Multiple sequence alignment - TraesCS2D01G052100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G052100 chr2D 100.000 3301 0 0 1 3301 19850015 19846715 0.000000e+00 6096.0
1 TraesCS2D01G052100 chr2D 94.028 921 49 4 1818 2734 15229924 15230842 0.000000e+00 1391.0
2 TraesCS2D01G052100 chr2D 93.920 921 50 4 1818 2734 15265635 15266553 0.000000e+00 1386.0
3 TraesCS2D01G052100 chr2D 91.266 916 55 14 879 1789 15228915 15229810 0.000000e+00 1225.0
4 TraesCS2D01G052100 chr2D 91.138 914 60 13 879 1789 15264626 15265521 0.000000e+00 1219.0
5 TraesCS2D01G052100 chr2D 90.919 914 62 13 879 1789 15249718 15250613 0.000000e+00 1208.0
6 TraesCS2D01G052100 chr2D 93.624 298 18 1 4 300 15331511 15331808 8.410000e-121 444.0
7 TraesCS2D01G052100 chr2D 83.333 354 26 11 64 393 15248827 15249171 2.490000e-76 296.0
8 TraesCS2D01G052100 chr2D 83.333 354 26 11 64 393 15263735 15264079 2.490000e-76 296.0
9 TraesCS2D01G052100 chr2D 93.548 186 11 1 64 249 15218337 15218521 3.240000e-70 276.0
10 TraesCS2D01G052100 chr2D 91.045 134 12 0 260 393 15228235 15228368 7.280000e-42 182.0
11 TraesCS2D01G052100 chr2A 94.885 2659 88 19 651 3267 20365358 20368010 0.000000e+00 4113.0
12 TraesCS2D01G052100 chr2A 92.048 1094 68 12 706 1789 17300100 17301184 0.000000e+00 1520.0
13 TraesCS2D01G052100 chr2A 90.950 1116 54 14 1782 2880 17301251 17302336 0.000000e+00 1458.0
14 TraesCS2D01G052100 chr2A 91.246 594 44 3 64 656 17299399 17299985 0.000000e+00 802.0
15 TraesCS2D01G052100 chr2A 89.100 633 37 11 26 656 20364725 20365327 0.000000e+00 758.0
16 TraesCS2D01G052100 chrUn 92.308 1495 83 7 1815 3301 272512891 272514361 0.000000e+00 2095.0
17 TraesCS2D01G052100 chrUn 92.308 1495 83 7 1815 3301 288702016 288703486 0.000000e+00 2095.0
18 TraesCS2D01G052100 chrUn 90.944 1546 90 10 1782 3301 16658673 16660194 0.000000e+00 2034.0
19 TraesCS2D01G052100 chrUn 90.791 1542 96 10 1782 3301 16613514 16615031 0.000000e+00 2019.0
20 TraesCS2D01G052100 chrUn 94.848 1087 48 5 1818 2900 16443074 16441992 0.000000e+00 1690.0
21 TraesCS2D01G052100 chrUn 94.495 1090 52 5 1815 2900 344032373 344033458 0.000000e+00 1674.0
22 TraesCS2D01G052100 chrUn 92.069 1097 62 14 712 1789 16612357 16613447 0.000000e+00 1520.0
23 TraesCS2D01G052100 chrUn 92.062 1096 57 16 714 1789 16657521 16658606 0.000000e+00 1515.0
24 TraesCS2D01G052100 chrUn 91.674 1093 61 15 706 1789 233477235 233476164 0.000000e+00 1487.0
25 TraesCS2D01G052100 chrUn 89.550 1177 61 24 651 1789 366814084 366812932 0.000000e+00 1435.0
26 TraesCS2D01G052100 chrUn 89.380 1177 63 24 651 1789 16444332 16443180 0.000000e+00 1424.0
27 TraesCS2D01G052100 chrUn 93.777 916 51 4 1823 2734 266169999 266169086 0.000000e+00 1371.0
28 TraesCS2D01G052100 chrUn 93.777 916 51 4 1823 2734 379210521 379209608 0.000000e+00 1371.0
29 TraesCS2D01G052100 chrUn 91.266 916 55 14 879 1789 266171013 266170118 0.000000e+00 1225.0
30 TraesCS2D01G052100 chrUn 91.509 530 36 6 1261 1789 379211161 379210640 0.000000e+00 721.0
31 TraesCS2D01G052100 chrUn 91.509 530 36 6 1261 1789 379234392 379233871 0.000000e+00 721.0
32 TraesCS2D01G052100 chrUn 88.889 531 47 9 132 656 16444887 16444363 0.000000e+00 643.0
33 TraesCS2D01G052100 chrUn 88.701 531 48 9 132 656 366814639 366814115 3.590000e-179 638.0
34 TraesCS2D01G052100 chrUn 93.606 391 25 0 2911 3301 16548874 16549264 4.750000e-163 584.0
35 TraesCS2D01G052100 chrUn 93.606 391 25 0 2911 3301 203046954 203047344 4.750000e-163 584.0
36 TraesCS2D01G052100 chrUn 93.367 392 25 1 2911 3301 16441303 16440912 2.210000e-161 579.0
37 TraesCS2D01G052100 chrUn 93.557 388 24 1 2911 3297 233474049 233473662 7.940000e-161 577.0
38 TraesCS2D01G052100 chrUn 90.785 293 25 1 132 422 16611362 16611654 1.110000e-104 390.0
39 TraesCS2D01G052100 chrUn 90.102 293 27 1 132 422 16656976 16657268 2.400000e-101 379.0
40 TraesCS2D01G052100 chrUn 95.385 130 6 0 527 656 16657276 16657405 1.200000e-49 207.0
41 TraesCS2D01G052100 chrUn 85.124 121 17 1 536 656 426294715 426294834 4.470000e-24 122.0
42 TraesCS2D01G052100 chrUn 94.828 58 3 0 651 708 233477312 233477255 1.260000e-14 91.6
43 TraesCS2D01G052100 chr6B 87.153 1549 133 39 1777 3299 548949774 548951282 0.000000e+00 1698.0
44 TraesCS2D01G052100 chr6B 86.929 1553 135 38 1777 3299 549030286 549031800 0.000000e+00 1681.0
45 TraesCS2D01G052100 chr6B 89.362 1081 84 17 718 1789 548948660 548949718 0.000000e+00 1330.0
46 TraesCS2D01G052100 chr6B 89.362 1081 84 17 718 1789 549029172 549030230 0.000000e+00 1330.0
47 TraesCS2D01G052100 chr7D 90.128 1094 77 18 706 1789 110890640 110891712 0.000000e+00 1393.0
48 TraesCS2D01G052100 chr7D 88.689 999 80 17 1782 2757 110891780 110892768 0.000000e+00 1188.0
49 TraesCS2D01G052100 chr7A 89.843 1083 81 16 716 1789 116018857 116019919 0.000000e+00 1363.0
50 TraesCS2D01G052100 chr7A 93.590 78 4 1 651 728 116018765 116018841 7.490000e-22 115.0
51 TraesCS2D01G052100 chr7B 89.167 1080 87 14 718 1789 69912874 69913931 0.000000e+00 1319.0
52 TraesCS2D01G052100 chr7B 89.074 1080 88 14 718 1789 70069257 70070314 0.000000e+00 1314.0
53 TraesCS2D01G052100 chr7B 88.458 1109 99 19 1815 2915 70244707 70245794 0.000000e+00 1312.0
54 TraesCS2D01G052100 chr7B 86.043 1175 104 31 651 1789 69992665 69993815 0.000000e+00 1206.0
55 TraesCS2D01G052100 chr7B 85.950 121 16 1 536 656 70243293 70243412 9.610000e-26 128.0
56 TraesCS2D01G052100 chr7B 85.124 121 17 1 536 656 69912630 69912749 4.470000e-24 122.0
57 TraesCS2D01G052100 chr7B 85.124 121 17 1 536 656 70069013 70069132 4.470000e-24 122.0
58 TraesCS2D01G052100 chr7B 86.087 115 11 4 2841 2953 70071633 70071744 5.790000e-23 119.0
59 TraesCS2D01G052100 chr7B 93.590 78 4 1 651 728 69849508 69849584 7.490000e-22 115.0
60 TraesCS2D01G052100 chr7B 93.590 78 4 1 651 728 70243443 70243519 7.490000e-22 115.0
61 TraesCS2D01G052100 chr7B 92.308 78 5 1 651 728 69912780 69912856 3.480000e-20 110.0
62 TraesCS2D01G052100 chr2B 89.212 241 17 5 276 516 27406415 27406646 3.220000e-75 292.0
63 TraesCS2D01G052100 chr2B 87.111 225 25 3 69 289 27353079 27353303 5.470000e-63 252.0
64 TraesCS2D01G052100 chr2B 87.671 146 9 5 371 516 27249560 27249696 9.480000e-36 161.0
65 TraesCS2D01G052100 chr2B 87.671 146 9 5 371 516 27287154 27287290 9.480000e-36 161.0
66 TraesCS2D01G052100 chr2B 87.671 146 9 5 371 516 27355461 27355597 9.480000e-36 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G052100 chr2D 19846715 19850015 3300 True 6096.000000 6096 100.000000 1 3301 1 chr2D.!!$R1 3300
1 TraesCS2D01G052100 chr2D 15263735 15266553 2818 False 967.000000 1386 89.463667 64 2734 3 chr2D.!!$F5 2670
2 TraesCS2D01G052100 chr2D 15228235 15230842 2607 False 932.666667 1391 92.113000 260 2734 3 chr2D.!!$F3 2474
3 TraesCS2D01G052100 chr2D 15248827 15250613 1786 False 752.000000 1208 87.126000 64 1789 2 chr2D.!!$F4 1725
4 TraesCS2D01G052100 chr2A 20364725 20368010 3285 False 2435.500000 4113 91.992500 26 3267 2 chr2A.!!$F2 3241
5 TraesCS2D01G052100 chr2A 17299399 17302336 2937 False 1260.000000 1520 91.414667 64 2880 3 chr2A.!!$F1 2816
6 TraesCS2D01G052100 chrUn 272512891 272514361 1470 False 2095.000000 2095 92.308000 1815 3301 1 chrUn.!!$F3 1486
7 TraesCS2D01G052100 chrUn 288702016 288703486 1470 False 2095.000000 2095 92.308000 1815 3301 1 chrUn.!!$F4 1486
8 TraesCS2D01G052100 chrUn 344032373 344033458 1085 False 1674.000000 1674 94.495000 1815 2900 1 chrUn.!!$F5 1085
9 TraesCS2D01G052100 chrUn 16611362 16615031 3669 False 1309.666667 2019 91.215000 132 3301 3 chrUn.!!$F7 3169
10 TraesCS2D01G052100 chrUn 266169086 266171013 1927 True 1298.000000 1371 92.521500 879 2734 2 chrUn.!!$R4 1855
11 TraesCS2D01G052100 chrUn 16440912 16444887 3975 True 1084.000000 1690 91.621000 132 3301 4 chrUn.!!$R2 3169
12 TraesCS2D01G052100 chrUn 379209608 379211161 1553 True 1046.000000 1371 92.643000 1261 2734 2 chrUn.!!$R6 1473
13 TraesCS2D01G052100 chrUn 366812932 366814639 1707 True 1036.500000 1435 89.125500 132 1789 2 chrUn.!!$R5 1657
14 TraesCS2D01G052100 chrUn 16656976 16660194 3218 False 1033.750000 2034 92.123250 132 3301 4 chrUn.!!$F8 3169
15 TraesCS2D01G052100 chrUn 379233871 379234392 521 True 721.000000 721 91.509000 1261 1789 1 chrUn.!!$R1 528
16 TraesCS2D01G052100 chrUn 233473662 233477312 3650 True 718.533333 1487 93.353000 651 3297 3 chrUn.!!$R3 2646
17 TraesCS2D01G052100 chr6B 548948660 548951282 2622 False 1514.000000 1698 88.257500 718 3299 2 chr6B.!!$F1 2581
18 TraesCS2D01G052100 chr6B 549029172 549031800 2628 False 1505.500000 1681 88.145500 718 3299 2 chr6B.!!$F2 2581
19 TraesCS2D01G052100 chr7D 110890640 110892768 2128 False 1290.500000 1393 89.408500 706 2757 2 chr7D.!!$F1 2051
20 TraesCS2D01G052100 chr7A 116018765 116019919 1154 False 739.000000 1363 91.716500 651 1789 2 chr7A.!!$F1 1138
21 TraesCS2D01G052100 chr7B 69992665 69993815 1150 False 1206.000000 1206 86.043000 651 1789 1 chr7B.!!$F2 1138
22 TraesCS2D01G052100 chr7B 70069013 70071744 2731 False 518.333333 1314 86.761667 536 2953 3 chr7B.!!$F4 2417
23 TraesCS2D01G052100 chr7B 70243293 70245794 2501 False 518.333333 1312 89.332667 536 2915 3 chr7B.!!$F5 2379
24 TraesCS2D01G052100 chr7B 69912630 69913931 1301 False 517.000000 1319 88.866333 536 1789 3 chr7B.!!$F3 1253
25 TraesCS2D01G052100 chr2B 27353079 27355597 2518 False 206.500000 252 87.391000 69 516 2 chr2B.!!$F4 447

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 3257 0.178958 ACCCACGCCCCAAACAAATA 60.179 50.0 0.00 0.0 0.0 1.40 F
710 3307 0.319641 ACCTTCCTCGAGTCGTTTGC 60.320 55.0 13.12 0.0 0.0 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 4769 0.033504 TCACCAGCGACAGGAAGAAC 59.966 55.000 0.0 0.0 0.0 3.01 R
2423 5262 1.798813 GACAGACGACAATGGTTCACC 59.201 52.381 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 2.639286 CACAGCGCAAAGTGGACC 59.361 61.111 11.47 0.00 32.24 4.46
83 85 3.202906 CAAACGGAGAACAAGAGTTGGA 58.797 45.455 0.00 0.00 38.30 3.53
156 160 1.202794 GGGGAACGAGGTAACCAAACA 60.203 52.381 0.00 0.00 37.17 2.83
174 178 5.276631 CCAAACAAAACAAAATGACCTACGC 60.277 40.000 0.00 0.00 0.00 4.42
274 2427 0.394488 TCGAGGGAGTAGAGCACCAG 60.394 60.000 0.00 0.00 0.00 4.00
321 2474 1.966451 GTGTTGGGCTTCCGGAGTG 60.966 63.158 3.34 2.88 0.00 3.51
355 2508 1.896660 TCGGTCTTGGGCTTTGCAC 60.897 57.895 0.00 0.00 0.00 4.57
361 2514 1.076412 TTGGGCTTTGCACTGTCCA 60.076 52.632 7.31 7.31 36.01 4.02
369 2522 0.405198 TTGCACTGTCCATGGGTGAT 59.595 50.000 20.10 0.00 33.32 3.06
478 3006 4.357996 GACTAGGAGTATTGTTACGTGGC 58.642 47.826 0.00 0.00 33.32 5.01
516 3044 1.069227 GCTGCGTGATCCTTTTTCGTT 60.069 47.619 0.00 0.00 0.00 3.85
534 3063 0.537600 TTTGGAAAATGGACGCGGGA 60.538 50.000 12.47 0.00 0.00 5.14
615 3145 4.025040 TGAGGACTGCACTCAAATCAAT 57.975 40.909 3.17 0.00 41.66 2.57
683 3257 0.178958 ACCCACGCCCCAAACAAATA 60.179 50.000 0.00 0.00 0.00 1.40
700 3274 4.277423 ACAAATAACAACCAACCTTCCTCG 59.723 41.667 0.00 0.00 0.00 4.63
710 3307 0.319641 ACCTTCCTCGAGTCGTTTGC 60.320 55.000 13.12 0.00 0.00 3.68
884 3571 2.108250 ACATGAAAGGTGGTTGCTAGGT 59.892 45.455 0.00 0.00 0.00 3.08
1186 3898 2.140792 GCCTCCTCATCCGGCCTAA 61.141 63.158 0.00 0.00 37.86 2.69
1199 3911 2.618053 CGGCCTAATGTCTCTTTTCGT 58.382 47.619 0.00 0.00 0.00 3.85
1206 3918 6.812160 GCCTAATGTCTCTTTTCGTCTTTAGA 59.188 38.462 0.00 0.00 0.00 2.10
1212 3924 7.434492 TGTCTCTTTTCGTCTTTAGATTCTGT 58.566 34.615 0.00 0.00 0.00 3.41
1213 3925 8.573885 TGTCTCTTTTCGTCTTTAGATTCTGTA 58.426 33.333 0.00 0.00 0.00 2.74
1240 3956 0.694444 GATCCTCCAGCCCCTAACCA 60.694 60.000 0.00 0.00 0.00 3.67
1330 4051 3.640407 ATGGCTGTCGTGGTGGCT 61.640 61.111 0.00 0.00 0.00 4.75
1595 4327 7.849804 AATACCTGCCTATAATTAATCTGCG 57.150 36.000 0.00 0.00 0.00 5.18
1596 4328 5.228945 ACCTGCCTATAATTAATCTGCGT 57.771 39.130 0.00 0.00 0.00 5.24
1597 4329 5.621193 ACCTGCCTATAATTAATCTGCGTT 58.379 37.500 0.00 0.00 0.00 4.84
1598 4330 5.470098 ACCTGCCTATAATTAATCTGCGTTG 59.530 40.000 0.00 0.00 0.00 4.10
1600 4332 6.299023 TGCCTATAATTAATCTGCGTTGTG 57.701 37.500 0.00 0.00 0.00 3.33
1601 4333 5.147162 GCCTATAATTAATCTGCGTTGTGC 58.853 41.667 0.00 0.00 46.70 4.57
1682 4414 9.230122 TGTTGATTCTGCTTGAAAATCTATGTA 57.770 29.630 0.00 0.00 38.29 2.29
1939 4769 0.532573 AGAGTGTGGAGTACATGCCG 59.467 55.000 0.00 0.00 42.24 5.69
2303 5134 4.755629 TCCGTCACCATCGAAAAATAAACA 59.244 37.500 0.00 0.00 0.00 2.83
2423 5262 4.499183 AGTCTGAGATCGCCTTTAGTTTG 58.501 43.478 0.00 0.00 0.00 2.93
2665 5526 2.551504 GGGCAAGGTCCTCTTTCGTTTA 60.552 50.000 0.00 0.00 32.41 2.01
2666 5527 3.143728 GGCAAGGTCCTCTTTCGTTTAA 58.856 45.455 0.00 0.00 32.41 1.52
2760 5631 6.532826 TGACTTAACCTAATTACCGGTTTGT 58.467 36.000 15.04 11.97 43.02 2.83
2798 5859 3.876589 TTCCCGTGACGCTGCCTTC 62.877 63.158 0.00 0.00 0.00 3.46
3025 7418 4.264460 AGCTCCGCTCAAATTAGATAGG 57.736 45.455 0.00 0.00 30.62 2.57
3075 7468 0.469144 TCCAGCCCTTTCCCACAAAC 60.469 55.000 0.00 0.00 0.00 2.93
3116 7509 4.778534 AATCACATCCAACTTGAAGCAG 57.221 40.909 0.00 0.00 0.00 4.24
3161 7555 6.183360 GGCTAGCTAAACACATCAACTTTAGG 60.183 42.308 15.72 0.00 31.00 2.69
3241 7640 7.525688 TTGTATTTGAATGATCTCGAGTCAC 57.474 36.000 13.13 5.88 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.972505 CGGTCCACTTTGCGCTGT 60.973 61.111 9.73 1.72 0.00 4.40
156 160 4.261447 GGAGTGCGTAGGTCATTTTGTTTT 60.261 41.667 0.00 0.00 0.00 2.43
274 2427 2.617274 GGAGGCCGTGAAGTGTTGC 61.617 63.158 0.00 0.00 0.00 4.17
321 2474 2.346365 GACCCAGTCGTCCCAACC 59.654 66.667 0.00 0.00 0.00 3.77
355 2508 1.820906 CGGCATCACCCATGGACAG 60.821 63.158 15.22 2.16 32.37 3.51
361 2514 4.511246 CCAGCCGGCATCACCCAT 62.511 66.667 31.54 0.76 33.26 4.00
458 2982 4.097437 TCTGCCACGTAACAATACTCCTAG 59.903 45.833 0.00 0.00 0.00 3.02
516 3044 0.958382 CTCCCGCGTCCATTTTCCAA 60.958 55.000 4.92 0.00 0.00 3.53
524 3053 3.068691 CTTCCTCTCCCGCGTCCA 61.069 66.667 4.92 0.00 0.00 4.02
534 3063 3.741388 CGGCCGTATCAATTTCTTCCTCT 60.741 47.826 19.50 0.00 0.00 3.69
615 3145 3.906846 TGGTTAAGGGTAGGTTAAACGGA 59.093 43.478 0.00 0.00 30.86 4.69
683 3257 1.489230 ACTCGAGGAAGGTTGGTTGTT 59.511 47.619 18.41 0.00 0.00 2.83
700 3274 3.119096 GCCGGGAGCAAACGACTC 61.119 66.667 2.18 0.00 42.97 3.36
710 3307 3.506059 ATCGATTGCTCGCCGGGAG 62.506 63.158 13.79 13.79 44.65 4.30
722 3331 4.496360 CATGATGCTCAGCTAGATCGATT 58.504 43.478 0.00 0.00 0.00 3.34
864 3530 2.749621 GACCTAGCAACCACCTTTCATG 59.250 50.000 0.00 0.00 0.00 3.07
884 3571 3.616956 AAACGAGCCTCAGATTCATGA 57.383 42.857 0.00 0.00 0.00 3.07
1089 3785 1.419381 TGATGTAGGCGCCCTCAATA 58.581 50.000 26.15 12.63 34.61 1.90
1186 3898 8.091449 ACAGAATCTAAAGACGAAAAGAGACAT 58.909 33.333 0.00 0.00 0.00 3.06
1212 3924 3.511477 GGGCTGGAGGATCTTCTGTATA 58.489 50.000 4.68 0.00 33.73 1.47
1213 3925 2.334023 GGGCTGGAGGATCTTCTGTAT 58.666 52.381 4.68 0.00 33.73 2.29
1240 3956 0.245539 GAGCACATGCACATGGCTTT 59.754 50.000 20.29 6.74 41.78 3.51
1546 4276 4.530094 TCTTGAAAGCGCATAATTACCG 57.470 40.909 11.47 3.66 0.00 4.02
1595 4327 1.148310 AGCATCTACACGTGCACAAC 58.852 50.000 17.22 0.87 43.63 3.32
1596 4328 1.877637 AAGCATCTACACGTGCACAA 58.122 45.000 17.22 0.00 43.63 3.33
1597 4329 1.877637 AAAGCATCTACACGTGCACA 58.122 45.000 17.22 0.00 43.63 4.57
1598 4330 2.223144 TCAAAAGCATCTACACGTGCAC 59.777 45.455 17.22 6.82 43.63 4.57
1600 4332 2.223144 TGTCAAAAGCATCTACACGTGC 59.777 45.455 17.22 0.00 41.57 5.34
1601 4333 3.740832 TCTGTCAAAAGCATCTACACGTG 59.259 43.478 15.48 15.48 0.00 4.49
1603 4335 3.123621 GGTCTGTCAAAAGCATCTACACG 59.876 47.826 0.00 0.00 0.00 4.49
1604 4336 4.319177 AGGTCTGTCAAAAGCATCTACAC 58.681 43.478 0.00 0.00 0.00 2.90
1605 4337 4.623932 AGGTCTGTCAAAAGCATCTACA 57.376 40.909 0.00 0.00 0.00 2.74
1939 4769 0.033504 TCACCAGCGACAGGAAGAAC 59.966 55.000 0.00 0.00 0.00 3.01
2423 5262 1.798813 GACAGACGACAATGGTTCACC 59.201 52.381 0.00 0.00 0.00 4.02
2665 5526 4.684757 GCCCTTTGGGTGTTTTTGTACATT 60.685 41.667 0.00 0.00 46.51 2.71
2666 5527 3.181459 GCCCTTTGGGTGTTTTTGTACAT 60.181 43.478 0.00 0.00 46.51 2.29
2798 5859 1.812571 GTTGCCTGTCCATGTGGTAAG 59.187 52.381 0.00 0.00 36.34 2.34
2853 5918 0.462225 TCTCTAGCAGGGACGACTCG 60.462 60.000 0.00 0.00 0.00 4.18
3098 7491 1.610038 TGCTGCTTCAAGTTGGATGTG 59.390 47.619 2.34 0.00 0.00 3.21
3116 7509 0.680921 TGGGCTGCTAGTTTGGATGC 60.681 55.000 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.