Multiple sequence alignment - TraesCS2D01G052500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G052500 chr2D 100.000 2965 0 0 1 2965 20325717 20322753 0.000000e+00 5476.0
1 TraesCS2D01G052500 chr2D 88.925 1824 171 14 871 2685 20380973 20382774 0.000000e+00 2220.0
2 TraesCS2D01G052500 chr2D 85.771 1764 228 14 987 2734 20189074 20187318 0.000000e+00 1845.0
3 TraesCS2D01G052500 chr2D 86.008 1651 217 12 986 2634 20316507 20314869 0.000000e+00 1757.0
4 TraesCS2D01G052500 chr2D 100.000 341 0 0 3247 3587 20322471 20322131 6.540000e-177 630.0
5 TraesCS2D01G052500 chr2D 91.316 380 30 3 384 761 476964219 476964597 1.910000e-142 516.0
6 TraesCS2D01G052500 chr2D 91.316 380 30 3 384 761 476967062 476967440 1.910000e-142 516.0
7 TraesCS2D01G052500 chr2D 94.558 294 16 0 70 363 68920676 68920383 4.220000e-124 455.0
8 TraesCS2D01G052500 chr2D 78.788 165 27 6 3420 3581 484318694 484318535 1.760000e-18 104.0
9 TraesCS2D01G052500 chr2D 94.444 54 3 0 2646 2699 20308965 20308912 2.290000e-12 84.2
10 TraesCS2D01G052500 chr2A 95.638 2224 69 10 768 2963 21177123 21179346 0.000000e+00 3544.0
11 TraesCS2D01G052500 chr2A 89.090 1769 160 18 861 2609 21006788 21005033 0.000000e+00 2167.0
12 TraesCS2D01G052500 chr2A 86.780 1702 216 8 986 2684 21191617 21193312 0.000000e+00 1888.0
13 TraesCS2D01G052500 chr2A 86.618 1629 208 8 1006 2634 21148240 21149858 0.000000e+00 1792.0
14 TraesCS2D01G052500 chr2A 93.842 341 17 3 3247 3587 21179407 21179743 8.880000e-141 510.0
15 TraesCS2D01G052500 chr2A 90.426 94 6 3 2799 2892 21150120 21150210 1.750000e-23 121.0
16 TraesCS2D01G052500 chr2A 94.444 54 3 0 2646 2699 21181018 21181071 2.290000e-12 84.2
17 TraesCS2D01G052500 chr2A 94.118 51 3 0 1 51 7812791 7812741 1.070000e-10 78.7
18 TraesCS2D01G052500 chr2B 94.695 2036 104 4 924 2958 33662977 33665009 0.000000e+00 3158.0
19 TraesCS2D01G052500 chr2B 90.454 1718 151 8 972 2685 33728333 33730041 0.000000e+00 2252.0
20 TraesCS2D01G052500 chr2B 87.562 402 45 2 2244 2644 33545194 33544797 9.070000e-126 460.0
21 TraesCS2D01G052500 chr2B 89.884 346 27 4 3247 3587 33665070 33665412 4.250000e-119 438.0
22 TraesCS2D01G052500 chr2B 92.000 150 12 0 762 911 33662786 33662935 1.010000e-50 211.0
23 TraesCS2D01G052500 chr5A 82.878 1682 203 30 924 2585 511964698 511963082 0.000000e+00 1432.0
24 TraesCS2D01G052500 chr5A 80.105 191 19 12 3410 3585 602795093 602795279 1.350000e-24 124.0
25 TraesCS2D01G052500 chr1D 92.593 378 25 3 386 760 28577057 28576680 1.130000e-149 540.0
26 TraesCS2D01G052500 chr1D 90.201 398 36 3 378 772 101869734 101869337 1.910000e-142 516.0
27 TraesCS2D01G052500 chr1D 80.814 172 22 10 3420 3584 250221801 250221634 1.350000e-24 124.0
28 TraesCS2D01G052500 chr1D 80.240 167 20 7 3422 3585 276719940 276720096 2.930000e-21 113.0
29 TraesCS2D01G052500 chr1D 83.099 71 12 0 3423 3493 13500105 13500035 8.310000e-07 65.8
30 TraesCS2D01G052500 chr1A 92.000 375 26 4 384 754 143817299 143816925 1.140000e-144 523.0
31 TraesCS2D01G052500 chr1A 78.736 174 27 9 3420 3585 456286862 456287033 1.360000e-19 108.0
32 TraesCS2D01G052500 chr1A 76.966 178 28 11 3416 3587 6220054 6219884 4.930000e-14 89.8
33 TraesCS2D01G052500 chr6D 91.557 379 30 2 379 755 449179552 449179930 4.100000e-144 521.0
34 TraesCS2D01G052500 chr6D 77.487 191 26 9 3410 3585 456949673 456949485 8.200000e-17 99.0
35 TraesCS2D01G052500 chr6D 85.915 71 9 1 3420 3489 148802329 148802399 1.380000e-09 75.0
36 TraesCS2D01G052500 chr4D 91.755 376 27 4 384 755 478256240 478256615 1.480000e-143 520.0
37 TraesCS2D01G052500 chr3A 91.534 378 29 3 380 754 46043952 46044329 5.310000e-143 518.0
38 TraesCS2D01G052500 chr3A 93.688 301 18 1 63 363 24994877 24995176 1.960000e-122 449.0
39 TraesCS2D01G052500 chr7A 91.293 379 31 2 384 760 105779501 105779879 1.910000e-142 516.0
40 TraesCS2D01G052500 chr7A 79.290 169 26 7 3420 3582 287230136 287229971 3.790000e-20 110.0
41 TraesCS2D01G052500 chr5D 95.254 295 13 1 69 363 535902201 535901908 1.950000e-127 466.0
42 TraesCS2D01G052500 chr5D 80.925 173 22 6 3420 3585 249535852 249536020 3.760000e-25 126.0
43 TraesCS2D01G052500 chr5D 78.090 178 23 14 3420 3584 444362861 444362687 8.200000e-17 99.0
44 TraesCS2D01G052500 chr5B 94.915 295 15 0 69 363 646377958 646377664 2.520000e-126 462.0
45 TraesCS2D01G052500 chr4A 94.881 293 15 0 71 363 6819432 6819140 3.260000e-125 459.0
46 TraesCS2D01G052500 chr7B 93.980 299 18 0 65 363 707530484 707530782 1.520000e-123 453.0
47 TraesCS2D01G052500 chr7B 92.308 52 2 1 1 50 734431131 734431182 4.970000e-09 73.1
48 TraesCS2D01G052500 chr3D 93.688 301 18 1 64 363 556024182 556023882 1.960000e-122 449.0
49 TraesCS2D01G052500 chr3D 81.548 168 24 7 3420 3585 441568592 441568754 8.080000e-27 132.0
50 TraesCS2D01G052500 chr3D 80.347 173 17 10 3423 3585 431627165 431627330 8.140000e-22 115.0
51 TraesCS2D01G052500 chrUn 94.198 293 17 0 71 363 51420752 51420460 7.060000e-122 448.0
52 TraesCS2D01G052500 chr6B 93.137 306 19 2 55 360 92186919 92187222 7.060000e-122 448.0
53 TraesCS2D01G052500 chr6B 95.556 45 2 0 1 45 119969566 119969522 4.970000e-09 73.1
54 TraesCS2D01G052500 chr7D 81.765 170 23 5 3422 3584 180716289 180716121 6.250000e-28 135.0
55 TraesCS2D01G052500 chr1B 77.457 173 26 11 3420 3584 92586603 92586436 1.370000e-14 91.6
56 TraesCS2D01G052500 chr6A 76.437 174 29 10 3420 3581 378147445 378147272 2.290000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G052500 chr2D 20322131 20325717 3586 True 3053.0 5476 100.000000 1 3587 2 chr2D.!!$R6 3586
1 TraesCS2D01G052500 chr2D 20380973 20382774 1801 False 2220.0 2220 88.925000 871 2685 1 chr2D.!!$F1 1814
2 TraesCS2D01G052500 chr2D 20187318 20189074 1756 True 1845.0 1845 85.771000 987 2734 1 chr2D.!!$R1 1747
3 TraesCS2D01G052500 chr2D 20314869 20316507 1638 True 1757.0 1757 86.008000 986 2634 1 chr2D.!!$R3 1648
4 TraesCS2D01G052500 chr2D 476964219 476967440 3221 False 516.0 516 91.316000 384 761 2 chr2D.!!$F2 377
5 TraesCS2D01G052500 chr2A 21005033 21006788 1755 True 2167.0 2167 89.090000 861 2609 1 chr2A.!!$R2 1748
6 TraesCS2D01G052500 chr2A 21191617 21193312 1695 False 1888.0 1888 86.780000 986 2684 1 chr2A.!!$F1 1698
7 TraesCS2D01G052500 chr2A 21177123 21181071 3948 False 1379.4 3544 94.641333 768 3587 3 chr2A.!!$F3 2819
8 TraesCS2D01G052500 chr2A 21148240 21150210 1970 False 956.5 1792 88.522000 1006 2892 2 chr2A.!!$F2 1886
9 TraesCS2D01G052500 chr2B 33728333 33730041 1708 False 2252.0 2252 90.454000 972 2685 1 chr2B.!!$F1 1713
10 TraesCS2D01G052500 chr2B 33662786 33665412 2626 False 1269.0 3158 92.193000 762 3587 3 chr2B.!!$F2 2825
11 TraesCS2D01G052500 chr5A 511963082 511964698 1616 True 1432.0 1432 82.878000 924 2585 1 chr5A.!!$R1 1661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 190 0.031585 TTGCGACGACTACAAGCACT 59.968 50.0 0.0 0.0 37.57 4.40 F
309 310 0.034337 GGTAGAACCAACGCACCAGA 59.966 55.0 0.0 0.0 38.42 3.86 F
312 313 0.107410 AGAACCAACGCACCAGAACA 60.107 50.0 0.0 0.0 0.00 3.18 F
337 338 0.179137 CGCCGCAGATGAAGAGTGTA 60.179 55.0 0.0 0.0 0.00 2.90 F
764 1715 0.584876 CAAAACACCGAGTCCCGAAC 59.415 55.0 0.0 0.0 41.76 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1212 2200 1.003580 ACGATGCACAGTGGAGGATTT 59.996 47.619 1.84 0.0 0.00 2.17 R
1407 2395 2.970324 GCTTCGTGCGGGTTGACA 60.970 61.111 0.00 0.0 0.00 3.58 R
1490 2478 3.979497 CCGGGAAGCCCAACCCTT 61.979 66.667 3.03 0.0 45.83 3.95 R
1495 2483 4.109675 GCTAGCCGGGAAGCCCAA 62.110 66.667 2.29 0.0 45.83 4.12 R
2739 6421 7.713764 AACTTGTTGGTTTTGAATTCTATGC 57.286 32.000 7.05 0.0 0.00 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.979578 AGCAAAATGAGTGAATGTACATTTTAA 57.020 25.926 21.63 8.70 45.06 1.52
96 97 6.582437 TTTTTGCGAGAAAAACTTCCAATC 57.418 33.333 0.00 0.00 0.00 2.67
97 98 5.514274 TTTGCGAGAAAAACTTCCAATCT 57.486 34.783 0.00 0.00 0.00 2.40
98 99 6.627395 TTTGCGAGAAAAACTTCCAATCTA 57.373 33.333 0.00 0.00 0.00 1.98
99 100 6.817765 TTGCGAGAAAAACTTCCAATCTAT 57.182 33.333 0.00 0.00 0.00 1.98
100 101 6.817765 TGCGAGAAAAACTTCCAATCTATT 57.182 33.333 0.00 0.00 0.00 1.73
101 102 6.842163 TGCGAGAAAAACTTCCAATCTATTC 58.158 36.000 0.00 0.00 0.00 1.75
102 103 6.429692 TGCGAGAAAAACTTCCAATCTATTCA 59.570 34.615 0.00 0.00 0.00 2.57
103 104 7.121168 TGCGAGAAAAACTTCCAATCTATTCAT 59.879 33.333 0.00 0.00 0.00 2.57
104 105 7.641802 GCGAGAAAAACTTCCAATCTATTCATC 59.358 37.037 0.00 0.00 0.00 2.92
105 106 8.887717 CGAGAAAAACTTCCAATCTATTCATCT 58.112 33.333 0.00 0.00 0.00 2.90
112 113 9.690913 AACTTCCAATCTATTCATCTTCAATCA 57.309 29.630 0.00 0.00 0.00 2.57
113 114 9.863650 ACTTCCAATCTATTCATCTTCAATCAT 57.136 29.630 0.00 0.00 0.00 2.45
115 116 8.631480 TCCAATCTATTCATCTTCAATCATGG 57.369 34.615 0.00 0.00 0.00 3.66
116 117 8.222637 TCCAATCTATTCATCTTCAATCATGGT 58.777 33.333 0.00 0.00 0.00 3.55
117 118 9.511272 CCAATCTATTCATCTTCAATCATGGTA 57.489 33.333 0.00 0.00 0.00 3.25
122 123 9.987272 CTATTCATCTTCAATCATGGTAGTACA 57.013 33.333 2.06 0.00 0.00 2.90
124 125 8.492673 TTCATCTTCAATCATGGTAGTACAAC 57.507 34.615 2.06 0.00 0.00 3.32
125 126 6.756542 TCATCTTCAATCATGGTAGTACAACG 59.243 38.462 2.06 0.00 0.00 4.10
126 127 6.275494 TCTTCAATCATGGTAGTACAACGA 57.725 37.500 2.06 0.00 0.00 3.85
127 128 6.693466 TCTTCAATCATGGTAGTACAACGAA 58.307 36.000 2.06 0.00 0.00 3.85
128 129 6.588756 TCTTCAATCATGGTAGTACAACGAAC 59.411 38.462 2.06 0.00 0.00 3.95
129 130 5.785243 TCAATCATGGTAGTACAACGAACA 58.215 37.500 2.06 0.00 0.00 3.18
130 131 5.636121 TCAATCATGGTAGTACAACGAACAC 59.364 40.000 2.06 0.00 0.00 3.32
131 132 4.859304 TCATGGTAGTACAACGAACACT 57.141 40.909 2.06 0.00 0.00 3.55
132 133 5.963176 TCATGGTAGTACAACGAACACTA 57.037 39.130 2.06 0.00 0.00 2.74
133 134 5.946298 TCATGGTAGTACAACGAACACTAG 58.054 41.667 2.06 0.00 0.00 2.57
134 135 5.706833 TCATGGTAGTACAACGAACACTAGA 59.293 40.000 2.06 0.00 0.00 2.43
135 136 6.207221 TCATGGTAGTACAACGAACACTAGAA 59.793 38.462 2.06 0.00 0.00 2.10
136 137 6.389830 TGGTAGTACAACGAACACTAGAAA 57.610 37.500 2.06 0.00 0.00 2.52
137 138 6.985117 TGGTAGTACAACGAACACTAGAAAT 58.015 36.000 2.06 0.00 0.00 2.17
138 139 8.109705 TGGTAGTACAACGAACACTAGAAATA 57.890 34.615 2.06 0.00 0.00 1.40
139 140 8.575589 TGGTAGTACAACGAACACTAGAAATAA 58.424 33.333 2.06 0.00 0.00 1.40
140 141 9.578439 GGTAGTACAACGAACACTAGAAATAAT 57.422 33.333 2.06 0.00 0.00 1.28
167 168 8.786826 AAAATTACATCAAGATTCGTAGACCA 57.213 30.769 0.00 0.00 34.32 4.02
168 169 7.772332 AATTACATCAAGATTCGTAGACCAC 57.228 36.000 0.00 0.00 34.32 4.16
169 170 4.124851 ACATCAAGATTCGTAGACCACC 57.875 45.455 0.00 0.00 34.32 4.61
170 171 3.769844 ACATCAAGATTCGTAGACCACCT 59.230 43.478 0.00 0.00 34.32 4.00
171 172 4.223032 ACATCAAGATTCGTAGACCACCTT 59.777 41.667 0.00 0.00 34.32 3.50
172 173 4.188247 TCAAGATTCGTAGACCACCTTG 57.812 45.455 0.00 0.00 34.32 3.61
173 174 2.673368 CAAGATTCGTAGACCACCTTGC 59.327 50.000 0.00 0.00 34.32 4.01
174 175 1.135083 AGATTCGTAGACCACCTTGCG 60.135 52.381 0.00 0.00 34.32 4.85
175 176 0.892755 ATTCGTAGACCACCTTGCGA 59.107 50.000 0.00 0.00 34.32 5.10
176 177 0.038892 TTCGTAGACCACCTTGCGAC 60.039 55.000 0.00 0.00 34.32 5.19
177 178 1.800315 CGTAGACCACCTTGCGACG 60.800 63.158 0.00 0.00 0.00 5.12
178 179 1.582968 GTAGACCACCTTGCGACGA 59.417 57.895 0.00 0.00 0.00 4.20
179 180 0.731855 GTAGACCACCTTGCGACGAC 60.732 60.000 0.00 0.00 0.00 4.34
180 181 0.892358 TAGACCACCTTGCGACGACT 60.892 55.000 0.00 0.00 0.00 4.18
181 182 0.892358 AGACCACCTTGCGACGACTA 60.892 55.000 0.00 0.00 0.00 2.59
182 183 0.731855 GACCACCTTGCGACGACTAC 60.732 60.000 0.00 0.00 0.00 2.73
183 184 1.287815 CCACCTTGCGACGACTACA 59.712 57.895 0.00 0.00 0.00 2.74
184 185 0.319211 CCACCTTGCGACGACTACAA 60.319 55.000 0.00 0.00 0.00 2.41
185 186 1.060713 CACCTTGCGACGACTACAAG 58.939 55.000 0.00 2.34 40.36 3.16
186 187 0.666577 ACCTTGCGACGACTACAAGC 60.667 55.000 0.00 0.00 39.55 4.01
187 188 0.666274 CCTTGCGACGACTACAAGCA 60.666 55.000 0.00 0.00 39.55 3.91
188 189 0.435008 CTTGCGACGACTACAAGCAC 59.565 55.000 0.00 0.00 37.57 4.40
189 190 0.031585 TTGCGACGACTACAAGCACT 59.968 50.000 0.00 0.00 37.57 4.40
190 191 0.663269 TGCGACGACTACAAGCACTG 60.663 55.000 0.00 0.00 32.43 3.66
191 192 0.386858 GCGACGACTACAAGCACTGA 60.387 55.000 0.00 0.00 0.00 3.41
192 193 1.929038 GCGACGACTACAAGCACTGAA 60.929 52.381 0.00 0.00 0.00 3.02
193 194 1.979469 CGACGACTACAAGCACTGAAG 59.021 52.381 0.00 0.00 0.00 3.02
194 195 1.721926 GACGACTACAAGCACTGAAGC 59.278 52.381 0.00 0.00 0.00 3.86
195 196 0.710567 CGACTACAAGCACTGAAGCG 59.289 55.000 0.00 0.00 40.15 4.68
196 197 1.666023 CGACTACAAGCACTGAAGCGA 60.666 52.381 0.00 0.00 40.15 4.93
197 198 1.989165 GACTACAAGCACTGAAGCGAG 59.011 52.381 0.00 0.00 40.15 5.03
198 199 0.718343 CTACAAGCACTGAAGCGAGC 59.282 55.000 0.00 0.00 40.15 5.03
199 200 0.670546 TACAAGCACTGAAGCGAGCC 60.671 55.000 0.00 0.00 40.15 4.70
200 201 2.740055 AAGCACTGAAGCGAGCCG 60.740 61.111 0.00 0.00 40.15 5.52
201 202 3.226429 AAGCACTGAAGCGAGCCGA 62.226 57.895 0.00 0.00 40.15 5.54
202 203 2.715532 AAGCACTGAAGCGAGCCGAA 62.716 55.000 0.00 0.00 40.15 4.30
203 204 2.734673 GCACTGAAGCGAGCCGAAG 61.735 63.158 0.00 0.00 0.00 3.79
226 227 2.969238 CCGCTGTCATCGCCCATC 60.969 66.667 0.00 0.00 0.00 3.51
227 228 2.969238 CGCTGTCATCGCCCATCC 60.969 66.667 0.00 0.00 0.00 3.51
228 229 2.592861 GCTGTCATCGCCCATCCC 60.593 66.667 0.00 0.00 0.00 3.85
229 230 3.112205 GCTGTCATCGCCCATCCCT 62.112 63.158 0.00 0.00 0.00 4.20
230 231 1.070445 CTGTCATCGCCCATCCCTC 59.930 63.158 0.00 0.00 0.00 4.30
231 232 2.029666 GTCATCGCCCATCCCTCG 59.970 66.667 0.00 0.00 0.00 4.63
232 233 3.928779 TCATCGCCCATCCCTCGC 61.929 66.667 0.00 0.00 0.00 5.03
233 234 4.996434 CATCGCCCATCCCTCGCC 62.996 72.222 0.00 0.00 0.00 5.54
250 251 3.061848 CGGAGCCGGGCAAATGTT 61.062 61.111 23.09 0.00 35.56 2.71
251 252 2.573340 GGAGCCGGGCAAATGTTG 59.427 61.111 23.09 0.00 0.00 3.33
252 253 2.275380 GGAGCCGGGCAAATGTTGT 61.275 57.895 23.09 0.00 0.00 3.32
253 254 1.665442 GAGCCGGGCAAATGTTGTT 59.335 52.632 23.09 0.00 0.00 2.83
254 255 0.667184 GAGCCGGGCAAATGTTGTTG 60.667 55.000 23.09 0.00 0.00 3.33
255 256 1.068921 GCCGGGCAAATGTTGTTGT 59.931 52.632 15.62 0.00 0.00 3.32
256 257 0.315568 GCCGGGCAAATGTTGTTGTA 59.684 50.000 15.62 0.00 0.00 2.41
257 258 1.668628 GCCGGGCAAATGTTGTTGTAG 60.669 52.381 15.62 0.00 0.00 2.74
258 259 1.611491 CCGGGCAAATGTTGTTGTAGT 59.389 47.619 0.00 0.00 0.00 2.73
259 260 2.814919 CCGGGCAAATGTTGTTGTAGTA 59.185 45.455 0.00 0.00 0.00 1.82
260 261 3.119990 CCGGGCAAATGTTGTTGTAGTAG 60.120 47.826 0.00 0.00 0.00 2.57
261 262 3.749088 CGGGCAAATGTTGTTGTAGTAGA 59.251 43.478 0.00 0.00 0.00 2.59
262 263 4.378046 CGGGCAAATGTTGTTGTAGTAGAC 60.378 45.833 0.00 0.00 0.00 2.59
263 264 4.517453 GGGCAAATGTTGTTGTAGTAGACA 59.483 41.667 0.00 0.00 35.78 3.41
264 265 5.334879 GGGCAAATGTTGTTGTAGTAGACAG 60.335 44.000 0.00 0.00 39.88 3.51
265 266 5.238650 GGCAAATGTTGTTGTAGTAGACAGT 59.761 40.000 0.00 0.00 39.88 3.55
266 267 6.363473 GCAAATGTTGTTGTAGTAGACAGTC 58.637 40.000 0.00 0.00 39.88 3.51
267 268 6.581370 CAAATGTTGTTGTAGTAGACAGTCG 58.419 40.000 0.00 0.00 39.88 4.18
268 269 4.233123 TGTTGTTGTAGTAGACAGTCGG 57.767 45.455 0.00 0.00 39.88 4.79
269 270 3.005050 TGTTGTTGTAGTAGACAGTCGGG 59.995 47.826 0.00 0.00 39.88 5.14
270 271 3.144657 TGTTGTAGTAGACAGTCGGGA 57.855 47.619 0.00 0.00 39.88 5.14
271 272 3.489355 TGTTGTAGTAGACAGTCGGGAA 58.511 45.455 0.00 0.00 39.88 3.97
272 273 3.504906 TGTTGTAGTAGACAGTCGGGAAG 59.495 47.826 0.00 0.00 39.88 3.46
273 274 3.430042 TGTAGTAGACAGTCGGGAAGT 57.570 47.619 0.00 0.00 32.86 3.01
274 275 3.341823 TGTAGTAGACAGTCGGGAAGTC 58.658 50.000 0.00 0.00 32.86 3.01
275 276 1.451067 AGTAGACAGTCGGGAAGTCG 58.549 55.000 0.00 0.00 37.36 4.18
276 277 1.163554 GTAGACAGTCGGGAAGTCGT 58.836 55.000 0.00 0.00 37.36 4.34
277 278 1.130186 GTAGACAGTCGGGAAGTCGTC 59.870 57.143 0.00 0.00 37.36 4.20
278 279 0.536687 AGACAGTCGGGAAGTCGTCA 60.537 55.000 0.00 0.00 37.36 4.35
279 280 0.526662 GACAGTCGGGAAGTCGTCAT 59.473 55.000 0.00 0.00 0.00 3.06
280 281 0.243907 ACAGTCGGGAAGTCGTCATG 59.756 55.000 0.00 0.00 0.00 3.07
281 282 1.078759 CAGTCGGGAAGTCGTCATGC 61.079 60.000 0.00 0.00 0.00 4.06
282 283 1.215647 GTCGGGAAGTCGTCATGCT 59.784 57.895 0.00 0.00 0.00 3.79
283 284 0.454600 GTCGGGAAGTCGTCATGCTA 59.545 55.000 0.00 0.00 0.00 3.49
284 285 1.135199 GTCGGGAAGTCGTCATGCTAA 60.135 52.381 0.00 0.00 0.00 3.09
285 286 1.134367 TCGGGAAGTCGTCATGCTAAG 59.866 52.381 0.00 0.00 0.00 2.18
286 287 1.802880 CGGGAAGTCGTCATGCTAAGG 60.803 57.143 0.00 0.00 0.00 2.69
287 288 1.291132 GGAAGTCGTCATGCTAAGGC 58.709 55.000 0.00 0.00 39.26 4.35
288 289 1.291132 GAAGTCGTCATGCTAAGGCC 58.709 55.000 0.00 0.00 37.74 5.19
289 290 0.107654 AAGTCGTCATGCTAAGGCCC 60.108 55.000 0.00 0.00 37.74 5.80
290 291 1.883084 GTCGTCATGCTAAGGCCCG 60.883 63.158 0.00 0.00 37.74 6.13
291 292 2.588877 CGTCATGCTAAGGCCCGG 60.589 66.667 0.00 0.00 37.74 5.73
292 293 2.590092 GTCATGCTAAGGCCCGGT 59.410 61.111 0.00 0.00 37.74 5.28
293 294 1.827394 GTCATGCTAAGGCCCGGTA 59.173 57.895 0.00 0.00 37.74 4.02
294 295 0.249911 GTCATGCTAAGGCCCGGTAG 60.250 60.000 0.00 0.00 37.74 3.18
295 296 0.397957 TCATGCTAAGGCCCGGTAGA 60.398 55.000 0.00 0.00 37.74 2.59
296 297 0.468226 CATGCTAAGGCCCGGTAGAA 59.532 55.000 0.00 0.00 37.74 2.10
297 298 0.468648 ATGCTAAGGCCCGGTAGAAC 59.531 55.000 0.00 0.00 37.74 3.01
298 299 1.145598 GCTAAGGCCCGGTAGAACC 59.854 63.158 0.00 0.00 34.05 3.62
299 300 1.619807 GCTAAGGCCCGGTAGAACCA 61.620 60.000 0.00 0.00 38.47 3.67
300 301 0.906775 CTAAGGCCCGGTAGAACCAA 59.093 55.000 0.00 0.00 38.47 3.67
301 302 0.614812 TAAGGCCCGGTAGAACCAAC 59.385 55.000 0.00 0.00 38.47 3.77
302 303 2.435410 GGCCCGGTAGAACCAACG 60.435 66.667 0.00 0.00 38.47 4.10
303 304 3.122971 GCCCGGTAGAACCAACGC 61.123 66.667 0.00 0.00 38.47 4.84
304 305 2.344500 CCCGGTAGAACCAACGCA 59.656 61.111 0.00 0.00 38.47 5.24
305 306 2.030958 CCCGGTAGAACCAACGCAC 61.031 63.158 0.00 0.00 38.47 5.34
306 307 2.030958 CCGGTAGAACCAACGCACC 61.031 63.158 0.00 0.00 38.47 5.01
307 308 1.301087 CGGTAGAACCAACGCACCA 60.301 57.895 0.00 0.00 38.47 4.17
308 309 1.289109 CGGTAGAACCAACGCACCAG 61.289 60.000 0.00 0.00 38.47 4.00
309 310 0.034337 GGTAGAACCAACGCACCAGA 59.966 55.000 0.00 0.00 38.42 3.86
310 311 1.541670 GGTAGAACCAACGCACCAGAA 60.542 52.381 0.00 0.00 38.42 3.02
311 312 1.529865 GTAGAACCAACGCACCAGAAC 59.470 52.381 0.00 0.00 0.00 3.01
312 313 0.107410 AGAACCAACGCACCAGAACA 60.107 50.000 0.00 0.00 0.00 3.18
313 314 0.307760 GAACCAACGCACCAGAACAG 59.692 55.000 0.00 0.00 0.00 3.16
314 315 1.724582 AACCAACGCACCAGAACAGC 61.725 55.000 0.00 0.00 0.00 4.40
315 316 2.186160 CCAACGCACCAGAACAGCA 61.186 57.895 0.00 0.00 0.00 4.41
316 317 1.723608 CCAACGCACCAGAACAGCAA 61.724 55.000 0.00 0.00 0.00 3.91
317 318 0.592247 CAACGCACCAGAACAGCAAC 60.592 55.000 0.00 0.00 0.00 4.17
318 319 1.724582 AACGCACCAGAACAGCAACC 61.725 55.000 0.00 0.00 0.00 3.77
319 320 2.639286 GCACCAGAACAGCAACCG 59.361 61.111 0.00 0.00 0.00 4.44
320 321 2.639286 CACCAGAACAGCAACCGC 59.361 61.111 0.00 0.00 38.99 5.68
321 322 2.594592 ACCAGAACAGCAACCGCC 60.595 61.111 0.00 0.00 39.83 6.13
322 323 3.726517 CCAGAACAGCAACCGCCG 61.727 66.667 0.00 0.00 39.83 6.46
323 324 4.389576 CAGAACAGCAACCGCCGC 62.390 66.667 0.00 0.00 39.83 6.53
324 325 4.927782 AGAACAGCAACCGCCGCA 62.928 61.111 0.00 0.00 39.83 5.69
325 326 4.389576 GAACAGCAACCGCCGCAG 62.390 66.667 0.00 0.00 39.83 5.18
326 327 4.927782 AACAGCAACCGCCGCAGA 62.928 61.111 0.00 0.00 39.83 4.26
327 328 4.704833 ACAGCAACCGCCGCAGAT 62.705 61.111 0.00 0.00 39.83 2.90
328 329 4.170062 CAGCAACCGCCGCAGATG 62.170 66.667 0.00 0.00 39.83 2.90
329 330 4.393155 AGCAACCGCCGCAGATGA 62.393 61.111 0.00 0.00 39.83 2.92
330 331 3.430862 GCAACCGCCGCAGATGAA 61.431 61.111 0.00 0.00 0.00 2.57
331 332 2.787249 CAACCGCCGCAGATGAAG 59.213 61.111 0.00 0.00 0.00 3.02
332 333 1.741401 CAACCGCCGCAGATGAAGA 60.741 57.895 0.00 0.00 0.00 2.87
333 334 1.448540 AACCGCCGCAGATGAAGAG 60.449 57.895 0.00 0.00 0.00 2.85
334 335 2.172483 AACCGCCGCAGATGAAGAGT 62.172 55.000 0.00 0.00 0.00 3.24
335 336 2.169789 CCGCCGCAGATGAAGAGTG 61.170 63.158 0.00 0.00 0.00 3.51
336 337 1.446792 CGCCGCAGATGAAGAGTGT 60.447 57.895 0.00 0.00 0.00 3.55
337 338 0.179137 CGCCGCAGATGAAGAGTGTA 60.179 55.000 0.00 0.00 0.00 2.90
338 339 1.565305 GCCGCAGATGAAGAGTGTAG 58.435 55.000 0.00 0.00 0.00 2.74
339 340 1.135139 GCCGCAGATGAAGAGTGTAGA 59.865 52.381 0.00 0.00 0.00 2.59
340 341 2.223923 GCCGCAGATGAAGAGTGTAGAT 60.224 50.000 0.00 0.00 0.00 1.98
341 342 3.637432 CCGCAGATGAAGAGTGTAGATC 58.363 50.000 0.00 0.00 0.00 2.75
342 343 3.067320 CCGCAGATGAAGAGTGTAGATCA 59.933 47.826 0.00 0.00 0.00 2.92
343 344 4.440663 CCGCAGATGAAGAGTGTAGATCAA 60.441 45.833 0.00 0.00 0.00 2.57
344 345 4.739228 CGCAGATGAAGAGTGTAGATCAAG 59.261 45.833 0.00 0.00 0.00 3.02
345 346 5.449725 CGCAGATGAAGAGTGTAGATCAAGA 60.450 44.000 0.00 0.00 0.00 3.02
346 347 5.978919 GCAGATGAAGAGTGTAGATCAAGAG 59.021 44.000 0.00 0.00 0.00 2.85
347 348 6.506147 CAGATGAAGAGTGTAGATCAAGAGG 58.494 44.000 0.00 0.00 0.00 3.69
348 349 6.320926 CAGATGAAGAGTGTAGATCAAGAGGA 59.679 42.308 0.00 0.00 0.00 3.71
349 350 7.014518 CAGATGAAGAGTGTAGATCAAGAGGAT 59.985 40.741 0.00 0.00 39.53 3.24
359 360 4.494091 GATCAAGAGGATCCAACCTGAA 57.506 45.455 15.82 0.84 45.58 3.02
360 361 3.988976 TCAAGAGGATCCAACCTGAAG 57.011 47.619 15.82 2.85 40.73 3.02
361 362 3.520696 TCAAGAGGATCCAACCTGAAGA 58.479 45.455 15.82 4.98 40.73 2.87
362 363 3.261897 TCAAGAGGATCCAACCTGAAGAC 59.738 47.826 15.82 0.00 40.73 3.01
363 364 3.197927 AGAGGATCCAACCTGAAGACT 57.802 47.619 15.82 0.00 40.73 3.24
364 365 3.525862 AGAGGATCCAACCTGAAGACTT 58.474 45.455 15.82 0.00 40.73 3.01
365 366 4.689062 AGAGGATCCAACCTGAAGACTTA 58.311 43.478 15.82 0.00 40.73 2.24
366 367 5.284582 AGAGGATCCAACCTGAAGACTTAT 58.715 41.667 15.82 0.00 40.73 1.73
367 368 6.444704 AGAGGATCCAACCTGAAGACTTATA 58.555 40.000 15.82 0.00 40.73 0.98
368 369 7.079048 AGAGGATCCAACCTGAAGACTTATAT 58.921 38.462 15.82 0.00 40.73 0.86
369 370 7.570607 AGAGGATCCAACCTGAAGACTTATATT 59.429 37.037 15.82 0.00 40.73 1.28
370 371 8.107196 AGGATCCAACCTGAAGACTTATATTT 57.893 34.615 15.82 0.00 39.01 1.40
371 372 9.225682 AGGATCCAACCTGAAGACTTATATTTA 57.774 33.333 15.82 0.00 39.01 1.40
372 373 9.495572 GGATCCAACCTGAAGACTTATATTTAG 57.504 37.037 6.95 0.00 0.00 1.85
373 374 9.495572 GATCCAACCTGAAGACTTATATTTAGG 57.504 37.037 0.00 0.00 38.46 2.69
374 375 8.618240 TCCAACCTGAAGACTTATATTTAGGA 57.382 34.615 3.11 0.00 35.33 2.94
375 376 9.053472 TCCAACCTGAAGACTTATATTTAGGAA 57.947 33.333 3.11 0.00 35.33 3.36
376 377 9.110502 CCAACCTGAAGACTTATATTTAGGAAC 57.889 37.037 3.11 0.00 35.33 3.62
377 378 8.818057 CAACCTGAAGACTTATATTTAGGAACG 58.182 37.037 3.11 0.00 35.33 3.95
378 379 8.075761 ACCTGAAGACTTATATTTAGGAACGT 57.924 34.615 3.11 0.00 35.33 3.99
379 380 9.193806 ACCTGAAGACTTATATTTAGGAACGTA 57.806 33.333 3.11 0.00 35.33 3.57
380 381 9.680315 CCTGAAGACTTATATTTAGGAACGTAG 57.320 37.037 0.00 0.00 35.33 3.51
381 382 9.182933 CTGAAGACTTATATTTAGGAACGTAGC 57.817 37.037 0.00 0.00 0.00 3.58
382 383 8.139989 TGAAGACTTATATTTAGGAACGTAGCC 58.860 37.037 0.00 0.00 0.00 3.93
388 389 8.524870 TTATATTTAGGAACGTAGCCGAAATC 57.475 34.615 22.55 2.17 40.01 2.17
410 411 1.602311 CAATGGCTCCTAGGTGCATC 58.398 55.000 31.19 18.46 36.47 3.91
424 425 2.877975 GCATCTGCACCCATTGTCT 58.122 52.632 0.00 0.00 41.59 3.41
440 441 8.522830 ACCCATTGTCTAAATACACATTTTGAG 58.477 33.333 0.00 0.00 36.83 3.02
467 468 8.716646 AGTTGAAAAATTCCGAACAAAAATCT 57.283 26.923 0.00 0.00 0.00 2.40
471 472 4.497473 AATTCCGAACAAAAATCTCGCA 57.503 36.364 0.00 0.00 0.00 5.10
483 484 4.801330 AAATCTCGCATGTATATCCGGA 57.199 40.909 6.61 6.61 0.00 5.14
491 492 5.184287 TCGCATGTATATCCGGACATTCTAA 59.816 40.000 6.12 0.00 34.01 2.10
520 521 4.150804 TGCACAAAGTTTTCGGTGAAAAAC 59.849 37.500 6.31 4.01 42.09 2.43
647 649 1.130955 CACCGAAACTTTGTGCATGC 58.869 50.000 11.82 11.82 0.00 4.06
664 666 2.309528 TGCACATAGAACATCCGGAC 57.690 50.000 6.12 0.00 0.00 4.79
681 1632 1.064952 GGACATACCGCGGGATTTTTG 59.935 52.381 31.76 19.13 0.00 2.44
687 1638 1.577421 CGCGGGATTTTTGTTCCGT 59.423 52.632 0.00 0.00 43.87 4.69
694 1645 5.164031 GCGGGATTTTTGTTCCGTATTTTTC 60.164 40.000 0.00 0.00 43.87 2.29
695 1646 5.346551 CGGGATTTTTGTTCCGTATTTTTCC 59.653 40.000 0.00 0.00 37.92 3.13
698 1649 6.702282 GGATTTTTGTTCCGTATTTTTCCACA 59.298 34.615 0.00 0.00 0.00 4.17
702 1653 7.701809 TTTGTTCCGTATTTTTCCACATTTC 57.298 32.000 0.00 0.00 0.00 2.17
755 1706 1.418637 ACCTAGAAGCCAAAACACCGA 59.581 47.619 0.00 0.00 0.00 4.69
764 1715 0.584876 CAAAACACCGAGTCCCGAAC 59.415 55.000 0.00 0.00 41.76 3.95
780 1731 2.540361 CCGAACGTAGGGAGTATCGTTG 60.540 54.545 6.53 0.71 44.47 4.10
907 1858 7.553760 GGGCACAATCAATTCCTATTTGATTTT 59.446 33.333 8.50 1.52 46.45 1.82
911 1862 7.553760 ACAATCAATTCCTATTTGATTTTGGGC 59.446 33.333 8.50 0.00 46.45 5.36
912 1863 6.617782 TCAATTCCTATTTGATTTTGGGCA 57.382 33.333 0.00 0.00 0.00 5.36
913 1864 6.405538 TCAATTCCTATTTGATTTTGGGCAC 58.594 36.000 0.00 0.00 0.00 5.01
914 1865 6.013898 TCAATTCCTATTTGATTTTGGGCACA 60.014 34.615 0.00 0.00 0.00 4.57
917 1868 5.976458 TCCTATTTGATTTTGGGCACAATC 58.024 37.500 0.06 0.00 36.29 2.67
918 1869 5.483231 TCCTATTTGATTTTGGGCACAATCA 59.517 36.000 0.06 0.46 37.58 2.57
919 1870 6.013898 TCCTATTTGATTTTGGGCACAATCAA 60.014 34.615 12.62 12.62 44.15 2.57
921 1872 3.399440 TGATTTTGGGCACAATCAACC 57.601 42.857 0.06 0.00 36.64 3.77
970 1950 3.668447 AGTAGAACAGAAGCACCATGTG 58.332 45.455 0.00 0.00 36.51 3.21
1241 2229 3.490759 GTGCATCGTGACGCCCAG 61.491 66.667 0.00 0.00 0.00 4.45
1263 2251 4.702081 GCGTCGCACGTCCAGACT 62.702 66.667 13.44 0.00 44.73 3.24
1407 2395 1.452651 CAAGCTCCATGCCGTCCAT 60.453 57.895 0.00 0.00 44.23 3.41
2577 6190 3.056328 GTGCCGCCACTTCCCTTC 61.056 66.667 0.00 0.00 38.93 3.46
2641 6254 6.975772 GTGTTTGACCAAATTGTAACTGCTAA 59.024 34.615 0.00 0.00 32.36 3.09
2796 6479 1.107945 CATGGGCAGCATCATTCACA 58.892 50.000 0.00 0.00 0.00 3.58
2797 6480 1.108776 ATGGGCAGCATCATTCACAC 58.891 50.000 0.00 0.00 0.00 3.82
2800 6483 1.547372 GGGCAGCATCATTCACACTTT 59.453 47.619 0.00 0.00 0.00 2.66
2801 6484 2.416431 GGGCAGCATCATTCACACTTTC 60.416 50.000 0.00 0.00 0.00 2.62
2807 6490 5.981315 CAGCATCATTCACACTTTCTTTTGT 59.019 36.000 0.00 0.00 0.00 2.83
2900 6583 6.430925 CAGGAGATACATTGAACTTGAACCAA 59.569 38.462 0.00 0.00 0.00 3.67
2906 6589 6.409524 ACATTGAACTTGAACCAACATGAT 57.590 33.333 0.00 0.00 0.00 2.45
2929 6612 0.171903 GCATCATGTTCGGCTTTGCT 59.828 50.000 0.00 0.00 0.00 3.91
2937 6620 3.637432 TGTTCGGCTTTGCTAAAACATG 58.363 40.909 0.00 0.00 0.00 3.21
2945 6628 1.908344 TGCTAAAACATGAGCTGCCA 58.092 45.000 0.00 0.00 39.54 4.92
2947 6630 1.466360 GCTAAAACATGAGCTGCCACG 60.466 52.381 0.00 0.00 35.73 4.94
2958 6641 1.196808 AGCTGCCACGTTACAAAATCG 59.803 47.619 0.00 0.00 0.00 3.34
2960 6643 2.834689 CTGCCACGTTACAAAATCGAC 58.165 47.619 0.00 0.00 0.00 4.20
2961 6644 2.210961 TGCCACGTTACAAAATCGACA 58.789 42.857 0.00 0.00 0.00 4.35
2962 6645 2.612672 TGCCACGTTACAAAATCGACAA 59.387 40.909 0.00 0.00 0.00 3.18
2963 6646 3.064958 TGCCACGTTACAAAATCGACAAA 59.935 39.130 0.00 0.00 0.00 2.83
2964 6647 3.662186 GCCACGTTACAAAATCGACAAAG 59.338 43.478 0.00 0.00 0.00 2.77
3266 6949 1.614525 TGCTCTCATGAGTGGGCCT 60.615 57.895 21.92 0.00 42.13 5.19
3272 6955 0.915872 TCATGAGTGGGCCTGTCCAT 60.916 55.000 4.53 0.07 39.26 3.41
3342 7025 1.143889 GGAAGATGGGCTAAAGGGAGG 59.856 57.143 0.00 0.00 0.00 4.30
3344 7027 1.813102 AGATGGGCTAAAGGGAGGAG 58.187 55.000 0.00 0.00 0.00 3.69
3355 7039 2.146779 GGGAGGAGAATGCCCTACC 58.853 63.158 0.00 0.00 46.90 3.18
3383 7067 1.002033 GTGAAAAGCACCAGACTGCAG 60.002 52.381 13.48 13.48 41.78 4.41
3393 7077 3.050275 GACTGCAGCGGGACAACC 61.050 66.667 15.27 0.00 0.00 3.77
3405 7089 1.066716 GGGACAACCGCTACATACACA 60.067 52.381 0.00 0.00 36.97 3.72
3442 7126 3.312697 CACCCCTATTTCTCGCTTTAAGC 59.687 47.826 6.92 6.92 38.02 3.09
3457 7141 2.521958 TAAGCGAGCACAGGGGAAGC 62.522 60.000 0.00 0.00 0.00 3.86
3460 7144 2.759795 GAGCACAGGGGAAGCCTT 59.240 61.111 0.00 0.00 0.00 4.35
3463 7147 2.115910 CACAGGGGAAGCCTTGCA 59.884 61.111 0.00 0.00 0.00 4.08
3465 7149 1.000396 ACAGGGGAAGCCTTGCATC 60.000 57.895 0.00 0.00 0.00 3.91
3476 7160 1.617018 CCTTGCATCGGGAGGAGACA 61.617 60.000 0.00 0.00 32.11 3.41
3480 7164 1.433879 CATCGGGAGGAGACACGAC 59.566 63.158 0.00 0.00 36.39 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 6.337356 AGATTGGAAGTTTTTCTCGCAAAAA 58.663 32.000 1.87 1.87 33.68 1.94
74 75 5.901552 AGATTGGAAGTTTTTCTCGCAAAA 58.098 33.333 0.00 0.00 33.68 2.44
75 76 5.514274 AGATTGGAAGTTTTTCTCGCAAA 57.486 34.783 0.00 0.00 33.68 3.68
76 77 6.817765 ATAGATTGGAAGTTTTTCTCGCAA 57.182 33.333 0.00 0.00 33.68 4.85
77 78 6.429692 TGAATAGATTGGAAGTTTTTCTCGCA 59.570 34.615 0.00 0.00 33.68 5.10
78 79 6.842163 TGAATAGATTGGAAGTTTTTCTCGC 58.158 36.000 0.00 0.00 33.68 5.03
79 80 8.887717 AGATGAATAGATTGGAAGTTTTTCTCG 58.112 33.333 0.00 0.00 33.68 4.04
86 87 9.690913 TGATTGAAGATGAATAGATTGGAAGTT 57.309 29.630 0.00 0.00 0.00 2.66
87 88 9.863650 ATGATTGAAGATGAATAGATTGGAAGT 57.136 29.630 0.00 0.00 0.00 3.01
89 90 9.074576 CCATGATTGAAGATGAATAGATTGGAA 57.925 33.333 0.00 0.00 0.00 3.53
90 91 8.222637 ACCATGATTGAAGATGAATAGATTGGA 58.777 33.333 0.00 0.00 0.00 3.53
91 92 8.405418 ACCATGATTGAAGATGAATAGATTGG 57.595 34.615 0.00 0.00 0.00 3.16
96 97 9.987272 TGTACTACCATGATTGAAGATGAATAG 57.013 33.333 0.00 0.00 0.00 1.73
98 99 9.113838 GTTGTACTACCATGATTGAAGATGAAT 57.886 33.333 0.00 0.00 0.00 2.57
99 100 7.277760 CGTTGTACTACCATGATTGAAGATGAA 59.722 37.037 0.00 0.00 0.00 2.57
100 101 6.756542 CGTTGTACTACCATGATTGAAGATGA 59.243 38.462 0.00 0.00 0.00 2.92
101 102 6.756542 TCGTTGTACTACCATGATTGAAGATG 59.243 38.462 0.00 0.00 0.00 2.90
102 103 6.873997 TCGTTGTACTACCATGATTGAAGAT 58.126 36.000 0.00 0.00 0.00 2.40
103 104 6.275494 TCGTTGTACTACCATGATTGAAGA 57.725 37.500 0.00 0.00 0.00 2.87
104 105 6.367695 TGTTCGTTGTACTACCATGATTGAAG 59.632 38.462 0.00 0.00 0.00 3.02
105 106 6.146510 GTGTTCGTTGTACTACCATGATTGAA 59.853 38.462 0.00 0.00 0.00 2.69
106 107 5.636121 GTGTTCGTTGTACTACCATGATTGA 59.364 40.000 0.00 0.00 0.00 2.57
107 108 5.637810 AGTGTTCGTTGTACTACCATGATTG 59.362 40.000 0.00 0.00 0.00 2.67
108 109 5.790593 AGTGTTCGTTGTACTACCATGATT 58.209 37.500 0.00 0.00 0.00 2.57
109 110 5.401531 AGTGTTCGTTGTACTACCATGAT 57.598 39.130 0.00 0.00 0.00 2.45
110 111 4.859304 AGTGTTCGTTGTACTACCATGA 57.141 40.909 0.00 0.00 0.00 3.07
111 112 5.946298 TCTAGTGTTCGTTGTACTACCATG 58.054 41.667 1.76 0.00 0.00 3.66
112 113 6.579666 TTCTAGTGTTCGTTGTACTACCAT 57.420 37.500 1.76 0.00 0.00 3.55
113 114 6.389830 TTTCTAGTGTTCGTTGTACTACCA 57.610 37.500 1.76 0.00 0.00 3.25
114 115 8.970691 TTATTTCTAGTGTTCGTTGTACTACC 57.029 34.615 1.76 0.00 0.00 3.18
141 142 9.226606 TGGTCTACGAATCTTGATGTAATTTTT 57.773 29.630 0.00 0.00 0.00 1.94
142 143 8.665685 GTGGTCTACGAATCTTGATGTAATTTT 58.334 33.333 0.00 0.00 0.00 1.82
143 144 7.280205 GGTGGTCTACGAATCTTGATGTAATTT 59.720 37.037 0.00 0.00 0.00 1.82
144 145 6.761714 GGTGGTCTACGAATCTTGATGTAATT 59.238 38.462 0.00 0.00 0.00 1.40
145 146 6.098409 AGGTGGTCTACGAATCTTGATGTAAT 59.902 38.462 0.00 0.00 0.00 1.89
146 147 5.421056 AGGTGGTCTACGAATCTTGATGTAA 59.579 40.000 0.00 0.00 0.00 2.41
147 148 4.954202 AGGTGGTCTACGAATCTTGATGTA 59.046 41.667 0.00 0.00 0.00 2.29
148 149 3.769844 AGGTGGTCTACGAATCTTGATGT 59.230 43.478 0.00 0.00 0.00 3.06
149 150 4.392921 AGGTGGTCTACGAATCTTGATG 57.607 45.455 0.00 0.00 0.00 3.07
150 151 4.759782 CAAGGTGGTCTACGAATCTTGAT 58.240 43.478 0.00 0.00 33.96 2.57
151 152 3.616560 GCAAGGTGGTCTACGAATCTTGA 60.617 47.826 10.12 0.00 33.96 3.02
152 153 2.673368 GCAAGGTGGTCTACGAATCTTG 59.327 50.000 0.00 0.00 34.86 3.02
153 154 2.674177 CGCAAGGTGGTCTACGAATCTT 60.674 50.000 0.00 0.00 0.00 2.40
154 155 1.135083 CGCAAGGTGGTCTACGAATCT 60.135 52.381 0.00 0.00 0.00 2.40
155 156 1.135199 TCGCAAGGTGGTCTACGAATC 60.135 52.381 0.00 0.00 33.23 2.52
156 157 0.892755 TCGCAAGGTGGTCTACGAAT 59.107 50.000 0.00 0.00 33.23 3.34
157 158 0.038892 GTCGCAAGGTGGTCTACGAA 60.039 55.000 0.00 0.00 36.42 3.85
158 159 1.582968 GTCGCAAGGTGGTCTACGA 59.417 57.895 0.00 0.00 33.58 3.43
159 160 1.800315 CGTCGCAAGGTGGTCTACG 60.800 63.158 0.00 0.00 38.47 3.51
160 161 0.731855 GTCGTCGCAAGGTGGTCTAC 60.732 60.000 0.00 0.00 38.47 2.59
161 162 0.892358 AGTCGTCGCAAGGTGGTCTA 60.892 55.000 0.00 0.00 38.47 2.59
162 163 0.892358 TAGTCGTCGCAAGGTGGTCT 60.892 55.000 0.00 0.00 38.47 3.85
163 164 0.731855 GTAGTCGTCGCAAGGTGGTC 60.732 60.000 0.00 0.00 38.47 4.02
164 165 1.288127 GTAGTCGTCGCAAGGTGGT 59.712 57.895 0.00 0.00 38.47 4.16
165 166 0.319211 TTGTAGTCGTCGCAAGGTGG 60.319 55.000 0.00 0.00 38.47 4.61
166 167 1.060713 CTTGTAGTCGTCGCAAGGTG 58.939 55.000 10.33 0.00 36.79 4.00
167 168 0.666577 GCTTGTAGTCGTCGCAAGGT 60.667 55.000 16.31 0.00 39.75 3.50
168 169 0.666274 TGCTTGTAGTCGTCGCAAGG 60.666 55.000 16.31 4.75 39.75 3.61
169 170 0.435008 GTGCTTGTAGTCGTCGCAAG 59.565 55.000 12.61 12.61 41.61 4.01
170 171 0.031585 AGTGCTTGTAGTCGTCGCAA 59.968 50.000 0.00 0.00 31.77 4.85
171 172 0.663269 CAGTGCTTGTAGTCGTCGCA 60.663 55.000 0.00 0.00 0.00 5.10
172 173 0.386858 TCAGTGCTTGTAGTCGTCGC 60.387 55.000 0.00 0.00 0.00 5.19
173 174 1.979469 CTTCAGTGCTTGTAGTCGTCG 59.021 52.381 0.00 0.00 0.00 5.12
174 175 1.721926 GCTTCAGTGCTTGTAGTCGTC 59.278 52.381 0.00 0.00 0.00 4.20
175 176 1.784525 GCTTCAGTGCTTGTAGTCGT 58.215 50.000 0.00 0.00 0.00 4.34
176 177 0.710567 CGCTTCAGTGCTTGTAGTCG 59.289 55.000 0.00 0.00 0.00 4.18
177 178 1.989165 CTCGCTTCAGTGCTTGTAGTC 59.011 52.381 0.00 0.00 0.00 2.59
178 179 1.937108 GCTCGCTTCAGTGCTTGTAGT 60.937 52.381 0.00 0.00 0.00 2.73
179 180 0.718343 GCTCGCTTCAGTGCTTGTAG 59.282 55.000 0.00 0.00 0.00 2.74
180 181 0.670546 GGCTCGCTTCAGTGCTTGTA 60.671 55.000 0.00 0.00 0.00 2.41
181 182 1.963338 GGCTCGCTTCAGTGCTTGT 60.963 57.895 0.00 0.00 0.00 3.16
182 183 2.866028 GGCTCGCTTCAGTGCTTG 59.134 61.111 0.00 0.00 0.00 4.01
183 184 2.715532 TTCGGCTCGCTTCAGTGCTT 62.716 55.000 0.00 0.00 0.00 3.91
184 185 3.226429 TTCGGCTCGCTTCAGTGCT 62.226 57.895 0.00 0.00 0.00 4.40
185 186 2.734673 CTTCGGCTCGCTTCAGTGC 61.735 63.158 0.00 0.00 0.00 4.40
186 187 2.097038 CCTTCGGCTCGCTTCAGTG 61.097 63.158 0.00 0.00 0.00 3.66
187 188 2.262915 CCTTCGGCTCGCTTCAGT 59.737 61.111 0.00 0.00 0.00 3.41
188 189 3.191539 GCCTTCGGCTCGCTTCAG 61.192 66.667 0.00 0.00 46.69 3.02
209 210 2.969238 GATGGGCGATGACAGCGG 60.969 66.667 15.74 0.00 35.00 5.52
210 211 2.969238 GGATGGGCGATGACAGCG 60.969 66.667 9.11 9.11 35.00 5.18
211 212 2.592861 GGGATGGGCGATGACAGC 60.593 66.667 0.00 0.00 0.00 4.40
212 213 1.070445 GAGGGATGGGCGATGACAG 59.930 63.158 0.00 0.00 0.00 3.51
213 214 2.796193 CGAGGGATGGGCGATGACA 61.796 63.158 0.00 0.00 0.00 3.58
214 215 2.029666 CGAGGGATGGGCGATGAC 59.970 66.667 0.00 0.00 0.00 3.06
215 216 3.928779 GCGAGGGATGGGCGATGA 61.929 66.667 0.00 0.00 0.00 2.92
216 217 4.996434 GGCGAGGGATGGGCGATG 62.996 72.222 0.00 0.00 0.00 3.84
233 234 3.061848 AACATTTGCCCGGCTCCG 61.062 61.111 11.61 0.48 39.44 4.63
234 235 1.815817 AACAACATTTGCCCGGCTCC 61.816 55.000 11.61 0.00 0.00 4.70
235 236 0.667184 CAACAACATTTGCCCGGCTC 60.667 55.000 11.61 0.00 0.00 4.70
236 237 1.367102 CAACAACATTTGCCCGGCT 59.633 52.632 11.61 0.00 0.00 5.52
237 238 0.315568 TACAACAACATTTGCCCGGC 59.684 50.000 1.04 1.04 0.00 6.13
238 239 1.611491 ACTACAACAACATTTGCCCGG 59.389 47.619 0.00 0.00 0.00 5.73
239 240 3.749088 TCTACTACAACAACATTTGCCCG 59.251 43.478 0.00 0.00 0.00 6.13
240 241 4.517453 TGTCTACTACAACAACATTTGCCC 59.483 41.667 0.00 0.00 34.29 5.36
241 242 5.238650 ACTGTCTACTACAACAACATTTGCC 59.761 40.000 0.00 0.00 37.74 4.52
242 243 6.300354 ACTGTCTACTACAACAACATTTGC 57.700 37.500 0.00 0.00 37.74 3.68
243 244 6.346598 CCGACTGTCTACTACAACAACATTTG 60.347 42.308 6.21 0.00 37.74 2.32
244 245 5.694910 CCGACTGTCTACTACAACAACATTT 59.305 40.000 6.21 0.00 37.74 2.32
245 246 5.227908 CCGACTGTCTACTACAACAACATT 58.772 41.667 6.21 0.00 37.74 2.71
246 247 4.321750 CCCGACTGTCTACTACAACAACAT 60.322 45.833 6.21 0.00 37.74 2.71
247 248 3.005050 CCCGACTGTCTACTACAACAACA 59.995 47.826 6.21 0.00 37.74 3.33
248 249 3.254166 TCCCGACTGTCTACTACAACAAC 59.746 47.826 6.21 0.00 37.74 3.32
249 250 3.489355 TCCCGACTGTCTACTACAACAA 58.511 45.455 6.21 0.00 37.74 2.83
250 251 3.144657 TCCCGACTGTCTACTACAACA 57.855 47.619 6.21 0.00 37.74 3.33
251 252 3.505293 ACTTCCCGACTGTCTACTACAAC 59.495 47.826 6.21 0.00 37.74 3.32
252 253 3.755378 GACTTCCCGACTGTCTACTACAA 59.245 47.826 6.21 0.00 37.74 2.41
253 254 3.341823 GACTTCCCGACTGTCTACTACA 58.658 50.000 6.21 0.00 36.42 2.74
254 255 2.351111 CGACTTCCCGACTGTCTACTAC 59.649 54.545 6.21 0.00 0.00 2.73
255 256 2.027745 ACGACTTCCCGACTGTCTACTA 60.028 50.000 6.21 0.00 0.00 1.82
256 257 1.271271 ACGACTTCCCGACTGTCTACT 60.271 52.381 6.21 0.00 0.00 2.57
257 258 1.130186 GACGACTTCCCGACTGTCTAC 59.870 57.143 6.21 0.00 0.00 2.59
258 259 1.271001 TGACGACTTCCCGACTGTCTA 60.271 52.381 6.21 0.00 0.00 2.59
259 260 0.536687 TGACGACTTCCCGACTGTCT 60.537 55.000 6.21 0.00 0.00 3.41
260 261 0.526662 ATGACGACTTCCCGACTGTC 59.473 55.000 0.00 0.00 0.00 3.51
261 262 0.243907 CATGACGACTTCCCGACTGT 59.756 55.000 0.00 0.00 0.00 3.55
262 263 1.078759 GCATGACGACTTCCCGACTG 61.079 60.000 0.00 0.00 0.00 3.51
263 264 1.215647 GCATGACGACTTCCCGACT 59.784 57.895 0.00 0.00 0.00 4.18
264 265 0.454600 TAGCATGACGACTTCCCGAC 59.545 55.000 0.00 0.00 0.00 4.79
265 266 1.134367 CTTAGCATGACGACTTCCCGA 59.866 52.381 0.00 0.00 0.00 5.14
266 267 1.560923 CTTAGCATGACGACTTCCCG 58.439 55.000 0.00 0.00 0.00 5.14
267 268 1.941325 CCTTAGCATGACGACTTCCC 58.059 55.000 0.00 0.00 0.00 3.97
268 269 1.291132 GCCTTAGCATGACGACTTCC 58.709 55.000 0.00 0.00 39.53 3.46
269 270 1.291132 GGCCTTAGCATGACGACTTC 58.709 55.000 0.00 0.00 42.56 3.01
270 271 0.107654 GGGCCTTAGCATGACGACTT 60.108 55.000 0.84 0.00 42.56 3.01
271 272 1.522569 GGGCCTTAGCATGACGACT 59.477 57.895 0.84 0.00 42.56 4.18
272 273 1.883084 CGGGCCTTAGCATGACGAC 60.883 63.158 0.84 0.00 42.56 4.34
273 274 2.499205 CGGGCCTTAGCATGACGA 59.501 61.111 0.84 0.00 42.56 4.20
274 275 2.023414 TACCGGGCCTTAGCATGACG 62.023 60.000 6.32 0.00 42.56 4.35
275 276 0.249911 CTACCGGGCCTTAGCATGAC 60.250 60.000 6.32 0.00 42.56 3.06
276 277 0.397957 TCTACCGGGCCTTAGCATGA 60.398 55.000 6.32 0.00 42.56 3.07
277 278 0.468226 TTCTACCGGGCCTTAGCATG 59.532 55.000 6.32 0.00 42.56 4.06
278 279 0.468648 GTTCTACCGGGCCTTAGCAT 59.531 55.000 6.32 0.00 42.56 3.79
279 280 1.619807 GGTTCTACCGGGCCTTAGCA 61.620 60.000 6.32 0.00 42.56 3.49
280 281 1.145598 GGTTCTACCGGGCCTTAGC 59.854 63.158 6.32 0.00 38.76 3.09
281 282 0.906775 TTGGTTCTACCGGGCCTTAG 59.093 55.000 6.32 2.05 42.58 2.18
282 283 0.614812 GTTGGTTCTACCGGGCCTTA 59.385 55.000 6.32 0.00 42.58 2.69
283 284 1.377612 GTTGGTTCTACCGGGCCTT 59.622 57.895 6.32 0.00 42.58 4.35
284 285 2.951101 CGTTGGTTCTACCGGGCCT 61.951 63.158 6.32 0.00 42.58 5.19
285 286 2.435410 CGTTGGTTCTACCGGGCC 60.435 66.667 6.32 0.00 42.58 5.80
286 287 3.122971 GCGTTGGTTCTACCGGGC 61.123 66.667 6.32 0.00 42.58 6.13
287 288 2.030958 GTGCGTTGGTTCTACCGGG 61.031 63.158 6.32 0.00 42.58 5.73
288 289 2.030958 GGTGCGTTGGTTCTACCGG 61.031 63.158 0.00 0.00 42.58 5.28
289 290 1.289109 CTGGTGCGTTGGTTCTACCG 61.289 60.000 0.00 0.00 42.58 4.02
290 291 0.034337 TCTGGTGCGTTGGTTCTACC 59.966 55.000 0.00 0.00 39.22 3.18
291 292 1.529865 GTTCTGGTGCGTTGGTTCTAC 59.470 52.381 0.00 0.00 0.00 2.59
292 293 1.139256 TGTTCTGGTGCGTTGGTTCTA 59.861 47.619 0.00 0.00 0.00 2.10
293 294 0.107410 TGTTCTGGTGCGTTGGTTCT 60.107 50.000 0.00 0.00 0.00 3.01
294 295 0.307760 CTGTTCTGGTGCGTTGGTTC 59.692 55.000 0.00 0.00 0.00 3.62
295 296 1.724582 GCTGTTCTGGTGCGTTGGTT 61.725 55.000 0.00 0.00 0.00 3.67
296 297 2.186826 GCTGTTCTGGTGCGTTGGT 61.187 57.895 0.00 0.00 0.00 3.67
297 298 1.723608 TTGCTGTTCTGGTGCGTTGG 61.724 55.000 0.00 0.00 0.00 3.77
298 299 0.592247 GTTGCTGTTCTGGTGCGTTG 60.592 55.000 0.00 0.00 0.00 4.10
299 300 1.724582 GGTTGCTGTTCTGGTGCGTT 61.725 55.000 0.00 0.00 0.00 4.84
300 301 2.186826 GGTTGCTGTTCTGGTGCGT 61.187 57.895 0.00 0.00 0.00 5.24
301 302 2.639286 GGTTGCTGTTCTGGTGCG 59.361 61.111 0.00 0.00 0.00 5.34
302 303 2.639286 CGGTTGCTGTTCTGGTGC 59.361 61.111 0.00 0.00 0.00 5.01
303 304 2.639286 GCGGTTGCTGTTCTGGTG 59.361 61.111 0.00 0.00 38.39 4.17
304 305 2.594592 GGCGGTTGCTGTTCTGGT 60.595 61.111 0.00 0.00 42.25 4.00
305 306 3.726517 CGGCGGTTGCTGTTCTGG 61.727 66.667 0.00 0.00 42.79 3.86
312 313 3.899981 TTCATCTGCGGCGGTTGCT 62.900 57.895 9.78 0.00 42.25 3.91
313 314 3.386867 CTTCATCTGCGGCGGTTGC 62.387 63.158 9.78 0.00 41.71 4.17
314 315 1.699656 CTCTTCATCTGCGGCGGTTG 61.700 60.000 9.78 12.61 0.00 3.77
315 316 1.448540 CTCTTCATCTGCGGCGGTT 60.449 57.895 9.78 0.00 0.00 4.44
316 317 2.185350 CTCTTCATCTGCGGCGGT 59.815 61.111 9.78 0.00 0.00 5.68
317 318 2.169789 CACTCTTCATCTGCGGCGG 61.170 63.158 9.78 1.35 0.00 6.13
318 319 0.179137 TACACTCTTCATCTGCGGCG 60.179 55.000 0.51 0.51 0.00 6.46
319 320 1.135139 TCTACACTCTTCATCTGCGGC 59.865 52.381 0.00 0.00 0.00 6.53
320 321 3.067320 TGATCTACACTCTTCATCTGCGG 59.933 47.826 0.00 0.00 0.00 5.69
321 322 4.298744 TGATCTACACTCTTCATCTGCG 57.701 45.455 0.00 0.00 0.00 5.18
322 323 5.900425 TCTTGATCTACACTCTTCATCTGC 58.100 41.667 0.00 0.00 0.00 4.26
323 324 6.320926 TCCTCTTGATCTACACTCTTCATCTG 59.679 42.308 0.00 0.00 0.00 2.90
324 325 6.430864 TCCTCTTGATCTACACTCTTCATCT 58.569 40.000 0.00 0.00 0.00 2.90
325 326 6.707440 TCCTCTTGATCTACACTCTTCATC 57.293 41.667 0.00 0.00 0.00 2.92
326 327 7.288810 GATCCTCTTGATCTACACTCTTCAT 57.711 40.000 0.00 0.00 45.46 2.57
327 328 6.707440 GATCCTCTTGATCTACACTCTTCA 57.293 41.667 0.00 0.00 45.46 3.02
339 340 4.080638 GTCTTCAGGTTGGATCCTCTTGAT 60.081 45.833 14.23 0.00 35.37 2.57
340 341 3.261897 GTCTTCAGGTTGGATCCTCTTGA 59.738 47.826 14.23 14.45 35.37 3.02
341 342 3.262915 AGTCTTCAGGTTGGATCCTCTTG 59.737 47.826 14.23 12.44 35.37 3.02
342 343 3.525862 AGTCTTCAGGTTGGATCCTCTT 58.474 45.455 14.23 0.00 35.37 2.85
343 344 3.197927 AGTCTTCAGGTTGGATCCTCT 57.802 47.619 14.23 5.19 35.37 3.69
344 345 3.990959 AAGTCTTCAGGTTGGATCCTC 57.009 47.619 14.23 6.14 35.37 3.71
345 346 7.698163 AATATAAGTCTTCAGGTTGGATCCT 57.302 36.000 14.23 0.00 38.51 3.24
346 347 9.495572 CTAAATATAAGTCTTCAGGTTGGATCC 57.504 37.037 4.20 4.20 0.00 3.36
347 348 9.495572 CCTAAATATAAGTCTTCAGGTTGGATC 57.504 37.037 0.00 0.00 0.00 3.36
348 349 9.225682 TCCTAAATATAAGTCTTCAGGTTGGAT 57.774 33.333 0.00 0.00 0.00 3.41
349 350 8.618240 TCCTAAATATAAGTCTTCAGGTTGGA 57.382 34.615 0.00 0.00 0.00 3.53
350 351 9.110502 GTTCCTAAATATAAGTCTTCAGGTTGG 57.889 37.037 0.00 0.00 0.00 3.77
351 352 8.818057 CGTTCCTAAATATAAGTCTTCAGGTTG 58.182 37.037 0.00 0.00 0.00 3.77
352 353 8.537858 ACGTTCCTAAATATAAGTCTTCAGGTT 58.462 33.333 0.00 0.00 0.00 3.50
353 354 8.075761 ACGTTCCTAAATATAAGTCTTCAGGT 57.924 34.615 0.00 0.00 0.00 4.00
354 355 9.680315 CTACGTTCCTAAATATAAGTCTTCAGG 57.320 37.037 0.00 0.00 0.00 3.86
355 356 9.182933 GCTACGTTCCTAAATATAAGTCTTCAG 57.817 37.037 0.00 0.00 0.00 3.02
356 357 8.139989 GGCTACGTTCCTAAATATAAGTCTTCA 58.860 37.037 0.00 0.00 0.00 3.02
357 358 7.325579 CGGCTACGTTCCTAAATATAAGTCTTC 59.674 40.741 0.00 0.00 34.81 2.87
358 359 7.013655 TCGGCTACGTTCCTAAATATAAGTCTT 59.986 37.037 0.00 0.00 41.85 3.01
359 360 6.488006 TCGGCTACGTTCCTAAATATAAGTCT 59.512 38.462 0.00 0.00 41.85 3.24
360 361 6.672147 TCGGCTACGTTCCTAAATATAAGTC 58.328 40.000 0.00 0.00 41.85 3.01
361 362 6.639632 TCGGCTACGTTCCTAAATATAAGT 57.360 37.500 0.00 0.00 41.85 2.24
362 363 7.935338 TTTCGGCTACGTTCCTAAATATAAG 57.065 36.000 0.00 0.00 41.85 1.73
363 364 7.326789 CGATTTCGGCTACGTTCCTAAATATAA 59.673 37.037 14.59 0.00 41.85 0.98
364 365 6.803320 CGATTTCGGCTACGTTCCTAAATATA 59.197 38.462 14.59 0.00 41.85 0.86
365 366 5.632347 CGATTTCGGCTACGTTCCTAAATAT 59.368 40.000 14.59 1.44 41.85 1.28
366 367 4.977963 CGATTTCGGCTACGTTCCTAAATA 59.022 41.667 14.59 0.00 41.85 1.40
367 368 3.800506 CGATTTCGGCTACGTTCCTAAAT 59.199 43.478 14.54 14.54 41.85 1.40
368 369 3.181397 CGATTTCGGCTACGTTCCTAAA 58.819 45.455 0.00 0.79 41.85 1.85
369 370 2.801063 CGATTTCGGCTACGTTCCTAA 58.199 47.619 0.00 0.00 41.85 2.69
370 371 2.480224 CGATTTCGGCTACGTTCCTA 57.520 50.000 0.00 0.00 41.85 2.94
371 372 3.340727 CGATTTCGGCTACGTTCCT 57.659 52.632 0.00 0.00 41.85 3.36
382 383 1.097547 AGGAGCCATTGCCGATTTCG 61.098 55.000 0.00 0.00 38.69 3.46
388 389 1.524621 CACCTAGGAGCCATTGCCG 60.525 63.158 17.98 0.00 38.69 5.69
410 411 4.699735 TGTGTATTTAGACAATGGGTGCAG 59.300 41.667 0.00 0.00 0.00 4.41
440 441 9.420966 GATTTTTGTTCGGAATTTTTCAACTTC 57.579 29.630 0.00 0.00 0.00 3.01
471 472 6.398918 GCACTTAGAATGTCCGGATATACAT 58.601 40.000 14.71 7.42 37.94 2.29
483 484 1.877637 TGTGCACGCACTTAGAATGT 58.122 45.000 21.76 0.00 46.30 2.71
491 492 1.793714 CGAAAACTTTGTGCACGCACT 60.794 47.619 21.76 0.68 46.30 4.40
647 649 4.307432 GGTATGTCCGGATGTTCTATGTG 58.693 47.826 7.81 0.00 0.00 3.21
664 666 2.478879 GGAACAAAAATCCCGCGGTATG 60.479 50.000 26.12 14.92 0.00 2.39
681 1632 7.701809 TTTGAAATGTGGAAAAATACGGAAC 57.298 32.000 0.00 0.00 0.00 3.62
702 1653 8.810427 GCATCCATTGTCTAAATACACATTTTG 58.190 33.333 0.00 0.00 35.88 2.44
727 1678 2.260844 TGGCTTCTAGGTGCATATGC 57.739 50.000 21.09 21.09 42.50 3.14
741 1692 0.822121 GGGACTCGGTGTTTTGGCTT 60.822 55.000 0.00 0.00 0.00 4.35
755 1706 0.620556 TACTCCCTACGTTCGGGACT 59.379 55.000 18.38 13.20 45.67 3.85
764 1715 6.069684 AGAAATACAACGATACTCCCTACG 57.930 41.667 0.00 0.00 0.00 3.51
907 1858 1.959508 GCCATAGGTTGATTGTGCCCA 60.960 52.381 0.00 0.00 0.00 5.36
911 1862 8.443160 CGTTTATATAGCCATAGGTTGATTGTG 58.557 37.037 0.00 0.00 0.00 3.33
912 1863 8.372459 TCGTTTATATAGCCATAGGTTGATTGT 58.628 33.333 0.00 0.00 0.00 2.71
913 1864 8.771920 TCGTTTATATAGCCATAGGTTGATTG 57.228 34.615 0.00 0.00 0.00 2.67
914 1865 8.041323 CCTCGTTTATATAGCCATAGGTTGATT 58.959 37.037 0.00 0.00 0.00 2.57
917 1868 6.590292 CACCTCGTTTATATAGCCATAGGTTG 59.410 42.308 0.00 0.00 32.61 3.77
918 1869 6.495872 TCACCTCGTTTATATAGCCATAGGTT 59.504 38.462 0.00 0.00 32.61 3.50
919 1870 6.014647 TCACCTCGTTTATATAGCCATAGGT 58.985 40.000 0.00 0.00 35.23 3.08
921 1872 7.870954 TGTTTCACCTCGTTTATATAGCCATAG 59.129 37.037 0.00 0.00 0.00 2.23
997 1980 1.742510 GCGCCATGCTTGCCATTTT 60.743 52.632 0.00 0.00 41.73 1.82
1070 2055 1.527380 TCGTTGTTGTTGGAGGGCC 60.527 57.895 0.00 0.00 0.00 5.80
1212 2200 1.003580 ACGATGCACAGTGGAGGATTT 59.996 47.619 1.84 0.00 0.00 2.17
1407 2395 2.970324 GCTTCGTGCGGGTTGACA 60.970 61.111 0.00 0.00 0.00 3.58
1490 2478 3.979497 CCGGGAAGCCCAACCCTT 61.979 66.667 3.03 0.00 45.83 3.95
1495 2483 4.109675 GCTAGCCGGGAAGCCCAA 62.110 66.667 2.29 0.00 45.83 4.12
2710 6392 7.859325 ACGTTATATCTGTAGCACCAAAATT 57.141 32.000 0.00 0.00 0.00 1.82
2739 6421 7.713764 AACTTGTTGGTTTTGAATTCTATGC 57.286 32.000 7.05 0.00 0.00 3.14
2777 6460 1.107945 TGTGAATGATGCTGCCCATG 58.892 50.000 0.00 0.00 33.29 3.66
2796 6479 7.275888 TGCACATTATCTCACAAAAGAAAGT 57.724 32.000 0.00 0.00 0.00 2.66
2797 6480 6.307318 GCTGCACATTATCTCACAAAAGAAAG 59.693 38.462 0.00 0.00 0.00 2.62
2800 6483 4.761227 TGCTGCACATTATCTCACAAAAGA 59.239 37.500 0.00 0.00 0.00 2.52
2801 6484 5.050644 TGCTGCACATTATCTCACAAAAG 57.949 39.130 0.00 0.00 0.00 2.27
2807 6490 5.008316 GTGAATGATGCTGCACATTATCTCA 59.992 40.000 21.68 13.86 39.84 3.27
2906 6589 0.035152 AAGCCGAACATGATGCAGGA 60.035 50.000 0.00 0.00 0.00 3.86
2929 6612 1.890876 ACGTGGCAGCTCATGTTTTA 58.109 45.000 0.00 0.00 33.52 1.52
2937 6620 2.724839 CGATTTTGTAACGTGGCAGCTC 60.725 50.000 0.00 0.00 0.00 4.09
3257 6940 2.039084 CCTATTATGGACAGGCCCACTC 59.961 54.545 0.00 0.00 39.34 3.51
3266 6949 5.122869 GTCTATACGACGCCTATTATGGACA 59.877 44.000 11.51 0.00 34.35 4.02
3306 6989 1.269703 TTCCTTTCCTAGCCCGACCC 61.270 60.000 0.00 0.00 0.00 4.46
3308 6991 1.192428 TCTTCCTTTCCTAGCCCGAC 58.808 55.000 0.00 0.00 0.00 4.79
3342 7025 0.680061 CCTACCGGTAGGGCATTCTC 59.320 60.000 42.01 0.00 46.96 2.87
3355 7039 2.551644 GTGCTTTTCACCCCTACCG 58.448 57.895 0.00 0.00 39.79 4.02
3393 7077 5.730802 CGGTTATTTTGTTGTGTATGTAGCG 59.269 40.000 0.00 0.00 0.00 4.26
3403 7087 2.223852 GGGTGCACGGTTATTTTGTTGT 60.224 45.455 11.45 0.00 0.00 3.32
3405 7089 1.341852 GGGGTGCACGGTTATTTTGTT 59.658 47.619 11.45 0.00 0.00 2.83
3442 7126 3.259633 AAGGCTTCCCCTGTGCTCG 62.260 63.158 0.00 0.00 45.62 5.03
3457 7141 1.144936 GTCTCCTCCCGATGCAAGG 59.855 63.158 4.72 4.72 0.00 3.61
3458 7142 0.460987 GTGTCTCCTCCCGATGCAAG 60.461 60.000 0.00 0.00 0.00 4.01
3460 7144 2.710902 CGTGTCTCCTCCCGATGCA 61.711 63.158 0.00 0.00 0.00 3.96
3463 7147 2.113433 CGTCGTGTCTCCTCCCGAT 61.113 63.158 0.00 0.00 0.00 4.18
3465 7149 3.812019 CCGTCGTGTCTCCTCCCG 61.812 72.222 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.