Multiple sequence alignment - TraesCS2D01G053700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G053700 chr2D 100.000 2369 0 0 1 2369 21087520 21089888 0.000000e+00 4375
1 TraesCS2D01G053700 chr2D 97.015 201 5 1 2170 2369 565692204 565692004 1.050000e-88 337
2 TraesCS2D01G053700 chr2D 95.283 212 10 0 2158 2369 586269510 586269721 1.050000e-88 337
3 TraesCS2D01G053700 chr2D 96.552 203 6 1 2167 2369 23187226 23187427 3.770000e-88 335
4 TraesCS2D01G053700 chr2D 82.967 182 22 6 138 316 136380338 136380513 3.150000e-34 156
5 TraesCS2D01G053700 chrUn 89.822 1572 103 19 626 2167 154084153 154082609 0.000000e+00 1964
6 TraesCS2D01G053700 chrUn 89.655 1566 105 18 626 2161 210798653 210800191 0.000000e+00 1941
7 TraesCS2D01G053700 chrUn 89.504 1572 108 17 626 2167 154097317 154095773 0.000000e+00 1936
8 TraesCS2D01G053700 chrUn 89.440 1572 109 18 626 2167 146913953 146912409 0.000000e+00 1930
9 TraesCS2D01G053700 chrUn 89.150 1576 110 21 626 2167 146898981 146897433 0.000000e+00 1906
10 TraesCS2D01G053700 chrUn 87.977 1572 107 18 626 2167 147072497 147070978 0.000000e+00 1781
11 TraesCS2D01G053700 chrUn 91.731 1040 63 5 1128 2167 427197590 427196574 0.000000e+00 1423
12 TraesCS2D01G053700 chrUn 87.636 275 21 7 626 892 426721309 426721578 8.220000e-80 307
13 TraesCS2D01G053700 chrUn 86.777 121 12 3 22 140 146899630 146899512 5.310000e-27 132
14 TraesCS2D01G053700 chrUn 86.777 121 12 3 22 140 146914601 146914483 5.310000e-27 132
15 TraesCS2D01G053700 chrUn 86.777 121 12 3 22 140 147073147 147073029 5.310000e-27 132
16 TraesCS2D01G053700 chrUn 86.777 121 12 3 22 140 154097965 154097847 5.310000e-27 132
17 TraesCS2D01G053700 chrUn 85.827 127 14 3 16 140 210797999 210798123 5.310000e-27 132
18 TraesCS2D01G053700 chrUn 85.827 127 14 3 16 140 356698538 356698662 5.310000e-27 132
19 TraesCS2D01G053700 chrUn 85.827 127 14 3 16 140 376173853 376173977 5.310000e-27 132
20 TraesCS2D01G053700 chrUn 85.827 127 14 3 16 140 413422548 413422672 5.310000e-27 132
21 TraesCS2D01G053700 chrUn 85.827 127 14 3 16 140 465978193 465978317 5.310000e-27 132
22 TraesCS2D01G053700 chr2A 89.758 1572 104 18 626 2167 22939601 22938057 0.000000e+00 1958
23 TraesCS2D01G053700 chr2A 89.726 1567 102 21 626 2161 22618965 22620503 0.000000e+00 1947
24 TraesCS2D01G053700 chr2A 89.719 1566 104 19 626 2161 22651347 22652885 0.000000e+00 1947
25 TraesCS2D01G053700 chr2A 89.567 1572 106 19 626 2167 22802512 22800969 0.000000e+00 1941
26 TraesCS2D01G053700 chr2A 86.369 873 65 16 626 1468 23190284 23191132 0.000000e+00 904
27 TraesCS2D01G053700 chr2A 86.775 741 62 16 626 1335 22664790 22665525 0.000000e+00 793
28 TraesCS2D01G053700 chr2A 80.978 184 24 8 136 315 207465042 207465218 4.110000e-28 135
29 TraesCS2D01G053700 chr2B 85.563 1704 168 40 502 2161 34453445 34455114 0.000000e+00 1712
30 TraesCS2D01G053700 chr1D 98.477 197 2 1 2174 2369 461394960 461394764 1.740000e-91 346
31 TraesCS2D01G053700 chr3D 97.044 203 6 0 2167 2369 9085848 9086050 2.250000e-90 342
32 TraesCS2D01G053700 chr3D 96.602 206 5 1 2164 2369 549135356 549135559 8.110000e-90 340
33 TraesCS2D01G053700 chr3D 97.044 203 5 1 2167 2369 560316638 560316437 8.110000e-90 340
34 TraesCS2D01G053700 chr3D 82.292 192 25 6 136 324 604800476 604800291 8.770000e-35 158
35 TraesCS2D01G053700 chr7D 97.030 202 5 1 2168 2369 563056068 563055868 2.920000e-89 339
36 TraesCS2D01G053700 chr7D 82.873 181 22 6 138 315 71982549 71982375 1.130000e-33 154
37 TraesCS2D01G053700 chr5D 96.569 204 6 1 2167 2369 488039497 488039294 1.050000e-88 337
38 TraesCS2D01G053700 chr5B 83.684 190 25 5 132 320 48871503 48871687 8.700000e-40 174
39 TraesCS2D01G053700 chr7A 84.971 173 20 5 144 315 60050968 60050801 1.130000e-38 171
40 TraesCS2D01G053700 chr7B 84.393 173 22 3 144 316 129311197 129311030 5.240000e-37 165
41 TraesCS2D01G053700 chr4D 82.873 181 22 6 138 315 507858194 507858368 1.130000e-33 154
42 TraesCS2D01G053700 chr4A 83.140 172 24 4 144 315 625795682 625795516 4.080000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G053700 chr2D 21087520 21089888 2368 False 4375.0 4375 100.0000 1 2369 1 chr2D.!!$F1 2368
1 TraesCS2D01G053700 chrUn 154082609 154084153 1544 True 1964.0 1964 89.8220 626 2167 1 chrUn.!!$R1 1541
2 TraesCS2D01G053700 chrUn 427196574 427197590 1016 True 1423.0 1423 91.7310 1128 2167 1 chrUn.!!$R2 1039
3 TraesCS2D01G053700 chrUn 210797999 210800191 2192 False 1036.5 1941 87.7410 16 2161 2 chrUn.!!$F6 2145
4 TraesCS2D01G053700 chrUn 154095773 154097965 2192 True 1034.0 1936 88.1405 22 2167 2 chrUn.!!$R6 2145
5 TraesCS2D01G053700 chrUn 146912409 146914601 2192 True 1031.0 1930 88.1085 22 2167 2 chrUn.!!$R4 2145
6 TraesCS2D01G053700 chrUn 146897433 146899630 2197 True 1019.0 1906 87.9635 22 2167 2 chrUn.!!$R3 2145
7 TraesCS2D01G053700 chrUn 147070978 147073147 2169 True 956.5 1781 87.3770 22 2167 2 chrUn.!!$R5 2145
8 TraesCS2D01G053700 chr2A 22938057 22939601 1544 True 1958.0 1958 89.7580 626 2167 1 chr2A.!!$R2 1541
9 TraesCS2D01G053700 chr2A 22618965 22620503 1538 False 1947.0 1947 89.7260 626 2161 1 chr2A.!!$F1 1535
10 TraesCS2D01G053700 chr2A 22651347 22652885 1538 False 1947.0 1947 89.7190 626 2161 1 chr2A.!!$F2 1535
11 TraesCS2D01G053700 chr2A 22800969 22802512 1543 True 1941.0 1941 89.5670 626 2167 1 chr2A.!!$R1 1541
12 TraesCS2D01G053700 chr2A 23190284 23191132 848 False 904.0 904 86.3690 626 1468 1 chr2A.!!$F4 842
13 TraesCS2D01G053700 chr2A 22664790 22665525 735 False 793.0 793 86.7750 626 1335 1 chr2A.!!$F3 709
14 TraesCS2D01G053700 chr2B 34453445 34455114 1669 False 1712.0 1712 85.5630 502 2161 1 chr2B.!!$F1 1659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 218 0.032267 GGTGCCGCTAGATGGTACTC 59.968 60.0 17.75 8.25 41.31 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2184 2475 0.038343 TTACGAACCGGCGCTAAAGT 60.038 50.0 7.64 3.16 33.86 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.735694 GCATGTCCATTTAATTAACCGAGCAT 60.736 38.462 0.00 0.00 0.00 3.79
38 39 8.514594 CATGTCCATTTAATTAACCGAGCATAT 58.485 33.333 0.00 0.00 0.00 1.78
52 53 6.946340 ACCGAGCATATTGTGGATTATATGA 58.054 36.000 0.00 0.00 37.04 2.15
54 55 6.018425 CCGAGCATATTGTGGATTATATGAGC 60.018 42.308 0.00 0.00 37.04 4.26
89 90 3.055385 GGTGATACCAGCAGACCTTACAA 60.055 47.826 0.00 0.00 40.34 2.41
96 97 4.184629 CCAGCAGACCTTACAATGTAGAC 58.815 47.826 0.00 0.00 0.00 2.59
99 100 5.521735 CAGCAGACCTTACAATGTAGACATC 59.478 44.000 0.00 0.00 35.10 3.06
104 105 8.251026 CAGACCTTACAATGTAGACATCAAGTA 58.749 37.037 0.00 0.00 35.10 2.24
108 109 9.823647 CCTTACAATGTAGACATCAAGTATTCT 57.176 33.333 0.00 0.00 35.10 2.40
134 135 8.990163 AGGTTAAAGGAAAATCAGAAGTAACA 57.010 30.769 0.00 0.00 0.00 2.41
135 136 8.847196 AGGTTAAAGGAAAATCAGAAGTAACAC 58.153 33.333 0.00 0.00 0.00 3.32
136 137 8.847196 GGTTAAAGGAAAATCAGAAGTAACACT 58.153 33.333 0.00 0.00 0.00 3.55
139 140 7.981102 AAGGAAAATCAGAAGTAACACTACC 57.019 36.000 0.00 0.00 0.00 3.18
140 141 7.074653 AGGAAAATCAGAAGTAACACTACCA 57.925 36.000 0.00 0.00 0.00 3.25
141 142 7.514721 AGGAAAATCAGAAGTAACACTACCAA 58.485 34.615 0.00 0.00 0.00 3.67
142 143 8.164070 AGGAAAATCAGAAGTAACACTACCAAT 58.836 33.333 0.00 0.00 0.00 3.16
143 144 8.237267 GGAAAATCAGAAGTAACACTACCAATG 58.763 37.037 0.00 0.00 0.00 2.82
144 145 8.691661 AAAATCAGAAGTAACACTACCAATGT 57.308 30.769 0.00 0.00 0.00 2.71
145 146 8.691661 AAATCAGAAGTAACACTACCAATGTT 57.308 30.769 0.00 0.00 42.78 2.71
146 147 8.691661 AATCAGAAGTAACACTACCAATGTTT 57.308 30.769 0.00 0.00 40.68 2.83
147 148 8.691661 ATCAGAAGTAACACTACCAATGTTTT 57.308 30.769 0.00 0.00 40.68 2.43
148 149 9.787435 ATCAGAAGTAACACTACCAATGTTTTA 57.213 29.630 0.00 0.00 40.68 1.52
149 150 9.616156 TCAGAAGTAACACTACCAATGTTTTAA 57.384 29.630 0.00 0.00 40.68 1.52
155 156 9.563898 GTAACACTACCAATGTTTTAAATAGCC 57.436 33.333 0.00 0.00 40.68 3.93
156 157 6.848451 ACACTACCAATGTTTTAAATAGCCG 58.152 36.000 0.00 0.00 0.00 5.52
157 158 6.127842 ACACTACCAATGTTTTAAATAGCCGG 60.128 38.462 0.00 0.00 0.00 6.13
158 159 4.118093 ACCAATGTTTTAAATAGCCGGC 57.882 40.909 21.89 21.89 0.00 6.13
159 160 3.767131 ACCAATGTTTTAAATAGCCGGCT 59.233 39.130 34.85 34.85 0.00 5.52
160 161 4.951094 ACCAATGTTTTAAATAGCCGGCTA 59.049 37.500 36.88 36.88 0.00 3.93
161 162 5.596772 ACCAATGTTTTAAATAGCCGGCTAT 59.403 36.000 37.79 37.79 40.63 2.97
162 163 6.773685 ACCAATGTTTTAAATAGCCGGCTATA 59.226 34.615 41.53 28.18 38.20 1.31
163 164 7.040686 ACCAATGTTTTAAATAGCCGGCTATAG 60.041 37.037 41.53 22.20 38.20 1.31
164 165 5.934935 TGTTTTAAATAGCCGGCTATAGC 57.065 39.130 41.53 29.25 38.20 2.97
176 177 2.194460 CTATAGCCCCGCTCTAGCC 58.806 63.158 0.00 0.00 40.44 3.93
177 178 0.323908 CTATAGCCCCGCTCTAGCCT 60.324 60.000 0.00 0.00 40.44 4.58
178 179 0.323542 TATAGCCCCGCTCTAGCCTC 60.324 60.000 0.00 0.00 40.44 4.70
179 180 3.997057 TATAGCCCCGCTCTAGCCTCG 62.997 61.905 0.00 0.00 40.44 4.63
182 183 2.594882 CCCGCTCTAGCCTCGCTA 60.595 66.667 0.00 0.00 40.44 4.26
183 184 1.974343 CCCGCTCTAGCCTCGCTAT 60.974 63.158 0.00 0.00 40.54 2.97
184 185 0.677098 CCCGCTCTAGCCTCGCTATA 60.677 60.000 0.00 0.00 40.54 1.31
185 186 0.730265 CCGCTCTAGCCTCGCTATAG 59.270 60.000 0.00 0.00 40.54 1.31
190 191 4.513198 CTCTAGCCTCGCTATAGCTTTT 57.487 45.455 21.98 6.30 40.54 2.27
191 192 4.877282 CTCTAGCCTCGCTATAGCTTTTT 58.123 43.478 21.98 6.95 40.54 1.94
192 193 4.621991 TCTAGCCTCGCTATAGCTTTTTG 58.378 43.478 21.98 6.69 40.54 2.44
193 194 3.543680 AGCCTCGCTATAGCTTTTTGA 57.456 42.857 21.98 10.60 36.99 2.69
194 195 4.078639 AGCCTCGCTATAGCTTTTTGAT 57.921 40.909 21.98 2.76 36.99 2.57
195 196 4.061596 AGCCTCGCTATAGCTTTTTGATC 58.938 43.478 21.98 6.92 36.99 2.92
196 197 3.809832 GCCTCGCTATAGCTTTTTGATCA 59.190 43.478 21.98 0.00 39.32 2.92
197 198 4.084118 GCCTCGCTATAGCTTTTTGATCAG 60.084 45.833 21.98 3.12 39.32 2.90
198 199 4.450419 CCTCGCTATAGCTTTTTGATCAGG 59.550 45.833 21.98 8.97 39.32 3.86
199 200 4.380531 TCGCTATAGCTTTTTGATCAGGG 58.619 43.478 21.98 2.43 39.32 4.45
200 201 4.130118 CGCTATAGCTTTTTGATCAGGGT 58.870 43.478 21.98 0.00 39.32 4.34
201 202 4.024556 CGCTATAGCTTTTTGATCAGGGTG 60.025 45.833 21.98 0.00 39.32 4.61
202 203 4.261363 GCTATAGCTTTTTGATCAGGGTGC 60.261 45.833 17.75 0.20 38.21 5.01
203 204 1.260544 AGCTTTTTGATCAGGGTGCC 58.739 50.000 0.00 0.00 0.00 5.01
204 205 0.109132 GCTTTTTGATCAGGGTGCCG 60.109 55.000 0.00 0.00 0.00 5.69
205 206 0.109132 CTTTTTGATCAGGGTGCCGC 60.109 55.000 0.00 0.00 0.00 6.53
206 207 0.539438 TTTTTGATCAGGGTGCCGCT 60.539 50.000 0.00 0.00 0.00 5.52
207 208 0.326595 TTTTGATCAGGGTGCCGCTA 59.673 50.000 0.00 0.00 0.00 4.26
208 209 0.107703 TTTGATCAGGGTGCCGCTAG 60.108 55.000 0.00 0.00 0.00 3.42
209 210 0.975556 TTGATCAGGGTGCCGCTAGA 60.976 55.000 0.00 0.00 0.00 2.43
210 211 0.760567 TGATCAGGGTGCCGCTAGAT 60.761 55.000 0.00 0.00 0.00 1.98
211 212 0.320247 GATCAGGGTGCCGCTAGATG 60.320 60.000 0.00 0.00 0.00 2.90
212 213 1.762522 ATCAGGGTGCCGCTAGATGG 61.763 60.000 0.00 0.00 0.00 3.51
213 214 2.365635 AGGGTGCCGCTAGATGGT 60.366 61.111 0.00 0.00 0.00 3.55
214 215 1.075525 AGGGTGCCGCTAGATGGTA 60.076 57.895 0.00 0.00 0.00 3.25
215 216 1.069258 GGGTGCCGCTAGATGGTAC 59.931 63.158 12.34 12.34 40.89 3.34
216 217 1.400530 GGGTGCCGCTAGATGGTACT 61.401 60.000 17.75 0.00 41.31 2.73
217 218 0.032267 GGTGCCGCTAGATGGTACTC 59.968 60.000 17.75 8.25 41.31 2.59
218 219 0.744874 GTGCCGCTAGATGGTACTCA 59.255 55.000 13.16 0.00 38.84 3.41
219 220 1.341531 GTGCCGCTAGATGGTACTCAT 59.658 52.381 13.16 0.00 38.84 2.90
220 221 1.341209 TGCCGCTAGATGGTACTCATG 59.659 52.381 0.00 0.00 35.97 3.07
221 222 1.341531 GCCGCTAGATGGTACTCATGT 59.658 52.381 0.00 1.44 35.97 3.21
222 223 2.557056 GCCGCTAGATGGTACTCATGTA 59.443 50.000 0.00 2.41 35.97 2.29
223 224 3.612004 GCCGCTAGATGGTACTCATGTAC 60.612 52.174 0.00 0.00 46.06 2.90
235 236 4.548991 ACTCATGTACGTTCGATAGTCC 57.451 45.455 0.00 0.00 37.40 3.85
236 237 3.002042 ACTCATGTACGTTCGATAGTCCG 59.998 47.826 0.00 0.00 36.61 4.79
237 238 2.041966 CATGTACGTTCGATAGTCCGC 58.958 52.381 0.00 0.00 34.58 5.54
238 239 1.372582 TGTACGTTCGATAGTCCGCT 58.627 50.000 0.00 0.00 34.58 5.52
239 240 2.549926 TGTACGTTCGATAGTCCGCTA 58.450 47.619 0.00 0.00 34.58 4.26
240 241 2.935849 TGTACGTTCGATAGTCCGCTAA 59.064 45.455 0.00 0.00 34.58 3.09
241 242 3.561310 TGTACGTTCGATAGTCCGCTAAT 59.439 43.478 0.00 0.00 34.58 1.73
242 243 4.749598 TGTACGTTCGATAGTCCGCTAATA 59.250 41.667 0.00 0.00 34.58 0.98
243 244 4.401525 ACGTTCGATAGTCCGCTAATAG 57.598 45.455 0.00 0.00 34.58 1.73
244 245 3.162068 CGTTCGATAGTCCGCTAATAGC 58.838 50.000 1.41 1.41 35.88 2.97
245 246 3.500014 GTTCGATAGTCCGCTAATAGCC 58.500 50.000 6.69 0.00 35.84 3.93
246 247 1.736126 TCGATAGTCCGCTAATAGCCG 59.264 52.381 6.69 0.08 35.84 5.52
247 248 1.202154 CGATAGTCCGCTAATAGCCGG 60.202 57.143 6.69 11.13 38.18 6.13
248 249 0.531200 ATAGTCCGCTAATAGCCGGC 59.469 55.000 21.89 21.89 38.18 6.13
249 250 0.538977 TAGTCCGCTAATAGCCGGCT 60.539 55.000 34.85 34.85 38.18 5.52
250 251 0.538977 AGTCCGCTAATAGCCGGCTA 60.539 55.000 36.88 36.88 38.18 3.93
251 252 0.531200 GTCCGCTAATAGCCGGCTAT 59.469 55.000 37.79 37.79 38.18 2.97
252 253 1.747355 GTCCGCTAATAGCCGGCTATA 59.253 52.381 41.53 28.60 38.18 1.31
253 254 2.022195 TCCGCTAATAGCCGGCTATAG 58.978 52.381 41.53 34.37 38.18 1.31
254 255 1.536284 CCGCTAATAGCCGGCTATAGC 60.536 57.143 41.53 38.64 38.18 2.97
255 256 1.536284 CGCTAATAGCCGGCTATAGCC 60.536 57.143 38.13 30.82 46.45 3.93
274 275 7.976135 ATAGCCTGCTATAGTTGATTTGAAG 57.024 36.000 9.85 0.00 37.47 3.02
275 276 5.128919 AGCCTGCTATAGTTGATTTGAAGG 58.871 41.667 0.84 0.00 0.00 3.46
276 277 5.104360 AGCCTGCTATAGTTGATTTGAAGGA 60.104 40.000 0.84 0.00 0.00 3.36
277 278 5.008118 GCCTGCTATAGTTGATTTGAAGGAC 59.992 44.000 0.84 0.00 0.00 3.85
278 279 5.529060 CCTGCTATAGTTGATTTGAAGGACC 59.471 44.000 0.84 0.00 0.00 4.46
279 280 5.116180 TGCTATAGTTGATTTGAAGGACCG 58.884 41.667 0.84 0.00 0.00 4.79
280 281 5.116882 GCTATAGTTGATTTGAAGGACCGT 58.883 41.667 0.84 0.00 0.00 4.83
281 282 5.234543 GCTATAGTTGATTTGAAGGACCGTC 59.765 44.000 0.00 0.00 0.00 4.79
282 283 3.485463 AGTTGATTTGAAGGACCGTCA 57.515 42.857 5.96 5.96 0.00 4.35
283 284 3.139077 AGTTGATTTGAAGGACCGTCAC 58.861 45.455 9.87 0.00 0.00 3.67
284 285 3.139077 GTTGATTTGAAGGACCGTCACT 58.861 45.455 9.87 0.54 0.00 3.41
285 286 4.039973 AGTTGATTTGAAGGACCGTCACTA 59.960 41.667 9.87 1.95 0.00 2.74
286 287 4.819105 TGATTTGAAGGACCGTCACTAT 57.181 40.909 9.87 6.75 0.00 2.12
287 288 5.160607 TGATTTGAAGGACCGTCACTATT 57.839 39.130 9.87 0.00 0.00 1.73
288 289 5.556915 TGATTTGAAGGACCGTCACTATTT 58.443 37.500 9.87 0.00 0.00 1.40
289 290 5.411361 TGATTTGAAGGACCGTCACTATTTG 59.589 40.000 9.87 0.00 0.00 2.32
290 291 2.695359 TGAAGGACCGTCACTATTTGC 58.305 47.619 5.96 0.00 0.00 3.68
291 292 2.007608 GAAGGACCGTCACTATTTGCC 58.992 52.381 2.14 0.00 0.00 4.52
292 293 0.981183 AGGACCGTCACTATTTGCCA 59.019 50.000 0.00 0.00 0.00 4.92
293 294 1.559682 AGGACCGTCACTATTTGCCAT 59.440 47.619 0.00 0.00 0.00 4.40
294 295 2.769663 AGGACCGTCACTATTTGCCATA 59.230 45.455 0.00 0.00 0.00 2.74
295 296 3.391296 AGGACCGTCACTATTTGCCATAT 59.609 43.478 0.00 0.00 0.00 1.78
296 297 3.746492 GGACCGTCACTATTTGCCATATC 59.254 47.826 0.00 0.00 0.00 1.63
297 298 3.740115 ACCGTCACTATTTGCCATATCC 58.260 45.455 0.00 0.00 0.00 2.59
298 299 3.074412 CCGTCACTATTTGCCATATCCC 58.926 50.000 0.00 0.00 0.00 3.85
299 300 2.736721 CGTCACTATTTGCCATATCCCG 59.263 50.000 0.00 0.00 0.00 5.14
300 301 2.484264 GTCACTATTTGCCATATCCCGC 59.516 50.000 0.00 0.00 0.00 6.13
301 302 2.371841 TCACTATTTGCCATATCCCGCT 59.628 45.455 0.00 0.00 0.00 5.52
302 303 3.580895 TCACTATTTGCCATATCCCGCTA 59.419 43.478 0.00 0.00 0.00 4.26
303 304 4.225042 TCACTATTTGCCATATCCCGCTAT 59.775 41.667 0.00 0.00 0.00 2.97
304 305 4.943705 CACTATTTGCCATATCCCGCTATT 59.056 41.667 0.00 0.00 0.00 1.73
305 306 5.415701 CACTATTTGCCATATCCCGCTATTT 59.584 40.000 0.00 0.00 0.00 1.40
306 307 6.597672 CACTATTTGCCATATCCCGCTATTTA 59.402 38.462 0.00 0.00 0.00 1.40
307 308 7.120579 CACTATTTGCCATATCCCGCTATTTAA 59.879 37.037 0.00 0.00 0.00 1.52
308 309 6.909550 ATTTGCCATATCCCGCTATTTAAA 57.090 33.333 0.00 0.00 0.00 1.52
309 310 6.716934 TTTGCCATATCCCGCTATTTAAAA 57.283 33.333 0.00 0.00 0.00 1.52
310 311 5.699097 TGCCATATCCCGCTATTTAAAAC 57.301 39.130 0.00 0.00 0.00 2.43
311 312 5.133941 TGCCATATCCCGCTATTTAAAACA 58.866 37.500 0.00 0.00 0.00 2.83
312 313 5.772672 TGCCATATCCCGCTATTTAAAACAT 59.227 36.000 0.00 0.00 0.00 2.71
313 314 6.266558 TGCCATATCCCGCTATTTAAAACATT 59.733 34.615 0.00 0.00 0.00 2.71
314 315 6.586082 GCCATATCCCGCTATTTAAAACATTG 59.414 38.462 0.00 0.00 0.00 2.82
334 335 6.708949 ACATTGAACACTACCGAACTAAATGT 59.291 34.615 0.00 0.00 31.55 2.71
354 355 8.674263 AAATGTGATTGCCTTTAAATTTCACA 57.326 26.923 15.17 15.17 39.41 3.58
359 360 7.226523 GTGATTGCCTTTAAATTTCACAGGTTT 59.773 33.333 0.00 0.00 0.00 3.27
361 362 5.606505 TGCCTTTAAATTTCACAGGTTTCC 58.393 37.500 0.00 0.00 0.00 3.13
364 365 6.223120 CCTTTAAATTTCACAGGTTTCCAGG 58.777 40.000 0.00 0.00 0.00 4.45
369 370 2.341846 TCACAGGTTTCCAGGTGAAC 57.658 50.000 9.62 0.00 37.23 3.18
371 372 2.174639 TCACAGGTTTCCAGGTGAACAT 59.825 45.455 9.62 1.57 37.23 2.71
379 380 3.981071 TCCAGGTGAACATAAGTCCAG 57.019 47.619 0.00 0.00 0.00 3.86
386 387 6.758886 CAGGTGAACATAAGTCCAGTTCTATC 59.241 42.308 0.00 0.00 41.56 2.08
387 388 6.049790 GGTGAACATAAGTCCAGTTCTATCC 58.950 44.000 0.00 0.00 41.56 2.59
388 389 6.049790 GTGAACATAAGTCCAGTTCTATCCC 58.950 44.000 0.00 0.00 41.56 3.85
398 399 6.381994 AGTCCAGTTCTATCCCGTTTTATACA 59.618 38.462 0.00 0.00 0.00 2.29
399 400 7.070821 AGTCCAGTTCTATCCCGTTTTATACAT 59.929 37.037 0.00 0.00 0.00 2.29
400 401 7.384387 GTCCAGTTCTATCCCGTTTTATACATC 59.616 40.741 0.00 0.00 0.00 3.06
402 403 7.931948 CCAGTTCTATCCCGTTTTATACATCTT 59.068 37.037 0.00 0.00 0.00 2.40
403 404 9.976511 CAGTTCTATCCCGTTTTATACATCTTA 57.023 33.333 0.00 0.00 0.00 2.10
433 434 6.591750 TTCCTTCTTTCCTACTAGACTGTG 57.408 41.667 0.00 0.00 0.00 3.66
434 435 5.888901 TCCTTCTTTCCTACTAGACTGTGA 58.111 41.667 0.00 0.00 0.00 3.58
436 437 5.393678 CCTTCTTTCCTACTAGACTGTGAGC 60.394 48.000 0.00 0.00 0.00 4.26
437 438 4.663334 TCTTTCCTACTAGACTGTGAGCA 58.337 43.478 0.00 0.00 0.00 4.26
438 439 5.077564 TCTTTCCTACTAGACTGTGAGCAA 58.922 41.667 0.00 0.00 0.00 3.91
440 441 5.801531 TTCCTACTAGACTGTGAGCAAAA 57.198 39.130 0.00 0.00 0.00 2.44
442 443 5.724328 TCCTACTAGACTGTGAGCAAAATG 58.276 41.667 0.00 0.00 0.00 2.32
443 444 4.331168 CCTACTAGACTGTGAGCAAAATGC 59.669 45.833 0.00 0.00 45.46 3.56
456 486 3.244156 GCAAAATGCAACATGATCGTGA 58.756 40.909 21.75 0.00 44.26 4.35
458 488 4.907279 GCAAAATGCAACATGATCGTGAGA 60.907 41.667 21.75 2.58 44.26 3.27
459 489 6.350727 GCAAAATGCAACATGATCGTGAGAA 61.351 40.000 21.75 8.43 43.80 2.87
479 509 0.914417 AGGGAATTTCAGGGCCGAGA 60.914 55.000 0.00 0.00 0.00 4.04
480 510 0.034477 GGGAATTTCAGGGCCGAGAA 60.034 55.000 9.90 9.90 0.00 2.87
481 511 1.615919 GGGAATTTCAGGGCCGAGAAA 60.616 52.381 23.09 23.09 38.04 2.52
483 513 2.437413 GAATTTCAGGGCCGAGAAACT 58.563 47.619 23.25 16.11 36.65 2.66
484 514 1.826385 ATTTCAGGGCCGAGAAACTG 58.174 50.000 23.25 10.17 36.65 3.16
485 515 0.762418 TTTCAGGGCCGAGAAACTGA 59.238 50.000 18.97 9.59 38.12 3.41
486 516 0.321671 TTCAGGGCCGAGAAACTGAG 59.678 55.000 11.29 0.00 40.63 3.35
488 518 1.915769 AGGGCCGAGAAACTGAGCT 60.916 57.895 0.00 0.00 0.00 4.09
489 519 1.003233 GGGCCGAGAAACTGAGCTT 60.003 57.895 0.00 0.00 0.00 3.74
490 520 1.021920 GGGCCGAGAAACTGAGCTTC 61.022 60.000 0.00 0.00 0.00 3.86
491 521 1.355066 GGCCGAGAAACTGAGCTTCG 61.355 60.000 0.00 0.00 0.00 3.79
492 522 1.355066 GCCGAGAAACTGAGCTTCGG 61.355 60.000 14.90 14.90 41.58 4.30
493 523 0.243907 CCGAGAAACTGAGCTTCGGA 59.756 55.000 14.20 0.00 41.22 4.55
494 524 1.336887 CCGAGAAACTGAGCTTCGGAA 60.337 52.381 14.20 0.00 41.22 4.30
496 526 2.155924 CGAGAAACTGAGCTTCGGAAAC 59.844 50.000 0.00 0.00 0.00 2.78
499 529 3.499918 AGAAACTGAGCTTCGGAAACATG 59.500 43.478 0.00 0.00 0.00 3.21
500 530 2.550830 ACTGAGCTTCGGAAACATGT 57.449 45.000 0.00 0.00 0.00 3.21
504 713 3.325870 TGAGCTTCGGAAACATGTACAG 58.674 45.455 0.00 0.00 0.00 2.74
515 724 5.334414 GGAAACATGTACAGCTCTTGTTGAG 60.334 44.000 11.48 0.00 45.33 3.02
517 726 5.468540 ACATGTACAGCTCTTGTTGAGTA 57.531 39.130 0.00 0.00 44.41 2.59
518 727 5.853936 ACATGTACAGCTCTTGTTGAGTAA 58.146 37.500 0.00 0.00 44.41 2.24
574 787 3.144506 CAGGCAGGATATTCATGTCCAC 58.855 50.000 5.47 0.00 40.20 4.02
578 791 3.812053 GCAGGATATTCATGTCCACACTC 59.188 47.826 5.47 0.00 40.20 3.51
579 792 4.384056 CAGGATATTCATGTCCACACTCC 58.616 47.826 5.47 0.00 40.20 3.85
592 805 2.221169 CACACTCCAGCAAGCAGTTAA 58.779 47.619 0.00 0.00 0.00 2.01
615 828 7.961325 AATTGCTTATTTTGTACAAACTGGG 57.039 32.000 20.43 12.67 0.00 4.45
616 829 4.877282 TGCTTATTTTGTACAAACTGGGC 58.123 39.130 20.43 20.23 0.00 5.36
617 830 3.917985 GCTTATTTTGTACAAACTGGGCG 59.082 43.478 20.43 8.45 0.00 6.13
618 831 4.557895 GCTTATTTTGTACAAACTGGGCGT 60.558 41.667 20.43 4.27 0.00 5.68
619 832 3.636282 ATTTTGTACAAACTGGGCGTC 57.364 42.857 20.43 0.00 0.00 5.19
620 833 2.039818 TTTGTACAAACTGGGCGTCA 57.960 45.000 17.01 0.00 0.00 4.35
621 834 1.301423 TTGTACAAACTGGGCGTCAC 58.699 50.000 5.64 0.00 0.00 3.67
622 835 0.876777 TGTACAAACTGGGCGTCACG 60.877 55.000 0.00 0.00 0.00 4.35
623 836 0.877213 GTACAAACTGGGCGTCACGT 60.877 55.000 0.00 0.00 0.00 4.49
648 891 4.024809 CACGGTCCTCTTCTTTCTTTCAAC 60.025 45.833 0.00 0.00 0.00 3.18
689 948 2.690497 CACTCAGATGTACACTCCCGAT 59.310 50.000 0.00 0.00 0.00 4.18
703 962 3.181454 ACTCCCGATATAAACAAGCAGGG 60.181 47.826 0.00 0.00 38.95 4.45
714 973 2.200081 ACAAGCAGGGGTCACTATCAT 58.800 47.619 0.00 0.00 0.00 2.45
716 975 3.780294 ACAAGCAGGGGTCACTATCATAA 59.220 43.478 0.00 0.00 0.00 1.90
719 978 3.643792 AGCAGGGGTCACTATCATAAGTC 59.356 47.826 0.00 0.00 0.00 3.01
720 979 3.643792 GCAGGGGTCACTATCATAAGTCT 59.356 47.826 0.00 0.00 0.00 3.24
722 981 5.047660 GCAGGGGTCACTATCATAAGTCTAG 60.048 48.000 0.00 0.00 0.00 2.43
752 1011 3.997021 ACTTCTTTGTTCTGCCGTATCAG 59.003 43.478 0.00 0.00 35.46 2.90
753 1012 2.346803 TCTTTGTTCTGCCGTATCAGC 58.653 47.619 0.00 0.00 34.19 4.26
779 1038 1.754234 AATCTGGCCGGCCAATCAC 60.754 57.895 45.17 20.29 46.63 3.06
800 1059 4.969395 CACATGTGCGCGTCATTTTTATAT 59.031 37.500 13.94 0.00 0.00 0.86
803 1062 5.416862 TGTGCGCGTCATTTTTATATCAT 57.583 34.783 8.43 0.00 0.00 2.45
804 1063 5.439828 TGTGCGCGTCATTTTTATATCATC 58.560 37.500 8.43 0.00 0.00 2.92
805 1064 5.236263 TGTGCGCGTCATTTTTATATCATCT 59.764 36.000 8.43 0.00 0.00 2.90
807 1066 5.082059 GCGCGTCATTTTTATATCATCTGG 58.918 41.667 8.43 0.00 0.00 3.86
809 1068 5.393962 GCGTCATTTTTATATCATCTGGCC 58.606 41.667 0.00 0.00 0.00 5.36
811 1070 5.390885 CGTCATTTTTATATCATCTGGCCGG 60.391 44.000 4.71 4.71 0.00 6.13
812 1071 5.705441 GTCATTTTTATATCATCTGGCCGGA 59.295 40.000 18.80 18.80 0.00 5.14
818 1077 2.257409 ATCATCTGGCCGGACACCAC 62.257 60.000 18.90 0.00 32.49 4.16
820 1079 3.254024 ATCTGGCCGGACACCACAC 62.254 63.158 18.90 0.00 32.49 3.82
856 1116 3.199727 ACAAGCCCTTTTCCACAAACAAT 59.800 39.130 0.00 0.00 0.00 2.71
879 1143 2.751259 TCGTACAAGCACCGTATCTCTT 59.249 45.455 0.00 0.00 0.00 2.85
880 1144 3.106672 CGTACAAGCACCGTATCTCTTC 58.893 50.000 0.00 0.00 0.00 2.87
881 1145 3.427098 CGTACAAGCACCGTATCTCTTCA 60.427 47.826 0.00 0.00 0.00 3.02
904 1191 9.442062 TTCATCTCCTATTTATACCACCAAGTA 57.558 33.333 0.00 0.00 0.00 2.24
908 1195 7.070322 TCTCCTATTTATACCACCAAGTACCAC 59.930 40.741 0.00 0.00 0.00 4.16
932 1219 4.439563 CCAACAAACCAGACCAAAGTACAC 60.440 45.833 0.00 0.00 0.00 2.90
934 1221 3.945285 ACAAACCAGACCAAAGTACACAG 59.055 43.478 0.00 0.00 0.00 3.66
982 1272 2.837532 TGCAGTACTGTCATTGCAGA 57.162 45.000 23.44 0.00 41.23 4.26
986 1276 2.283617 CAGTACTGTCATTGCAGATCGC 59.716 50.000 15.06 3.07 39.62 4.58
1013 1303 1.064906 ACTGAAGATGGCCATCCACAG 60.065 52.381 39.04 39.04 46.92 3.66
1030 1320 3.804193 GGGCTTCGCTTCTTGCCG 61.804 66.667 0.00 0.00 45.75 5.69
1036 1326 1.816863 TTCGCTTCTTGCCGTCCTCT 61.817 55.000 0.00 0.00 38.78 3.69
1044 1334 0.537143 TTGCCGTCCTCTGTTGCATT 60.537 50.000 0.00 0.00 0.00 3.56
1068 1358 1.995484 CTCTGTGGTACTGTCATTGCG 59.005 52.381 0.00 0.00 0.00 4.85
1078 1368 1.738099 GTCATTGCGGCTCGTGAGT 60.738 57.895 0.00 0.00 0.00 3.41
1085 1375 2.372690 CGGCTCGTGAGTTGAACGG 61.373 63.158 0.00 0.00 41.34 4.44
1131 1421 2.497675 TGAGAACTGGATGGCTCAGTAC 59.502 50.000 8.58 0.00 43.82 2.73
1133 1423 1.476891 GAACTGGATGGCTCAGTACGA 59.523 52.381 8.58 0.00 43.82 3.43
1194 1484 3.383185 TCGAGGTTTTCAAAGCCAATGTT 59.617 39.130 5.73 0.00 37.11 2.71
1242 1532 0.687354 ATCACAAGTTCTGGCTCGGT 59.313 50.000 0.00 0.00 0.00 4.69
1300 1590 3.230743 AGACAACCAACACAAACAAGC 57.769 42.857 0.00 0.00 0.00 4.01
1320 1610 2.922335 GCGGTTCAAAGCAAACTCCATC 60.922 50.000 0.00 0.00 0.00 3.51
1323 1613 3.569701 GGTTCAAAGCAAACTCCATCAGA 59.430 43.478 0.00 0.00 0.00 3.27
1336 1626 4.180057 CTCCATCAGAGTTCTTTCTTCCG 58.820 47.826 0.00 0.00 37.87 4.30
1337 1627 3.055819 TCCATCAGAGTTCTTTCTTCCGG 60.056 47.826 0.00 0.00 0.00 5.14
1338 1628 3.265791 CATCAGAGTTCTTTCTTCCGGG 58.734 50.000 0.00 0.00 0.00 5.73
1339 1629 2.326428 TCAGAGTTCTTTCTTCCGGGT 58.674 47.619 0.00 0.00 0.00 5.28
1340 1630 2.704065 TCAGAGTTCTTTCTTCCGGGTT 59.296 45.455 0.00 0.00 0.00 4.11
1341 1631 3.067833 CAGAGTTCTTTCTTCCGGGTTC 58.932 50.000 0.00 0.00 0.00 3.62
1354 1644 2.152016 CCGGGTTCAGTTCTTTCTTCC 58.848 52.381 0.00 0.00 0.00 3.46
1357 1647 2.152016 GGTTCAGTTCTTTCTTCCGGG 58.848 52.381 0.00 0.00 0.00 5.73
1379 1669 5.586643 GGGTTCAGGTATGAGAATTTGAGTC 59.413 44.000 0.00 0.00 36.61 3.36
1461 1751 1.071699 TCAAGGCCAGTGTGGTAAGTC 59.928 52.381 5.01 0.00 40.46 3.01
1493 1783 3.822167 TGTGATGCATTGCCTATATGTGG 59.178 43.478 6.12 0.00 0.00 4.17
1503 1793 9.573133 GCATTGCCTATATGTGGTAATATTTTC 57.427 33.333 10.75 0.00 37.71 2.29
1542 1832 5.824904 CAGCACAATTATTTCTAGGCTGT 57.175 39.130 0.00 0.00 41.76 4.40
1553 1843 1.098050 CTAGGCTGTTGTTGGGCATC 58.902 55.000 0.00 0.00 0.00 3.91
1596 1886 5.598417 AGAGGGCATTGTAAAACTGAAAACT 59.402 36.000 0.00 0.00 0.00 2.66
1733 2023 3.039011 GAGGCCTTACTATGGAGTCCAA 58.961 50.000 17.71 4.93 36.95 3.53
1745 2035 7.488205 ACTATGGAGTCCAACTACCCATATAT 58.512 38.462 17.71 0.00 38.67 0.86
1878 2169 1.487976 CCCATGTCTGTAGCTGTGGAT 59.512 52.381 0.00 0.00 0.00 3.41
1917 2208 2.092914 CCAATTCTACTCTGGTGGGGTC 60.093 54.545 0.00 0.00 0.00 4.46
1924 2215 1.078823 ACTCTGGTGGGGTCATGACTA 59.921 52.381 24.50 9.51 0.00 2.59
1925 2216 1.759445 CTCTGGTGGGGTCATGACTAG 59.241 57.143 24.50 13.10 0.00 2.57
1926 2217 0.179000 CTGGTGGGGTCATGACTAGC 59.821 60.000 24.50 19.20 0.00 3.42
1927 2218 0.252696 TGGTGGGGTCATGACTAGCT 60.253 55.000 24.50 0.00 0.00 3.32
1928 2219 1.007842 TGGTGGGGTCATGACTAGCTA 59.992 52.381 24.50 8.61 0.00 3.32
2021 2312 7.542025 AAGCTATTGGTTGATGAAGAATTCAC 58.458 34.615 8.44 2.04 44.63 3.18
2059 2350 4.202223 GGCGAAGATGGGTACTTGAGAATA 60.202 45.833 0.00 0.00 0.00 1.75
2131 2422 5.766590 CCTTCTTACCCCACAAAATAGGAT 58.233 41.667 0.00 0.00 0.00 3.24
2137 2428 3.202151 ACCCCACAAAATAGGATGATCGT 59.798 43.478 0.00 0.00 0.00 3.73
2161 2452 5.597594 TCAAATGCCACCTAATCATGCATAA 59.402 36.000 0.00 0.00 41.49 1.90
2162 2453 6.268158 TCAAATGCCACCTAATCATGCATAAT 59.732 34.615 0.00 0.00 41.49 1.28
2167 2458 5.563475 GCCACCTAATCATGCATAATCACAC 60.563 44.000 0.00 0.00 0.00 3.82
2168 2459 5.532032 CCACCTAATCATGCATAATCACACA 59.468 40.000 0.00 0.00 0.00 3.72
2169 2460 6.432936 CACCTAATCATGCATAATCACACAC 58.567 40.000 0.00 0.00 0.00 3.82
2170 2461 6.261603 CACCTAATCATGCATAATCACACACT 59.738 38.462 0.00 0.00 0.00 3.55
2171 2462 7.442062 CACCTAATCATGCATAATCACACACTA 59.558 37.037 0.00 0.00 0.00 2.74
2172 2463 7.442364 ACCTAATCATGCATAATCACACACTAC 59.558 37.037 0.00 0.00 0.00 2.73
2173 2464 7.658982 CCTAATCATGCATAATCACACACTACT 59.341 37.037 0.00 0.00 0.00 2.57
2174 2465 6.856135 ATCATGCATAATCACACACTACTG 57.144 37.500 0.00 0.00 0.00 2.74
2175 2466 4.571984 TCATGCATAATCACACACTACTGC 59.428 41.667 0.00 0.00 0.00 4.40
2176 2467 3.936564 TGCATAATCACACACTACTGCA 58.063 40.909 0.00 0.00 36.15 4.41
2177 2468 3.934579 TGCATAATCACACACTACTGCAG 59.065 43.478 13.48 13.48 33.80 4.41
2178 2469 4.183865 GCATAATCACACACTACTGCAGA 58.816 43.478 23.35 2.95 0.00 4.26
2179 2470 4.631377 GCATAATCACACACTACTGCAGAA 59.369 41.667 23.35 0.00 0.00 3.02
2180 2471 5.446473 GCATAATCACACACTACTGCAGAAC 60.446 44.000 23.35 0.00 0.00 3.01
2181 2472 2.526304 TCACACACTACTGCAGAACC 57.474 50.000 23.35 0.00 0.00 3.62
2182 2473 1.139989 CACACACTACTGCAGAACCG 58.860 55.000 23.35 8.54 0.00 4.44
2183 2474 0.033504 ACACACTACTGCAGAACCGG 59.966 55.000 23.35 0.00 0.00 5.28
2184 2475 0.317160 CACACTACTGCAGAACCGGA 59.683 55.000 23.35 0.00 0.00 5.14
2185 2476 0.317479 ACACTACTGCAGAACCGGAC 59.683 55.000 23.35 0.99 0.00 4.79
2186 2477 0.603569 CACTACTGCAGAACCGGACT 59.396 55.000 23.35 3.91 0.00 3.85
2187 2478 1.000955 CACTACTGCAGAACCGGACTT 59.999 52.381 23.35 0.00 0.00 3.01
2188 2479 1.692519 ACTACTGCAGAACCGGACTTT 59.307 47.619 23.35 0.00 0.00 2.66
2189 2480 2.895404 ACTACTGCAGAACCGGACTTTA 59.105 45.455 23.35 0.00 0.00 1.85
2190 2481 2.457366 ACTGCAGAACCGGACTTTAG 57.543 50.000 23.35 9.79 0.00 1.85
2191 2482 1.079503 CTGCAGAACCGGACTTTAGC 58.920 55.000 9.46 7.78 0.00 3.09
2192 2483 0.669318 TGCAGAACCGGACTTTAGCG 60.669 55.000 9.46 0.00 0.00 4.26
2193 2484 1.967597 GCAGAACCGGACTTTAGCGC 61.968 60.000 9.46 0.00 0.00 5.92
2194 2485 1.079336 AGAACCGGACTTTAGCGCC 60.079 57.895 9.46 0.00 0.00 6.53
2195 2486 2.433664 AACCGGACTTTAGCGCCG 60.434 61.111 9.46 0.00 44.42 6.46
2198 2489 2.433664 CGGACTTTAGCGCCGGTT 60.434 61.111 2.29 0.00 41.29 4.44
2199 2490 2.450345 CGGACTTTAGCGCCGGTTC 61.450 63.158 2.29 0.00 41.29 3.62
2200 2491 2.450345 GGACTTTAGCGCCGGTTCG 61.450 63.158 2.29 0.00 0.00 3.95
2201 2492 1.735559 GACTTTAGCGCCGGTTCGT 60.736 57.895 2.29 0.00 0.00 3.85
2202 2493 0.456653 GACTTTAGCGCCGGTTCGTA 60.457 55.000 2.29 0.00 0.00 3.43
2203 2494 0.038343 ACTTTAGCGCCGGTTCGTAA 60.038 50.000 2.29 0.00 0.00 3.18
2204 2495 0.643820 CTTTAGCGCCGGTTCGTAAG 59.356 55.000 2.29 0.00 0.00 2.34
2205 2496 0.737019 TTTAGCGCCGGTTCGTAAGG 60.737 55.000 2.29 0.00 38.47 2.69
2206 2497 2.561549 TTAGCGCCGGTTCGTAAGGG 62.562 60.000 2.29 0.00 38.47 3.95
2209 2500 4.091939 GCCGGTTCGTAAGGGCCT 62.092 66.667 0.00 0.00 39.67 5.19
2210 2501 2.666812 CCGGTTCGTAAGGGCCTT 59.333 61.111 24.44 24.44 38.47 4.35
2211 2502 1.449070 CCGGTTCGTAAGGGCCTTC 60.449 63.158 24.77 13.45 38.47 3.46
2212 2503 1.294138 CGGTTCGTAAGGGCCTTCA 59.706 57.895 24.77 5.11 38.47 3.02
2213 2504 0.739813 CGGTTCGTAAGGGCCTTCAG 60.740 60.000 24.77 17.77 38.47 3.02
2214 2505 0.323957 GGTTCGTAAGGGCCTTCAGT 59.676 55.000 24.77 0.11 38.47 3.41
2215 2506 1.439679 GTTCGTAAGGGCCTTCAGTG 58.560 55.000 24.77 11.17 38.47 3.66
2216 2507 0.321298 TTCGTAAGGGCCTTCAGTGC 60.321 55.000 24.77 8.22 38.47 4.40
2222 2513 3.056328 GGCCTTCAGTGCCGGTTC 61.056 66.667 1.90 0.00 39.48 3.62
2223 2514 2.032681 GCCTTCAGTGCCGGTTCT 59.967 61.111 1.90 0.00 0.00 3.01
2224 2515 2.328099 GCCTTCAGTGCCGGTTCTG 61.328 63.158 17.67 17.67 0.00 3.02
2225 2516 2.328099 CCTTCAGTGCCGGTTCTGC 61.328 63.158 18.55 0.00 0.00 4.26
2226 2517 1.597854 CTTCAGTGCCGGTTCTGCA 60.598 57.895 18.55 10.41 36.12 4.41
2227 2518 1.153066 TTCAGTGCCGGTTCTGCAA 60.153 52.632 18.55 12.66 41.06 4.08
2228 2519 1.444119 TTCAGTGCCGGTTCTGCAAC 61.444 55.000 18.55 1.64 41.06 4.17
2242 2533 2.928416 GCAACCGGCACTAAAGAGT 58.072 52.632 0.00 0.00 43.97 3.24
2255 2546 5.408880 ACTAAAGAGTGGAGACTAAAGCC 57.591 43.478 0.00 0.00 33.41 4.35
2256 2547 3.704800 AAAGAGTGGAGACTAAAGCCC 57.295 47.619 0.00 0.00 30.16 5.19
2257 2548 1.574263 AGAGTGGAGACTAAAGCCCC 58.426 55.000 0.00 0.00 30.16 5.80
2258 2549 0.542333 GAGTGGAGACTAAAGCCCCC 59.458 60.000 0.00 0.00 30.16 5.40
2278 2569 2.995480 CCCCCTTAGTACCGGTTCA 58.005 57.895 15.04 0.00 0.00 3.18
2279 2570 1.503800 CCCCCTTAGTACCGGTTCAT 58.496 55.000 15.04 0.95 0.00 2.57
2280 2571 1.415289 CCCCCTTAGTACCGGTTCATC 59.585 57.143 15.04 1.07 0.00 2.92
2281 2572 2.112998 CCCCTTAGTACCGGTTCATCA 58.887 52.381 15.04 0.00 0.00 3.07
2282 2573 2.159000 CCCCTTAGTACCGGTTCATCAC 60.159 54.545 15.04 3.84 0.00 3.06
2283 2574 2.480759 CCCTTAGTACCGGTTCATCACG 60.481 54.545 15.04 0.00 0.00 4.35
2284 2575 2.424601 CCTTAGTACCGGTTCATCACGA 59.575 50.000 15.04 0.00 0.00 4.35
2285 2576 3.119388 CCTTAGTACCGGTTCATCACGAA 60.119 47.826 15.04 6.09 0.00 3.85
2292 2583 3.115892 TTCATCACGAACCGGCGC 61.116 61.111 0.00 0.00 33.86 6.53
2293 2584 3.583276 TTCATCACGAACCGGCGCT 62.583 57.895 7.64 0.00 33.86 5.92
2294 2585 2.202690 CATCACGAACCGGCGCTA 60.203 61.111 7.64 0.00 33.86 4.26
2295 2586 1.807981 CATCACGAACCGGCGCTAA 60.808 57.895 7.64 0.00 33.86 3.09
2296 2587 1.079681 ATCACGAACCGGCGCTAAA 60.080 52.632 7.64 0.00 33.86 1.85
2297 2588 1.082117 ATCACGAACCGGCGCTAAAG 61.082 55.000 7.64 0.00 33.86 1.85
2298 2589 2.025418 CACGAACCGGCGCTAAAGT 61.025 57.895 7.64 0.00 33.86 2.66
2299 2590 2.025418 ACGAACCGGCGCTAAAGTG 61.025 57.895 7.64 0.00 33.86 3.16
2306 2597 2.561373 GCGCTAAAGTGCCACCAC 59.439 61.111 0.00 0.00 45.15 4.16
2307 2598 2.860293 CGCTAAAGTGCCACCACG 59.140 61.111 0.00 0.00 46.62 4.94
2308 2599 1.959226 CGCTAAAGTGCCACCACGT 60.959 57.895 0.00 0.00 46.62 4.49
2309 2600 1.574428 GCTAAAGTGCCACCACGTG 59.426 57.895 9.08 9.08 46.62 4.49
2342 2633 2.672996 GGGTGCGTGCAGGACATT 60.673 61.111 11.29 0.00 43.57 2.71
2343 2634 1.376683 GGGTGCGTGCAGGACATTA 60.377 57.895 11.29 0.00 43.57 1.90
2344 2635 1.369091 GGGTGCGTGCAGGACATTAG 61.369 60.000 11.29 0.00 43.57 1.73
2345 2636 0.673644 GGTGCGTGCAGGACATTAGT 60.674 55.000 11.29 0.00 43.57 2.24
2346 2637 1.404986 GGTGCGTGCAGGACATTAGTA 60.405 52.381 11.29 0.00 43.57 1.82
2347 2638 1.659098 GTGCGTGCAGGACATTAGTAC 59.341 52.381 11.29 0.00 41.21 2.73
2348 2639 1.287425 GCGTGCAGGACATTAGTACC 58.713 55.000 11.29 0.00 0.00 3.34
2349 2640 1.556564 CGTGCAGGACATTAGTACCG 58.443 55.000 0.00 0.00 0.00 4.02
2350 2641 1.801395 CGTGCAGGACATTAGTACCGG 60.801 57.143 0.00 0.00 0.00 5.28
2351 2642 1.206371 GTGCAGGACATTAGTACCGGT 59.794 52.381 13.98 13.98 0.00 5.28
2352 2643 1.903860 TGCAGGACATTAGTACCGGTT 59.096 47.619 15.04 0.00 0.00 4.44
2353 2644 2.277084 GCAGGACATTAGTACCGGTTG 58.723 52.381 15.04 7.13 0.00 3.77
2354 2645 2.901249 CAGGACATTAGTACCGGTTGG 58.099 52.381 15.04 0.00 42.84 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.887996 TTAAATGGACATGCAAAACTTGATC 57.112 32.000 0.00 0.00 0.00 2.92
1 2 8.851541 AATTAAATGGACATGCAAAACTTGAT 57.148 26.923 0.00 0.00 0.00 2.57
2 3 9.770097 TTAATTAAATGGACATGCAAAACTTGA 57.230 25.926 0.00 0.00 0.00 3.02
3 4 9.810231 GTTAATTAAATGGACATGCAAAACTTG 57.190 29.630 0.00 0.00 0.00 3.16
4 5 8.998377 GGTTAATTAAATGGACATGCAAAACTT 58.002 29.630 0.00 0.00 0.00 2.66
5 6 7.330700 CGGTTAATTAAATGGACATGCAAAACT 59.669 33.333 0.00 0.00 0.00 2.66
6 7 7.329717 TCGGTTAATTAAATGGACATGCAAAAC 59.670 33.333 0.00 0.00 0.00 2.43
7 8 7.378966 TCGGTTAATTAAATGGACATGCAAAA 58.621 30.769 0.00 0.00 0.00 2.44
8 9 6.925211 TCGGTTAATTAAATGGACATGCAAA 58.075 32.000 0.00 0.00 0.00 3.68
9 10 6.516739 TCGGTTAATTAAATGGACATGCAA 57.483 33.333 0.00 0.00 0.00 4.08
10 11 5.449862 GCTCGGTTAATTAAATGGACATGCA 60.450 40.000 0.00 0.00 0.00 3.96
11 12 4.976116 GCTCGGTTAATTAAATGGACATGC 59.024 41.667 0.00 0.00 0.00 4.06
12 13 6.130298 TGCTCGGTTAATTAAATGGACATG 57.870 37.500 0.00 0.00 0.00 3.21
13 14 6.959639 ATGCTCGGTTAATTAAATGGACAT 57.040 33.333 0.00 0.00 0.00 3.06
14 15 8.349245 CAATATGCTCGGTTAATTAAATGGACA 58.651 33.333 0.00 0.00 0.00 4.02
19 20 8.458573 TCCACAATATGCTCGGTTAATTAAAT 57.541 30.769 0.00 0.00 0.00 1.40
20 21 7.867305 TCCACAATATGCTCGGTTAATTAAA 57.133 32.000 0.00 0.00 0.00 1.52
38 39 9.905713 AAAAGAAGTAGCTCATATAATCCACAA 57.094 29.630 0.00 0.00 0.00 3.33
52 53 7.195374 TGGTATCACCATAAAAGAAGTAGCT 57.805 36.000 0.00 0.00 44.79 3.32
117 118 7.739498 TTGGTAGTGTTACTTCTGATTTTCC 57.261 36.000 0.00 0.00 0.00 3.13
118 119 8.784043 ACATTGGTAGTGTTACTTCTGATTTTC 58.216 33.333 0.00 0.00 0.00 2.29
121 122 8.691661 AAACATTGGTAGTGTTACTTCTGATT 57.308 30.769 0.00 0.00 38.76 2.57
122 123 8.691661 AAAACATTGGTAGTGTTACTTCTGAT 57.308 30.769 0.00 0.00 38.76 2.90
131 132 7.309920 CGGCTATTTAAAACATTGGTAGTGTT 58.690 34.615 0.00 0.00 41.28 3.32
132 133 6.127842 CCGGCTATTTAAAACATTGGTAGTGT 60.128 38.462 0.00 0.00 0.00 3.55
133 134 6.262601 CCGGCTATTTAAAACATTGGTAGTG 58.737 40.000 0.00 0.00 0.00 2.74
134 135 5.163591 GCCGGCTATTTAAAACATTGGTAGT 60.164 40.000 22.15 0.00 0.00 2.73
135 136 5.067283 AGCCGGCTATTTAAAACATTGGTAG 59.933 40.000 31.86 0.00 0.00 3.18
136 137 4.951094 AGCCGGCTATTTAAAACATTGGTA 59.049 37.500 31.86 0.00 0.00 3.25
137 138 3.767131 AGCCGGCTATTTAAAACATTGGT 59.233 39.130 31.86 0.00 0.00 3.67
138 139 4.385358 AGCCGGCTATTTAAAACATTGG 57.615 40.909 31.86 0.00 0.00 3.16
139 140 6.801862 GCTATAGCCGGCTATTTAAAACATTG 59.198 38.462 44.65 25.37 39.65 2.82
140 141 6.909909 GCTATAGCCGGCTATTTAAAACATT 58.090 36.000 44.65 25.26 39.65 2.71
141 142 6.496338 GCTATAGCCGGCTATTTAAAACAT 57.504 37.500 44.65 26.89 39.65 2.71
142 143 5.934935 GCTATAGCCGGCTATTTAAAACA 57.065 39.130 44.65 27.89 39.65 2.83
159 160 0.323542 GAGGCTAGAGCGGGGCTATA 60.324 60.000 0.00 0.00 39.88 1.31
160 161 1.608046 GAGGCTAGAGCGGGGCTAT 60.608 63.158 0.00 0.00 39.88 2.97
161 162 2.203509 GAGGCTAGAGCGGGGCTA 60.204 66.667 0.00 0.00 39.88 3.93
164 165 3.997057 TATAGCGAGGCTAGAGCGGGG 62.997 61.905 0.00 0.00 44.66 5.73
165 166 0.677098 TATAGCGAGGCTAGAGCGGG 60.677 60.000 0.00 0.00 44.66 6.13
166 167 0.730265 CTATAGCGAGGCTAGAGCGG 59.270 60.000 6.37 0.00 44.66 5.52
170 171 4.341235 TCAAAAAGCTATAGCGAGGCTAGA 59.659 41.667 18.82 9.58 44.66 2.43
171 172 4.621991 TCAAAAAGCTATAGCGAGGCTAG 58.378 43.478 18.82 7.53 44.66 3.42
172 173 4.665833 TCAAAAAGCTATAGCGAGGCTA 57.334 40.909 18.82 0.00 45.55 3.93
179 180 4.261363 GCACCCTGATCAAAAAGCTATAGC 60.261 45.833 17.33 17.33 42.49 2.97
180 181 4.276926 GGCACCCTGATCAAAAAGCTATAG 59.723 45.833 0.00 0.00 0.00 1.31
181 182 4.207165 GGCACCCTGATCAAAAAGCTATA 58.793 43.478 0.00 0.00 0.00 1.31
182 183 3.026694 GGCACCCTGATCAAAAAGCTAT 58.973 45.455 0.00 0.00 0.00 2.97
183 184 2.446435 GGCACCCTGATCAAAAAGCTA 58.554 47.619 0.00 0.00 0.00 3.32
184 185 1.260544 GGCACCCTGATCAAAAAGCT 58.739 50.000 0.00 0.00 0.00 3.74
185 186 0.109132 CGGCACCCTGATCAAAAAGC 60.109 55.000 0.00 0.00 0.00 3.51
186 187 0.109132 GCGGCACCCTGATCAAAAAG 60.109 55.000 0.00 0.00 0.00 2.27
187 188 0.539438 AGCGGCACCCTGATCAAAAA 60.539 50.000 1.45 0.00 0.00 1.94
188 189 0.326595 TAGCGGCACCCTGATCAAAA 59.673 50.000 1.45 0.00 0.00 2.44
189 190 0.107703 CTAGCGGCACCCTGATCAAA 60.108 55.000 1.45 0.00 0.00 2.69
190 191 0.975556 TCTAGCGGCACCCTGATCAA 60.976 55.000 1.45 0.00 0.00 2.57
191 192 0.760567 ATCTAGCGGCACCCTGATCA 60.761 55.000 1.45 0.00 0.00 2.92
192 193 0.320247 CATCTAGCGGCACCCTGATC 60.320 60.000 1.45 0.00 0.00 2.92
193 194 1.750930 CATCTAGCGGCACCCTGAT 59.249 57.895 1.45 0.00 0.00 2.90
194 195 2.434843 CCATCTAGCGGCACCCTGA 61.435 63.158 1.45 0.00 0.00 3.86
195 196 1.399744 TACCATCTAGCGGCACCCTG 61.400 60.000 1.45 0.00 0.00 4.45
196 197 1.075525 TACCATCTAGCGGCACCCT 60.076 57.895 1.45 0.00 0.00 4.34
197 198 1.069258 GTACCATCTAGCGGCACCC 59.931 63.158 1.45 0.00 0.00 4.61
198 199 0.032267 GAGTACCATCTAGCGGCACC 59.968 60.000 1.45 0.00 0.00 5.01
199 200 0.744874 TGAGTACCATCTAGCGGCAC 59.255 55.000 1.45 0.00 0.00 5.01
200 201 1.341209 CATGAGTACCATCTAGCGGCA 59.659 52.381 1.45 0.00 31.94 5.69
201 202 1.341531 ACATGAGTACCATCTAGCGGC 59.658 52.381 0.00 0.00 31.94 6.53
202 203 3.365064 CGTACATGAGTACCATCTAGCGG 60.365 52.174 0.00 0.00 46.25 5.52
203 204 3.250280 ACGTACATGAGTACCATCTAGCG 59.750 47.826 0.00 0.00 46.25 4.26
204 205 4.832590 ACGTACATGAGTACCATCTAGC 57.167 45.455 0.00 0.00 46.25 3.42
205 206 5.235831 TCGAACGTACATGAGTACCATCTAG 59.764 44.000 0.00 0.00 46.25 2.43
206 207 5.118286 TCGAACGTACATGAGTACCATCTA 58.882 41.667 0.00 0.00 46.25 1.98
207 208 3.943381 TCGAACGTACATGAGTACCATCT 59.057 43.478 0.00 0.00 46.25 2.90
208 209 4.282950 TCGAACGTACATGAGTACCATC 57.717 45.455 0.00 0.00 46.25 3.51
209 210 4.913335 ATCGAACGTACATGAGTACCAT 57.087 40.909 0.00 0.00 46.25 3.55
210 211 4.877823 ACTATCGAACGTACATGAGTACCA 59.122 41.667 0.00 0.00 46.25 3.25
211 212 5.415415 ACTATCGAACGTACATGAGTACC 57.585 43.478 0.00 0.00 46.25 3.34
212 213 5.438972 GGACTATCGAACGTACATGAGTAC 58.561 45.833 0.00 0.00 45.67 2.73
213 214 4.209911 CGGACTATCGAACGTACATGAGTA 59.790 45.833 0.00 0.00 0.00 2.59
214 215 3.002042 CGGACTATCGAACGTACATGAGT 59.998 47.826 0.00 0.00 0.00 3.41
215 216 3.542690 CGGACTATCGAACGTACATGAG 58.457 50.000 0.00 0.00 0.00 2.90
216 217 2.286595 GCGGACTATCGAACGTACATGA 60.287 50.000 0.00 0.00 0.00 3.07
217 218 2.041966 GCGGACTATCGAACGTACATG 58.958 52.381 0.00 0.00 0.00 3.21
218 219 1.945394 AGCGGACTATCGAACGTACAT 59.055 47.619 0.00 0.00 0.00 2.29
219 220 1.372582 AGCGGACTATCGAACGTACA 58.627 50.000 0.00 0.00 0.00 2.90
220 221 3.592381 TTAGCGGACTATCGAACGTAC 57.408 47.619 0.00 0.00 0.00 3.67
221 222 4.143030 GCTATTAGCGGACTATCGAACGTA 60.143 45.833 0.00 0.00 0.00 3.57
222 223 3.364764 GCTATTAGCGGACTATCGAACGT 60.365 47.826 0.00 0.00 0.00 3.99
223 224 3.162068 GCTATTAGCGGACTATCGAACG 58.838 50.000 0.00 0.00 0.00 3.95
224 225 3.500014 GGCTATTAGCGGACTATCGAAC 58.500 50.000 9.50 0.00 43.62 3.95
225 226 2.161012 CGGCTATTAGCGGACTATCGAA 59.839 50.000 15.98 0.00 43.27 3.71
226 227 1.736126 CGGCTATTAGCGGACTATCGA 59.264 52.381 15.98 0.00 43.27 3.59
227 228 1.202154 CCGGCTATTAGCGGACTATCG 60.202 57.143 21.07 11.63 43.27 2.92
228 229 1.469423 GCCGGCTATTAGCGGACTATC 60.469 57.143 22.15 5.50 43.27 2.08
229 230 0.531200 GCCGGCTATTAGCGGACTAT 59.469 55.000 22.15 0.00 43.27 2.12
230 231 0.538977 AGCCGGCTATTAGCGGACTA 60.539 55.000 31.86 0.00 43.27 2.59
231 232 0.538977 TAGCCGGCTATTAGCGGACT 60.539 55.000 32.24 17.77 43.27 3.85
232 233 0.531200 ATAGCCGGCTATTAGCGGAC 59.469 55.000 37.79 12.09 43.27 4.79
233 234 2.022195 CTATAGCCGGCTATTAGCGGA 58.978 52.381 44.65 28.53 43.27 5.54
234 235 1.536284 GCTATAGCCGGCTATTAGCGG 60.536 57.143 44.65 29.91 39.65 5.52
235 236 1.841450 GCTATAGCCGGCTATTAGCG 58.159 55.000 44.65 31.19 39.65 4.26
249 250 8.097038 CCTTCAAATCAACTATAGCAGGCTATA 58.903 37.037 17.48 17.48 39.65 1.31
250 251 6.939163 CCTTCAAATCAACTATAGCAGGCTAT 59.061 38.462 17.12 17.12 41.58 2.97
251 252 6.099701 TCCTTCAAATCAACTATAGCAGGCTA 59.900 38.462 3.11 3.11 0.00 3.93
252 253 5.104360 TCCTTCAAATCAACTATAGCAGGCT 60.104 40.000 0.00 0.00 0.00 4.58
253 254 5.008118 GTCCTTCAAATCAACTATAGCAGGC 59.992 44.000 0.00 0.00 0.00 4.85
254 255 5.529060 GGTCCTTCAAATCAACTATAGCAGG 59.471 44.000 0.00 0.00 0.00 4.85
255 256 5.235186 CGGTCCTTCAAATCAACTATAGCAG 59.765 44.000 0.00 0.00 0.00 4.24
256 257 5.116180 CGGTCCTTCAAATCAACTATAGCA 58.884 41.667 0.00 0.00 0.00 3.49
257 258 5.116882 ACGGTCCTTCAAATCAACTATAGC 58.883 41.667 0.00 0.00 0.00 2.97
258 259 6.255887 GTGACGGTCCTTCAAATCAACTATAG 59.744 42.308 5.55 0.00 0.00 1.31
259 260 6.070995 AGTGACGGTCCTTCAAATCAACTATA 60.071 38.462 5.55 0.00 0.00 1.31
260 261 4.935808 GTGACGGTCCTTCAAATCAACTAT 59.064 41.667 5.55 0.00 0.00 2.12
261 262 4.039973 AGTGACGGTCCTTCAAATCAACTA 59.960 41.667 5.55 0.00 0.00 2.24
262 263 3.139077 GTGACGGTCCTTCAAATCAACT 58.861 45.455 5.55 0.00 0.00 3.16
263 264 3.139077 AGTGACGGTCCTTCAAATCAAC 58.861 45.455 5.55 0.00 0.00 3.18
264 265 3.485463 AGTGACGGTCCTTCAAATCAA 57.515 42.857 5.55 0.00 0.00 2.57
265 266 4.819105 ATAGTGACGGTCCTTCAAATCA 57.181 40.909 5.55 0.00 0.00 2.57
266 267 5.673818 GCAAATAGTGACGGTCCTTCAAATC 60.674 44.000 5.55 0.00 0.00 2.17
267 268 4.156008 GCAAATAGTGACGGTCCTTCAAAT 59.844 41.667 5.55 0.00 0.00 2.32
268 269 3.500680 GCAAATAGTGACGGTCCTTCAAA 59.499 43.478 5.55 0.00 0.00 2.69
269 270 3.071479 GCAAATAGTGACGGTCCTTCAA 58.929 45.455 5.55 0.00 0.00 2.69
270 271 2.614481 GGCAAATAGTGACGGTCCTTCA 60.614 50.000 5.55 0.00 0.00 3.02
271 272 2.007608 GGCAAATAGTGACGGTCCTTC 58.992 52.381 5.55 0.00 0.00 3.46
272 273 1.349688 TGGCAAATAGTGACGGTCCTT 59.650 47.619 5.55 0.00 38.59 3.36
273 274 0.981183 TGGCAAATAGTGACGGTCCT 59.019 50.000 5.55 5.14 38.59 3.85
274 275 2.038387 ATGGCAAATAGTGACGGTCC 57.962 50.000 5.55 0.00 38.59 4.46
275 276 3.746492 GGATATGGCAAATAGTGACGGTC 59.254 47.826 0.00 0.00 38.59 4.79
276 277 3.496160 GGGATATGGCAAATAGTGACGGT 60.496 47.826 0.00 0.00 38.59 4.83
277 278 3.074412 GGGATATGGCAAATAGTGACGG 58.926 50.000 0.00 0.00 38.59 4.79
278 279 2.736721 CGGGATATGGCAAATAGTGACG 59.263 50.000 0.00 0.00 38.59 4.35
279 280 2.484264 GCGGGATATGGCAAATAGTGAC 59.516 50.000 0.00 0.00 34.82 3.67
280 281 2.371841 AGCGGGATATGGCAAATAGTGA 59.628 45.455 0.00 0.00 0.00 3.41
281 282 2.783135 AGCGGGATATGGCAAATAGTG 58.217 47.619 0.00 0.00 0.00 2.74
282 283 4.844349 ATAGCGGGATATGGCAAATAGT 57.156 40.909 0.00 0.00 0.00 2.12
283 284 7.624360 TTAAATAGCGGGATATGGCAAATAG 57.376 36.000 0.00 0.00 0.00 1.73
284 285 8.301002 GTTTTAAATAGCGGGATATGGCAAATA 58.699 33.333 0.00 0.00 0.00 1.40
285 286 6.909550 TTTAAATAGCGGGATATGGCAAAT 57.090 33.333 0.00 0.00 0.00 2.32
286 287 6.096987 TGTTTTAAATAGCGGGATATGGCAAA 59.903 34.615 0.00 0.00 0.00 3.68
287 288 5.594725 TGTTTTAAATAGCGGGATATGGCAA 59.405 36.000 0.00 0.00 0.00 4.52
288 289 5.133941 TGTTTTAAATAGCGGGATATGGCA 58.866 37.500 0.00 0.00 0.00 4.92
289 290 5.699097 TGTTTTAAATAGCGGGATATGGC 57.301 39.130 0.00 0.00 0.00 4.40
290 291 7.881142 TCAATGTTTTAAATAGCGGGATATGG 58.119 34.615 0.00 0.00 0.00 2.74
291 292 9.180678 GTTCAATGTTTTAAATAGCGGGATATG 57.819 33.333 0.00 0.00 0.00 1.78
292 293 8.908903 TGTTCAATGTTTTAAATAGCGGGATAT 58.091 29.630 0.00 0.00 0.00 1.63
293 294 8.185505 GTGTTCAATGTTTTAAATAGCGGGATA 58.814 33.333 0.00 0.00 0.00 2.59
294 295 7.033185 GTGTTCAATGTTTTAAATAGCGGGAT 58.967 34.615 0.00 0.00 0.00 3.85
295 296 6.207810 AGTGTTCAATGTTTTAAATAGCGGGA 59.792 34.615 0.00 0.00 0.00 5.14
296 297 6.386654 AGTGTTCAATGTTTTAAATAGCGGG 58.613 36.000 0.00 0.00 0.00 6.13
297 298 7.483691 GGTAGTGTTCAATGTTTTAAATAGCGG 59.516 37.037 0.00 0.00 0.00 5.52
298 299 7.215568 CGGTAGTGTTCAATGTTTTAAATAGCG 59.784 37.037 0.00 0.00 0.00 4.26
299 300 8.231837 TCGGTAGTGTTCAATGTTTTAAATAGC 58.768 33.333 0.00 0.00 0.00 2.97
301 302 9.881529 GTTCGGTAGTGTTCAATGTTTTAAATA 57.118 29.630 0.00 0.00 0.00 1.40
302 303 8.626526 AGTTCGGTAGTGTTCAATGTTTTAAAT 58.373 29.630 0.00 0.00 0.00 1.40
303 304 7.987649 AGTTCGGTAGTGTTCAATGTTTTAAA 58.012 30.769 0.00 0.00 0.00 1.52
304 305 7.556733 AGTTCGGTAGTGTTCAATGTTTTAA 57.443 32.000 0.00 0.00 0.00 1.52
305 306 8.659925 TTAGTTCGGTAGTGTTCAATGTTTTA 57.340 30.769 0.00 0.00 0.00 1.52
306 307 7.556733 TTAGTTCGGTAGTGTTCAATGTTTT 57.443 32.000 0.00 0.00 0.00 2.43
307 308 7.556733 TTTAGTTCGGTAGTGTTCAATGTTT 57.443 32.000 0.00 0.00 0.00 2.83
308 309 7.227910 ACATTTAGTTCGGTAGTGTTCAATGTT 59.772 33.333 0.00 0.00 29.01 2.71
309 310 6.708949 ACATTTAGTTCGGTAGTGTTCAATGT 59.291 34.615 0.00 0.00 0.00 2.71
310 311 7.015289 CACATTTAGTTCGGTAGTGTTCAATG 58.985 38.462 0.00 0.00 0.00 2.82
311 312 6.932400 TCACATTTAGTTCGGTAGTGTTCAAT 59.068 34.615 0.00 0.00 0.00 2.57
312 313 6.282167 TCACATTTAGTTCGGTAGTGTTCAA 58.718 36.000 0.00 0.00 0.00 2.69
313 314 5.845103 TCACATTTAGTTCGGTAGTGTTCA 58.155 37.500 0.00 0.00 0.00 3.18
314 315 6.963049 ATCACATTTAGTTCGGTAGTGTTC 57.037 37.500 0.00 0.00 0.00 3.18
334 335 6.418057 ACCTGTGAAATTTAAAGGCAATCA 57.582 33.333 11.42 0.00 0.00 2.57
354 355 4.506802 GGACTTATGTTCACCTGGAAACCT 60.507 45.833 0.00 0.53 37.23 3.50
359 360 3.248024 ACTGGACTTATGTTCACCTGGA 58.752 45.455 0.00 0.00 0.00 3.86
361 362 4.899502 AGAACTGGACTTATGTTCACCTG 58.100 43.478 0.00 0.00 41.56 4.00
364 365 6.049790 GGGATAGAACTGGACTTATGTTCAC 58.950 44.000 0.00 0.00 41.56 3.18
369 370 4.939052 ACGGGATAGAACTGGACTTATG 57.061 45.455 0.00 0.00 0.00 1.90
371 372 5.750352 AAAACGGGATAGAACTGGACTTA 57.250 39.130 0.00 0.00 0.00 2.24
406 407 9.322769 ACAGTCTAGTAGGAAAGAAGGAAAATA 57.677 33.333 0.00 0.00 0.00 1.40
407 408 8.097662 CACAGTCTAGTAGGAAAGAAGGAAAAT 58.902 37.037 0.00 0.00 0.00 1.82
410 411 6.312529 TCACAGTCTAGTAGGAAAGAAGGAA 58.687 40.000 0.00 0.00 0.00 3.36
411 412 5.888901 TCACAGTCTAGTAGGAAAGAAGGA 58.111 41.667 0.00 0.00 0.00 3.36
412 413 5.393678 GCTCACAGTCTAGTAGGAAAGAAGG 60.394 48.000 0.00 0.00 0.00 3.46
413 414 5.184096 TGCTCACAGTCTAGTAGGAAAGAAG 59.816 44.000 0.00 0.00 0.00 2.85
415 416 4.663334 TGCTCACAGTCTAGTAGGAAAGA 58.337 43.478 0.00 0.00 0.00 2.52
417 418 5.801531 TTTGCTCACAGTCTAGTAGGAAA 57.198 39.130 0.00 0.00 0.00 3.13
418 419 5.801531 TTTTGCTCACAGTCTAGTAGGAA 57.198 39.130 0.00 0.00 0.00 3.36
419 420 5.724328 CATTTTGCTCACAGTCTAGTAGGA 58.276 41.667 0.00 0.00 0.00 2.94
420 421 4.331168 GCATTTTGCTCACAGTCTAGTAGG 59.669 45.833 0.00 0.00 40.96 3.18
421 422 4.931601 TGCATTTTGCTCACAGTCTAGTAG 59.068 41.667 0.75 0.00 45.31 2.57
422 423 4.893608 TGCATTTTGCTCACAGTCTAGTA 58.106 39.130 0.75 0.00 45.31 1.82
423 424 3.743521 TGCATTTTGCTCACAGTCTAGT 58.256 40.909 0.75 0.00 45.31 2.57
425 426 3.882288 TGTTGCATTTTGCTCACAGTCTA 59.118 39.130 0.75 0.00 45.31 2.59
426 427 2.689471 TGTTGCATTTTGCTCACAGTCT 59.311 40.909 0.75 0.00 45.31 3.24
427 428 3.082698 TGTTGCATTTTGCTCACAGTC 57.917 42.857 0.75 0.00 45.31 3.51
428 429 3.068448 TCATGTTGCATTTTGCTCACAGT 59.932 39.130 0.75 0.00 45.31 3.55
429 430 3.644823 TCATGTTGCATTTTGCTCACAG 58.355 40.909 0.75 0.41 45.31 3.66
430 431 3.729862 TCATGTTGCATTTTGCTCACA 57.270 38.095 0.75 4.60 45.31 3.58
431 432 3.302434 CGATCATGTTGCATTTTGCTCAC 59.698 43.478 0.75 0.00 45.31 3.51
433 434 3.302434 CACGATCATGTTGCATTTTGCTC 59.698 43.478 0.75 0.00 45.31 4.26
434 435 3.057386 TCACGATCATGTTGCATTTTGCT 60.057 39.130 0.75 0.00 45.31 3.91
436 437 4.725359 TCTCACGATCATGTTGCATTTTG 58.275 39.130 0.00 0.00 0.00 2.44
437 438 5.375417 TTCTCACGATCATGTTGCATTTT 57.625 34.783 0.00 0.00 0.00 1.82
438 439 5.375417 TTTCTCACGATCATGTTGCATTT 57.625 34.783 0.00 0.00 0.00 2.32
440 441 3.376234 CCTTTCTCACGATCATGTTGCAT 59.624 43.478 0.00 0.00 0.00 3.96
442 443 2.096496 CCCTTTCTCACGATCATGTTGC 59.904 50.000 0.00 0.00 0.00 4.17
443 444 3.599343 TCCCTTTCTCACGATCATGTTG 58.401 45.455 0.00 0.00 0.00 3.33
446 476 5.355071 TGAAATTCCCTTTCTCACGATCATG 59.645 40.000 0.00 0.00 43.14 3.07
448 478 4.905429 TGAAATTCCCTTTCTCACGATCA 58.095 39.130 0.00 0.00 43.14 2.92
449 479 4.333926 CCTGAAATTCCCTTTCTCACGATC 59.666 45.833 0.00 0.00 43.14 3.69
452 482 2.749621 CCCTGAAATTCCCTTTCTCACG 59.250 50.000 0.00 0.00 43.14 4.35
456 486 1.616994 CGGCCCTGAAATTCCCTTTCT 60.617 52.381 0.00 0.00 43.14 2.52
458 488 0.407918 TCGGCCCTGAAATTCCCTTT 59.592 50.000 0.00 0.00 0.00 3.11
459 489 0.034089 CTCGGCCCTGAAATTCCCTT 60.034 55.000 0.00 0.00 0.00 3.95
462 492 1.472878 GTTTCTCGGCCCTGAAATTCC 59.527 52.381 17.33 5.25 35.13 3.01
463 493 2.162408 CAGTTTCTCGGCCCTGAAATTC 59.838 50.000 17.33 8.57 35.13 2.17
469 499 1.743252 GCTCAGTTTCTCGGCCCTG 60.743 63.158 0.00 0.00 0.00 4.45
471 501 1.003233 AAGCTCAGTTTCTCGGCCC 60.003 57.895 0.00 0.00 0.00 5.80
473 503 1.355066 CCGAAGCTCAGTTTCTCGGC 61.355 60.000 7.75 0.00 32.53 5.54
474 504 0.243907 TCCGAAGCTCAGTTTCTCGG 59.756 55.000 13.38 13.38 40.22 4.63
475 505 2.065993 TTCCGAAGCTCAGTTTCTCG 57.934 50.000 0.00 0.00 0.00 4.04
479 509 3.214328 ACATGTTTCCGAAGCTCAGTTT 58.786 40.909 0.00 0.00 0.00 2.66
480 510 2.851195 ACATGTTTCCGAAGCTCAGTT 58.149 42.857 0.00 0.00 0.00 3.16
481 511 2.550830 ACATGTTTCCGAAGCTCAGT 57.449 45.000 0.00 0.00 0.00 3.41
483 513 3.325870 CTGTACATGTTTCCGAAGCTCA 58.674 45.455 2.30 0.00 0.00 4.26
484 514 2.094417 GCTGTACATGTTTCCGAAGCTC 59.906 50.000 2.30 0.00 0.00 4.09
485 515 2.076863 GCTGTACATGTTTCCGAAGCT 58.923 47.619 2.30 0.00 0.00 3.74
486 516 2.076863 AGCTGTACATGTTTCCGAAGC 58.923 47.619 2.30 4.93 0.00 3.86
488 518 3.678056 AGAGCTGTACATGTTTCCGAA 57.322 42.857 2.30 0.00 0.00 4.30
489 519 3.244078 ACAAGAGCTGTACATGTTTCCGA 60.244 43.478 2.30 0.00 36.10 4.55
490 520 3.067106 ACAAGAGCTGTACATGTTTCCG 58.933 45.455 2.30 0.00 36.10 4.30
491 521 4.515191 TCAACAAGAGCTGTACATGTTTCC 59.485 41.667 2.30 0.00 37.23 3.13
492 522 5.673337 TCAACAAGAGCTGTACATGTTTC 57.327 39.130 2.30 0.00 37.23 2.78
493 523 5.679734 CTCAACAAGAGCTGTACATGTTT 57.320 39.130 2.30 0.00 37.23 2.83
552 765 2.107031 TGGACATGAATATCCTGCCTGG 59.893 50.000 0.00 0.00 35.86 4.45
574 787 3.829948 CAATTAACTGCTTGCTGGAGTG 58.170 45.455 5.40 0.00 46.85 3.51
592 805 5.931724 GCCCAGTTTGTACAAAATAAGCAAT 59.068 36.000 25.20 3.57 30.79 3.56
596 809 5.116069 ACGCCCAGTTTGTACAAAATAAG 57.884 39.130 22.14 15.69 31.33 1.73
599 812 2.952978 TGACGCCCAGTTTGTACAAAAT 59.047 40.909 22.14 18.63 31.33 1.82
616 829 3.606065 GAGGACCGTGGACGTGACG 62.606 68.421 2.24 2.24 37.74 4.35
617 830 1.803366 AAGAGGACCGTGGACGTGAC 61.803 60.000 0.00 0.00 37.74 3.67
618 831 1.521450 GAAGAGGACCGTGGACGTGA 61.521 60.000 0.00 0.00 37.74 4.35
619 832 1.080705 GAAGAGGACCGTGGACGTG 60.081 63.158 0.00 0.00 37.74 4.49
620 833 0.826672 AAGAAGAGGACCGTGGACGT 60.827 55.000 0.00 0.00 37.74 4.34
621 834 0.317479 AAAGAAGAGGACCGTGGACG 59.683 55.000 0.00 0.00 39.44 4.79
622 835 1.619332 AGAAAGAAGAGGACCGTGGAC 59.381 52.381 0.00 0.00 0.00 4.02
623 836 2.011122 AGAAAGAAGAGGACCGTGGA 57.989 50.000 0.00 0.00 0.00 4.02
625 838 3.728845 TGAAAGAAAGAAGAGGACCGTG 58.271 45.455 0.00 0.00 0.00 4.94
626 839 4.127907 GTTGAAAGAAAGAAGAGGACCGT 58.872 43.478 0.00 0.00 0.00 4.83
627 840 4.127171 TGTTGAAAGAAAGAAGAGGACCG 58.873 43.478 0.00 0.00 0.00 4.79
629 842 7.935520 AGATTTGTTGAAAGAAAGAAGAGGAC 58.064 34.615 0.00 0.00 0.00 3.85
630 843 7.995488 AGAGATTTGTTGAAAGAAAGAAGAGGA 59.005 33.333 0.00 0.00 0.00 3.71
632 845 8.834465 TGAGAGATTTGTTGAAAGAAAGAAGAG 58.166 33.333 0.00 0.00 0.00 2.85
648 891 3.626670 GTGATCCCTGCTTGAGAGATTTG 59.373 47.826 0.00 0.00 0.00 2.32
689 948 5.427157 TGATAGTGACCCCTGCTTGTTTATA 59.573 40.000 0.00 0.00 0.00 0.98
703 962 5.923684 GCTTGCTAGACTTATGATAGTGACC 59.076 44.000 0.00 0.00 0.00 4.02
714 973 5.640189 AAGAAGTACGCTTGCTAGACTTA 57.360 39.130 0.00 0.00 34.61 2.24
716 975 4.238514 CAAAGAAGTACGCTTGCTAGACT 58.761 43.478 0.00 0.00 34.61 3.24
719 978 4.686554 AGAACAAAGAAGTACGCTTGCTAG 59.313 41.667 5.05 0.00 34.61 3.42
720 979 4.447724 CAGAACAAAGAAGTACGCTTGCTA 59.552 41.667 5.05 0.00 34.61 3.49
722 981 3.545633 CAGAACAAAGAAGTACGCTTGC 58.454 45.455 5.05 0.00 34.61 4.01
752 1011 1.266989 GCCGGCCAGATTGTATAAAGC 59.733 52.381 18.11 0.00 0.00 3.51
753 1012 1.880027 GGCCGGCCAGATTGTATAAAG 59.120 52.381 40.73 0.00 35.81 1.85
779 1038 5.204101 TGATATAAAAATGACGCGCACATG 58.796 37.500 17.54 0.00 0.00 3.21
800 1059 2.606213 TGGTGTCCGGCCAGATGA 60.606 61.111 2.24 0.00 0.00 2.92
803 1062 3.936203 GTGTGGTGTCCGGCCAGA 61.936 66.667 2.24 0.00 36.57 3.86
804 1063 3.883744 GAGTGTGGTGTCCGGCCAG 62.884 68.421 2.24 0.00 36.57 4.85
805 1064 3.936203 GAGTGTGGTGTCCGGCCA 61.936 66.667 2.24 0.00 0.00 5.36
807 1066 3.936203 TGGAGTGTGGTGTCCGGC 61.936 66.667 0.00 0.00 35.37 6.13
809 1068 2.355837 CGTGGAGTGTGGTGTCCG 60.356 66.667 0.00 0.00 35.37 4.79
811 1070 2.665185 GCCGTGGAGTGTGGTGTC 60.665 66.667 0.00 0.00 0.00 3.67
812 1071 3.037686 TTGCCGTGGAGTGTGGTGT 62.038 57.895 0.00 0.00 0.00 4.16
818 1077 4.012895 GTGCGTTGCCGTGGAGTG 62.013 66.667 0.00 0.00 36.15 3.51
820 1079 3.240606 CTTGTGCGTTGCCGTGGAG 62.241 63.158 0.00 0.00 36.15 3.86
856 1116 3.192001 AGAGATACGGTGCTTGTACGAAA 59.808 43.478 0.00 0.00 0.00 3.46
879 1143 7.931015 ACTTGGTGGTATAAATAGGAGATGA 57.069 36.000 0.00 0.00 0.00 2.92
880 1144 8.095169 GGTACTTGGTGGTATAAATAGGAGATG 58.905 40.741 0.00 0.00 0.00 2.90
881 1145 7.792736 TGGTACTTGGTGGTATAAATAGGAGAT 59.207 37.037 0.00 0.00 0.00 2.75
904 1191 0.396556 GGTCTGGTTTGTTGGGTGGT 60.397 55.000 0.00 0.00 0.00 4.16
908 1195 2.107366 ACTTTGGTCTGGTTTGTTGGG 58.893 47.619 0.00 0.00 0.00 4.12
932 1219 2.636830 CAACCTAGGATGGCAAGTCTG 58.363 52.381 17.98 0.00 0.00 3.51
934 1221 1.340017 TGCAACCTAGGATGGCAAGTC 60.340 52.381 17.98 0.22 0.00 3.01
982 1272 2.484417 CCATCTTCAGTTAGGCAGCGAT 60.484 50.000 0.00 0.00 0.00 4.58
986 1276 1.065199 TGGCCATCTTCAGTTAGGCAG 60.065 52.381 0.00 0.00 46.96 4.85
1030 1320 1.200948 GAGGCAAATGCAACAGAGGAC 59.799 52.381 7.80 0.00 44.36 3.85
1036 1326 0.675083 CCACAGAGGCAAATGCAACA 59.325 50.000 7.80 0.00 44.36 3.33
1044 1334 1.419381 TGACAGTACCACAGAGGCAA 58.581 50.000 0.00 0.00 43.14 4.52
1068 1358 1.300697 ACCGTTCAACTCACGAGCC 60.301 57.895 0.00 0.00 40.20 4.70
1078 1368 2.131972 CATCGACAAGTCACCGTTCAA 58.868 47.619 0.72 0.00 0.00 2.69
1085 1375 1.626654 CGCCACCATCGACAAGTCAC 61.627 60.000 0.72 0.00 0.00 3.67
1131 1421 1.000233 CGTCCTTGTACACACGGTCG 61.000 60.000 9.35 9.35 39.39 4.79
1133 1423 1.300388 GCGTCCTTGTACACACGGT 60.300 57.895 18.10 0.00 36.71 4.83
1165 1455 0.464013 TTGAAAACCTCGAACCGGCA 60.464 50.000 0.00 0.00 0.00 5.69
1167 1457 1.334689 GCTTTGAAAACCTCGAACCGG 60.335 52.381 0.00 0.00 0.00 5.28
1242 1532 4.332543 GTGATATCAGCGAATTGGTTGACA 59.667 41.667 5.42 0.00 29.74 3.58
1300 1590 2.293122 TGATGGAGTTTGCTTTGAACCG 59.707 45.455 0.00 0.00 0.00 4.44
1320 1610 2.841442 ACCCGGAAGAAAGAACTCTG 57.159 50.000 0.73 0.00 0.00 3.35
1323 1613 2.438392 ACTGAACCCGGAAGAAAGAACT 59.562 45.455 0.73 0.00 0.00 3.01
1324 1614 2.847441 ACTGAACCCGGAAGAAAGAAC 58.153 47.619 0.73 0.00 0.00 3.01
1325 1615 3.135895 AGAACTGAACCCGGAAGAAAGAA 59.864 43.478 0.73 0.00 0.00 2.52
1326 1616 2.704065 AGAACTGAACCCGGAAGAAAGA 59.296 45.455 0.73 0.00 0.00 2.52
1327 1617 3.127425 AGAACTGAACCCGGAAGAAAG 57.873 47.619 0.73 0.00 0.00 2.62
1328 1618 3.570912 AAGAACTGAACCCGGAAGAAA 57.429 42.857 0.73 0.00 0.00 2.52
1329 1619 3.135895 AGAAAGAACTGAACCCGGAAGAA 59.864 43.478 0.73 0.00 0.00 2.52
1330 1620 2.704065 AGAAAGAACTGAACCCGGAAGA 59.296 45.455 0.73 0.00 0.00 2.87
1331 1621 3.127425 AGAAAGAACTGAACCCGGAAG 57.873 47.619 0.73 0.00 0.00 3.46
1332 1622 3.473625 GAAGAAAGAACTGAACCCGGAA 58.526 45.455 0.73 0.00 0.00 4.30
1333 1623 2.224450 GGAAGAAAGAACTGAACCCGGA 60.224 50.000 0.73 0.00 0.00 5.14
1334 1624 2.152016 GGAAGAAAGAACTGAACCCGG 58.848 52.381 0.00 0.00 0.00 5.73
1335 1625 1.798813 CGGAAGAAAGAACTGAACCCG 59.201 52.381 0.00 0.00 0.00 5.28
1336 1626 2.152016 CCGGAAGAAAGAACTGAACCC 58.848 52.381 0.00 0.00 0.00 4.11
1337 1627 2.152016 CCCGGAAGAAAGAACTGAACC 58.848 52.381 0.73 0.00 0.00 3.62
1338 1628 2.847441 ACCCGGAAGAAAGAACTGAAC 58.153 47.619 0.73 0.00 0.00 3.18
1339 1629 3.118186 TGAACCCGGAAGAAAGAACTGAA 60.118 43.478 0.73 0.00 0.00 3.02
1340 1630 2.436542 TGAACCCGGAAGAAAGAACTGA 59.563 45.455 0.73 0.00 0.00 3.41
1341 1631 2.808543 CTGAACCCGGAAGAAAGAACTG 59.191 50.000 0.73 0.00 0.00 3.16
1354 1644 4.513442 TCAAATTCTCATACCTGAACCCG 58.487 43.478 0.00 0.00 0.00 5.28
1357 1647 7.604164 TCAAGACTCAAATTCTCATACCTGAAC 59.396 37.037 0.00 0.00 0.00 3.18
1379 1669 0.529378 GTTGCTGGAAGGGCATCAAG 59.471 55.000 0.00 0.00 39.54 3.02
1522 1812 5.954335 ACAACAGCCTAGAAATAATTGTGC 58.046 37.500 0.00 0.00 0.00 4.57
1553 1843 3.043713 TCGCGGCAACAGCAGAAG 61.044 61.111 6.13 0.00 36.17 2.85
1596 1886 2.029020 CGACAGTGAGATCAACTTCCCA 60.029 50.000 0.00 0.00 0.00 4.37
1733 2023 4.561530 CGTCAGCTGCAATATATGGGTAGT 60.562 45.833 9.47 0.00 0.00 2.73
1745 2035 2.203195 ACTTGCCGTCAGCTGCAA 60.203 55.556 9.47 9.01 44.23 4.08
1860 2151 2.169144 TCCATCCACAGCTACAGACATG 59.831 50.000 0.00 0.00 0.00 3.21
1861 2152 2.433604 CTCCATCCACAGCTACAGACAT 59.566 50.000 0.00 0.00 0.00 3.06
1878 2169 0.895530 GGAACGTCATGTCTCCTCCA 59.104 55.000 0.00 0.00 0.00 3.86
1917 2208 1.000827 CGCAGGACCTAGCTAGTCATG 60.001 57.143 22.53 22.53 46.11 3.07
2059 2350 4.965814 TCTTGTCTGCAATGTCTTTCTCT 58.034 39.130 0.00 0.00 33.65 3.10
2131 2422 3.342377 TTAGGTGGCATTTGACGATCA 57.658 42.857 0.00 0.00 0.00 2.92
2137 2428 3.363627 TGCATGATTAGGTGGCATTTGA 58.636 40.909 0.00 0.00 0.00 2.69
2161 2452 2.610479 CGGTTCTGCAGTAGTGTGTGAT 60.610 50.000 14.67 0.00 0.00 3.06
2162 2453 1.269569 CGGTTCTGCAGTAGTGTGTGA 60.270 52.381 14.67 0.00 0.00 3.58
2167 2458 0.603569 AGTCCGGTTCTGCAGTAGTG 59.396 55.000 14.67 2.77 0.00 2.74
2168 2459 1.339097 AAGTCCGGTTCTGCAGTAGT 58.661 50.000 14.67 0.00 0.00 2.73
2169 2460 2.457366 AAAGTCCGGTTCTGCAGTAG 57.543 50.000 14.67 3.69 0.00 2.57
2170 2461 2.353406 GCTAAAGTCCGGTTCTGCAGTA 60.353 50.000 14.67 0.00 0.00 2.74
2171 2462 1.608283 GCTAAAGTCCGGTTCTGCAGT 60.608 52.381 14.67 0.00 0.00 4.40
2172 2463 1.079503 GCTAAAGTCCGGTTCTGCAG 58.920 55.000 7.63 7.63 0.00 4.41
2173 2464 0.669318 CGCTAAAGTCCGGTTCTGCA 60.669 55.000 0.00 0.00 0.00 4.41
2174 2465 1.967597 GCGCTAAAGTCCGGTTCTGC 61.968 60.000 0.00 1.11 0.00 4.26
2175 2466 1.359459 GGCGCTAAAGTCCGGTTCTG 61.359 60.000 7.64 0.00 0.00 3.02
2176 2467 1.079336 GGCGCTAAAGTCCGGTTCT 60.079 57.895 7.64 0.00 0.00 3.01
2177 2468 2.450345 CGGCGCTAAAGTCCGGTTC 61.450 63.158 7.64 0.00 39.52 3.62
2178 2469 2.433664 CGGCGCTAAAGTCCGGTT 60.434 61.111 7.64 0.00 39.52 4.44
2181 2472 2.433664 AACCGGCGCTAAAGTCCG 60.434 61.111 7.64 0.00 42.58 4.79
2182 2473 2.450345 CGAACCGGCGCTAAAGTCC 61.450 63.158 7.64 0.00 0.00 3.85
2183 2474 0.456653 TACGAACCGGCGCTAAAGTC 60.457 55.000 7.64 0.00 33.86 3.01
2184 2475 0.038343 TTACGAACCGGCGCTAAAGT 60.038 50.000 7.64 3.16 33.86 2.66
2185 2476 0.643820 CTTACGAACCGGCGCTAAAG 59.356 55.000 7.64 0.00 33.86 1.85
2186 2477 0.737019 CCTTACGAACCGGCGCTAAA 60.737 55.000 7.64 0.00 33.86 1.85
2187 2478 1.153784 CCTTACGAACCGGCGCTAA 60.154 57.895 7.64 0.00 33.86 3.09
2188 2479 2.491152 CCTTACGAACCGGCGCTA 59.509 61.111 7.64 0.00 33.86 4.26
2189 2480 4.446413 CCCTTACGAACCGGCGCT 62.446 66.667 7.64 0.00 33.86 5.92
2192 2483 3.617143 AAGGCCCTTACGAACCGGC 62.617 63.158 0.00 0.00 40.85 6.13
2193 2484 1.449070 GAAGGCCCTTACGAACCGG 60.449 63.158 0.00 0.00 0.00 5.28
2194 2485 0.739813 CTGAAGGCCCTTACGAACCG 60.740 60.000 0.00 0.00 0.00 4.44
2195 2486 0.323957 ACTGAAGGCCCTTACGAACC 59.676 55.000 0.00 0.00 0.00 3.62
2196 2487 1.439679 CACTGAAGGCCCTTACGAAC 58.560 55.000 0.00 0.00 0.00 3.95
2197 2488 0.321298 GCACTGAAGGCCCTTACGAA 60.321 55.000 0.00 0.00 0.00 3.85
2198 2489 1.295423 GCACTGAAGGCCCTTACGA 59.705 57.895 0.00 0.00 0.00 3.43
2199 2490 1.745489 GGCACTGAAGGCCCTTACG 60.745 63.158 0.00 0.00 45.87 3.18
2200 2491 4.320910 GGCACTGAAGGCCCTTAC 57.679 61.111 0.00 0.00 45.87 2.34
2206 2497 2.032681 AGAACCGGCACTGAAGGC 59.967 61.111 0.00 0.00 0.00 4.35
2207 2498 2.328099 GCAGAACCGGCACTGAAGG 61.328 63.158 25.80 6.06 36.38 3.46
2208 2499 1.165907 TTGCAGAACCGGCACTGAAG 61.166 55.000 25.80 6.36 41.75 3.02
2209 2500 1.153066 TTGCAGAACCGGCACTGAA 60.153 52.632 25.80 16.59 41.75 3.02
2210 2501 1.891919 GTTGCAGAACCGGCACTGA 60.892 57.895 25.80 12.30 41.75 3.41
2211 2502 2.639286 GTTGCAGAACCGGCACTG 59.361 61.111 19.83 19.83 41.75 3.66
2212 2503 2.594592 GGTTGCAGAACCGGCACT 60.595 61.111 0.00 0.00 42.47 4.40
2224 2515 0.517316 CACTCTTTAGTGCCGGTTGC 59.483 55.000 1.90 0.00 46.28 4.17
2233 2524 4.223255 GGGCTTTAGTCTCCACTCTTTAGT 59.777 45.833 0.00 0.00 35.91 2.24
2234 2525 4.383226 GGGGCTTTAGTCTCCACTCTTTAG 60.383 50.000 0.00 0.00 33.62 1.85
2235 2526 3.518303 GGGGCTTTAGTCTCCACTCTTTA 59.482 47.826 0.00 0.00 33.62 1.85
2236 2527 2.306219 GGGGCTTTAGTCTCCACTCTTT 59.694 50.000 0.00 0.00 33.62 2.52
2237 2528 1.909986 GGGGCTTTAGTCTCCACTCTT 59.090 52.381 0.00 0.00 33.62 2.85
2238 2529 1.574263 GGGGCTTTAGTCTCCACTCT 58.426 55.000 0.00 0.00 33.62 3.24
2239 2530 0.542333 GGGGGCTTTAGTCTCCACTC 59.458 60.000 0.00 0.00 40.90 3.51
2240 2531 2.698168 GGGGGCTTTAGTCTCCACT 58.302 57.895 0.00 0.00 40.90 4.00
2260 2551 1.415289 GATGAACCGGTACTAAGGGGG 59.585 57.143 8.00 0.00 0.00 5.40
2261 2552 2.112998 TGATGAACCGGTACTAAGGGG 58.887 52.381 8.00 0.00 0.00 4.79
2262 2553 2.480759 CGTGATGAACCGGTACTAAGGG 60.481 54.545 8.00 0.00 0.00 3.95
2263 2554 2.424601 TCGTGATGAACCGGTACTAAGG 59.575 50.000 8.00 0.00 0.00 2.69
2264 2555 3.770263 TCGTGATGAACCGGTACTAAG 57.230 47.619 8.00 0.00 0.00 2.18
2275 2566 2.215465 TAGCGCCGGTTCGTGATGAA 62.215 55.000 2.29 0.00 0.00 2.57
2276 2567 2.215465 TTAGCGCCGGTTCGTGATGA 62.215 55.000 2.29 0.00 0.00 2.92
2277 2568 1.355796 TTTAGCGCCGGTTCGTGATG 61.356 55.000 2.29 0.00 0.00 3.07
2278 2569 1.079681 TTTAGCGCCGGTTCGTGAT 60.080 52.632 2.29 0.00 0.00 3.06
2279 2570 1.735198 CTTTAGCGCCGGTTCGTGA 60.735 57.895 2.29 0.00 0.00 4.35
2280 2571 2.025418 ACTTTAGCGCCGGTTCGTG 61.025 57.895 2.29 0.00 0.00 4.35
2281 2572 2.025418 CACTTTAGCGCCGGTTCGT 61.025 57.895 2.29 0.00 0.00 3.85
2282 2573 2.776072 CACTTTAGCGCCGGTTCG 59.224 61.111 2.29 0.00 0.00 3.95
2283 2574 2.479198 GCACTTTAGCGCCGGTTC 59.521 61.111 2.29 0.00 0.00 3.62
2284 2575 3.053896 GGCACTTTAGCGCCGGTT 61.054 61.111 2.29 0.00 38.82 4.44
2289 2580 2.561373 GTGGTGGCACTTTAGCGC 59.439 61.111 18.45 0.00 34.64 5.92
2290 2581 1.959226 ACGTGGTGGCACTTTAGCG 60.959 57.895 18.45 15.80 34.64 4.26
2291 2582 1.574428 CACGTGGTGGCACTTTAGC 59.426 57.895 18.45 0.25 0.00 3.09
2325 2616 1.369091 CTAATGTCCTGCACGCACCC 61.369 60.000 0.00 0.00 0.00 4.61
2326 2617 0.673644 ACTAATGTCCTGCACGCACC 60.674 55.000 0.00 0.00 0.00 5.01
2327 2618 1.659098 GTACTAATGTCCTGCACGCAC 59.341 52.381 0.00 0.00 0.00 5.34
2328 2619 1.404986 GGTACTAATGTCCTGCACGCA 60.405 52.381 0.00 0.00 0.00 5.24
2329 2620 1.287425 GGTACTAATGTCCTGCACGC 58.713 55.000 0.00 0.00 0.00 5.34
2330 2621 1.556564 CGGTACTAATGTCCTGCACG 58.443 55.000 0.00 0.00 0.00 5.34
2331 2622 1.206371 ACCGGTACTAATGTCCTGCAC 59.794 52.381 4.49 0.00 0.00 4.57
2332 2623 1.563924 ACCGGTACTAATGTCCTGCA 58.436 50.000 4.49 0.00 0.00 4.41
2333 2624 2.277084 CAACCGGTACTAATGTCCTGC 58.723 52.381 8.00 0.00 0.00 4.85
2334 2625 2.235402 ACCAACCGGTACTAATGTCCTG 59.765 50.000 8.00 0.00 46.71 3.86
2335 2626 2.543635 ACCAACCGGTACTAATGTCCT 58.456 47.619 8.00 0.00 46.71 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.