718 34.615 0.00 0.00 0.00 2.15
5852 14263 6.925610 TGGCTCACTCAATTACATTATGAC 57.074 37.500 0.00 0.00 0.00 3.06
5855 14266 8.210265 TGGCTCACTCAATTACATTATGACATA 58.790 33.333 0.00 0.00 0.00 2.29
5857 14268 9.481340 GCTCACTCAATTACATTATGACATAGA 57.519 33.333 0.00 0.00 0.00 1.98
5869 14280 9.073475 ACATTATGACATAGAACTAGAGTCCTC 57.927 37.037 0.00 0.00 0.00 3.71
5870 14281 9.295825 CATTATGACATAGAACTAGAGTCCTCT 57.704 37.037 0.00 1.90 43.40 3.69
5874 14285 9.702253 ATGACATAGAACTAGAGTCCTCTAAAA 57.298 33.333 0.00 0.00 41.22 1.52
5875 14286 9.529823 TGACATAGAACTAGAGTCCTCTAAAAA 57.470 33.333 0.00 0.00 41.22 1.94
5901 14312 5.254901 AGACATAGAACTAGAGTTGTCGGT 58.745 41.667 0.00 0.00 37.23 4.69
5905 14316 4.931661 AGAACTAGAGTTGTCGGTTTCA 57.068 40.909 0.00 0.00 38.56 2.69
6264 14675 6.358118 ACGTCATCAATTGCGTATACAAAT 57.642 33.333 7.00 0.00 36.68 2.32
6265 14676 7.471657 ACGTCATCAATTGCGTATACAAATA 57.528 32.000 7.00 0.00 36.68 1.40
6268 14679 9.381027 CGTCATCAATTGCGTATACAAATAAAT 57.619 29.630 0.00 0.00 32.27 1.40
6312 15651 9.746457 AGAGATAGTAGCACATTCATATCTGTA 57.254 33.333 0.00 0.00 31.79 2.74
6354 16123 2.224042 GCTAGCAACTGGGCAAACTTTT 60.224 45.455 10.63 0.00 35.83 2.27
6366 16135 7.495606 ACTGGGCAAACTTTTCTTAATTTTCTG 59.504 33.333 0.00 0.00 0.00 3.02
6367 16136 7.560368 TGGGCAAACTTTTCTTAATTTTCTGA 58.440 30.769 0.00 0.00 0.00 3.27
6376 16145 8.871686 TTTTCTTAATTTTCTGACTTTCTGGC 57.128 30.769 0.00 0.00 0.00 4.85
6381 16150 0.250901 TTCTGACTTTCTGGCCTGGC 60.251 55.000 11.05 11.05 0.00 4.85
6383 16152 0.676151 CTGACTTTCTGGCCTGGCTC 60.676 60.000 19.68 9.39 0.00 4.70
6384 16153 1.130054 TGACTTTCTGGCCTGGCTCT 61.130 55.000 19.68 0.00 0.00 4.09
6385 16154 0.676151 GACTTTCTGGCCTGGCTCTG 60.676 60.000 19.68 12.39 0.00 3.35
6389 16158 2.174685 TTCTGGCCTGGCTCTGTATA 57.825 50.000 19.68 0.00 0.00 1.47
6390 16159 2.174685 TCTGGCCTGGCTCTGTATAA 57.825 50.000 19.68 0.00 0.00 0.98
6391 16160 2.694397 TCTGGCCTGGCTCTGTATAAT 58.306 47.619 19.68 0.00 0.00 1.28
6394 16163 2.509548 TGGCCTGGCTCTGTATAATTGT 59.490 45.455 19.68 0.00 0.00 2.71
6395 16164 3.053693 TGGCCTGGCTCTGTATAATTGTT 60.054 43.478 19.68 0.00 0.00 2.83
6396 16165 4.165180 TGGCCTGGCTCTGTATAATTGTTA 59.835 41.667 19.68 0.00 0.00 2.41
6499 16270 4.022155 GTCCTACGGTCTTTCTCTCAACTT 60.022 45.833 0.00 0.00 0.00 2.66
6608 16379 0.038166 CTGAGGCAACAGGGGCTTTA 59.962 55.000 4.23 0.00 44.62 1.85
6609 16380 0.480690 TGAGGCAACAGGGGCTTTAA 59.519 50.000 0.00 0.00 44.62 1.52
6620 16391 4.082125 CAGGGGCTTTAACAGATTGTCTT 58.918 43.478 0.00 0.00 0.00 3.01
6680 16451 5.835819 TGACATAAAGGATCTAGAGGTCAGG 59.164 44.000 0.00 0.00 0.00 3.86
6686 16459 4.488770 AGGATCTAGAGGTCAGGAATTCC 58.511 47.826 17.31 17.31 0.00 3.01
6715 16489 7.416964 TTCTTTTGTTGATTCTTCCTTTGGA 57.583 32.000 0.00 0.00 0.00 3.53
6731 16505 6.805713 TCCTTTGGAAAGCTTCTTTTTGTAG 58.194 36.000 0.00 0.00 34.69 2.74
6748 16522 6.651975 TTTGTAGGCTACTATTCTCTAGGC 57.348 41.667 24.07 0.00 36.11 3.93
6749 16523 5.320488 TGTAGGCTACTATTCTCTAGGCA 57.680 43.478 24.07 0.00 37.87 4.75
6752 16526 3.898741 AGGCTACTATTCTCTAGGCAACC 59.101 47.826 0.00 0.00 37.87 3.77
6761 16535 4.650754 TCTCTAGGCAACCGATAGAAAC 57.349 45.455 0.00 0.00 39.76 2.78
6912 16691 1.523758 ACTTTGATCCAGGCGTTGTC 58.476 50.000 0.00 0.00 0.00 3.18
6945 16724 1.372087 CCAGCGAAAGGCCAGATCAC 61.372 60.000 5.01 0.00 45.17 3.06
7112 16897 4.773149 GGCAGGTAACAGGATATAGCTACT 59.227 45.833 0.00 0.00 41.41 2.57
7113 16898 5.336849 GGCAGGTAACAGGATATAGCTACTG 60.337 48.000 0.00 1.13 41.41 2.74
7114 16899 5.244178 GCAGGTAACAGGATATAGCTACTGT 59.756 44.000 8.51 8.51 45.34 3.55
7115 16900 6.682746 CAGGTAACAGGATATAGCTACTGTG 58.317 44.000 13.69 3.00 42.85 3.66
7116 16901 6.265649 CAGGTAACAGGATATAGCTACTGTGT 59.734 42.308 13.69 8.12 42.85 3.72
7117 16902 6.490721 AGGTAACAGGATATAGCTACTGTGTC 59.509 42.308 13.69 10.22 42.85 3.67
7125 16910 2.515926 AGCTACTGTGTCTGTGTGTG 57.484 50.000 0.00 0.00 0.00 3.82
7525 17617 3.880490 TGTTACTTGATGGTTTTCAGCGT 59.120 39.130 0.00 0.00 33.83 5.07
7547 17640 8.478066 AGCGTATCTAGGCATTCATTTCATATA 58.522 33.333 4.88 0.00 39.38 0.86
7548 17641 9.265901 GCGTATCTAGGCATTCATTTCATATAT 57.734 33.333 0.00 0.00 37.08 0.86
7573 17843 5.355910 TCTTCGGTGAAAATAGCCAAATACC 59.644 40.000 0.00 0.00 0.00 2.73
7583 17853 1.826720 AGCCAAATACCTGTTGCATGG 59.173 47.619 0.00 0.00 0.00 3.66
7693 17963 1.386533 GTGCTGTTCATGGATGAGGG 58.613 55.000 0.00 0.00 38.19 4.30
7697 17967 0.994247 TGTTCATGGATGAGGGCACT 59.006 50.000 0.00 0.00 38.19 4.40
7829 18099 3.223661 CAGAGTTCTGGTGCTGGAC 57.776 57.895 1.09 0.00 40.20 4.02
7842 18112 2.283604 TGGACGCAGGTAGGCTGA 60.284 61.111 0.00 0.00 0.00 4.26
7866 18136 3.687698 CCCCTTTTCTGTTACATACACGG 59.312 47.826 0.00 0.00 32.10 4.94
7885 18155 4.441087 CACGGTCGAATCATACTATGTGTG 59.559 45.833 0.00 0.00 0.00 3.82
7887 18157 5.297527 ACGGTCGAATCATACTATGTGTGTA 59.702 40.000 0.00 0.00 0.00 2.90
7889 18159 6.305638 CGGTCGAATCATACTATGTGTGTATG 59.694 42.308 7.36 7.36 44.98 2.39
7890 18160 7.145985 GGTCGAATCATACTATGTGTGTATGT 58.854 38.462 11.88 0.00 44.35 2.29
7891 18161 8.294577 GGTCGAATCATACTATGTGTGTATGTA 58.705 37.037 11.88 2.73 44.35 2.29
7907 18233 6.373216 TGTGTATGTATTTACTGTTTCAGGGC 59.627 38.462 1.90 0.00 35.51 5.19
7930 18256 3.070018 AGTGAAAGAGTTTGATGCTCCG 58.930 45.455 0.00 0.00 33.69 4.63
7943 18269 1.219124 GCTCCGTCCAAGCTGATGA 59.781 57.895 0.00 0.00 36.80 2.92
7965 18291 1.228459 GGCCTTCAGTTTTCGGGGT 60.228 57.895 0.00 0.00 0.00 4.95
8015 18341 1.718757 GCAGGCAACCGATGGATGAC 61.719 60.000 0.00 0.00 33.35 3.06
8032 18362 2.443416 TGACGTGCATGTCTACCTAGT 58.557 47.619 32.97 0.00 39.64 2.57
8210 18541 5.486526 ACATCTCTGAACTTGTCCAATCTC 58.513 41.667 0.00 0.00 0.00 2.75
8211 18542 5.248020 ACATCTCTGAACTTGTCCAATCTCT 59.752 40.000 0.00 0.00 0.00 3.10
8212 18543 6.438741 ACATCTCTGAACTTGTCCAATCTCTA 59.561 38.462 0.00 0.00 0.00 2.43
8213 18544 6.274157 TCTCTGAACTTGTCCAATCTCTAC 57.726 41.667 0.00 0.00 0.00 2.59
8214 18545 5.775195 TCTCTGAACTTGTCCAATCTCTACA 59.225 40.000 0.00 0.00 0.00 2.74
8215 18546 6.030548 TCTGAACTTGTCCAATCTCTACAG 57.969 41.667 0.00 0.00 0.00 2.74
8216 18547 5.540337 TCTGAACTTGTCCAATCTCTACAGT 59.460 40.000 0.00 0.00 0.00 3.55
8217 18548 6.042093 TCTGAACTTGTCCAATCTCTACAGTT 59.958 38.462 0.00 0.00 0.00 3.16
8218 18549 6.591935 TGAACTTGTCCAATCTCTACAGTTT 58.408 36.000 0.00 0.00 0.00 2.66
8219 18550 6.483307 TGAACTTGTCCAATCTCTACAGTTTG 59.517 38.462 0.00 0.00 0.00 2.93
8220 18551 5.930135 ACTTGTCCAATCTCTACAGTTTGT 58.070 37.500 0.00 0.00 30.15 2.83
8221 18552 5.760253 ACTTGTCCAATCTCTACAGTTTGTG 59.240 40.000 0.00 0.00 30.15 3.33
8222 18553 4.065088 TGTCCAATCTCTACAGTTTGTGC 58.935 43.478 0.00 0.00 30.15 4.57
8223 18554 4.065088 GTCCAATCTCTACAGTTTGTGCA 58.935 43.478 0.00 0.00 30.15 4.57
8224 18555 4.065088 TCCAATCTCTACAGTTTGTGCAC 58.935 43.478 10.75 10.75 30.15 4.57
8225 18556 3.189287 CCAATCTCTACAGTTTGTGCACC 59.811 47.826 15.69 0.00 30.15 5.01
8226 18557 3.769739 ATCTCTACAGTTTGTGCACCA 57.230 42.857 15.69 0.00 0.00 4.17
8227 18558 2.833794 TCTCTACAGTTTGTGCACCAC 58.166 47.619 15.69 11.29 34.56 4.16
8228 18559 2.169561 TCTCTACAGTTTGTGCACCACA 59.830 45.455 15.69 0.00 43.02 4.17
8229 18560 2.545526 CTCTACAGTTTGTGCACCACAG 59.454 50.000 15.69 10.50 45.39 3.66
8230 18561 1.603802 CTACAGTTTGTGCACCACAGG 59.396 52.381 15.69 9.87 45.39 4.00
8231 18562 0.323360 ACAGTTTGTGCACCACAGGT 60.323 50.000 15.69 10.47 45.39 4.00
8250 18581 3.197790 CCATGTTCGGCGCTCCAG 61.198 66.667 7.64 0.00 0.00 3.86
8259 18590 0.531532 CGGCGCTCCAGAATCAAGAT 60.532 55.000 7.64 0.00 0.00 2.40
8311 18642 0.526739 AAACGTGTTGCTTTTCCGGC 60.527 50.000 0.00 0.00 0.00 6.13
8332 18663 4.459089 GTGAGGTCTCGGGGCAGC 62.459 72.222 0.00 0.00 0.00 5.25
8333 18664 4.704103 TGAGGTCTCGGGGCAGCT 62.704 66.667 0.00 0.00 0.00 4.24
8336 18667 1.383248 AGGTCTCGGGGCAGCTAAT 60.383 57.895 0.00 0.00 0.00 1.73
8337 18668 1.227674 GGTCTCGGGGCAGCTAATG 60.228 63.158 0.00 0.00 0.00 1.90
8343 18674 2.203209 GGGCAGCTAATGGGACCG 60.203 66.667 0.00 0.00 0.00 4.79
8363 18694 2.486592 CGGTGGCTGTAAGTTTTTAGGG 59.513 50.000 0.00 0.00 35.30 3.53
8366 18697 4.395625 GTGGCTGTAAGTTTTTAGGGAGT 58.604 43.478 0.00 0.00 35.30 3.85
8367 18698 4.825634 GTGGCTGTAAGTTTTTAGGGAGTT 59.174 41.667 0.00 0.00 35.30 3.01
8375 18706 3.641436 AGTTTTTAGGGAGTTTTGGCTGG 59.359 43.478 0.00 0.00 0.00 4.85
8381 18712 1.082104 GAGTTTTGGCTGGCGTTCG 60.082 57.895 0.00 0.00 0.00 3.95
8411 18750 4.270808 GGCTCCAATCTTGTTGTGTTTTTG 59.729 41.667 0.00 0.00 0.00 2.44
8424 18763 3.704061 TGTGTTTTTGGAGAAAAGAGGGG 59.296 43.478 0.00 0.00 32.62 4.79
8476 18815 6.265422 AGAAAACCAGGGTCTTTGATTACAAG 59.735 38.462 0.00 0.00 37.32 3.16
8480 18819 4.636206 CCAGGGTCTTTGATTACAAGCTAC 59.364 45.833 0.00 0.00 37.32 3.58
8481 18820 4.636206 CAGGGTCTTTGATTACAAGCTACC 59.364 45.833 0.00 0.00 37.32 3.18
8482 18821 4.288626 AGGGTCTTTGATTACAAGCTACCA 59.711 41.667 0.00 0.00 36.50 3.25
8483 18822 4.636206 GGGTCTTTGATTACAAGCTACCAG 59.364 45.833 0.00 0.00 36.50 4.00
8485 18824 6.116126 GGTCTTTGATTACAAGCTACCAGAT 58.884 40.000 0.00 0.00 37.32 2.90
8486 18825 6.599638 GGTCTTTGATTACAAGCTACCAGATT 59.400 38.462 0.00 0.00 37.32 2.40
8488 18827 8.604890 GTCTTTGATTACAAGCTACCAGATTAC 58.395 37.037 0.00 0.00 37.32 1.89
8489 18828 7.769044 TCTTTGATTACAAGCTACCAGATTACC 59.231 37.037 0.00 0.00 37.32 2.85
8490 18829 5.597806 TGATTACAAGCTACCAGATTACCG 58.402 41.667 0.00 0.00 0.00 4.02
8491 18830 5.361571 TGATTACAAGCTACCAGATTACCGA 59.638 40.000 0.00 0.00 0.00 4.69
8510 18852 9.694137 ATTACCGATACTAATAGAAAGCAACTC 57.306 33.333 0.00 0.00 0.00 3.01
8515 18857 7.380065 CGATACTAATAGAAAGCAACTCAGGAC 59.620 40.741 0.00 0.00 0.00 3.85
8520 18862 2.038295 AGAAAGCAACTCAGGACTCCAG 59.962 50.000 0.00 0.00 0.00 3.86
8521 18863 1.722034 AAGCAACTCAGGACTCCAGA 58.278 50.000 0.00 0.00 0.00 3.86
8522 18864 0.972883 AGCAACTCAGGACTCCAGAC 59.027 55.000 0.00 0.00 0.00 3.51
8551 18893 4.223144 ACCAGCACAAAATAAGGAACCTT 58.777 39.130 10.97 10.97 39.83 3.50
8561 18903 9.392259 ACAAAATAAGGAACCTTATACAGCTAC 57.608 33.333 21.58 0.00 45.37 3.58
8563 18905 7.685849 AATAAGGAACCTTATACAGCTACCA 57.314 36.000 21.58 0.00 45.37 3.25
8564 18906 5.354842 AAGGAACCTTATACAGCTACCAC 57.645 43.478 4.11 0.00 34.05 4.16
8565 18907 4.621769 AGGAACCTTATACAGCTACCACT 58.378 43.478 0.00 0.00 0.00 4.00
8566 18908 4.650131 AGGAACCTTATACAGCTACCACTC 59.350 45.833 0.00 0.00 0.00 3.51
8567 18909 4.650131 GGAACCTTATACAGCTACCACTCT 59.350 45.833 0.00 0.00 0.00 3.24
8570 18912 4.645588 ACCTTATACAGCTACCACTCTCAC 59.354 45.833 0.00 0.00 0.00 3.51
8571 18913 4.890581 CCTTATACAGCTACCACTCTCACT 59.109 45.833 0.00 0.00 0.00 3.41
8572 18914 5.361285 CCTTATACAGCTACCACTCTCACTT 59.639 44.000 0.00 0.00 0.00 3.16
8573 18915 6.127310 CCTTATACAGCTACCACTCTCACTTT 60.127 42.308 0.00 0.00 0.00 2.66
8574 18916 3.669251 ACAGCTACCACTCTCACTTTC 57.331 47.619 0.00 0.00 0.00 2.62
8575 18917 2.300437 ACAGCTACCACTCTCACTTTCC 59.700 50.000 0.00 0.00 0.00 3.13
8629 19173 4.920640 TCGATTTCTCCAGATAGTCCAC 57.079 45.455 0.00 0.00 0.00 4.02
8649 19193 4.423732 CACAAAATAGCAGCCATACCAAC 58.576 43.478 0.00 0.00 0.00 3.77
8654 19198 0.254178 AGCAGCCATACCAACAGAGG 59.746 55.000 0.00 0.00 0.00 3.69
8673 19217 7.569240 ACAGAGGCTAGATGCTTATAAACTTT 58.431 34.615 0.00 0.00 42.39 2.66
8674 19218 7.713073 ACAGAGGCTAGATGCTTATAAACTTTC 59.287 37.037 0.00 0.00 42.39 2.62
8676 19220 6.817184 AGGCTAGATGCTTATAAACTTTCGA 58.183 36.000 0.00 0.00 42.39 3.71
8709 19253 5.422145 AGCCATGCTCCAAAACAATTATTC 58.578 37.500 0.00 0.00 30.62 1.75
8769 19313 9.729023 CACTGTATCAAACTCTAGATAAGTCTG 57.271 37.037 0.00 0.00 35.87 3.51
8770 19314 8.908903 ACTGTATCAAACTCTAGATAAGTCTGG 58.091 37.037 0.00 0.00 35.87 3.86
8852 19397 1.867363 CCTTGCTACTAGTCCACCCT 58.133 55.000 0.00 0.00 0.00 4.34
8862 19407 3.974642 ACTAGTCCACCCTCTTTTCAACT 59.025 43.478 0.00 0.00 0.00 3.16
8864 19409 2.777692 AGTCCACCCTCTTTTCAACTGA 59.222 45.455 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 7.652909 CCAAAACTTAGTTTCTGAAATGCATGA 59.347 33.333 10.98 0.00 34.43 3.07
130 131 7.652909 TCCAAAACTTAGTTTCTGAAATGCATG 59.347 33.333 10.98 1.88 34.43 4.06
131 132 7.725251 TCCAAAACTTAGTTTCTGAAATGCAT 58.275 30.769 10.98 0.00 34.43 3.96
132 133 7.106439 TCCAAAACTTAGTTTCTGAAATGCA 57.894 32.000 10.98 0.00 34.43 3.96
133 134 7.329471 GGATCCAAAACTTAGTTTCTGAAATGC 59.671 37.037 10.98 9.52 34.43 3.56
134 135 8.359642 TGGATCCAAAACTTAGTTTCTGAAATG 58.640 33.333 13.46 4.60 34.43 2.32
139 140 5.238650 ACGTGGATCCAAAACTTAGTTTCTG 59.761 40.000 18.20 10.82 34.43 3.02
148 149 4.158764 TGTTTTTGACGTGGATCCAAAACT 59.841 37.500 26.33 9.38 41.43 2.66
153 154 1.606668 GCTGTTTTTGACGTGGATCCA 59.393 47.619 11.44 11.44 0.00 3.41
163 164 2.955660 AGTCAAATCGGGCTGTTTTTGA 59.044 40.909 17.29 17.29 36.14 2.69
165 166 2.035832 CCAGTCAAATCGGGCTGTTTTT 59.964 45.455 0.00 0.00 0.00 1.94
185 187 2.590859 GCCCCTACGCGATTTCCC 60.591 66.667 15.93 0.00 0.00 3.97
195 197 2.657237 CGGATCCGATGCCCCTAC 59.343 66.667 30.62 0.00 42.83 3.18
234 236 2.279120 CTGCACGCTCTCCCGATC 60.279 66.667 0.00 0.00 0.00 3.69
267 269 3.851128 GACTCTGGCTACCCCGGC 61.851 72.222 0.00 0.00 40.05 6.13
269 271 3.528370 CGGACTCTGGCTACCCCG 61.528 72.222 0.00 0.00 35.87 5.73
274 276 3.075005 GGGTGCGGACTCTGGCTA 61.075 66.667 7.11 0.00 0.00 3.93
320 322 4.760047 CTTGGGGCGTCTCCGGTG 62.760 72.222 0.00 0.00 34.94 4.94
322 324 3.447025 GATCTTGGGGCGTCTCCGG 62.447 68.421 0.00 0.00 34.94 5.14
323 325 2.107141 GATCTTGGGGCGTCTCCG 59.893 66.667 0.00 0.00 34.94 4.63
324 326 1.144936 CAGATCTTGGGGCGTCTCC 59.855 63.158 0.00 0.00 0.00 3.71
325 327 1.522580 GCAGATCTTGGGGCGTCTC 60.523 63.158 0.00 0.00 0.00 3.36
326 328 2.586792 GCAGATCTTGGGGCGTCT 59.413 61.111 0.00 0.00 0.00 4.18
327 329 2.892425 CGCAGATCTTGGGGCGTC 60.892 66.667 15.00 0.00 44.11 5.19
331 333 1.227089 CGAGACGCAGATCTTGGGG 60.227 63.158 0.00 0.00 43.60 4.96
332 334 0.738975 TACGAGACGCAGATCTTGGG 59.261 55.000 0.00 0.00 44.76 4.12
345 347 3.447586 CCTCCCTGAAACAATCTACGAGA 59.552 47.826 0.00 0.00 0.00 4.04
354 356 4.370776 TCATATCTCCCTCCCTGAAACAA 58.629 43.478 0.00 0.00 0.00 2.83
362 364 5.960811 TCATTATGTCTCATATCTCCCTCCC 59.039 44.000 0.00 0.00 0.00 4.30
363 365 6.667414 ACTCATTATGTCTCATATCTCCCTCC 59.333 42.308 0.00 0.00 0.00 4.30
391 552 2.482494 CCACCACTATCCCCTCTCTTT 58.518 52.381 0.00 0.00 0.00 2.52
392 553 1.972207 GCCACCACTATCCCCTCTCTT 60.972 57.143 0.00 0.00 0.00 2.85
433 594 2.768769 TCACGGTTCCCACCCACA 60.769 61.111 0.00 0.00 40.52 4.17
434 595 2.281276 GTCACGGTTCCCACCCAC 60.281 66.667 0.00 0.00 40.52 4.61
437 598 2.346365 GAGGTCACGGTTCCCACC 59.654 66.667 0.00 0.00 40.16 4.61
440 601 0.533951 AATACGAGGTCACGGTTCCC 59.466 55.000 0.00 0.00 37.61 3.97
443 604 0.883833 ACGAATACGAGGTCACGGTT 59.116 50.000 0.00 0.00 42.66 4.44
448 609 1.135489 GCAGACACGAATACGAGGTCA 60.135 52.381 15.86 0.00 43.51 4.02
454 615 1.181001 GAGACGCAGACACGAATACG 58.819 55.000 0.00 0.00 45.75 3.06
461 622 1.077123 TACGAGAGAGACGCAGACAC 58.923 55.000 0.00 0.00 0.00 3.67
463 624 1.061421 CAGTACGAGAGAGACGCAGAC 59.939 57.143 0.00 0.00 0.00 3.51
466 627 0.036671 TCCAGTACGAGAGAGACGCA 60.037 55.000 0.00 0.00 0.00 5.24
468 629 5.481200 TTTATTCCAGTACGAGAGAGACG 57.519 43.478 0.00 0.00 0.00 4.18
469 630 9.798994 TTTTATTTATTCCAGTACGAGAGAGAC 57.201 33.333 0.00 0.00 0.00 3.36
477 638 7.967178 AGGTCGTTTTTATTTATTCCAGTACG 58.033 34.615 0.00 0.00 0.00 3.67
499 1964 5.699458 CACGTGAAGTTTAGGATTTGTAGGT 59.301 40.000 10.90 0.00 0.00 3.08
506 1971 5.302360 TGCTTACACGTGAAGTTTAGGATT 58.698 37.500 25.01 0.00 0.00 3.01
515 1980 2.223377 GGTTTCCTGCTTACACGTGAAG 59.777 50.000 25.01 20.50 0.00 3.02
517 1982 1.414919 AGGTTTCCTGCTTACACGTGA 59.585 47.619 25.01 2.68 29.57 4.35
546 2011 2.572191 TTACAAGCGGATGAGGTACG 57.428 50.000 0.00 0.00 37.16 3.67
550 2015 3.252974 AGTCTTTACAAGCGGATGAGG 57.747 47.619 0.00 0.00 0.00 3.86
563 2028 6.696441 TTTTTAGCGTTTCCCAAGTCTTTA 57.304 33.333 0.00 0.00 0.00 1.85
572 2039 9.575783 TTTGATGTTATATTTTTAGCGTTTCCC 57.424 29.630 0.00 0.00 0.00 3.97
588 2055 6.326375 TCGCGCCTAAAAATTTTGATGTTAT 58.674 32.000 3.73 0.00 0.00 1.89
590 2057 4.551388 TCGCGCCTAAAAATTTTGATGTT 58.449 34.783 3.73 0.00 0.00 2.71
599 2066 1.940613 GTCATCCTCGCGCCTAAAAAT 59.059 47.619 0.00 0.00 0.00 1.82
604 2071 0.248012 TTTTGTCATCCTCGCGCCTA 59.752 50.000 0.00 0.00 0.00 3.93
609 2076 6.024049 CAGAAACTAATTTTGTCATCCTCGC 58.976 40.000 0.00 0.00 0.00 5.03
623 2090 2.827322 TGCCATGCTTGCAGAAACTAAT 59.173 40.909 0.87 0.00 34.05 1.73
631 2098 0.815095 TGAGATTGCCATGCTTGCAG 59.185 50.000 0.87 0.00 40.35 4.41
647 2114 5.374921 AGGATGATAATTTCAGCTGGTGAG 58.625 41.667 15.13 0.00 40.67 3.51
649 2116 4.518211 GGAGGATGATAATTTCAGCTGGTG 59.482 45.833 15.13 0.00 40.67 4.17
650 2117 4.414846 AGGAGGATGATAATTTCAGCTGGT 59.585 41.667 15.13 0.00 40.67 4.00
651 2118 4.983053 AGGAGGATGATAATTTCAGCTGG 58.017 43.478 15.13 0.00 40.67 4.85
652 2119 6.060136 TCAAGGAGGATGATAATTTCAGCTG 58.940 40.000 7.63 7.63 40.67 4.24
653 2120 6.257994 TCAAGGAGGATGATAATTTCAGCT 57.742 37.500 6.06 0.00 40.67 4.24
656 2123 6.005066 TGCTCAAGGAGGATGATAATTTCA 57.995 37.500 0.00 0.00 39.12 2.69
657 2124 8.510505 GTTATGCTCAAGGAGGATGATAATTTC 58.489 37.037 10.06 0.00 40.75 2.17
665 2171 5.636965 CGATAAGTTATGCTCAAGGAGGATG 59.363 44.000 10.06 0.00 40.75 3.51
769 2849 8.697507 AATCTTTGGAACATGGAGTAATATCC 57.302 34.615 0.00 0.00 39.30 2.59
776 2856 4.262592 GCCAAAATCTTTGGAACATGGAGT 60.263 41.667 19.88 0.00 42.06 3.85
777 2857 4.248058 GCCAAAATCTTTGGAACATGGAG 58.752 43.478 19.88 0.00 42.06 3.86
778 2858 3.007831 GGCCAAAATCTTTGGAACATGGA 59.992 43.478 19.88 0.00 42.06 3.41
780 2860 3.998341 CAGGCCAAAATCTTTGGAACATG 59.002 43.478 19.88 8.64 42.06 3.21
781 2861 3.557686 GCAGGCCAAAATCTTTGGAACAT 60.558 43.478 19.88 0.61 42.06 2.71
802 2882 4.986708 TTTGGACCCGGCCTTGGC 62.987 66.667 0.00 2.49 0.00 4.52
804 2884 0.250989 TAAGTTTGGACCCGGCCTTG 60.251 55.000 0.00 0.00 0.00 3.61
805 2885 0.251033 GTAAGTTTGGACCCGGCCTT 60.251 55.000 0.00 0.00 0.00 4.35
806 2886 1.377612 GTAAGTTTGGACCCGGCCT 59.622 57.895 0.00 0.00 0.00 5.19
807 2887 2.036571 CGTAAGTTTGGACCCGGCC 61.037 63.158 0.00 0.00 0.00 6.13
808 2888 2.683859 GCGTAAGTTTGGACCCGGC 61.684 63.158 0.00 0.00 41.68 6.13
809 2889 2.385091 CGCGTAAGTTTGGACCCGG 61.385 63.158 0.00 0.00 41.68 5.73
810 2890 1.620413 GACGCGTAAGTTTGGACCCG 61.620 60.000 13.97 0.00 41.68 5.28
811 2891 0.600782 TGACGCGTAAGTTTGGACCC 60.601 55.000 13.97 0.00 41.68 4.46
812 2892 0.788391 CTGACGCGTAAGTTTGGACC 59.212 55.000 13.97 0.00 41.68 4.46
813 2893 0.163146 GCTGACGCGTAAGTTTGGAC 59.837 55.000 24.32 3.20 41.68 4.02
814 2894 0.947180 GGCTGACGCGTAAGTTTGGA 60.947 55.000 24.32 0.00 41.68 3.53
815 2895 1.225376 TGGCTGACGCGTAAGTTTGG 61.225 55.000 24.32 0.04 41.68 3.28
816 2896 0.110823 GTGGCTGACGCGTAAGTTTG 60.111 55.000 24.32 0.45 41.68 2.93
865 4876 7.010091 GGTTACAGTCAAATCAAAACAAACCAG 59.990 37.037 0.00 0.00 33.38 4.00
867 4878 6.020201 CGGTTACAGTCAAATCAAAACAAACC 60.020 38.462 0.00 0.00 0.00 3.27
1007 5019 1.623542 GGATAGCCACCACGGGAGTT 61.624 60.000 0.00 0.00 44.67 3.01
1023 5041 2.347490 GTGCACTCGGTGGTGGAT 59.653 61.111 10.32 0.00 39.53 3.41
1024 5042 4.293648 CGTGCACTCGGTGGTGGA 62.294 66.667 16.19 1.11 37.65 4.02
1256 5277 3.269347 GCGCGATGGCATAACCGT 61.269 61.111 12.10 0.00 43.94 4.83
1603 5654 1.374885 TGGTGACGGCAATGTACGG 60.375 57.895 0.00 0.00 0.00 4.02
1650 5716 2.930950 CTGAGGTTTTGGTCCTGTTGA 58.069 47.619 0.00 0.00 35.20 3.18
1736 5811 4.101448 CCTTGGAGACCAGCGGGG 62.101 72.222 8.08 1.20 44.81 5.73
1842 5917 4.778143 GCGTCCGGCCAGTTGGAT 62.778 66.667 2.24 0.00 36.48 3.41
1890 5971 1.672356 GAAGGAAAGGCAGAGCGCA 60.672 57.895 11.47 0.00 45.17 6.09
1992 6073 2.180769 CGGCGGATGAACTCGACA 59.819 61.111 0.00 0.00 33.34 4.35
2079 6160 2.731721 TTGTAGTGGTGCGACGCG 60.732 61.111 16.14 3.53 0.00 6.01
2211 6296 1.696884 TCCACCTGCATGTAGTTCACA 59.303 47.619 10.09 0.00 42.69 3.58
2408 6493 3.581755 TCGACGAATTTGAACTGGTAGG 58.418 45.455 0.00 0.00 0.00 3.18
2469 6554 1.060937 GATCACGCGCATGTGGTTC 59.939 57.895 5.73 5.95 40.31 3.62
2503 6588 1.665679 CTTGTCGCCGAATGTATGCTT 59.334 47.619 0.00 0.00 0.00 3.91
2852 7209 2.184020 CTTCACGGCCACCTCATCCA 62.184 60.000 2.24 0.00 0.00 3.41
2956 7313 1.480312 CCTCACCTCCATCTCGATCCT 60.480 57.143 0.00 0.00 0.00 3.24
3095 7531 5.330455 TGTTTGCTGGTGTTGTTCATTTA 57.670 34.783 0.00 0.00 0.00 1.40
3130 7601 7.083875 TCTGTTAATTTTTGCCGAGGATTAG 57.916 36.000 0.00 0.00 0.00 1.73
3148 7619 8.706322 AAAATCCCTTAAGAAAAGCTCTGTTA 57.294 30.769 3.36 0.00 33.37 2.41
3250 9862 5.057819 GGTGGCCTAATTCTAGAAACTAGC 58.942 45.833 9.71 10.34 0.00 3.42
3282 9894 8.184848 AGAGACAGAAAAGCTTTGTTTTTCTAC 58.815 33.333 13.54 14.62 46.00 2.59
3536 10301 0.173708 ACGCTCTCCGATTTCAGTCC 59.826 55.000 0.00 0.00 41.02 3.85
3589 10354 1.398692 ACTGCTCTAGCTAGCTGGAC 58.601 55.000 25.33 20.78 43.49 4.02
3675 10440 8.345565 AAATTAAGATTTACCTTGCAGATAGCG 58.654 33.333 0.00 0.00 38.79 4.26
3772 10896 6.371278 ACTAGCCTAGCACTGTACCTAAATA 58.629 40.000 0.00 0.00 0.00 1.40
3778 10921 5.532664 AAATACTAGCCTAGCACTGTACC 57.467 43.478 0.00 0.00 0.00 3.34
4030 11316 3.189618 TCCTAGTGATGCTCTGCAATG 57.810 47.619 0.00 0.00 43.62 2.82
4049 11345 8.926715 ACTTACTGAACCAAAAGAAAACATTC 57.073 30.769 0.00 0.00 0.00 2.67
4099 11395 9.682465 AAGAAATCTTTTAGGAACCATAGGTAC 57.318 33.333 0.00 0.00 30.71 3.34
4291 11588 3.485947 TTTCATTACCTGCATGTTCGC 57.514 42.857 0.00 0.00 0.00 4.70
4395 11692 2.173356 CCCAGATGCTTCCATGGAACTA 59.827 50.000 23.63 14.91 0.00 2.24
4660 11957 1.416030 TGACAGCACAGACAAGGCTAA 59.584 47.619 0.00 0.00 35.82 3.09
4716 12013 2.024414 GTGCCCCCTGATGTTTCATAC 58.976 52.381 0.00 0.00 0.00 2.39
4917 12320 0.682292 GGCTTAGGATCCTTCCCGAG 59.318 60.000 22.03 11.34 43.76 4.63
4957 12360 4.456566 TGGCCGGTAAACAAACTAAATCTC 59.543 41.667 1.90 0.00 0.00 2.75
4988 12391 8.876275 AAAATAATACACACATGATTGCATCC 57.124 30.769 0.00 0.00 30.68 3.51
5251 13655 8.216453 CAGAAAAGAAAACTTTGCCATTATTCG 58.784 33.333 0.00 0.00 0.00 3.34
5438 13842 5.183713 TCGAATCAATCATGTCCAAGCTTTT 59.816 36.000 0.00 0.00 0.00 2.27
5547 13951 5.624344 ACTGATCATGAGAAAAGCAGTTG 57.376 39.130 0.09 0.00 31.71 3.16
5601 14005 4.974368 ATCTCAGTTGACGGAGACTTAG 57.026 45.455 14.62 0.00 46.76 2.18
5625 14033 8.985315 TCTGTCCTATGAAATGCAATTCTATT 57.015 30.769 15.28 3.76 33.67 1.73
5656 14064 1.283613 TGGAACACGAGGGCCATAAAT 59.716 47.619 6.18 0.00 0.00 1.40
5700 14108 7.444183 AGTTCATAACGGATTCAAGAAAACAGA 59.556 33.333 0.00 0.00 36.23 3.41
5701 14109 7.584987 AGTTCATAACGGATTCAAGAAAACAG 58.415 34.615 0.00 0.00 36.23 3.16
5750 14158 6.597672 CACATACCTTCCATGCTTAACAGTTA 59.402 38.462 0.00 0.00 0.00 2.24
5753 14161 5.185454 TCACATACCTTCCATGCTTAACAG 58.815 41.667 0.00 0.00 0.00 3.16
5755 14163 5.880332 TCTTCACATACCTTCCATGCTTAAC 59.120 40.000 0.00 0.00 0.00 2.01
5764 14175 2.380084 TGCGTCTTCACATACCTTCC 57.620 50.000 0.00 0.00 0.00 3.46
5775 14186 7.347508 TCTTTACTCAACTAATTGCGTCTTC 57.652 36.000 0.00 0.00 35.42 2.87
5776 14187 7.225931 TGTTCTTTACTCAACTAATTGCGTCTT 59.774 33.333 0.00 0.00 35.42 3.01
5777 14188 6.704493 TGTTCTTTACTCAACTAATTGCGTCT 59.296 34.615 0.00 0.00 35.42 4.18
5778 14189 6.884187 TGTTCTTTACTCAACTAATTGCGTC 58.116 36.000 0.00 0.00 35.42 5.19
5780 14191 8.555166 TTTTGTTCTTTACTCAACTAATTGCG 57.445 30.769 0.00 0.00 35.63 4.85
5787 14198 8.686334 ACATGACATTTTGTTCTTTACTCAACT 58.314 29.630 0.00 0.00 0.00 3.16
5791 14202 9.515020 TTCAACATGACATTTTGTTCTTTACTC 57.485 29.630 12.78 0.00 33.93 2.59
5797 14208 9.260002 GGTAAATTCAACATGACATTTTGTTCT 57.740 29.630 12.78 1.91 33.93 3.01
5798 14209 9.039870 TGGTAAATTCAACATGACATTTTGTTC 57.960 29.630 12.78 0.00 33.93 3.18
5799 14210 8.954950 TGGTAAATTCAACATGACATTTTGTT 57.045 26.923 12.78 1.18 36.53 2.83
5804 14215 9.373603 CATGAATGGTAAATTCAACATGACATT 57.626 29.630 0.00 0.00 40.84 2.71
5805 14216 7.982919 CCATGAATGGTAAATTCAACATGACAT 59.017 33.333 0.00 6.03 43.05 3.06
5806 14217 7.321908 CCATGAATGGTAAATTCAACATGACA 58.678 34.615 0.00 4.46 43.05 3.58
5807 14218 7.760131 CCATGAATGGTAAATTCAACATGAC 57.240 36.000 0.00 0.10 43.05 3.06
5821 14232 8.506734 AATGTAATTGAGTGAGCCATGAATGGT 61.507 37.037 10.94 0.00 42.35 3.55
5822 14233 6.183360 AATGTAATTGAGTGAGCCATGAATGG 60.183 38.462 4.87 4.87 42.91 3.16
5823 14234 5.823209 TGTAATTGAGTGAGCCATGAATG 57.177 39.130 0.00 0.00 0.00 2.67
5824 14235 8.573885 CATAATGTAATTGAGTGAGCCATGAAT 58.426 33.333 0.00 0.00 36.99 2.57
5825 14236 7.774625 TCATAATGTAATTGAGTGAGCCATGAA 59.225 33.333 0.00 0.00 36.99 2.57
5826 14237 7.227314 GTCATAATGTAATTGAGTGAGCCATGA 59.773 37.037 0.00 0.00 36.99 3.07
5827 14238 7.012610 TGTCATAATGTAATTGAGTGAGCCATG 59.987 37.037 0.00 0.00 36.99 3.66
5828 14239 7.056006 TGTCATAATGTAATTGAGTGAGCCAT 58.944 34.615 0.00 0.00 36.99 4.40
5829 14240 6.413892 TGTCATAATGTAATTGAGTGAGCCA 58.586 36.000 0.00 0.00 36.99 4.75
5830 14241 6.925610 TGTCATAATGTAATTGAGTGAGCC 57.074 37.500 0.00 0.00 36.99 4.70
5831 14242 9.481340 TCTATGTCATAATGTAATTGAGTGAGC 57.519 33.333 0.00 0.00 36.99 4.26
5844 14255 9.295825 AGAGGACTCTAGTTCTATGTCATAATG 57.704 37.037 0.00 0.00 38.35 1.90
5848 14259 9.702253 TTTTAGAGGACTCTAGTTCTATGTCAT 57.298 33.333 8.86 0.00 42.50 3.06
5874 14285 7.599245 CCGACAACTCTAGTTCTATGTCTTTTT 59.401 37.037 9.70 0.00 35.83 1.94
5875 14286 7.091443 CCGACAACTCTAGTTCTATGTCTTTT 58.909 38.462 9.70 0.00 35.83 2.27
5876 14287 6.208994 ACCGACAACTCTAGTTCTATGTCTTT 59.791 38.462 9.70 0.00 35.83 2.52
5877 14288 5.711036 ACCGACAACTCTAGTTCTATGTCTT 59.289 40.000 9.70 0.00 35.83 3.01
5878 14289 5.254901 ACCGACAACTCTAGTTCTATGTCT 58.745 41.667 9.70 0.00 35.83 3.41
5879 14290 5.564048 ACCGACAACTCTAGTTCTATGTC 57.436 43.478 0.00 0.00 35.83 3.06
5880 14291 5.979288 AACCGACAACTCTAGTTCTATGT 57.021 39.130 0.00 0.00 35.83 2.29
5881 14292 6.308282 GTGAAACCGACAACTCTAGTTCTATG 59.692 42.308 0.00 0.00 35.83 2.23
5882 14293 6.015688 TGTGAAACCGACAACTCTAGTTCTAT 60.016 38.462 0.00 0.00 33.23 1.98
5883 14294 5.300034 TGTGAAACCGACAACTCTAGTTCTA 59.700 40.000 0.00 0.00 33.23 2.10
5884 14295 4.098960 TGTGAAACCGACAACTCTAGTTCT 59.901 41.667 0.00 0.00 33.23 3.01
5885 14296 4.365723 TGTGAAACCGACAACTCTAGTTC 58.634 43.478 0.00 0.00 33.23 3.01
5886 14297 4.395959 TGTGAAACCGACAACTCTAGTT 57.604 40.909 0.00 0.00 35.30 2.24
5887 14298 4.395959 TTGTGAAACCGACAACTCTAGT 57.604 40.909 0.00 0.00 34.36 2.57
5888 14299 5.079397 GTTTGTGAAACCGACAACTCTAG 57.921 43.478 0.00 0.00 33.06 2.43
6239 14650 5.137524 TGTATACGCAATTGATGACGTTG 57.862 39.130 10.34 0.00 40.50 4.10
6273 14684 8.792633 GTGCTACTATCTCTATGACTGAATCTT 58.207 37.037 0.00 0.00 0.00 2.40
6274 14685 7.941790 TGTGCTACTATCTCTATGACTGAATCT 59.058 37.037 0.00 0.00 0.00 2.40
6275 14686 8.105097 TGTGCTACTATCTCTATGACTGAATC 57.895 38.462 0.00 0.00 0.00 2.52
6276 14687 8.648698 ATGTGCTACTATCTCTATGACTGAAT 57.351 34.615 0.00 0.00 0.00 2.57
6279 14690 7.880105 TGAATGTGCTACTATCTCTATGACTG 58.120 38.462 0.00 0.00 0.00 3.51
6280 14691 8.648698 ATGAATGTGCTACTATCTCTATGACT 57.351 34.615 0.00 0.00 0.00 3.41
6312 15651 4.755123 AGCAGTTGCACGAACTAGTTTATT 59.245 37.500 10.02 0.00 43.52 1.40
6321 15660 0.586319 TTGCTAGCAGTTGCACGAAC 59.414 50.000 18.45 0.00 45.16 3.95
6354 16123 6.207417 CAGGCCAGAAAGTCAGAAAATTAAGA 59.793 38.462 5.01 0.00 0.00 2.10
6366 16135 0.676151 CAGAGCCAGGCCAGAAAGTC 60.676 60.000 8.22 0.00 0.00 3.01
6367 16136 1.377994 CAGAGCCAGGCCAGAAAGT 59.622 57.895 8.22 0.00 0.00 2.66
6376 16145 6.480320 GTCACTAACAATTATACAGAGCCAGG 59.520 42.308 0.00 0.00 0.00 4.45
6381 16150 9.653287 TTGAAGGTCACTAACAATTATACAGAG 57.347 33.333 0.00 0.00 0.00 3.35
6385 16154 9.503427 GCATTTGAAGGTCACTAACAATTATAC 57.497 33.333 0.00 0.00 0.00 1.47
6389 16158 6.403866 TGCATTTGAAGGTCACTAACAATT 57.596 33.333 0.00 0.00 0.00 2.32
6390 16159 6.594788 ATGCATTTGAAGGTCACTAACAAT 57.405 33.333 0.00 0.00 0.00 2.71
6391 16160 6.403866 AATGCATTTGAAGGTCACTAACAA 57.596 33.333 5.99 0.00 0.00 2.83
6394 16163 7.392953 TGACATAATGCATTTGAAGGTCACTAA 59.607 33.333 18.75 0.00 0.00 2.24
6395 16164 6.883756 TGACATAATGCATTTGAAGGTCACTA 59.116 34.615 18.75 0.00 0.00 2.74
6396 16165 5.711506 TGACATAATGCATTTGAAGGTCACT 59.288 36.000 18.75 0.00 0.00 3.41
6444 16215 8.586273 CATGCCGACAAATTCTACATTAAAAAG 58.414 33.333 0.00 0.00 0.00 2.27
6448 16219 6.597672 AGACATGCCGACAAATTCTACATTAA 59.402 34.615 0.00 0.00 0.00 1.40
6554 16325 3.440522 TGTACTGATTCACTCTCTCCACG 59.559 47.826 0.00 0.00 0.00 4.94
6563 16334 4.160626 GGAAGGCTACTGTACTGATTCACT 59.839 45.833 6.77 0.00 0.00 3.41
6597 16368 3.074538 AGACAATCTGTTAAAGCCCCTGT 59.925 43.478 0.00 0.00 0.00 4.00
6605 16376 4.753107 GTGGGACGAAGACAATCTGTTAAA 59.247 41.667 0.00 0.00 0.00 1.52
6608 16379 2.767505 GTGGGACGAAGACAATCTGTT 58.232 47.619 0.00 0.00 0.00 3.16
6609 16380 1.336887 CGTGGGACGAAGACAATCTGT 60.337 52.381 0.00 0.00 46.05 3.41
6620 16391 2.030401 CCAATTTCGCGTGGGACGA 61.030 57.895 5.77 0.00 46.05 4.20
6680 16451 9.755804 AGAATCAACAAAAGAAAAGAGGAATTC 57.244 29.630 0.00 0.00 0.00 2.17
6686 16459 9.591792 AAAGGAAGAATCAACAAAAGAAAAGAG 57.408 29.630 0.00 0.00 0.00 2.85
6715 16489 8.637196 AATAGTAGCCTACAAAAAGAAGCTTT 57.363 30.769 0.00 0.00 0.00 3.51
6731 16505 3.305471 CGGTTGCCTAGAGAATAGTAGCC 60.305 52.174 0.00 0.00 0.00 3.93
6748 16522 1.659098 GTGGCTCGTTTCTATCGGTTG 59.341 52.381 0.00 0.00 0.00 3.77
6749 16523 1.274167 TGTGGCTCGTTTCTATCGGTT 59.726 47.619 0.00 0.00 0.00 4.44
6752 16526 4.334443 CATTTTGTGGCTCGTTTCTATCG 58.666 43.478 0.00 0.00 0.00 2.92
6761 16535 1.269206 ACAACAGCATTTTGTGGCTCG 60.269 47.619 0.00 0.00 38.56 5.03
6856 16635 2.316108 GTCCTTCCCACAACACCAATT 58.684 47.619 0.00 0.00 0.00 2.32
6862 16641 2.833227 CCGGTCCTTCCCACAACA 59.167 61.111 0.00 0.00 0.00 3.33
7125 16910 4.436242 TCACAGAGGAAGTTCGTGTATC 57.564 45.455 2.13 0.00 0.00 2.24
7485 17551 8.576442 CAAGTAACAATGTCATTTACTTCCCTT 58.424 33.333 15.32 2.87 41.81 3.95
7547 17640 5.975693 TTTGGCTATTTTCACCGAAGAAT 57.024 34.783 0.00 0.00 0.00 2.40
7548 17641 5.975693 ATTTGGCTATTTTCACCGAAGAA 57.024 34.783 0.00 0.00 30.41 2.52
7553 17794 4.398044 ACAGGTATTTGGCTATTTTCACCG 59.602 41.667 0.00 0.00 0.00 4.94
7559 17829 5.395546 CCATGCAACAGGTATTTGGCTATTT 60.396 40.000 0.00 0.00 0.00 1.40
7565 17835 3.959535 AACCATGCAACAGGTATTTGG 57.040 42.857 8.98 2.70 37.07 3.28
7595 17865 0.398318 AGTTCTCACCCAAGTCAGCC 59.602 55.000 0.00 0.00 0.00 4.85
7598 17868 1.694150 CTCCAGTTCTCACCCAAGTCA 59.306 52.381 0.00 0.00 0.00 3.41
7602 17872 1.371183 CGCTCCAGTTCTCACCCAA 59.629 57.895 0.00 0.00 0.00 4.12
7693 17963 1.445238 GAGTCGACAGAGGCAGTGC 60.445 63.158 19.50 6.55 0.00 4.40
7697 17967 1.118965 TTTGGGAGTCGACAGAGGCA 61.119 55.000 19.50 0.00 0.00 4.75
7842 18112 4.332828 GTGTATGTAACAGAAAAGGGGCT 58.667 43.478 0.00 0.00 39.29 5.19
7885 18155 7.985752 ACTAGCCCTGAAACAGTAAATACATAC 59.014 37.037 0.00 0.00 0.00 2.39
7887 18157 6.823689 CACTAGCCCTGAAACAGTAAATACAT 59.176 38.462 0.00 0.00 0.00 2.29
7889 18159 6.403878 TCACTAGCCCTGAAACAGTAAATAC 58.596 40.000 0.00 0.00 0.00 1.89
7890 18160 6.614694 TCACTAGCCCTGAAACAGTAAATA 57.385 37.500 0.00 0.00 0.00 1.40
7891 18161 5.499004 TCACTAGCCCTGAAACAGTAAAT 57.501 39.130 0.00 0.00 0.00 1.40
7907 18233 4.328440 CGGAGCATCAAACTCTTTCACTAG 59.672 45.833 0.00 0.00 36.25 2.57
7930 18256 1.377536 GCCTTCTCATCAGCTTGGAC 58.622 55.000 0.00 0.00 0.00 4.02
7943 18269 1.545651 CCCGAAAACTGAAGGCCTTCT 60.546 52.381 38.38 23.05 40.14 2.85
7965 18291 3.055819 GCTTGAGTACTCCTGAACCATCA 60.056 47.826 20.11 0.00 0.00 3.07
8015 18341 3.797256 GCTTTACTAGGTAGACATGCACG 59.203 47.826 0.00 0.00 0.00 5.34
8199 18530 4.515191 GCACAAACTGTAGAGATTGGACAA 59.485 41.667 13.38 0.00 36.52 3.18
8201 18532 4.065088 TGCACAAACTGTAGAGATTGGAC 58.935 43.478 13.38 6.25 36.52 4.02
8210 18541 1.603802 CCTGTGGTGCACAAACTGTAG 59.396 52.381 20.43 9.49 44.08 2.74
8211 18542 1.065053 ACCTGTGGTGCACAAACTGTA 60.065 47.619 20.43 0.03 44.08 2.74
8212 18543 0.323360 ACCTGTGGTGCACAAACTGT 60.323 50.000 20.43 13.83 44.08 3.55
8213 18544 2.492418 ACCTGTGGTGCACAAACTG 58.508 52.632 20.43 18.21 44.08 3.16
8223 18554 1.600636 CGAACATGGCACCTGTGGT 60.601 57.895 0.00 0.00 35.62 4.16
8224 18555 2.334946 CCGAACATGGCACCTGTGG 61.335 63.158 0.00 0.00 0.00 4.17
8225 18556 3.266964 CCGAACATGGCACCTGTG 58.733 61.111 0.00 0.00 0.00 3.66
8250 18581 0.601311 CGAGCCCCGGATCTTGATTC 60.601 60.000 0.73 0.00 33.91 2.52
8274 18605 3.492313 GTTTGACAGATGGCTAAAAGCG 58.508 45.455 0.00 0.00 43.62 4.68
8275 18606 3.058224 ACGTTTGACAGATGGCTAAAAGC 60.058 43.478 0.00 0.00 41.46 3.51
8288 18619 2.729467 CGGAAAAGCAACACGTTTGACA 60.729 45.455 12.62 0.00 29.53 3.58
8289 18620 1.843753 CGGAAAAGCAACACGTTTGAC 59.156 47.619 12.62 6.00 29.53 3.18
8311 18642 4.135153 CCCCGAGACCTCACGCAG 62.135 72.222 0.00 0.00 0.00 5.18
8329 18660 1.153168 CCACCGGTCCCATTAGCTG 60.153 63.158 2.59 0.00 0.00 4.24
8332 18663 1.153168 CAGCCACCGGTCCCATTAG 60.153 63.158 2.59 0.00 0.00 1.73
8333 18664 0.618107 TACAGCCACCGGTCCCATTA 60.618 55.000 2.59 0.00 0.00 1.90
8336 18667 2.527123 TTACAGCCACCGGTCCCA 60.527 61.111 2.59 0.00 0.00 4.37
8337 18668 2.120737 AACTTACAGCCACCGGTCCC 62.121 60.000 2.59 0.00 0.00 4.46
8343 18674 3.756963 CTCCCTAAAAACTTACAGCCACC 59.243 47.826 0.00 0.00 0.00 4.61
8363 18694 1.082104 CGAACGCCAGCCAAAACTC 60.082 57.895 0.00 0.00 0.00 3.01
8366 18697 3.972276 GCCGAACGCCAGCCAAAA 61.972 61.111 0.00 0.00 0.00 2.44
8381 18712 0.750911 CAAGATTGGAGCCTCCTGCC 60.751 60.000 12.94 0.60 42.71 4.85
8385 18716 1.815003 CACAACAAGATTGGAGCCTCC 59.185 52.381 2.98 2.98 36.96 4.30
8392 18723 5.659463 TCTCCAAAAACACAACAAGATTGG 58.341 37.500 0.00 0.00 37.71 3.16
8411 18750 1.610327 GGAGGCCCCTCTTTTCTCC 59.390 63.158 13.65 0.00 42.38 3.71
8432 18771 7.328493 GGTTTTCTGTTAAAATGAAATCGGAGG 59.672 37.037 0.00 0.00 31.08 4.30
8436 18775 7.116233 CCCTGGTTTTCTGTTAAAATGAAATCG 59.884 37.037 0.00 0.00 31.08 3.34
8437 18776 7.931407 ACCCTGGTTTTCTGTTAAAATGAAATC 59.069 33.333 0.00 0.00 31.08 2.17
8444 18783 6.437793 TCAAAGACCCTGGTTTTCTGTTAAAA 59.562 34.615 0.00 0.00 0.00 1.52
8476 18815 8.503458 TCTATTAGTATCGGTAATCTGGTAGC 57.497 38.462 0.00 0.00 0.00 3.58
8480 18819 8.304596 TGCTTTCTATTAGTATCGGTAATCTGG 58.695 37.037 0.00 0.00 0.00 3.86
8481 18820 9.692749 TTGCTTTCTATTAGTATCGGTAATCTG 57.307 33.333 0.00 0.00 0.00 2.90
8482 18821 9.694137 GTTGCTTTCTATTAGTATCGGTAATCT 57.306 33.333 0.00 0.00 0.00 2.40
8483 18822 9.694137 AGTTGCTTTCTATTAGTATCGGTAATC 57.306 33.333 0.00 0.00 0.00 1.75
8485 18824 8.689061 TGAGTTGCTTTCTATTAGTATCGGTAA 58.311 33.333 0.00 0.00 0.00 2.85
8486 18825 8.229253 TGAGTTGCTTTCTATTAGTATCGGTA 57.771 34.615 0.00 0.00 0.00 4.02
8488 18827 6.642950 CCTGAGTTGCTTTCTATTAGTATCGG 59.357 42.308 0.00 0.00 0.00 4.18
8489 18828 7.380065 GTCCTGAGTTGCTTTCTATTAGTATCG 59.620 40.741 0.00 0.00 0.00 2.92
8490 18829 8.417884 AGTCCTGAGTTGCTTTCTATTAGTATC 58.582 37.037 0.00 0.00 0.00 2.24
8491 18830 8.312669 AGTCCTGAGTTGCTTTCTATTAGTAT 57.687 34.615 0.00 0.00 0.00 2.12
8510 18852 0.679505 TTGAACCGTCTGGAGTCCTG 59.320 55.000 11.33 10.48 39.21 3.86
8515 18857 0.951040 GCTGGTTGAACCGTCTGGAG 60.951 60.000 10.16 1.25 42.58 3.86
8520 18862 0.736053 TTTGTGCTGGTTGAACCGTC 59.264 50.000 10.16 4.34 42.58 4.79
8521 18863 1.178276 TTTTGTGCTGGTTGAACCGT 58.822 45.000 10.16 0.00 42.58 4.83
8522 18864 2.507339 ATTTTGTGCTGGTTGAACCG 57.493 45.000 10.16 5.89 42.58 4.44
8551 18893 5.360144 GGAAAGTGAGAGTGGTAGCTGTATA 59.640 44.000 0.00 0.00 0.00 1.47
8561 18903 1.902508 TGCTAGGGAAAGTGAGAGTGG 59.097 52.381 0.00 0.00 0.00 4.00
8563 18905 3.391296 TGTTTGCTAGGGAAAGTGAGAGT 59.609 43.478 0.00 0.00 0.00 3.24
8564 18906 4.008074 TGTTTGCTAGGGAAAGTGAGAG 57.992 45.455 0.00 0.00 0.00 3.20
8565 18907 4.640771 ATGTTTGCTAGGGAAAGTGAGA 57.359 40.909 0.00 0.00 0.00 3.27
8566 18908 5.245531 TGTATGTTTGCTAGGGAAAGTGAG 58.754 41.667 0.00 0.00 0.00 3.51
8567 18909 5.235850 TGTATGTTTGCTAGGGAAAGTGA 57.764 39.130 0.00 0.00 0.00 3.41
8629 19173 4.398988 TCTGTTGGTATGGCTGCTATTTTG 59.601 41.667 3.18 0.00 0.00 2.44
8654 19198 9.769093 TTTTTCGAAAGTTTATAAGCATCTAGC 57.231 29.630 10.98 0.00 46.19 3.42
8709 19253 9.295825 AGTCTGAATACTATTCCTACTGATCTG 57.704 37.037 6.37 0.00 0.00 2.90
8725 19269 6.787085 ACAGTGTGCTTTTAGTCTGAATAC 57.213 37.500 0.00 0.00 0.00 1.89
8731 19275 6.992715 AGTTTGATACAGTGTGCTTTTAGTCT 59.007 34.615 5.88 0.00 0.00 3.24
8737 19281 6.759272 TCTAGAGTTTGATACAGTGTGCTTT 58.241 36.000 5.88 0.00 0.00 3.51
8795 19340 5.010282 GGACAAGATAAAACTGTGGACCAT 58.990 41.667 0.00 0.00 0.00 3.55
8852 19397 9.950680 GTTGACAAAGATAATCAGTTGAAAAGA 57.049 29.630 0.00 0.00 0.00 2.52
8919 19464 3.257469 GGGAAGTTAAAGTACCTCCCG 57.743 52.381 0.00 0.00 38.64 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.