Multiple sequence alignment - TraesCS2D01G055000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G055000 chr2D 100.000 3218 0 0 1 3218 22143329 22146546 0.000000e+00 5943.0
1 TraesCS2D01G055000 chr2D 87.140 1283 137 17 1945 3218 22156081 22157344 0.000000e+00 1430.0
2 TraesCS2D01G055000 chr2D 81.485 1145 179 20 2001 3126 22120748 22121878 0.000000e+00 909.0
3 TraesCS2D01G055000 chr2D 87.111 675 73 9 1029 1695 22155329 22155997 0.000000e+00 752.0
4 TraesCS2D01G055000 chr2D 100.000 388 0 0 3482 3869 22146810 22147197 0.000000e+00 717.0
5 TraesCS2D01G055000 chr2D 86.316 665 77 9 1013 1670 22119416 22120073 0.000000e+00 712.0
6 TraesCS2D01G055000 chr2D 83.746 646 97 5 1028 1666 21555890 21555246 4.280000e-169 604.0
7 TraesCS2D01G055000 chr2D 90.051 392 32 2 3482 3867 22157413 22157803 5.770000e-138 501.0
8 TraesCS2D01G055000 chr2D 100.000 70 0 0 649 718 75666363 75666432 3.140000e-26 130.0
9 TraesCS2D01G055000 chr2D 100.000 31 0 0 896 926 22155168 22155198 1.500000e-04 58.4
10 TraesCS2D01G055000 chr2A 91.271 1306 76 16 1920 3218 23971501 23972775 0.000000e+00 1746.0
11 TraesCS2D01G055000 chr2A 92.121 863 50 10 903 1758 23970645 23971496 0.000000e+00 1201.0
12 TraesCS2D01G055000 chr2A 81.310 1145 181 19 2001 3126 23960066 23961196 0.000000e+00 898.0
13 TraesCS2D01G055000 chr2A 86.898 664 75 10 1013 1670 23958840 23959497 0.000000e+00 734.0
14 TraesCS2D01G055000 chr2A 84.834 633 88 4 1040 1665 22573544 22572913 7.050000e-177 630.0
15 TraesCS2D01G055000 chr2A 83.544 395 31 15 3482 3869 23972851 23973218 4.790000e-89 339.0
16 TraesCS2D01G055000 chr2A 94.565 92 3 2 559 650 23970236 23970325 1.450000e-29 141.0
17 TraesCS2D01G055000 chr2A 96.875 32 1 0 496 527 23970193 23970224 2.000000e-03 54.7
18 TraesCS2D01G055000 chr2B 90.902 1253 89 15 1961 3209 35284132 35285363 0.000000e+00 1659.0
19 TraesCS2D01G055000 chr2B 88.907 1253 97 19 1963 3208 35312540 35313757 0.000000e+00 1506.0
20 TraesCS2D01G055000 chr2B 90.051 1166 88 16 1957 3120 35276717 35277856 0.000000e+00 1485.0
21 TraesCS2D01G055000 chr2B 88.418 967 97 10 2165 3126 35309193 35310149 0.000000e+00 1151.0
22 TraesCS2D01G055000 chr2B 85.160 1031 128 20 1945 2961 35135518 35136537 0.000000e+00 1033.0
23 TraesCS2D01G055000 chr2B 92.857 560 37 1 936 1495 35274714 35275270 0.000000e+00 809.0
24 TraesCS2D01G055000 chr2B 89.367 395 32 4 3482 3869 35285442 35285833 4.490000e-134 488.0
25 TraesCS2D01G055000 chr2B 89.791 382 30 4 3482 3856 35313835 35314214 7.520000e-132 481.0
26 TraesCS2D01G055000 chr2B 93.040 273 19 0 1484 1756 35276352 35276624 2.170000e-107 399.0
27 TraesCS2D01G055000 chr2B 94.624 93 4 1 559 651 35274478 35274569 4.030000e-30 143.0
28 TraesCS2D01G055000 chr2B 81.119 143 25 2 1780 1921 556203206 556203065 3.160000e-21 113.0
29 TraesCS2D01G055000 chr2B 100.000 31 0 0 896 926 35134689 35134719 1.500000e-04 58.4
30 TraesCS2D01G055000 chr5A 85.938 704 88 9 1013 1707 327573896 327574597 0.000000e+00 741.0
31 TraesCS2D01G055000 chr5A 78.378 925 179 15 1983 2903 327579314 327580221 7.210000e-162 580.0
32 TraesCS2D01G055000 chr5A 78.643 796 131 22 2183 2974 71233063 71232303 3.470000e-135 492.0
33 TraesCS2D01G055000 chr5D 85.513 711 92 9 1006 1707 229153978 229153270 0.000000e+00 732.0
34 TraesCS2D01G055000 chr5D 86.646 659 73 10 1016 1668 75913145 75912496 0.000000e+00 715.0
35 TraesCS2D01G055000 chr5D 78.059 989 177 28 2001 2974 229152388 229151425 4.310000e-164 588.0
36 TraesCS2D01G055000 chr5D 78.761 565 85 8 2183 2745 75761037 75760506 2.860000e-91 346.0
37 TraesCS2D01G055000 chr5D 97.059 68 2 0 649 716 277645404 277645471 8.780000e-22 115.0
38 TraesCS2D01G055000 chr5D 97.015 67 1 1 649 715 282339025 282338960 1.140000e-20 111.0
39 TraesCS2D01G055000 chr5B 78.683 957 174 20 2001 2947 276669354 276670290 9.190000e-171 610.0
40 TraesCS2D01G055000 chr5B 81.507 146 26 1 1777 1921 541162491 541162636 6.790000e-23 119.0
41 TraesCS2D01G055000 chr6A 81.707 246 37 7 1 243 35323269 35323509 8.480000e-47 198.0
42 TraesCS2D01G055000 chr6B 84.615 143 18 4 1783 1922 256326280 256326139 5.210000e-29 139.0
43 TraesCS2D01G055000 chr7B 84.028 144 18 5 1780 1921 592501980 592502120 2.430000e-27 134.0
44 TraesCS2D01G055000 chr7B 82.517 143 24 1 1780 1921 106542725 106542867 1.460000e-24 124.0
45 TraesCS2D01G055000 chr7D 82.877 146 22 3 1780 1923 84347729 84347873 1.130000e-25 128.0
46 TraesCS2D01G055000 chr7D 100.000 66 0 0 649 714 596955463 596955528 5.250000e-24 122.0
47 TraesCS2D01G055000 chr7D 95.946 74 2 1 649 721 402332341 402332414 6.790000e-23 119.0
48 TraesCS2D01G055000 chr7D 97.101 69 2 0 649 717 52261339 52261271 2.440000e-22 117.0
49 TraesCS2D01G055000 chr7D 81.250 144 24 3 1780 1921 141135506 141135364 3.160000e-21 113.0
50 TraesCS2D01G055000 chr3D 100.000 69 0 0 649 717 520368054 520368122 1.130000e-25 128.0
51 TraesCS2D01G055000 chr6D 100.000 68 0 0 649 716 52532526 52532459 4.060000e-25 126.0
52 TraesCS2D01G055000 chr3A 83.333 132 21 1 1780 1910 600923097 600923228 1.890000e-23 121.0
53 TraesCS2D01G055000 chr3A 81.379 145 24 3 1780 1923 21364478 21364620 8.780000e-22 115.0
54 TraesCS2D01G055000 chr1B 97.015 67 2 0 649 715 357453584 357453518 3.160000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G055000 chr2D 22143329 22147197 3868 False 3330.00 5943 100.000000 1 3869 2 chr2D.!!$F3 3868
1 TraesCS2D01G055000 chr2D 22119416 22121878 2462 False 810.50 909 83.900500 1013 3126 2 chr2D.!!$F2 2113
2 TraesCS2D01G055000 chr2D 22155168 22157803 2635 False 685.35 1430 91.075500 896 3867 4 chr2D.!!$F4 2971
3 TraesCS2D01G055000 chr2D 21555246 21555890 644 True 604.00 604 83.746000 1028 1666 1 chr2D.!!$R1 638
4 TraesCS2D01G055000 chr2A 23958840 23961196 2356 False 816.00 898 84.104000 1013 3126 2 chr2A.!!$F1 2113
5 TraesCS2D01G055000 chr2A 23970193 23973218 3025 False 696.34 1746 91.675200 496 3869 5 chr2A.!!$F2 3373
6 TraesCS2D01G055000 chr2A 22572913 22573544 631 True 630.00 630 84.834000 1040 1665 1 chr2A.!!$R1 625
7 TraesCS2D01G055000 chr2B 35284132 35285833 1701 False 1073.50 1659 90.134500 1961 3869 2 chr2B.!!$F3 1908
8 TraesCS2D01G055000 chr2B 35309193 35314214 5021 False 1046.00 1506 89.038667 1963 3856 3 chr2B.!!$F4 1893
9 TraesCS2D01G055000 chr2B 35274478 35277856 3378 False 709.00 1485 92.643000 559 3120 4 chr2B.!!$F2 2561
10 TraesCS2D01G055000 chr2B 35134689 35136537 1848 False 545.70 1033 92.580000 896 2961 2 chr2B.!!$F1 2065
11 TraesCS2D01G055000 chr5A 327573896 327574597 701 False 741.00 741 85.938000 1013 1707 1 chr5A.!!$F1 694
12 TraesCS2D01G055000 chr5A 327579314 327580221 907 False 580.00 580 78.378000 1983 2903 1 chr5A.!!$F2 920
13 TraesCS2D01G055000 chr5A 71232303 71233063 760 True 492.00 492 78.643000 2183 2974 1 chr5A.!!$R1 791
14 TraesCS2D01G055000 chr5D 75912496 75913145 649 True 715.00 715 86.646000 1016 1668 1 chr5D.!!$R2 652
15 TraesCS2D01G055000 chr5D 229151425 229153978 2553 True 660.00 732 81.786000 1006 2974 2 chr5D.!!$R4 1968
16 TraesCS2D01G055000 chr5D 75760506 75761037 531 True 346.00 346 78.761000 2183 2745 1 chr5D.!!$R1 562
17 TraesCS2D01G055000 chr5B 276669354 276670290 936 False 610.00 610 78.683000 2001 2947 1 chr5B.!!$F1 946

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
551 552 0.038744 AAGATTGGAGCCACAGTGGG 59.961 55.0 21.77 3.21 38.19 4.61 F
866 1050 0.388520 GACACCCAAGCGCAAAATCC 60.389 55.0 11.47 0.00 0.00 3.01 F
2215 4752 0.387622 TTTCTCCAACTACGACGCGG 60.388 55.0 12.47 0.00 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 2910 0.603569 CTGCCCGATAGCCGTCTTAT 59.396 55.0 0.00 0.0 36.31 1.73 R
2376 4913 1.199615 TCATACCGATGGCCTTGTGA 58.800 50.0 3.32 0.0 33.49 3.58 R
3181 5757 0.034574 TGCCCCGTAGATGCACATTT 60.035 50.0 0.00 0.0 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.185315 CCACTTTTATGGGTGGCAGG 58.815 55.000 0.00 0.00 44.94 4.85
22 23 1.549950 CCACTTTTATGGGTGGCAGGT 60.550 52.381 0.00 0.00 44.94 4.00
23 24 1.545582 CACTTTTATGGGTGGCAGGTG 59.454 52.381 0.00 0.00 0.00 4.00
24 25 1.185315 CTTTTATGGGTGGCAGGTGG 58.815 55.000 0.00 0.00 0.00 4.61
25 26 0.780637 TTTTATGGGTGGCAGGTGGA 59.219 50.000 0.00 0.00 0.00 4.02
26 27 1.006813 TTTATGGGTGGCAGGTGGAT 58.993 50.000 0.00 0.00 0.00 3.41
27 28 1.900254 TTATGGGTGGCAGGTGGATA 58.100 50.000 0.00 0.00 0.00 2.59
28 29 1.900254 TATGGGTGGCAGGTGGATAA 58.100 50.000 0.00 0.00 0.00 1.75
29 30 1.234806 ATGGGTGGCAGGTGGATAAT 58.765 50.000 0.00 0.00 0.00 1.28
30 31 1.006813 TGGGTGGCAGGTGGATAATT 58.993 50.000 0.00 0.00 0.00 1.40
31 32 1.360852 TGGGTGGCAGGTGGATAATTT 59.639 47.619 0.00 0.00 0.00 1.82
32 33 2.583101 TGGGTGGCAGGTGGATAATTTA 59.417 45.455 0.00 0.00 0.00 1.40
33 34 2.956333 GGGTGGCAGGTGGATAATTTAC 59.044 50.000 0.00 0.00 0.00 2.01
35 36 4.278310 GGTGGCAGGTGGATAATTTACTT 58.722 43.478 0.00 0.00 0.00 2.24
36 37 4.338400 GGTGGCAGGTGGATAATTTACTTC 59.662 45.833 0.00 0.00 0.00 3.01
37 38 4.947388 GTGGCAGGTGGATAATTTACTTCA 59.053 41.667 0.00 0.00 0.00 3.02
38 39 5.066505 GTGGCAGGTGGATAATTTACTTCAG 59.933 44.000 0.00 0.00 0.00 3.02
39 40 4.036852 GGCAGGTGGATAATTTACTTCAGC 59.963 45.833 0.00 0.00 0.00 4.26
40 41 4.884164 GCAGGTGGATAATTTACTTCAGCT 59.116 41.667 0.00 0.00 33.95 4.24
41 42 5.358160 GCAGGTGGATAATTTACTTCAGCTT 59.642 40.000 0.00 0.00 31.75 3.74
44 45 8.616076 CAGGTGGATAATTTACTTCAGCTTTAG 58.384 37.037 0.00 0.00 31.75 1.85
46 47 7.013369 GGTGGATAATTTACTTCAGCTTTAGGG 59.987 40.741 0.00 0.00 0.00 3.53
47 48 7.013369 GTGGATAATTTACTTCAGCTTTAGGGG 59.987 40.741 0.00 0.00 0.00 4.79
48 49 7.061054 GGATAATTTACTTCAGCTTTAGGGGT 58.939 38.462 0.00 0.00 0.00 4.95
49 50 7.013369 GGATAATTTACTTCAGCTTTAGGGGTG 59.987 40.741 0.00 0.00 36.21 4.61
50 51 3.713826 TTACTTCAGCTTTAGGGGTGG 57.286 47.619 0.00 0.00 35.67 4.61
51 52 1.446016 ACTTCAGCTTTAGGGGTGGT 58.554 50.000 0.00 0.00 35.67 4.16
52 53 1.780919 ACTTCAGCTTTAGGGGTGGTT 59.219 47.619 0.00 0.00 35.67 3.67
53 54 2.177016 ACTTCAGCTTTAGGGGTGGTTT 59.823 45.455 0.00 0.00 35.67 3.27
54 55 3.230976 CTTCAGCTTTAGGGGTGGTTTT 58.769 45.455 0.00 0.00 35.67 2.43
55 56 2.593026 TCAGCTTTAGGGGTGGTTTTG 58.407 47.619 0.00 0.00 35.67 2.44
57 58 3.165071 CAGCTTTAGGGGTGGTTTTGAT 58.835 45.455 0.00 0.00 0.00 2.57
58 59 3.056607 CAGCTTTAGGGGTGGTTTTGATG 60.057 47.826 0.00 0.00 0.00 3.07
60 61 3.056821 GCTTTAGGGGTGGTTTTGATGAC 60.057 47.826 0.00 0.00 0.00 3.06
63 64 1.780309 AGGGGTGGTTTTGATGACAGA 59.220 47.619 0.00 0.00 0.00 3.41
64 65 1.886542 GGGGTGGTTTTGATGACAGAC 59.113 52.381 0.00 0.00 0.00 3.51
65 66 2.489073 GGGGTGGTTTTGATGACAGACT 60.489 50.000 0.00 0.00 0.00 3.24
66 67 3.244770 GGGGTGGTTTTGATGACAGACTA 60.245 47.826 0.00 0.00 0.00 2.59
67 68 4.394729 GGGTGGTTTTGATGACAGACTAA 58.605 43.478 0.00 0.00 0.00 2.24
68 69 4.825085 GGGTGGTTTTGATGACAGACTAAA 59.175 41.667 0.00 0.00 0.00 1.85
69 70 5.300792 GGGTGGTTTTGATGACAGACTAAAA 59.699 40.000 0.00 0.00 0.00 1.52
70 71 6.183360 GGGTGGTTTTGATGACAGACTAAAAA 60.183 38.462 0.00 0.00 0.00 1.94
71 72 7.433680 GGTGGTTTTGATGACAGACTAAAAAT 58.566 34.615 0.00 0.00 0.00 1.82
72 73 7.926018 GGTGGTTTTGATGACAGACTAAAAATT 59.074 33.333 0.00 0.00 0.00 1.82
73 74 9.313118 GTGGTTTTGATGACAGACTAAAAATTT 57.687 29.630 0.00 0.00 0.00 1.82
112 113 6.316390 ACAAAGAGTGTTTTCTCACTTACAGG 59.684 38.462 0.98 0.00 46.81 4.00
114 115 5.360591 AGAGTGTTTTCTCACTTACAGGTG 58.639 41.667 0.98 0.00 46.81 4.00
116 117 3.003378 GTGTTTTCTCACTTACAGGTGGC 59.997 47.826 0.00 0.00 37.75 5.01
117 118 2.163818 TTTCTCACTTACAGGTGGCG 57.836 50.000 0.00 0.00 37.75 5.69
118 119 0.320374 TTCTCACTTACAGGTGGCGG 59.680 55.000 0.00 0.00 37.75 6.13
119 120 1.079127 CTCACTTACAGGTGGCGGG 60.079 63.158 0.00 0.00 37.75 6.13
120 121 2.046314 CACTTACAGGTGGCGGGG 60.046 66.667 0.00 0.00 33.95 5.73
121 122 2.528378 ACTTACAGGTGGCGGGGT 60.528 61.111 0.00 0.00 0.00 4.95
122 123 2.046314 CTTACAGGTGGCGGGGTG 60.046 66.667 0.00 0.00 0.00 4.61
130 131 4.629958 TGGCGGGGTGGGCAATTT 62.630 61.111 0.00 0.00 39.78 1.82
131 132 2.363147 GGCGGGGTGGGCAATTTA 60.363 61.111 0.00 0.00 0.00 1.40
132 133 1.760480 GGCGGGGTGGGCAATTTAT 60.760 57.895 0.00 0.00 0.00 1.40
133 134 1.334384 GGCGGGGTGGGCAATTTATT 61.334 55.000 0.00 0.00 0.00 1.40
149 150 7.515957 CAATTTATTGCAACTTTAGAGGCAG 57.484 36.000 0.00 0.00 37.59 4.85
150 151 6.840780 ATTTATTGCAACTTTAGAGGCAGT 57.159 33.333 0.00 0.00 37.59 4.40
151 152 6.648879 TTTATTGCAACTTTAGAGGCAGTT 57.351 33.333 0.00 0.00 37.59 3.16
152 153 6.648879 TTATTGCAACTTTAGAGGCAGTTT 57.351 33.333 0.00 0.00 37.59 2.66
153 154 4.568152 TTGCAACTTTAGAGGCAGTTTC 57.432 40.909 0.00 0.00 37.59 2.78
154 155 2.548057 TGCAACTTTAGAGGCAGTTTCG 59.452 45.455 0.00 0.00 30.48 3.46
155 156 2.806244 GCAACTTTAGAGGCAGTTTCGA 59.194 45.455 0.00 0.00 30.48 3.71
156 157 3.437049 GCAACTTTAGAGGCAGTTTCGAT 59.563 43.478 0.00 0.00 30.48 3.59
157 158 4.670221 GCAACTTTAGAGGCAGTTTCGATG 60.670 45.833 0.00 0.00 30.48 3.84
159 160 4.246458 ACTTTAGAGGCAGTTTCGATGAC 58.754 43.478 0.00 0.00 0.00 3.06
160 161 3.953712 TTAGAGGCAGTTTCGATGACA 57.046 42.857 0.00 0.00 0.00 3.58
161 162 2.376808 AGAGGCAGTTTCGATGACAG 57.623 50.000 0.00 0.00 0.00 3.51
162 163 1.895798 AGAGGCAGTTTCGATGACAGA 59.104 47.619 0.00 0.00 0.00 3.41
163 164 1.996191 GAGGCAGTTTCGATGACAGAC 59.004 52.381 0.00 0.00 0.00 3.51
164 165 1.344438 AGGCAGTTTCGATGACAGACA 59.656 47.619 0.00 0.00 0.00 3.41
167 168 3.003275 GGCAGTTTCGATGACAGACAAAA 59.997 43.478 0.00 0.00 0.00 2.44
221 222 5.913137 TTTTTACTTATGGATGGCAGGTG 57.087 39.130 0.00 0.00 0.00 4.00
222 223 3.576078 TTACTTATGGATGGCAGGTGG 57.424 47.619 0.00 0.00 0.00 4.61
223 224 1.595311 ACTTATGGATGGCAGGTGGA 58.405 50.000 0.00 0.00 0.00 4.02
225 226 3.326521 ACTTATGGATGGCAGGTGGATA 58.673 45.455 0.00 0.00 0.00 2.59
226 227 3.721575 ACTTATGGATGGCAGGTGGATAA 59.278 43.478 0.00 0.00 0.00 1.75
228 229 3.909427 ATGGATGGCAGGTGGATAATT 57.091 42.857 0.00 0.00 0.00 1.40
229 230 3.686227 TGGATGGCAGGTGGATAATTT 57.314 42.857 0.00 0.00 0.00 1.82
230 231 4.805140 TGGATGGCAGGTGGATAATTTA 57.195 40.909 0.00 0.00 0.00 1.40
231 232 4.469657 TGGATGGCAGGTGGATAATTTAC 58.530 43.478 0.00 0.00 0.00 2.01
233 234 5.140454 GGATGGCAGGTGGATAATTTACTT 58.860 41.667 0.00 0.00 0.00 2.24
234 235 5.241728 GGATGGCAGGTGGATAATTTACTTC 59.758 44.000 0.00 0.00 0.00 3.01
235 236 5.186256 TGGCAGGTGGATAATTTACTTCA 57.814 39.130 0.00 0.00 0.00 3.02
238 239 5.652452 GGCAGGTGGATAATTTACTTCAACT 59.348 40.000 0.00 0.00 0.00 3.16
239 240 6.152831 GGCAGGTGGATAATTTACTTCAACTT 59.847 38.462 0.00 0.00 0.00 2.66
240 241 7.309805 GGCAGGTGGATAATTTACTTCAACTTT 60.310 37.037 0.00 0.00 0.00 2.66
241 242 8.736244 GCAGGTGGATAATTTACTTCAACTTTA 58.264 33.333 0.00 0.00 0.00 1.85
256 257 8.630037 ACTTCAACTTTATGGACAACTTTTAGG 58.370 33.333 0.00 0.00 0.00 2.69
257 258 7.519032 TCAACTTTATGGACAACTTTTAGGG 57.481 36.000 0.00 0.00 0.00 3.53
258 259 7.064229 TCAACTTTATGGACAACTTTTAGGGT 58.936 34.615 0.00 0.00 0.00 4.34
259 260 8.219178 TCAACTTTATGGACAACTTTTAGGGTA 58.781 33.333 0.00 0.00 0.00 3.69
260 261 8.512138 CAACTTTATGGACAACTTTTAGGGTAG 58.488 37.037 0.00 0.00 0.00 3.18
261 262 7.981142 ACTTTATGGACAACTTTTAGGGTAGA 58.019 34.615 0.00 0.00 0.00 2.59
263 264 8.801882 TTTATGGACAACTTTTAGGGTAGATG 57.198 34.615 0.00 0.00 0.00 2.90
264 265 6.636454 ATGGACAACTTTTAGGGTAGATGA 57.364 37.500 0.00 0.00 0.00 2.92
265 266 6.442541 TGGACAACTTTTAGGGTAGATGAA 57.557 37.500 0.00 0.00 0.00 2.57
266 267 7.027874 TGGACAACTTTTAGGGTAGATGAAT 57.972 36.000 0.00 0.00 0.00 2.57
268 269 8.265055 TGGACAACTTTTAGGGTAGATGAATAG 58.735 37.037 0.00 0.00 0.00 1.73
270 271 9.315525 GACAACTTTTAGGGTAGATGAATAGAC 57.684 37.037 0.00 0.00 0.00 2.59
271 272 8.265764 ACAACTTTTAGGGTAGATGAATAGACC 58.734 37.037 0.00 0.00 0.00 3.85
272 273 7.052142 ACTTTTAGGGTAGATGAATAGACCG 57.948 40.000 0.00 0.00 32.38 4.79
274 275 7.343833 ACTTTTAGGGTAGATGAATAGACCGAA 59.656 37.037 0.00 0.00 32.38 4.30
275 276 7.664552 TTTAGGGTAGATGAATAGACCGAAA 57.335 36.000 0.00 0.00 32.38 3.46
277 278 6.555463 AGGGTAGATGAATAGACCGAAAAA 57.445 37.500 0.00 0.00 32.38 1.94
278 279 7.138054 AGGGTAGATGAATAGACCGAAAAAT 57.862 36.000 0.00 0.00 32.38 1.82
279 280 6.992715 AGGGTAGATGAATAGACCGAAAAATG 59.007 38.462 0.00 0.00 32.38 2.32
281 282 6.990349 GGTAGATGAATAGACCGAAAAATGGA 59.010 38.462 0.00 0.00 0.00 3.41
282 283 7.171678 GGTAGATGAATAGACCGAAAAATGGAG 59.828 40.741 0.00 0.00 0.00 3.86
283 284 6.889198 AGATGAATAGACCGAAAAATGGAGA 58.111 36.000 0.00 0.00 0.00 3.71
284 285 7.338710 AGATGAATAGACCGAAAAATGGAGAA 58.661 34.615 0.00 0.00 0.00 2.87
285 286 7.829211 AGATGAATAGACCGAAAAATGGAGAAA 59.171 33.333 0.00 0.00 0.00 2.52
286 287 7.141100 TGAATAGACCGAAAAATGGAGAAAC 57.859 36.000 0.00 0.00 0.00 2.78
287 288 6.712998 TGAATAGACCGAAAAATGGAGAAACA 59.287 34.615 0.00 0.00 0.00 2.83
288 289 4.830826 AGACCGAAAAATGGAGAAACAC 57.169 40.909 0.00 0.00 0.00 3.32
290 291 4.036380 AGACCGAAAAATGGAGAAACACAC 59.964 41.667 0.00 0.00 0.00 3.82
291 292 3.067601 ACCGAAAAATGGAGAAACACACC 59.932 43.478 0.00 0.00 0.00 4.16
292 293 3.317993 CCGAAAAATGGAGAAACACACCT 59.682 43.478 0.00 0.00 0.00 4.00
293 294 4.537015 CGAAAAATGGAGAAACACACCTC 58.463 43.478 0.00 0.00 0.00 3.85
295 296 4.918810 AAAATGGAGAAACACACCTCAC 57.081 40.909 0.00 0.00 0.00 3.51
296 297 3.864789 AATGGAGAAACACACCTCACT 57.135 42.857 0.00 0.00 0.00 3.41
298 299 3.644966 TGGAGAAACACACCTCACTTT 57.355 42.857 0.00 0.00 0.00 2.66
299 300 4.764050 TGGAGAAACACACCTCACTTTA 57.236 40.909 0.00 0.00 0.00 1.85
301 302 5.690865 TGGAGAAACACACCTCACTTTATT 58.309 37.500 0.00 0.00 0.00 1.40
305 306 7.390718 GGAGAAACACACCTCACTTTATTGTAT 59.609 37.037 0.00 0.00 0.00 2.29
345 346 7.257790 AGATATGGGATAAATTGTCATCGGA 57.742 36.000 0.00 0.00 0.00 4.55
347 348 5.567037 ATGGGATAAATTGTCATCGGAGA 57.433 39.130 0.00 0.00 45.75 3.71
348 349 5.366482 TGGGATAAATTGTCATCGGAGAA 57.634 39.130 0.00 0.00 43.58 2.87
350 351 7.073457 TGGGATAAATTGTCATCGGAGAATA 57.927 36.000 0.00 0.00 43.58 1.75
351 352 7.513856 TGGGATAAATTGTCATCGGAGAATAA 58.486 34.615 0.00 0.00 43.58 1.40
352 353 7.996066 TGGGATAAATTGTCATCGGAGAATAAA 59.004 33.333 0.00 0.00 43.58 1.40
353 354 8.290325 GGGATAAATTGTCATCGGAGAATAAAC 58.710 37.037 0.00 0.00 43.58 2.01
354 355 8.290325 GGATAAATTGTCATCGGAGAATAAACC 58.710 37.037 0.00 0.00 43.58 3.27
355 356 8.746052 ATAAATTGTCATCGGAGAATAAACCA 57.254 30.769 0.00 0.00 43.58 3.67
357 358 7.645058 AATTGTCATCGGAGAATAAACCATT 57.355 32.000 0.00 0.00 43.58 3.16
358 359 6.677781 TTGTCATCGGAGAATAAACCATTC 57.322 37.500 0.00 0.00 43.58 2.67
359 360 5.739959 TGTCATCGGAGAATAAACCATTCA 58.260 37.500 0.31 0.00 44.81 2.57
361 362 7.505258 TGTCATCGGAGAATAAACCATTCATA 58.495 34.615 0.31 0.00 44.81 2.15
362 363 7.990314 TGTCATCGGAGAATAAACCATTCATAA 59.010 33.333 0.31 0.00 44.81 1.90
363 364 8.836413 GTCATCGGAGAATAAACCATTCATAAA 58.164 33.333 0.31 0.00 44.81 1.40
364 365 9.402320 TCATCGGAGAATAAACCATTCATAAAA 57.598 29.630 0.31 0.00 44.81 1.52
366 367 8.568676 TCGGAGAATAAACCATTCATAAAACA 57.431 30.769 0.31 0.00 44.81 2.83
367 368 9.015367 TCGGAGAATAAACCATTCATAAAACAA 57.985 29.630 0.31 0.00 44.81 2.83
368 369 9.801873 CGGAGAATAAACCATTCATAAAACAAT 57.198 29.630 0.31 0.00 44.81 2.71
379 380 8.583810 CATTCATAAAACAATAGAATGGCCTG 57.416 34.615 3.32 0.00 40.94 4.85
380 381 7.953005 TTCATAAAACAATAGAATGGCCTGA 57.047 32.000 3.32 0.00 0.00 3.86
381 382 7.953005 TCATAAAACAATAGAATGGCCTGAA 57.047 32.000 3.32 0.00 0.00 3.02
384 385 6.670695 AAAACAATAGAATGGCCTGAAAGT 57.329 33.333 3.32 0.00 0.00 2.66
385 386 6.670695 AAACAATAGAATGGCCTGAAAGTT 57.329 33.333 3.32 0.00 0.00 2.66
387 388 4.082026 ACAATAGAATGGCCTGAAAGTTGC 60.082 41.667 3.32 0.00 0.00 4.17
388 389 0.883833 AGAATGGCCTGAAAGTTGCG 59.116 50.000 3.32 0.00 0.00 4.85
389 390 0.733909 GAATGGCCTGAAAGTTGCGC 60.734 55.000 3.32 0.00 0.00 6.09
390 391 1.181098 AATGGCCTGAAAGTTGCGCT 61.181 50.000 9.73 0.00 0.00 5.92
391 392 0.322456 ATGGCCTGAAAGTTGCGCTA 60.322 50.000 9.73 0.00 0.00 4.26
392 393 0.536233 TGGCCTGAAAGTTGCGCTAA 60.536 50.000 9.73 0.00 0.00 3.09
393 394 0.596082 GGCCTGAAAGTTGCGCTAAA 59.404 50.000 9.73 0.00 0.00 1.85
394 395 1.202348 GGCCTGAAAGTTGCGCTAAAT 59.798 47.619 9.73 0.00 0.00 1.40
396 397 3.317150 GCCTGAAAGTTGCGCTAAATTT 58.683 40.909 9.73 12.87 39.08 1.82
397 398 3.740832 GCCTGAAAGTTGCGCTAAATTTT 59.259 39.130 9.73 4.71 36.76 1.82
400 401 5.076911 TGAAAGTTGCGCTAAATTTTTGC 57.923 34.783 9.73 5.62 36.76 3.68
401 402 4.808364 TGAAAGTTGCGCTAAATTTTTGCT 59.192 33.333 9.73 0.00 36.76 3.91
403 404 3.976169 AGTTGCGCTAAATTTTTGCTCA 58.024 36.364 9.73 8.64 0.00 4.26
404 405 4.559153 AGTTGCGCTAAATTTTTGCTCAT 58.441 34.783 9.73 0.00 0.00 2.90
405 406 5.708948 AGTTGCGCTAAATTTTTGCTCATA 58.291 33.333 9.73 1.89 0.00 2.15
409 410 5.005586 TGCGCTAAATTTTTGCTCATATTGC 59.994 36.000 9.73 7.78 0.00 3.56
410 411 5.005586 GCGCTAAATTTTTGCTCATATTGCA 59.994 36.000 12.51 0.00 38.80 4.08
411 412 6.405216 CGCTAAATTTTTGCTCATATTGCAC 58.595 36.000 12.51 0.00 40.40 4.57
412 413 6.254157 CGCTAAATTTTTGCTCATATTGCACT 59.746 34.615 12.51 0.00 40.40 4.40
413 414 7.201461 CGCTAAATTTTTGCTCATATTGCACTT 60.201 33.333 12.51 0.00 40.40 3.16
414 415 8.445493 GCTAAATTTTTGCTCATATTGCACTTT 58.555 29.630 8.09 2.51 40.40 2.66
442 443 4.185467 ACAAATGTGTTGTGCAACTCAA 57.815 36.364 19.17 5.87 44.55 3.02
443 444 4.175516 ACAAATGTGTTGTGCAACTCAAG 58.824 39.130 19.17 15.07 44.55 3.02
445 446 1.832883 TGTGTTGTGCAACTCAAGGT 58.167 45.000 14.79 0.00 40.48 3.50
446 447 1.472082 TGTGTTGTGCAACTCAAGGTG 59.528 47.619 14.79 0.00 40.48 4.00
447 448 0.455410 TGTTGTGCAACTCAAGGTGC 59.545 50.000 13.11 13.11 41.67 5.01
448 449 0.249031 GTTGTGCAACTCAAGGTGCC 60.249 55.000 16.96 9.14 38.25 5.01
449 450 0.395586 TTGTGCAACTCAAGGTGCCT 60.396 50.000 16.96 0.00 38.04 4.75
450 451 1.102809 TGTGCAACTCAAGGTGCCTG 61.103 55.000 16.96 0.00 38.04 4.85
452 453 0.819259 TGCAACTCAAGGTGCCTGAC 60.819 55.000 16.96 0.00 0.00 3.51
453 454 0.536006 GCAACTCAAGGTGCCTGACT 60.536 55.000 8.90 0.00 0.00 3.41
456 457 0.536006 ACTCAAGGTGCCTGACTTGC 60.536 55.000 0.00 0.00 42.82 4.01
457 458 0.250640 CTCAAGGTGCCTGACTTGCT 60.251 55.000 0.00 0.00 42.82 3.91
459 460 0.820891 CAAGGTGCCTGACTTGCTGT 60.821 55.000 0.00 0.00 37.82 4.40
462 463 1.895707 GTGCCTGACTTGCTGTGCT 60.896 57.895 0.00 0.00 0.00 4.40
464 465 1.302351 GCCTGACTTGCTGTGCTCT 60.302 57.895 0.00 0.00 0.00 4.09
467 468 0.237761 CTGACTTGCTGTGCTCTTGC 59.762 55.000 0.00 0.00 40.20 4.01
480 481 3.151554 TGCTCTTGCATTCAATGTCTGT 58.848 40.909 0.00 0.00 45.31 3.41
481 482 3.189910 TGCTCTTGCATTCAATGTCTGTC 59.810 43.478 0.00 0.00 45.31 3.51
482 483 3.427233 GCTCTTGCATTCAATGTCTGTCC 60.427 47.826 0.00 0.00 39.41 4.02
483 484 4.008330 CTCTTGCATTCAATGTCTGTCCT 58.992 43.478 0.00 0.00 0.00 3.85
484 485 3.754850 TCTTGCATTCAATGTCTGTCCTG 59.245 43.478 0.00 0.00 0.00 3.86
485 486 3.144657 TGCATTCAATGTCTGTCCTGT 57.855 42.857 0.00 0.00 0.00 4.00
486 487 2.815503 TGCATTCAATGTCTGTCCTGTG 59.184 45.455 0.00 0.00 0.00 3.66
487 488 2.163010 GCATTCAATGTCTGTCCTGTGG 59.837 50.000 0.00 0.00 0.00 4.17
488 489 3.415212 CATTCAATGTCTGTCCTGTGGT 58.585 45.455 0.00 0.00 0.00 4.16
489 490 3.576078 TTCAATGTCTGTCCTGTGGTT 57.424 42.857 0.00 0.00 0.00 3.67
490 491 3.126001 TCAATGTCTGTCCTGTGGTTC 57.874 47.619 0.00 0.00 0.00 3.62
491 492 2.705658 TCAATGTCTGTCCTGTGGTTCT 59.294 45.455 0.00 0.00 0.00 3.01
492 493 3.136443 TCAATGTCTGTCCTGTGGTTCTT 59.864 43.478 0.00 0.00 0.00 2.52
493 494 3.864789 ATGTCTGTCCTGTGGTTCTTT 57.135 42.857 0.00 0.00 0.00 2.52
494 495 2.917933 TGTCTGTCCTGTGGTTCTTTG 58.082 47.619 0.00 0.00 0.00 2.77
529 530 7.755822 AGATTACATTACTCTGTTTCTGTCGTC 59.244 37.037 0.00 0.00 0.00 4.20
531 532 2.983402 TACTCTGTTTCTGTCGTCGG 57.017 50.000 0.00 0.00 0.00 4.79
532 533 1.315690 ACTCTGTTTCTGTCGTCGGA 58.684 50.000 0.00 0.00 0.00 4.55
534 535 2.287668 ACTCTGTTTCTGTCGTCGGAAG 60.288 50.000 4.17 0.00 39.67 3.46
535 536 1.951602 TCTGTTTCTGTCGTCGGAAGA 59.048 47.619 4.17 0.00 39.67 2.87
539 540 2.363788 TTCTGTCGTCGGAAGATTGG 57.636 50.000 0.00 0.00 45.19 3.16
540 541 1.541379 TCTGTCGTCGGAAGATTGGA 58.459 50.000 0.00 0.00 45.19 3.53
541 542 1.472878 TCTGTCGTCGGAAGATTGGAG 59.527 52.381 0.00 0.00 45.19 3.86
542 543 0.108804 TGTCGTCGGAAGATTGGAGC 60.109 55.000 0.00 0.00 45.19 4.70
543 544 0.806492 GTCGTCGGAAGATTGGAGCC 60.806 60.000 0.00 0.00 45.19 4.70
544 545 1.218047 CGTCGGAAGATTGGAGCCA 59.782 57.895 0.00 0.00 45.19 4.75
547 548 0.250234 TCGGAAGATTGGAGCCACAG 59.750 55.000 0.00 0.00 33.31 3.66
550 551 1.457346 GAAGATTGGAGCCACAGTGG 58.543 55.000 16.16 16.16 41.55 4.00
551 552 0.038744 AAGATTGGAGCCACAGTGGG 59.961 55.000 21.77 3.21 38.19 4.61
553 554 1.852157 ATTGGAGCCACAGTGGGGA 60.852 57.895 18.10 0.00 38.19 4.81
555 556 2.930562 GGAGCCACAGTGGGGAGT 60.931 66.667 18.10 0.00 38.19 3.85
556 557 2.348998 GAGCCACAGTGGGGAGTG 59.651 66.667 18.10 0.00 38.19 3.51
558 559 4.351054 GCCACAGTGGGGAGTGGG 62.351 72.222 18.10 0.00 38.19 4.61
559 560 4.351054 CCACAGTGGGGAGTGGGC 62.351 72.222 5.05 0.00 32.67 5.36
560 561 3.252284 CACAGTGGGGAGTGGGCT 61.252 66.667 0.00 0.00 0.00 5.19
561 562 2.450502 ACAGTGGGGAGTGGGCTT 60.451 61.111 0.00 0.00 0.00 4.35
562 563 2.034687 CAGTGGGGAGTGGGCTTG 59.965 66.667 0.00 0.00 0.00 4.01
563 564 2.450502 AGTGGGGAGTGGGCTTGT 60.451 61.111 0.00 0.00 0.00 3.16
602 603 1.501337 CTGAGCTGCTGTTGTTGCGA 61.501 55.000 7.01 0.00 0.00 5.10
651 652 4.577834 TTTTAACCAGCAAAGGCACTAC 57.422 40.909 0.00 0.00 44.61 2.73
653 654 2.292828 AACCAGCAAAGGCACTACAT 57.707 45.000 0.00 0.00 44.61 2.29
654 655 1.538047 ACCAGCAAAGGCACTACATG 58.462 50.000 0.00 0.00 44.61 3.21
656 657 1.888512 CCAGCAAAGGCACTACATGTT 59.111 47.619 2.30 0.00 44.61 2.71
657 658 2.297033 CCAGCAAAGGCACTACATGTTT 59.703 45.455 2.30 0.00 44.61 2.83
659 660 2.558359 AGCAAAGGCACTACATGTTTCC 59.442 45.455 2.30 0.25 44.61 3.13
660 661 2.295909 GCAAAGGCACTACATGTTTCCA 59.704 45.455 2.30 0.00 38.49 3.53
662 663 3.508845 AAGGCACTACATGTTTCCACT 57.491 42.857 2.30 0.00 38.49 4.00
663 664 2.783135 AGGCACTACATGTTTCCACTG 58.217 47.619 2.30 0.00 36.02 3.66
664 665 1.200020 GGCACTACATGTTTCCACTGC 59.800 52.381 2.30 2.31 0.00 4.40
665 666 2.154462 GCACTACATGTTTCCACTGCT 58.846 47.619 2.30 0.00 0.00 4.24
667 668 3.004734 GCACTACATGTTTCCACTGCTTT 59.995 43.478 2.30 0.00 0.00 3.51
668 669 4.787598 CACTACATGTTTCCACTGCTTTC 58.212 43.478 2.30 0.00 0.00 2.62
670 671 3.996150 ACATGTTTCCACTGCTTTCTG 57.004 42.857 0.00 0.00 0.00 3.02
671 672 2.035066 ACATGTTTCCACTGCTTTCTGC 59.965 45.455 0.00 0.00 43.25 4.26
673 674 3.207265 TGTTTCCACTGCTTTCTGCTA 57.793 42.857 0.00 0.00 43.37 3.49
677 678 5.157067 GTTTCCACTGCTTTCTGCTAAATC 58.843 41.667 0.00 0.00 43.37 2.17
678 679 4.019792 TCCACTGCTTTCTGCTAAATCA 57.980 40.909 0.00 0.00 43.37 2.57
679 680 4.397420 TCCACTGCTTTCTGCTAAATCAA 58.603 39.130 0.00 0.00 43.37 2.57
680 681 5.012239 TCCACTGCTTTCTGCTAAATCAAT 58.988 37.500 0.00 0.00 43.37 2.57
681 682 5.100259 CCACTGCTTTCTGCTAAATCAATG 58.900 41.667 0.00 0.00 43.37 2.82
682 683 5.106038 CCACTGCTTTCTGCTAAATCAATGA 60.106 40.000 0.00 0.00 43.37 2.57
683 684 6.384224 CACTGCTTTCTGCTAAATCAATGAA 58.616 36.000 0.00 0.00 43.37 2.57
684 685 6.527023 CACTGCTTTCTGCTAAATCAATGAAG 59.473 38.462 0.00 0.00 43.37 3.02
685 686 5.404946 TGCTTTCTGCTAAATCAATGAAGC 58.595 37.500 0.00 0.00 43.37 3.86
687 688 4.621068 TTCTGCTAAATCAATGAAGCCG 57.379 40.909 3.30 0.00 33.99 5.52
688 689 2.945008 TCTGCTAAATCAATGAAGCCGG 59.055 45.455 0.00 0.00 33.99 6.13
689 690 2.684881 CTGCTAAATCAATGAAGCCGGT 59.315 45.455 1.90 0.00 33.99 5.28
690 691 2.423185 TGCTAAATCAATGAAGCCGGTG 59.577 45.455 1.90 0.00 33.99 4.94
693 694 4.202050 GCTAAATCAATGAAGCCGGTGATT 60.202 41.667 1.90 6.61 41.34 2.57
694 695 4.806640 AAATCAATGAAGCCGGTGATTT 57.193 36.364 17.96 17.96 42.83 2.17
695 696 3.788333 ATCAATGAAGCCGGTGATTTG 57.212 42.857 1.90 1.61 0.00 2.32
696 697 1.202114 TCAATGAAGCCGGTGATTTGC 59.798 47.619 1.90 0.00 0.00 3.68
697 698 0.532115 AATGAAGCCGGTGATTTGCC 59.468 50.000 1.90 0.00 0.00 4.52
706 707 0.526211 GGTGATTTGCCGGGTCTTTC 59.474 55.000 2.18 0.00 0.00 2.62
707 708 1.243902 GTGATTTGCCGGGTCTTTCA 58.756 50.000 2.18 0.00 0.00 2.69
711 712 3.133003 TGATTTGCCGGGTCTTTCAAAAA 59.867 39.130 2.18 0.00 32.97 1.94
746 747 4.457834 ACTAAGCTAGTGTTGGCTAGTG 57.542 45.455 0.00 0.00 40.65 2.74
748 749 4.712337 ACTAAGCTAGTGTTGGCTAGTGAT 59.288 41.667 0.00 0.00 40.65 3.06
749 750 4.559862 AAGCTAGTGTTGGCTAGTGATT 57.440 40.909 0.00 0.00 40.65 2.57
750 751 3.866651 AGCTAGTGTTGGCTAGTGATTG 58.133 45.455 0.00 0.00 39.63 2.67
751 752 3.261897 AGCTAGTGTTGGCTAGTGATTGT 59.738 43.478 0.00 0.00 39.63 2.71
783 967 2.559440 GTGTCCTCAGAAGATGGATGC 58.441 52.381 0.00 0.00 32.03 3.91
841 1025 2.671177 CGTTGCTTCCACTCGCCAG 61.671 63.158 0.00 0.00 0.00 4.85
842 1026 2.669569 TTGCTTCCACTCGCCAGC 60.670 61.111 0.00 0.00 0.00 4.85
843 1027 3.474486 TTGCTTCCACTCGCCAGCA 62.474 57.895 0.00 0.00 40.53 4.41
845 1029 2.031012 CTTCCACTCGCCAGCACA 59.969 61.111 0.00 0.00 0.00 4.57
847 1031 1.572085 CTTCCACTCGCCAGCACAAG 61.572 60.000 0.00 0.00 0.00 3.16
849 1033 2.320587 CCACTCGCCAGCACAAGAC 61.321 63.158 0.00 0.00 0.00 3.01
851 1035 1.595382 ACTCGCCAGCACAAGACAC 60.595 57.895 0.00 0.00 0.00 3.67
853 1037 3.357079 CGCCAGCACAAGACACCC 61.357 66.667 0.00 0.00 0.00 4.61
856 1040 1.799258 GCCAGCACAAGACACCCAAG 61.799 60.000 0.00 0.00 0.00 3.61
857 1041 1.656441 CAGCACAAGACACCCAAGC 59.344 57.895 0.00 0.00 0.00 4.01
861 1045 1.453015 ACAAGACACCCAAGCGCAA 60.453 52.632 11.47 0.00 0.00 4.85
864 1048 1.039856 AAGACACCCAAGCGCAAAAT 58.960 45.000 11.47 0.00 0.00 1.82
865 1049 0.598065 AGACACCCAAGCGCAAAATC 59.402 50.000 11.47 0.00 0.00 2.17
866 1050 0.388520 GACACCCAAGCGCAAAATCC 60.389 55.000 11.47 0.00 0.00 3.01
880 1064 3.628646 AATCCAGTCCAGCCACCGC 62.629 63.158 0.00 0.00 0.00 5.68
884 1068 4.320456 AGTCCAGCCACCGCACAG 62.320 66.667 0.00 0.00 37.52 3.66
937 1121 0.550914 TGCTTCCACCCTTTCTGTGT 59.449 50.000 0.00 0.00 31.71 3.72
951 1135 7.162082 CCCTTTCTGTGTCTATATAATCCACC 58.838 42.308 0.00 0.00 0.00 4.61
955 1139 5.780282 TCTGTGTCTATATAATCCACCCCAG 59.220 44.000 0.00 0.00 0.00 4.45
1062 1292 3.003173 CTCCTCCTGCCGTTCCCA 61.003 66.667 0.00 0.00 0.00 4.37
1145 1375 4.742201 CCCCACGCTCGTCACCAG 62.742 72.222 0.00 0.00 0.00 4.00
1248 1484 2.488820 GCCTCGGACTACACGGAC 59.511 66.667 0.00 0.00 0.00 4.79
1495 2825 3.842923 CGGATGGGCTCGAGCTGT 61.843 66.667 34.46 21.18 41.70 4.40
1580 2910 0.884704 GAGTCGCAGCCTTTGTTCCA 60.885 55.000 0.00 0.00 0.00 3.53
1695 3033 3.639538 TCGTCTGCTTTACTCACTCAAC 58.360 45.455 0.00 0.00 0.00 3.18
1762 3173 8.627208 ACATCTTTACACATTTTGACATCTCT 57.373 30.769 0.00 0.00 0.00 3.10
1763 3174 8.509690 ACATCTTTACACATTTTGACATCTCTG 58.490 33.333 0.00 0.00 0.00 3.35
1764 3175 8.509690 CATCTTTACACATTTTGACATCTCTGT 58.490 33.333 0.00 0.00 38.67 3.41
1765 3176 8.450578 TCTTTACACATTTTGACATCTCTGTT 57.549 30.769 0.00 0.00 35.14 3.16
1767 3178 9.173939 CTTTACACATTTTGACATCTCTGTTTC 57.826 33.333 0.00 0.00 35.14 2.78
1768 3179 6.949352 ACACATTTTGACATCTCTGTTTCT 57.051 33.333 0.00 0.00 35.14 2.52
1770 3181 8.450578 ACACATTTTGACATCTCTGTTTCTAA 57.549 30.769 0.00 0.00 35.14 2.10
1772 3183 9.903682 CACATTTTGACATCTCTGTTTCTAAAT 57.096 29.630 0.00 0.00 35.14 1.40
1777 3188 9.996554 TTTGACATCTCTGTTTCTAAATACAGA 57.003 29.630 0.00 0.00 46.19 3.41
1807 3218 6.435428 AGCCTTTTTATATATTTCAACGCCG 58.565 36.000 0.00 0.00 0.00 6.46
1808 3219 6.261381 AGCCTTTTTATATATTTCAACGCCGA 59.739 34.615 0.00 0.00 0.00 5.54
1809 3220 6.913673 GCCTTTTTATATATTTCAACGCCGAA 59.086 34.615 0.00 0.00 0.00 4.30
1810 3221 7.593644 GCCTTTTTATATATTTCAACGCCGAAT 59.406 33.333 0.00 0.00 0.00 3.34
1861 3272 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
1862 3273 7.983307 AGAGTGTAGATTCATTCATTTTGCTC 58.017 34.615 0.00 0.00 0.00 4.26
1863 3274 7.066766 AGAGTGTAGATTCATTCATTTTGCTCC 59.933 37.037 0.00 0.00 0.00 4.70
1864 3275 6.888632 AGTGTAGATTCATTCATTTTGCTCCT 59.111 34.615 0.00 0.00 0.00 3.69
1865 3276 7.395489 AGTGTAGATTCATTCATTTTGCTCCTT 59.605 33.333 0.00 0.00 0.00 3.36
1866 3277 8.677300 GTGTAGATTCATTCATTTTGCTCCTTA 58.323 33.333 0.00 0.00 0.00 2.69
1867 3278 9.412460 TGTAGATTCATTCATTTTGCTCCTTAT 57.588 29.630 0.00 0.00 0.00 1.73
1874 3285 9.507329 TCATTCATTTTGCTCCTTATATAGTCC 57.493 33.333 0.00 0.00 0.00 3.85
1875 3286 7.962964 TTCATTTTGCTCCTTATATAGTCCG 57.037 36.000 0.00 0.00 0.00 4.79
1877 3288 8.185506 TCATTTTGCTCCTTATATAGTCCGTA 57.814 34.615 0.00 0.00 0.00 4.02
1879 3290 9.088512 CATTTTGCTCCTTATATAGTCCGTATC 57.911 37.037 0.00 0.00 0.00 2.24
1880 3291 6.432607 TTGCTCCTTATATAGTCCGTATCG 57.567 41.667 0.00 0.00 0.00 2.92
1882 3293 6.175471 TGCTCCTTATATAGTCCGTATCGAA 58.825 40.000 0.00 0.00 0.00 3.71
1883 3294 6.656270 TGCTCCTTATATAGTCCGTATCGAAA 59.344 38.462 0.00 0.00 0.00 3.46
1885 3296 7.856894 GCTCCTTATATAGTCCGTATCGAAATC 59.143 40.741 0.00 0.00 0.00 2.17
1887 3298 9.107177 TCCTTATATAGTCCGTATCGAAATCTC 57.893 37.037 0.00 0.00 0.00 2.75
1895 3306 5.690857 GTCCGTATCGAAATCTCTAAAAGGG 59.309 44.000 0.00 0.00 0.00 3.95
1897 3308 5.290386 CGTATCGAAATCTCTAAAAGGGCT 58.710 41.667 0.00 0.00 0.00 5.19
1899 3310 6.258068 CGTATCGAAATCTCTAAAAGGGCTTT 59.742 38.462 0.00 0.00 0.00 3.51
1901 3312 9.106070 GTATCGAAATCTCTAAAAGGGCTTTTA 57.894 33.333 0.00 0.00 42.22 1.52
1903 3314 8.575649 TCGAAATCTCTAAAAGGGCTTTTATT 57.424 30.769 0.00 0.00 42.17 1.40
1915 3326 9.671279 AAAAGGGCTTTTATTTAAGAATGGATG 57.329 29.630 0.00 0.00 40.61 3.51
1916 3327 6.820335 AGGGCTTTTATTTAAGAATGGATGC 58.180 36.000 0.00 0.00 0.00 3.91
1918 3329 6.703165 GGGCTTTTATTTAAGAATGGATGCAG 59.297 38.462 0.00 0.00 0.00 4.41
1921 3374 9.971922 GCTTTTATTTAAGAATGGATGCAGTAT 57.028 29.630 0.00 0.00 0.00 2.12
1999 4536 2.225491 GTGCTTGACATTTTGCCGTCTA 59.775 45.455 0.00 0.00 33.18 2.59
2215 4752 0.387622 TTTCTCCAACTACGACGCGG 60.388 55.000 12.47 0.00 0.00 6.46
2376 4913 1.630878 CCCCAACTTGAGGTTCTAGCT 59.369 52.381 0.00 0.00 35.74 3.32
2397 4938 2.172505 TCACAAGGCCATCGGTATGAAT 59.827 45.455 5.01 0.00 34.84 2.57
2398 4939 2.291465 CACAAGGCCATCGGTATGAATG 59.709 50.000 5.01 0.00 34.84 2.67
2399 4940 2.172505 ACAAGGCCATCGGTATGAATGA 59.827 45.455 5.01 0.00 34.84 2.57
2400 4941 3.181440 ACAAGGCCATCGGTATGAATGAT 60.181 43.478 5.01 0.00 34.84 2.45
2401 4942 4.041567 ACAAGGCCATCGGTATGAATGATA 59.958 41.667 5.01 0.00 34.84 2.15
2402 4943 5.188434 CAAGGCCATCGGTATGAATGATAT 58.812 41.667 5.01 0.00 34.84 1.63
2403 4944 5.028549 AGGCCATCGGTATGAATGATATC 57.971 43.478 5.01 0.00 34.84 1.63
2404 4945 4.471025 AGGCCATCGGTATGAATGATATCA 59.529 41.667 8.10 8.10 34.84 2.15
2405 4946 4.572389 GGCCATCGGTATGAATGATATCAC 59.428 45.833 7.78 0.00 34.84 3.06
2406 4947 5.178061 GCCATCGGTATGAATGATATCACA 58.822 41.667 7.78 2.80 34.84 3.58
2411 4952 7.172654 TCGGTATGAATGATATCACAAAACG 57.827 36.000 7.78 6.98 30.82 3.60
2452 4995 9.878599 TCTCGTTTGAAAATGAATTAGAAGAAC 57.121 29.630 0.00 0.00 33.84 3.01
2628 5183 2.237643 ACCCACCATCGCAAAGTATGTA 59.762 45.455 0.00 0.00 0.00 2.29
2931 5494 9.499479 AAGCATATATGTTTAGAGGAGACAATG 57.501 33.333 12.58 0.00 29.15 2.82
2981 5544 1.001068 TCACCATTTGGAACGACGCTA 59.999 47.619 3.01 0.00 38.94 4.26
2985 5548 3.315749 ACCATTTGGAACGACGCTAAAAA 59.684 39.130 3.01 0.00 38.94 1.94
2989 5553 3.817148 TGGAACGACGCTAAAAATTCC 57.183 42.857 0.00 0.00 36.86 3.01
3111 5683 8.554490 ACTATGTATATGGTTTCTCCTCAGTT 57.446 34.615 0.00 0.00 37.07 3.16
3141 5717 9.203421 CACATGGAAAATGATGGATGATAATTG 57.797 33.333 0.00 0.00 0.00 2.32
3174 5750 3.008049 AGTTCATAAGCCTGAAGTCCGTT 59.992 43.478 0.00 0.00 34.44 4.44
3181 5757 5.864418 AAGCCTGAAGTCCGTTATATACA 57.136 39.130 0.00 0.00 0.00 2.29
3184 5760 6.827727 AGCCTGAAGTCCGTTATATACAAAT 58.172 36.000 0.00 0.00 0.00 2.32
3532 6108 2.367567 GGAGGATAGGTAATCACGCCAA 59.632 50.000 0.00 0.00 36.20 4.52
3538 6114 1.202952 AGGTAATCACGCCAAAACCCA 60.203 47.619 0.00 0.00 0.00 4.51
3546 6122 0.247185 CGCCAAAACCCAGCATGATT 59.753 50.000 0.00 0.00 39.69 2.57
3657 6239 9.906660 CAATGCTTCTAAACACCTTTATAACAA 57.093 29.630 0.00 0.00 0.00 2.83
3725 6307 1.340248 CCGACAGTCCAGTAGTGTTGT 59.660 52.381 0.00 0.00 42.02 3.32
3771 6353 6.504238 AAGCGAGTAGGTTGGTTGGAAACT 62.504 45.833 0.00 0.00 40.69 2.66
3772 6354 8.896539 TAAGCGAGTAGGTTGGTTGGAAACTC 62.897 46.154 0.00 0.00 43.18 3.01
3837 6420 1.069765 CACGGTCTTCCACTGCAGT 59.930 57.895 15.25 15.25 34.19 4.40
3846 6429 1.560505 TCCACTGCAGTAGAGCATCA 58.439 50.000 21.20 0.00 44.68 3.07
3859 6442 2.877975 GCATCAAGCACAGGTCCAT 58.122 52.632 0.00 0.00 44.79 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.545582 CACCTGCCACCCATAAAAGTG 59.454 52.381 0.00 0.00 0.00 3.16
4 5 1.549950 CCACCTGCCACCCATAAAAGT 60.550 52.381 0.00 0.00 0.00 2.66
7 8 1.006813 ATCCACCTGCCACCCATAAA 58.993 50.000 0.00 0.00 0.00 1.40
9 10 1.900254 TTATCCACCTGCCACCCATA 58.100 50.000 0.00 0.00 0.00 2.74
10 11 1.234806 ATTATCCACCTGCCACCCAT 58.765 50.000 0.00 0.00 0.00 4.00
13 14 3.898482 AGTAAATTATCCACCTGCCACC 58.102 45.455 0.00 0.00 0.00 4.61
15 16 5.186256 TGAAGTAAATTATCCACCTGCCA 57.814 39.130 0.00 0.00 0.00 4.92
16 17 4.036852 GCTGAAGTAAATTATCCACCTGCC 59.963 45.833 0.00 0.00 0.00 4.85
17 18 4.884164 AGCTGAAGTAAATTATCCACCTGC 59.116 41.667 0.00 0.00 0.00 4.85
18 19 7.396540 AAAGCTGAAGTAAATTATCCACCTG 57.603 36.000 0.00 0.00 0.00 4.00
19 20 7.775561 CCTAAAGCTGAAGTAAATTATCCACCT 59.224 37.037 0.00 0.00 0.00 4.00
20 21 7.013369 CCCTAAAGCTGAAGTAAATTATCCACC 59.987 40.741 0.00 0.00 0.00 4.61
21 22 7.013369 CCCCTAAAGCTGAAGTAAATTATCCAC 59.987 40.741 0.00 0.00 0.00 4.02
22 23 7.060421 CCCCTAAAGCTGAAGTAAATTATCCA 58.940 38.462 0.00 0.00 0.00 3.41
23 24 7.013369 CACCCCTAAAGCTGAAGTAAATTATCC 59.987 40.741 0.00 0.00 0.00 2.59
24 25 7.013369 CCACCCCTAAAGCTGAAGTAAATTATC 59.987 40.741 0.00 0.00 0.00 1.75
25 26 6.833933 CCACCCCTAAAGCTGAAGTAAATTAT 59.166 38.462 0.00 0.00 0.00 1.28
26 27 6.184789 CCACCCCTAAAGCTGAAGTAAATTA 58.815 40.000 0.00 0.00 0.00 1.40
27 28 5.016831 CCACCCCTAAAGCTGAAGTAAATT 58.983 41.667 0.00 0.00 0.00 1.82
28 29 4.044191 ACCACCCCTAAAGCTGAAGTAAAT 59.956 41.667 0.00 0.00 0.00 1.40
29 30 3.396611 ACCACCCCTAAAGCTGAAGTAAA 59.603 43.478 0.00 0.00 0.00 2.01
30 31 2.983898 ACCACCCCTAAAGCTGAAGTAA 59.016 45.455 0.00 0.00 0.00 2.24
31 32 2.627933 ACCACCCCTAAAGCTGAAGTA 58.372 47.619 0.00 0.00 0.00 2.24
32 33 1.446016 ACCACCCCTAAAGCTGAAGT 58.554 50.000 0.00 0.00 0.00 3.01
33 34 2.586648 AACCACCCCTAAAGCTGAAG 57.413 50.000 0.00 0.00 0.00 3.02
35 36 2.175931 TCAAAACCACCCCTAAAGCTGA 59.824 45.455 0.00 0.00 0.00 4.26
36 37 2.593026 TCAAAACCACCCCTAAAGCTG 58.407 47.619 0.00 0.00 0.00 4.24
37 38 3.165071 CATCAAAACCACCCCTAAAGCT 58.835 45.455 0.00 0.00 0.00 3.74
38 39 3.056821 GTCATCAAAACCACCCCTAAAGC 60.057 47.826 0.00 0.00 0.00 3.51
39 40 4.148838 TGTCATCAAAACCACCCCTAAAG 58.851 43.478 0.00 0.00 0.00 1.85
40 41 4.141135 TCTGTCATCAAAACCACCCCTAAA 60.141 41.667 0.00 0.00 0.00 1.85
41 42 3.396276 TCTGTCATCAAAACCACCCCTAA 59.604 43.478 0.00 0.00 0.00 2.69
44 45 1.886542 GTCTGTCATCAAAACCACCCC 59.113 52.381 0.00 0.00 0.00 4.95
46 47 6.385649 TTTTAGTCTGTCATCAAAACCACC 57.614 37.500 0.00 0.00 0.00 4.61
47 48 8.871686 AATTTTTAGTCTGTCATCAAAACCAC 57.128 30.769 0.00 0.00 0.00 4.16
94 95 3.003378 GCCACCTGTAAGTGAGAAAACAC 59.997 47.826 0.00 0.00 40.34 3.32
95 96 3.211045 GCCACCTGTAAGTGAGAAAACA 58.789 45.455 0.00 0.00 40.34 2.83
96 97 2.223377 CGCCACCTGTAAGTGAGAAAAC 59.777 50.000 0.00 0.00 40.34 2.43
97 98 2.489971 CGCCACCTGTAAGTGAGAAAA 58.510 47.619 0.00 0.00 40.34 2.29
101 102 1.079127 CCCGCCACCTGTAAGTGAG 60.079 63.158 0.00 0.00 40.34 3.51
102 103 2.589157 CCCCGCCACCTGTAAGTGA 61.589 63.158 0.00 0.00 40.34 3.41
103 104 2.046314 CCCCGCCACCTGTAAGTG 60.046 66.667 0.00 0.00 37.51 3.16
105 106 2.046314 CACCCCGCCACCTGTAAG 60.046 66.667 0.00 0.00 0.00 2.34
106 107 3.642503 CCACCCCGCCACCTGTAA 61.643 66.667 0.00 0.00 0.00 2.41
114 115 1.334384 AATAAATTGCCCACCCCGCC 61.334 55.000 0.00 0.00 0.00 6.13
125 126 7.092716 ACTGCCTCTAAAGTTGCAATAAATTG 58.907 34.615 0.59 0.00 40.66 2.32
126 127 7.232118 ACTGCCTCTAAAGTTGCAATAAATT 57.768 32.000 0.59 0.00 32.58 1.82
127 128 6.840780 ACTGCCTCTAAAGTTGCAATAAAT 57.159 33.333 0.59 0.00 32.58 1.40
128 129 6.648879 AACTGCCTCTAAAGTTGCAATAAA 57.351 33.333 0.59 0.00 35.34 1.40
129 130 6.567701 CGAAACTGCCTCTAAAGTTGCAATAA 60.568 38.462 0.59 0.00 36.75 1.40
130 131 5.106712 CGAAACTGCCTCTAAAGTTGCAATA 60.107 40.000 0.59 0.00 36.75 1.90
131 132 4.320494 CGAAACTGCCTCTAAAGTTGCAAT 60.320 41.667 0.59 0.00 36.75 3.56
132 133 3.003275 CGAAACTGCCTCTAAAGTTGCAA 59.997 43.478 0.00 0.00 36.75 4.08
133 134 2.548057 CGAAACTGCCTCTAAAGTTGCA 59.452 45.455 0.00 0.00 36.75 4.08
136 137 4.691216 GTCATCGAAACTGCCTCTAAAGTT 59.309 41.667 0.00 0.00 38.25 2.66
138 139 4.245660 TGTCATCGAAACTGCCTCTAAAG 58.754 43.478 0.00 0.00 0.00 1.85
139 140 4.021456 TCTGTCATCGAAACTGCCTCTAAA 60.021 41.667 0.00 0.00 0.00 1.85
140 141 3.509967 TCTGTCATCGAAACTGCCTCTAA 59.490 43.478 0.00 0.00 0.00 2.10
141 142 3.089284 TCTGTCATCGAAACTGCCTCTA 58.911 45.455 0.00 0.00 0.00 2.43
144 145 1.344438 TGTCTGTCATCGAAACTGCCT 59.656 47.619 0.00 0.00 0.00 4.75
145 146 1.795768 TGTCTGTCATCGAAACTGCC 58.204 50.000 0.00 0.00 0.00 4.85
146 147 3.878086 TTTGTCTGTCATCGAAACTGC 57.122 42.857 0.00 0.00 0.00 4.40
201 202 3.525609 TCCACCTGCCATCCATAAGTAAA 59.474 43.478 0.00 0.00 0.00 2.01
203 204 2.770447 TCCACCTGCCATCCATAAGTA 58.230 47.619 0.00 0.00 0.00 2.24
205 206 2.965671 ATCCACCTGCCATCCATAAG 57.034 50.000 0.00 0.00 0.00 1.73
207 208 5.337956 AAATTATCCACCTGCCATCCATA 57.662 39.130 0.00 0.00 0.00 2.74
208 209 3.909427 AATTATCCACCTGCCATCCAT 57.091 42.857 0.00 0.00 0.00 3.41
209 210 3.686227 AAATTATCCACCTGCCATCCA 57.314 42.857 0.00 0.00 0.00 3.41
211 212 5.827797 TGAAGTAAATTATCCACCTGCCATC 59.172 40.000 0.00 0.00 0.00 3.51
213 214 5.186256 TGAAGTAAATTATCCACCTGCCA 57.814 39.130 0.00 0.00 0.00 4.92
214 215 5.652452 AGTTGAAGTAAATTATCCACCTGCC 59.348 40.000 0.00 0.00 0.00 4.85
215 216 6.759497 AGTTGAAGTAAATTATCCACCTGC 57.241 37.500 0.00 0.00 0.00 4.85
230 231 8.630037 CCTAAAAGTTGTCCATAAAGTTGAAGT 58.370 33.333 0.00 0.00 0.00 3.01
231 232 8.082242 CCCTAAAAGTTGTCCATAAAGTTGAAG 58.918 37.037 0.00 0.00 0.00 3.02
233 234 7.064229 ACCCTAAAAGTTGTCCATAAAGTTGA 58.936 34.615 0.00 0.00 0.00 3.18
234 235 7.284919 ACCCTAAAAGTTGTCCATAAAGTTG 57.715 36.000 0.00 0.00 0.00 3.16
235 236 8.442374 TCTACCCTAAAAGTTGTCCATAAAGTT 58.558 33.333 0.00 0.00 0.00 2.66
238 239 8.607713 TCATCTACCCTAAAAGTTGTCCATAAA 58.392 33.333 0.00 0.00 0.00 1.40
239 240 8.153221 TCATCTACCCTAAAAGTTGTCCATAA 57.847 34.615 0.00 0.00 0.00 1.90
240 241 7.743116 TCATCTACCCTAAAAGTTGTCCATA 57.257 36.000 0.00 0.00 0.00 2.74
241 242 6.636454 TCATCTACCCTAAAAGTTGTCCAT 57.364 37.500 0.00 0.00 0.00 3.41
242 243 6.442541 TTCATCTACCCTAAAAGTTGTCCA 57.557 37.500 0.00 0.00 0.00 4.02
243 244 8.483758 TCTATTCATCTACCCTAAAAGTTGTCC 58.516 37.037 0.00 0.00 0.00 4.02
244 245 9.315525 GTCTATTCATCTACCCTAAAAGTTGTC 57.684 37.037 0.00 0.00 0.00 3.18
245 246 8.265764 GGTCTATTCATCTACCCTAAAAGTTGT 58.734 37.037 0.00 0.00 0.00 3.32
246 247 7.438459 CGGTCTATTCATCTACCCTAAAAGTTG 59.562 40.741 0.00 0.00 0.00 3.16
247 248 7.343833 TCGGTCTATTCATCTACCCTAAAAGTT 59.656 37.037 0.00 0.00 0.00 2.66
248 249 6.837568 TCGGTCTATTCATCTACCCTAAAAGT 59.162 38.462 0.00 0.00 0.00 2.66
249 250 7.286215 TCGGTCTATTCATCTACCCTAAAAG 57.714 40.000 0.00 0.00 0.00 2.27
250 251 7.664552 TTCGGTCTATTCATCTACCCTAAAA 57.335 36.000 0.00 0.00 0.00 1.52
254 255 6.555463 TTTTTCGGTCTATTCATCTACCCT 57.445 37.500 0.00 0.00 0.00 4.34
255 256 6.204882 CCATTTTTCGGTCTATTCATCTACCC 59.795 42.308 0.00 0.00 0.00 3.69
256 257 6.990349 TCCATTTTTCGGTCTATTCATCTACC 59.010 38.462 0.00 0.00 0.00 3.18
257 258 7.926555 TCTCCATTTTTCGGTCTATTCATCTAC 59.073 37.037 0.00 0.00 0.00 2.59
258 259 8.018537 TCTCCATTTTTCGGTCTATTCATCTA 57.981 34.615 0.00 0.00 0.00 1.98
259 260 6.889198 TCTCCATTTTTCGGTCTATTCATCT 58.111 36.000 0.00 0.00 0.00 2.90
260 261 7.553881 TTCTCCATTTTTCGGTCTATTCATC 57.446 36.000 0.00 0.00 0.00 2.92
261 262 7.393234 TGTTTCTCCATTTTTCGGTCTATTCAT 59.607 33.333 0.00 0.00 0.00 2.57
263 264 7.021790 GTGTTTCTCCATTTTTCGGTCTATTC 58.978 38.462 0.00 0.00 0.00 1.75
264 265 6.488683 TGTGTTTCTCCATTTTTCGGTCTATT 59.511 34.615 0.00 0.00 0.00 1.73
265 266 6.001460 TGTGTTTCTCCATTTTTCGGTCTAT 58.999 36.000 0.00 0.00 0.00 1.98
266 267 5.237779 GTGTGTTTCTCCATTTTTCGGTCTA 59.762 40.000 0.00 0.00 0.00 2.59
268 269 4.287720 GTGTGTTTCTCCATTTTTCGGTC 58.712 43.478 0.00 0.00 0.00 4.79
270 271 3.317993 AGGTGTGTTTCTCCATTTTTCGG 59.682 43.478 0.00 0.00 32.63 4.30
271 272 4.036262 TGAGGTGTGTTTCTCCATTTTTCG 59.964 41.667 0.00 0.00 32.63 3.46
272 273 5.067805 AGTGAGGTGTGTTTCTCCATTTTTC 59.932 40.000 0.00 0.00 32.63 2.29
274 275 4.536765 AGTGAGGTGTGTTTCTCCATTTT 58.463 39.130 0.00 0.00 32.63 1.82
275 276 4.170468 AGTGAGGTGTGTTTCTCCATTT 57.830 40.909 0.00 0.00 32.63 2.32
277 278 3.864789 AAGTGAGGTGTGTTTCTCCAT 57.135 42.857 0.00 0.00 32.63 3.41
278 279 3.644966 AAAGTGAGGTGTGTTTCTCCA 57.355 42.857 0.00 0.00 32.63 3.86
279 280 5.531287 ACAATAAAGTGAGGTGTGTTTCTCC 59.469 40.000 0.00 0.00 0.00 3.71
281 282 8.691661 AATACAATAAAGTGAGGTGTGTTTCT 57.308 30.769 0.00 0.00 0.00 2.52
319 320 8.992349 TCCGATGACAATTTATCCCATATCTAT 58.008 33.333 0.00 0.00 0.00 1.98
320 321 8.374184 TCCGATGACAATTTATCCCATATCTA 57.626 34.615 0.00 0.00 0.00 1.98
321 322 7.180946 TCTCCGATGACAATTTATCCCATATCT 59.819 37.037 0.00 0.00 0.00 1.98
322 323 7.331026 TCTCCGATGACAATTTATCCCATATC 58.669 38.462 0.00 0.00 0.00 1.63
323 324 7.257790 TCTCCGATGACAATTTATCCCATAT 57.742 36.000 0.00 0.00 0.00 1.78
325 326 5.567037 TCTCCGATGACAATTTATCCCAT 57.433 39.130 0.00 0.00 0.00 4.00
328 329 8.290325 GGTTTATTCTCCGATGACAATTTATCC 58.710 37.037 0.00 0.00 0.00 2.59
329 330 8.836413 TGGTTTATTCTCCGATGACAATTTATC 58.164 33.333 0.00 0.00 0.00 1.75
331 332 8.746052 ATGGTTTATTCTCCGATGACAATTTA 57.254 30.769 0.00 0.00 0.00 1.40
332 333 7.645058 ATGGTTTATTCTCCGATGACAATTT 57.355 32.000 0.00 0.00 0.00 1.82
333 334 7.339212 TGAATGGTTTATTCTCCGATGACAATT 59.661 33.333 0.00 0.00 44.49 2.32
334 335 6.828273 TGAATGGTTTATTCTCCGATGACAAT 59.172 34.615 0.00 0.00 44.49 2.71
335 336 6.176896 TGAATGGTTTATTCTCCGATGACAA 58.823 36.000 0.00 0.00 44.49 3.18
337 338 6.867662 ATGAATGGTTTATTCTCCGATGAC 57.132 37.500 0.00 0.00 44.49 3.06
339 340 9.450807 GTTTTATGAATGGTTTATTCTCCGATG 57.549 33.333 0.00 0.00 44.49 3.84
340 341 9.184523 TGTTTTATGAATGGTTTATTCTCCGAT 57.815 29.630 0.00 0.00 44.49 4.18
341 342 8.568676 TGTTTTATGAATGGTTTATTCTCCGA 57.431 30.769 0.00 0.00 44.49 4.55
342 343 9.801873 ATTGTTTTATGAATGGTTTATTCTCCG 57.198 29.630 0.00 0.00 44.49 4.63
354 355 8.415553 TCAGGCCATTCTATTGTTTTATGAATG 58.584 33.333 5.01 0.00 41.85 2.67
355 356 8.537728 TCAGGCCATTCTATTGTTTTATGAAT 57.462 30.769 5.01 0.00 0.00 2.57
357 358 7.953005 TTCAGGCCATTCTATTGTTTTATGA 57.047 32.000 5.01 0.00 0.00 2.15
358 359 8.253113 ACTTTCAGGCCATTCTATTGTTTTATG 58.747 33.333 5.01 0.00 0.00 1.90
359 360 8.366359 ACTTTCAGGCCATTCTATTGTTTTAT 57.634 30.769 5.01 0.00 0.00 1.40
361 362 6.670695 ACTTTCAGGCCATTCTATTGTTTT 57.329 33.333 5.01 0.00 0.00 2.43
362 363 6.458210 CAACTTTCAGGCCATTCTATTGTTT 58.542 36.000 5.01 0.00 0.00 2.83
363 364 5.567423 GCAACTTTCAGGCCATTCTATTGTT 60.567 40.000 5.01 0.00 0.00 2.83
364 365 4.082026 GCAACTTTCAGGCCATTCTATTGT 60.082 41.667 5.01 0.00 0.00 2.71
366 367 3.129287 CGCAACTTTCAGGCCATTCTATT 59.871 43.478 5.01 0.00 0.00 1.73
367 368 2.684881 CGCAACTTTCAGGCCATTCTAT 59.315 45.455 5.01 0.00 0.00 1.98
368 369 2.083774 CGCAACTTTCAGGCCATTCTA 58.916 47.619 5.01 0.00 0.00 2.10
370 371 0.733909 GCGCAACTTTCAGGCCATTC 60.734 55.000 5.01 0.00 0.00 2.67
371 372 1.181098 AGCGCAACTTTCAGGCCATT 61.181 50.000 11.47 0.00 0.00 3.16
372 373 0.322456 TAGCGCAACTTTCAGGCCAT 60.322 50.000 11.47 0.00 0.00 4.40
373 374 0.536233 TTAGCGCAACTTTCAGGCCA 60.536 50.000 11.47 0.00 0.00 5.36
374 375 0.596082 TTTAGCGCAACTTTCAGGCC 59.404 50.000 11.47 0.00 0.00 5.19
375 376 2.636768 ATTTAGCGCAACTTTCAGGC 57.363 45.000 11.47 0.00 0.00 4.85
376 377 5.669122 CAAAAATTTAGCGCAACTTTCAGG 58.331 37.500 11.47 0.00 0.00 3.86
377 378 5.050837 AGCAAAAATTTAGCGCAACTTTCAG 60.051 36.000 11.47 6.47 0.00 3.02
378 379 4.808364 AGCAAAAATTTAGCGCAACTTTCA 59.192 33.333 11.47 0.00 0.00 2.69
379 380 5.051106 TGAGCAAAAATTTAGCGCAACTTTC 60.051 36.000 11.47 5.92 35.20 2.62
380 381 4.808364 TGAGCAAAAATTTAGCGCAACTTT 59.192 33.333 11.47 6.16 35.20 2.66
381 382 4.367450 TGAGCAAAAATTTAGCGCAACTT 58.633 34.783 11.47 0.00 35.20 2.66
384 385 6.455380 GCAATATGAGCAAAAATTTAGCGCAA 60.455 34.615 20.01 12.70 41.18 4.85
385 386 5.005586 GCAATATGAGCAAAAATTTAGCGCA 59.994 36.000 18.97 18.97 41.99 6.09
387 388 6.254157 AGTGCAATATGAGCAAAAATTTAGCG 59.746 34.615 4.82 0.00 44.64 4.26
388 389 7.529880 AGTGCAATATGAGCAAAAATTTAGC 57.470 32.000 4.82 7.30 44.64 3.09
414 415 7.865707 AGTTGCACAACACATTTGTTTAAAAA 58.134 26.923 15.40 0.00 43.89 1.94
417 418 6.159293 TGAGTTGCACAACACATTTGTTTAA 58.841 32.000 15.40 0.00 43.89 1.52
418 419 5.714047 TGAGTTGCACAACACATTTGTTTA 58.286 33.333 15.40 0.00 43.89 2.01
419 420 4.564041 TGAGTTGCACAACACATTTGTTT 58.436 34.783 15.40 0.00 43.89 2.83
423 424 3.195396 ACCTTGAGTTGCACAACACATTT 59.805 39.130 15.40 1.15 43.47 2.32
424 425 2.760092 ACCTTGAGTTGCACAACACATT 59.240 40.909 15.40 1.46 43.47 2.71
425 426 2.099592 CACCTTGAGTTGCACAACACAT 59.900 45.455 15.40 0.00 43.47 3.21
426 427 1.472082 CACCTTGAGTTGCACAACACA 59.528 47.619 15.40 12.24 43.47 3.72
427 428 1.798813 GCACCTTGAGTTGCACAACAC 60.799 52.381 15.40 9.80 43.47 3.32
428 429 0.455410 GCACCTTGAGTTGCACAACA 59.545 50.000 15.40 0.00 43.47 3.33
430 431 0.395586 AGGCACCTTGAGTTGCACAA 60.396 50.000 2.96 0.00 0.00 3.33
431 432 1.102809 CAGGCACCTTGAGTTGCACA 61.103 55.000 2.96 0.00 0.00 4.57
432 433 0.819259 TCAGGCACCTTGAGTTGCAC 60.819 55.000 2.96 0.00 0.00 4.57
433 434 0.819259 GTCAGGCACCTTGAGTTGCA 60.819 55.000 2.96 0.00 0.00 4.08
434 435 0.536006 AGTCAGGCACCTTGAGTTGC 60.536 55.000 0.00 0.00 0.00 4.17
436 437 1.972872 CAAGTCAGGCACCTTGAGTT 58.027 50.000 5.25 0.00 40.36 3.01
437 438 0.536006 GCAAGTCAGGCACCTTGAGT 60.536 55.000 12.96 0.00 40.36 3.41
438 439 0.250640 AGCAAGTCAGGCACCTTGAG 60.251 55.000 12.96 0.00 40.36 3.02
439 440 0.535780 CAGCAAGTCAGGCACCTTGA 60.536 55.000 12.96 0.00 40.36 3.02
442 443 1.228063 CACAGCAAGTCAGGCACCT 60.228 57.895 0.00 0.00 0.00 4.00
443 444 2.912624 GCACAGCAAGTCAGGCACC 61.913 63.158 0.00 0.00 0.00 5.01
445 446 1.598962 GAGCACAGCAAGTCAGGCA 60.599 57.895 0.00 0.00 0.00 4.75
446 447 0.888285 AAGAGCACAGCAAGTCAGGC 60.888 55.000 0.00 0.00 0.00 4.85
447 448 0.873054 CAAGAGCACAGCAAGTCAGG 59.127 55.000 0.00 0.00 0.00 3.86
448 449 0.237761 GCAAGAGCACAGCAAGTCAG 59.762 55.000 0.00 0.00 41.58 3.51
449 450 2.324215 GCAAGAGCACAGCAAGTCA 58.676 52.632 0.00 0.00 41.58 3.41
462 463 3.754850 CAGGACAGACATTGAATGCAAGA 59.245 43.478 4.84 0.00 37.45 3.02
464 465 3.253921 CACAGGACAGACATTGAATGCAA 59.746 43.478 4.84 0.00 38.60 4.08
467 468 3.415212 ACCACAGGACAGACATTGAATG 58.585 45.455 3.16 3.16 0.00 2.67
468 469 3.795688 ACCACAGGACAGACATTGAAT 57.204 42.857 0.00 0.00 0.00 2.57
469 470 3.136443 AGAACCACAGGACAGACATTGAA 59.864 43.478 0.00 0.00 0.00 2.69
471 472 3.131709 AGAACCACAGGACAGACATTG 57.868 47.619 0.00 0.00 0.00 2.82
472 473 3.864789 AAGAACCACAGGACAGACATT 57.135 42.857 0.00 0.00 0.00 2.71
473 474 3.480470 CAAAGAACCACAGGACAGACAT 58.520 45.455 0.00 0.00 0.00 3.06
474 475 2.421388 CCAAAGAACCACAGGACAGACA 60.421 50.000 0.00 0.00 0.00 3.41
477 478 2.222027 GTCCAAAGAACCACAGGACAG 58.778 52.381 0.00 0.00 46.15 3.51
480 481 2.441375 TCATGTCCAAAGAACCACAGGA 59.559 45.455 0.00 0.00 0.00 3.86
481 482 2.862541 TCATGTCCAAAGAACCACAGG 58.137 47.619 0.00 0.00 0.00 4.00
482 483 5.491070 TCTATCATGTCCAAAGAACCACAG 58.509 41.667 0.00 0.00 0.00 3.66
483 484 5.497464 TCTATCATGTCCAAAGAACCACA 57.503 39.130 0.00 0.00 0.00 4.17
484 485 7.552687 TGTAATCTATCATGTCCAAAGAACCAC 59.447 37.037 0.00 0.00 0.00 4.16
485 486 7.629157 TGTAATCTATCATGTCCAAAGAACCA 58.371 34.615 0.00 0.00 0.00 3.67
486 487 8.682936 ATGTAATCTATCATGTCCAAAGAACC 57.317 34.615 0.00 0.00 0.00 3.62
492 493 9.987272 CAGAGTAATGTAATCTATCATGTCCAA 57.013 33.333 0.00 0.00 31.05 3.53
493 494 9.147732 ACAGAGTAATGTAATCTATCATGTCCA 57.852 33.333 0.00 0.00 31.05 4.02
494 495 9.988815 AACAGAGTAATGTAATCTATCATGTCC 57.011 33.333 0.00 0.00 31.05 4.02
529 530 0.036010 ACTGTGGCTCCAATCTTCCG 60.036 55.000 0.00 0.00 0.00 4.30
531 532 1.457346 CCACTGTGGCTCCAATCTTC 58.543 55.000 14.87 0.00 0.00 2.87
532 533 0.038744 CCCACTGTGGCTCCAATCTT 59.961 55.000 21.47 0.00 35.79 2.40
534 535 1.379044 CCCCACTGTGGCTCCAATC 60.379 63.158 21.47 0.00 35.79 2.67
535 536 1.852157 TCCCCACTGTGGCTCCAAT 60.852 57.895 21.47 0.00 35.79 3.16
539 540 2.348998 CACTCCCCACTGTGGCTC 59.651 66.667 21.47 0.00 35.79 4.70
540 541 3.252284 CCACTCCCCACTGTGGCT 61.252 66.667 21.47 0.17 45.68 4.75
543 544 2.833913 AAGCCCACTCCCCACTGTG 61.834 63.158 0.00 0.00 0.00 3.66
544 545 2.450502 AAGCCCACTCCCCACTGT 60.451 61.111 0.00 0.00 0.00 3.55
547 548 0.759060 AAAACAAGCCCACTCCCCAC 60.759 55.000 0.00 0.00 0.00 4.61
550 551 0.389025 CACAAAACAAGCCCACTCCC 59.611 55.000 0.00 0.00 0.00 4.30
551 552 0.389025 CCACAAAACAAGCCCACTCC 59.611 55.000 0.00 0.00 0.00 3.85
553 554 2.086610 ATCCACAAAACAAGCCCACT 57.913 45.000 0.00 0.00 0.00 4.00
555 556 4.220382 CAGATTATCCACAAAACAAGCCCA 59.780 41.667 0.00 0.00 0.00 5.36
556 557 4.462483 TCAGATTATCCACAAAACAAGCCC 59.538 41.667 0.00 0.00 0.00 5.19
558 559 7.653311 AGTTTTCAGATTATCCACAAAACAAGC 59.347 33.333 18.12 0.00 36.58 4.01
559 560 8.971321 CAGTTTTCAGATTATCCACAAAACAAG 58.029 33.333 18.12 11.00 36.58 3.16
560 561 8.690884 TCAGTTTTCAGATTATCCACAAAACAA 58.309 29.630 18.12 9.07 36.58 2.83
561 562 8.231692 TCAGTTTTCAGATTATCCACAAAACA 57.768 30.769 18.12 4.60 36.58 2.83
562 563 7.327032 GCTCAGTTTTCAGATTATCCACAAAAC 59.673 37.037 12.37 12.37 35.08 2.43
563 564 7.231317 AGCTCAGTTTTCAGATTATCCACAAAA 59.769 33.333 0.00 0.00 0.00 2.44
602 603 3.411517 CCACCGGCCCTCCAATCT 61.412 66.667 0.00 0.00 0.00 2.40
651 652 2.669364 GCAGAAAGCAGTGGAAACATG 58.331 47.619 0.00 0.00 43.48 3.21
663 664 4.802563 GGCTTCATTGATTTAGCAGAAAGC 59.197 41.667 10.21 0.00 46.19 3.51
664 665 5.032863 CGGCTTCATTGATTTAGCAGAAAG 58.967 41.667 10.21 0.00 35.36 2.62
665 666 4.142403 CCGGCTTCATTGATTTAGCAGAAA 60.142 41.667 10.21 0.00 35.36 2.52
667 668 2.945008 CCGGCTTCATTGATTTAGCAGA 59.055 45.455 10.21 0.00 35.36 4.26
668 669 2.684881 ACCGGCTTCATTGATTTAGCAG 59.315 45.455 0.00 6.58 35.36 4.24
670 671 2.682856 TCACCGGCTTCATTGATTTAGC 59.317 45.455 0.00 0.98 0.00 3.09
671 672 5.505173 AATCACCGGCTTCATTGATTTAG 57.495 39.130 0.00 0.00 35.60 1.85
673 674 4.497300 CAAATCACCGGCTTCATTGATTT 58.503 39.130 17.96 17.96 45.32 2.17
677 678 1.632422 GCAAATCACCGGCTTCATTG 58.368 50.000 0.00 1.99 0.00 2.82
678 679 0.532115 GGCAAATCACCGGCTTCATT 59.468 50.000 0.00 0.00 0.00 2.57
679 680 2.192605 GGCAAATCACCGGCTTCAT 58.807 52.632 0.00 0.00 0.00 2.57
680 681 3.680156 GGCAAATCACCGGCTTCA 58.320 55.556 0.00 0.00 0.00 3.02
687 688 0.526211 GAAAGACCCGGCAAATCACC 59.474 55.000 0.00 0.00 0.00 4.02
688 689 1.243902 TGAAAGACCCGGCAAATCAC 58.756 50.000 0.00 0.00 0.00 3.06
689 690 1.988293 TTGAAAGACCCGGCAAATCA 58.012 45.000 0.00 0.00 0.00 2.57
690 691 3.378911 TTTTGAAAGACCCGGCAAATC 57.621 42.857 0.00 0.00 31.20 2.17
714 715 4.448720 ACTAGCTTAGTGGGGTGTTTTT 57.551 40.909 0.00 0.00 37.69 1.94
737 738 3.055458 TCAATCGGACAATCACTAGCCAA 60.055 43.478 0.00 0.00 0.00 4.52
739 740 2.866762 GTCAATCGGACAATCACTAGCC 59.133 50.000 0.00 0.00 46.19 3.93
841 1025 2.639286 CGCTTGGGTGTCTTGTGC 59.361 61.111 0.00 0.00 0.00 4.57
842 1026 1.723608 TTGCGCTTGGGTGTCTTGTG 61.724 55.000 9.73 0.00 0.00 3.33
843 1027 1.034838 TTTGCGCTTGGGTGTCTTGT 61.035 50.000 9.73 0.00 0.00 3.16
845 1029 1.000274 GATTTTGCGCTTGGGTGTCTT 60.000 47.619 9.73 0.00 0.00 3.01
847 1031 0.388520 GGATTTTGCGCTTGGGTGTC 60.389 55.000 9.73 0.00 0.00 3.67
849 1033 0.388907 CTGGATTTTGCGCTTGGGTG 60.389 55.000 9.73 0.00 0.00 4.61
851 1035 0.109132 GACTGGATTTTGCGCTTGGG 60.109 55.000 9.73 0.00 0.00 4.12
853 1037 0.597568 TGGACTGGATTTTGCGCTTG 59.402 50.000 9.73 0.00 0.00 4.01
856 1040 1.153958 GCTGGACTGGATTTTGCGC 60.154 57.895 0.00 0.00 0.00 6.09
857 1041 1.243342 TGGCTGGACTGGATTTTGCG 61.243 55.000 0.00 0.00 0.00 4.85
861 1045 1.002134 CGGTGGCTGGACTGGATTT 60.002 57.895 0.00 0.00 0.00 2.17
866 1050 4.624364 TGTGCGGTGGCTGGACTG 62.624 66.667 1.65 0.00 40.82 3.51
884 1068 3.894547 TTTCTCTTGGCGGCGGTCC 62.895 63.158 9.78 2.12 0.00 4.46
885 1069 2.358247 TTTCTCTTGGCGGCGGTC 60.358 61.111 9.78 0.00 0.00 4.79
886 1070 2.668550 GTTTCTCTTGGCGGCGGT 60.669 61.111 9.78 0.00 0.00 5.68
888 1072 1.966451 AAGGTTTCTCTTGGCGGCG 60.966 57.895 0.51 0.51 0.00 6.46
890 1074 1.581447 GCAAGGTTTCTCTTGGCGG 59.419 57.895 6.71 0.00 43.06 6.13
891 1075 1.207593 CGCAAGGTTTCTCTTGGCG 59.792 57.895 6.71 0.00 43.06 5.69
893 1077 1.207593 CGCGCAAGGTTTCTCTTGG 59.792 57.895 8.75 0.00 43.06 3.61
894 1078 1.441016 GCGCGCAAGGTTTCTCTTG 60.441 57.895 29.10 0.00 44.97 3.02
937 1121 5.248477 GCTTCACTGGGGTGGATTATATAGA 59.752 44.000 0.00 0.00 43.17 1.98
955 1139 1.227853 AGGTGTTCCGGTGCTTCAC 60.228 57.895 0.00 5.12 39.05 3.18
1248 1484 1.064946 CTCCAGCCGCGAGAAGTAG 59.935 63.158 8.23 0.00 0.00 2.57
1580 2910 0.603569 CTGCCCGATAGCCGTCTTAT 59.396 55.000 0.00 0.00 36.31 1.73
1695 3033 2.453983 ATTCCATGTTTGCAAACCCG 57.546 45.000 33.33 24.71 38.11 5.28
1780 3191 9.908152 GGCGTTGAAATATATAAAAAGGCTTAT 57.092 29.630 0.00 0.00 0.00 1.73
1781 3192 8.071368 CGGCGTTGAAATATATAAAAAGGCTTA 58.929 33.333 0.00 0.00 0.00 3.09
1782 3193 6.915843 CGGCGTTGAAATATATAAAAAGGCTT 59.084 34.615 0.00 0.00 0.00 4.35
1783 3194 6.261381 TCGGCGTTGAAATATATAAAAAGGCT 59.739 34.615 6.85 0.00 0.00 4.58
1784 3195 6.432107 TCGGCGTTGAAATATATAAAAAGGC 58.568 36.000 6.85 8.97 0.00 4.35
1835 3246 9.624373 AGCAAAATGAATGAATCTACACTCTAT 57.376 29.630 0.00 0.00 0.00 1.98
1836 3247 9.102757 GAGCAAAATGAATGAATCTACACTCTA 57.897 33.333 0.00 0.00 0.00 2.43
1837 3248 7.066766 GGAGCAAAATGAATGAATCTACACTCT 59.933 37.037 0.00 0.00 0.00 3.24
1838 3249 7.066766 AGGAGCAAAATGAATGAATCTACACTC 59.933 37.037 0.00 0.00 0.00 3.51
1839 3250 6.888632 AGGAGCAAAATGAATGAATCTACACT 59.111 34.615 0.00 0.00 0.00 3.55
1840 3251 7.093322 AGGAGCAAAATGAATGAATCTACAC 57.907 36.000 0.00 0.00 0.00 2.90
1851 3262 7.506114 ACGGACTATATAAGGAGCAAAATGAA 58.494 34.615 0.00 0.00 0.00 2.57
1853 3264 9.088512 GATACGGACTATATAAGGAGCAAAATG 57.911 37.037 0.00 0.00 0.00 2.32
1854 3265 7.974501 CGATACGGACTATATAAGGAGCAAAAT 59.025 37.037 0.00 0.00 0.00 1.82
1855 3266 7.175467 TCGATACGGACTATATAAGGAGCAAAA 59.825 37.037 0.00 0.00 0.00 2.44
1861 3272 9.107177 GAGATTTCGATACGGACTATATAAGGA 57.893 37.037 0.00 0.00 0.00 3.36
1862 3273 9.111613 AGAGATTTCGATACGGACTATATAAGG 57.888 37.037 0.00 0.00 0.00 2.69
1868 3279 8.298140 CCTTTTAGAGATTTCGATACGGACTAT 58.702 37.037 0.00 0.00 0.00 2.12
1869 3280 7.255381 CCCTTTTAGAGATTTCGATACGGACTA 60.255 40.741 0.00 0.00 0.00 2.59
1871 3282 5.690857 CCCTTTTAGAGATTTCGATACGGAC 59.309 44.000 0.00 0.00 0.00 4.79
1874 3285 5.290386 AGCCCTTTTAGAGATTTCGATACG 58.710 41.667 0.00 0.00 0.00 3.06
1875 3286 7.555306 AAAGCCCTTTTAGAGATTTCGATAC 57.445 36.000 0.00 0.00 0.00 2.24
1877 3288 8.753497 ATAAAAGCCCTTTTAGAGATTTCGAT 57.247 30.769 15.81 0.00 44.95 3.59
1889 3300 9.671279 CATCCATTCTTAAATAAAAGCCCTTTT 57.329 29.630 10.48 10.48 44.16 2.27
1890 3301 7.770433 GCATCCATTCTTAAATAAAAGCCCTTT 59.230 33.333 0.00 0.00 0.00 3.11
1891 3302 7.092935 TGCATCCATTCTTAAATAAAAGCCCTT 60.093 33.333 0.00 0.00 0.00 3.95
1892 3303 6.383726 TGCATCCATTCTTAAATAAAAGCCCT 59.616 34.615 0.00 0.00 0.00 5.19
1893 3304 6.581712 TGCATCCATTCTTAAATAAAAGCCC 58.418 36.000 0.00 0.00 0.00 5.19
1895 3306 9.971922 ATACTGCATCCATTCTTAAATAAAAGC 57.028 29.630 0.00 0.00 0.00 3.51
1901 3312 9.337396 TCGTTAATACTGCATCCATTCTTAAAT 57.663 29.630 0.00 0.00 0.00 1.40
1903 3314 8.201464 TCTCGTTAATACTGCATCCATTCTTAA 58.799 33.333 0.00 0.00 0.00 1.85
1906 3317 5.986135 GTCTCGTTAATACTGCATCCATTCT 59.014 40.000 0.00 0.00 0.00 2.40
1907 3318 5.986135 AGTCTCGTTAATACTGCATCCATTC 59.014 40.000 0.00 0.00 0.00 2.67
1908 3319 5.755375 CAGTCTCGTTAATACTGCATCCATT 59.245 40.000 0.00 0.00 34.73 3.16
1909 3320 5.292765 CAGTCTCGTTAATACTGCATCCAT 58.707 41.667 0.00 0.00 34.73 3.41
1911 3322 4.051922 CCAGTCTCGTTAATACTGCATCC 58.948 47.826 0.00 0.00 39.42 3.51
1914 3325 4.794278 TTCCAGTCTCGTTAATACTGCA 57.206 40.909 0.00 0.00 39.42 4.41
1915 3326 5.593010 AGATTCCAGTCTCGTTAATACTGC 58.407 41.667 0.00 0.00 39.42 4.40
1916 3327 9.582431 TTAAAGATTCCAGTCTCGTTAATACTG 57.418 33.333 0.00 0.00 40.24 2.74
1921 3374 7.389607 CCCTTTTAAAGATTCCAGTCTCGTTAA 59.610 37.037 6.24 0.00 0.00 2.01
1966 3604 9.474920 CAAAATGTCAAGCACTAATTTTTCCTA 57.525 29.630 0.00 0.00 30.17 2.94
1968 3606 7.071414 GCAAAATGTCAAGCACTAATTTTTCC 58.929 34.615 0.00 0.00 30.17 3.13
1999 4536 1.558756 CATGAACTCTCCCTCCTGCTT 59.441 52.381 0.00 0.00 0.00 3.91
2055 4592 4.434713 GTTGAGGTAAAACGATGGCAAT 57.565 40.909 0.00 0.00 0.00 3.56
2086 4623 3.420893 CATAAGACTTGTTGGAGGGCAA 58.579 45.455 0.00 0.00 0.00 4.52
2266 4803 3.520317 TCGTTGGACCTAACAACCCATAT 59.480 43.478 0.00 0.00 43.95 1.78
2316 4853 8.413309 TCAATCCATTCTTCTCACATTTCTTT 57.587 30.769 0.00 0.00 0.00 2.52
2376 4913 1.199615 TCATACCGATGGCCTTGTGA 58.800 50.000 3.32 0.00 33.49 3.58
2422 4963 7.816640 TCTAATTCATTTTCAAACGAGAAGGG 58.183 34.615 0.00 0.00 0.00 3.95
2466 5009 9.739276 ACAAGAAATGTTATTACCAGATTCTCA 57.261 29.630 0.00 0.00 40.06 3.27
2512 5067 7.362920 GCCACAATGAGTAACAAAACATCCTAT 60.363 37.037 0.00 0.00 0.00 2.57
2628 5183 1.750930 CATACCCCATGCGCTCTCT 59.249 57.895 9.73 0.00 0.00 3.10
2949 5512 6.000246 TCCAAATGGTGAGAATATAGCACA 58.000 37.500 0.00 0.00 34.33 4.57
2981 5544 8.201464 CCACGGGCTATTAATTTAGGAATTTTT 58.799 33.333 0.00 0.00 36.82 1.94
2985 5548 6.195600 TCCACGGGCTATTAATTTAGGAAT 57.804 37.500 0.00 0.00 0.00 3.01
2989 5553 7.169140 GCATTTTTCCACGGGCTATTAATTTAG 59.831 37.037 0.00 0.00 0.00 1.85
3054 5626 6.793505 AGTTGTTAGTAATAGCTACAGCCT 57.206 37.500 0.00 0.00 43.38 4.58
3111 5683 7.715266 TCATCCATCATTTTCCATGTGTAAA 57.285 32.000 0.00 0.00 0.00 2.01
3114 5686 7.901283 TTATCATCCATCATTTTCCATGTGT 57.099 32.000 0.00 0.00 0.00 3.72
3141 5717 2.545946 GCTTATGAACTCATCTTCCGCC 59.454 50.000 0.00 0.00 37.76 6.13
3174 5750 6.403049 CCCCGTAGATGCACATTTGTATATA 58.597 40.000 0.00 0.00 0.00 0.86
3181 5757 0.034574 TGCCCCGTAGATGCACATTT 60.035 50.000 0.00 0.00 0.00 2.32
3184 5760 1.146041 GATGCCCCGTAGATGCACA 59.854 57.895 0.00 0.00 36.74 4.57
3501 6077 1.860240 ACCTATCCTCCTGCCTAGTCA 59.140 52.381 0.00 0.00 0.00 3.41
3532 6108 3.941483 CTCTTACGAATCATGCTGGGTTT 59.059 43.478 0.00 0.00 0.00 3.27
3538 6114 2.555199 GCACCTCTTACGAATCATGCT 58.445 47.619 0.00 0.00 0.00 3.79
3592 6168 6.615264 ATGTGATCTCTAACATCATTGCAC 57.385 37.500 0.00 0.00 31.33 4.57
3657 6239 4.112634 TGCTACTCAGGAAAAATTGGGT 57.887 40.909 0.00 0.00 0.00 4.51
3725 6307 2.938798 ATCCCTTTGGACCGCCCA 60.939 61.111 0.00 0.00 45.58 5.36
3748 6330 1.053424 TCCAACCAACCTACTCGCTT 58.947 50.000 0.00 0.00 0.00 4.68
3771 6353 7.181569 TCATGTGTTGTATAGGATGTTCTGA 57.818 36.000 0.00 0.00 0.00 3.27
3772 6354 6.481313 CCTCATGTGTTGTATAGGATGTTCTG 59.519 42.308 0.00 0.00 0.00 3.02
3776 6358 6.753913 ATCCTCATGTGTTGTATAGGATGT 57.246 37.500 7.35 0.00 41.24 3.06
3837 6420 1.208052 GGACCTGTGCTTGATGCTCTA 59.792 52.381 0.00 0.00 43.37 2.43
3846 6429 2.885135 TGATTCATGGACCTGTGCTT 57.115 45.000 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.