Multiple sequence alignment - TraesCS2D01G052000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G052000 chr2D 100.000 2459 0 0 1 2459 19651720 19654178 0.000000e+00 4542.0
1 TraesCS2D01G052000 chr2A 91.355 2140 134 17 1 2110 20555538 20553420 0.000000e+00 2880.0
2 TraesCS2D01G052000 chrUn 91.686 1684 88 10 1 1670 141678254 141676609 0.000000e+00 2287.0
3 TraesCS2D01G052000 chrUn 91.622 1683 90 9 1 1670 16703872 16702228 0.000000e+00 2279.0
4 TraesCS2D01G052000 chrUn 91.568 1684 90 10 1 1670 16714411 16712766 0.000000e+00 2276.0
5 TraesCS2D01G052000 chrUn 89.454 787 78 4 1156 1940 301128681 301127898 0.000000e+00 989.0
6 TraesCS2D01G052000 chrUn 89.327 787 79 4 1156 1940 301124048 301123265 0.000000e+00 983.0
7 TraesCS2D01G052000 chrUn 89.072 787 81 4 1156 1940 273040861 273040078 0.000000e+00 972.0
8 TraesCS2D01G052000 chrUn 88.065 796 90 4 1144 1937 227513930 227514722 0.000000e+00 939.0
9 TraesCS2D01G052000 chrUn 88.065 796 90 4 1144 1937 282694975 282695767 0.000000e+00 939.0
10 TraesCS2D01G052000 chrUn 82.048 713 94 17 1752 2459 16496704 16497387 5.900000e-161 577.0
11 TraesCS2D01G052000 chrUn 81.882 712 95 17 1752 2459 351929821 351930502 9.870000e-159 569.0
12 TraesCS2D01G052000 chrUn 89.488 371 38 1 2089 2459 16690512 16690143 3.700000e-128 468.0
13 TraesCS2D01G052000 chr3B 82.514 183 32 0 1907 2089 805373450 805373632 7.040000e-36 161.0
14 TraesCS2D01G052000 chr3B 80.328 183 35 1 1907 2089 651691090 651691271 1.190000e-28 137.0
15 TraesCS2D01G052000 chr7D 80.435 184 34 2 1907 2089 163055222 163055404 3.300000e-29 139.0
16 TraesCS2D01G052000 chr7D 100.000 28 0 0 459 486 403152392 403152419 4.000000e-03 52.8
17 TraesCS2D01G052000 chr1D 78.571 140 18 10 290 424 326786225 326786357 5.640000e-12 82.4
18 TraesCS2D01G052000 chr7A 86.957 69 9 0 357 425 260876467 260876399 7.290000e-11 78.7
19 TraesCS2D01G052000 chr1B 76.712 146 24 8 288 429 561326480 561326619 3.390000e-09 73.1
20 TraesCS2D01G052000 chr5D 81.111 90 16 1 340 428 498183270 498183181 1.220000e-08 71.3
21 TraesCS2D01G052000 chr4B 88.889 45 5 0 382 426 3247922 3247966 3.420000e-04 56.5
22 TraesCS2D01G052000 chr4D 100.000 28 0 0 400 427 318608931 318608904 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G052000 chr2D 19651720 19654178 2458 False 4542 4542 100.0000 1 2459 1 chr2D.!!$F1 2458
1 TraesCS2D01G052000 chr2A 20553420 20555538 2118 True 2880 2880 91.3550 1 2110 1 chr2A.!!$R1 2109
2 TraesCS2D01G052000 chrUn 141676609 141678254 1645 True 2287 2287 91.6860 1 1670 1 chrUn.!!$R4 1669
3 TraesCS2D01G052000 chrUn 16702228 16703872 1644 True 2279 2279 91.6220 1 1670 1 chrUn.!!$R2 1669
4 TraesCS2D01G052000 chrUn 16712766 16714411 1645 True 2276 2276 91.5680 1 1670 1 chrUn.!!$R3 1669
5 TraesCS2D01G052000 chrUn 301123265 301128681 5416 True 986 989 89.3905 1156 1940 2 chrUn.!!$R6 784
6 TraesCS2D01G052000 chrUn 273040078 273040861 783 True 972 972 89.0720 1156 1940 1 chrUn.!!$R5 784
7 TraesCS2D01G052000 chrUn 227513930 227514722 792 False 939 939 88.0650 1144 1937 1 chrUn.!!$F2 793
8 TraesCS2D01G052000 chrUn 282694975 282695767 792 False 939 939 88.0650 1144 1937 1 chrUn.!!$F3 793
9 TraesCS2D01G052000 chrUn 16496704 16497387 683 False 577 577 82.0480 1752 2459 1 chrUn.!!$F1 707
10 TraesCS2D01G052000 chrUn 351929821 351930502 681 False 569 569 81.8820 1752 2459 1 chrUn.!!$F4 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 1009 0.673644 AGGAACAGGTTCATTCGGCG 60.674 55.0 13.62 0.0 41.2 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2306 6982 0.042581 TGGGGTCTCAGGCATGTCTA 59.957 55.0 0.0 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 159 3.145286 GCAGAGAAGAAAAGAAGGCAGT 58.855 45.455 0.00 0.00 0.00 4.40
280 281 9.474313 TTTATTGGCATTCCTGATAGTTAGTTT 57.526 29.630 0.00 0.00 0.00 2.66
306 307 0.868406 GCCGTTGTCTTGTCTTCCTG 59.132 55.000 0.00 0.00 0.00 3.86
331 333 4.154195 GCAGGATACAAACACGAAACAGAT 59.846 41.667 0.00 0.00 41.41 2.90
387 392 1.831736 CGACAAAGGGTAGGATCCACT 59.168 52.381 15.82 3.40 0.00 4.00
643 658 4.034163 ACACATCAGACGTACTACTCATCG 59.966 45.833 0.00 0.00 0.00 3.84
652 667 3.003068 CGTACTACTCATCGTCCCGAATT 59.997 47.826 0.00 0.00 39.99 2.17
656 671 1.278127 ACTCATCGTCCCGAATTTGGT 59.722 47.619 10.97 0.00 39.99 3.67
660 675 2.696759 CGTCCCGAATTTGGTGCCC 61.697 63.158 10.97 0.00 0.00 5.36
712 727 6.710295 TCGGTCATGGAATTGTCCTATTATTG 59.290 38.462 0.00 0.00 45.22 1.90
724 739 6.475504 TGTCCTATTATTGTCATAGCCCATG 58.524 40.000 0.00 0.00 35.81 3.66
965 991 3.698289 CCGGATAGCTATAGGAGGAACA 58.302 50.000 18.25 0.00 0.00 3.18
978 1009 0.673644 AGGAACAGGTTCATTCGGCG 60.674 55.000 13.62 0.00 41.20 6.46
1154 1185 3.047877 CAAGGGGGCGACGTCAAC 61.048 66.667 17.16 6.70 0.00 3.18
1313 5977 0.514691 CACTTTTGCTGGCTCGAGTC 59.485 55.000 10.89 10.89 0.00 3.36
1314 5978 0.603975 ACTTTTGCTGGCTCGAGTCC 60.604 55.000 15.72 16.01 0.00 3.85
1466 6130 4.186159 CAGCACATGATATGACAGACACA 58.814 43.478 0.00 0.00 0.00 3.72
1495 6161 5.185454 TGTCGGTCGGTATATATATCGGTT 58.815 41.667 22.04 0.00 37.47 4.44
1683 6352 6.810676 CCATGTACTATCACAGTGAGATATGC 59.189 42.308 9.64 0.58 38.24 3.14
1724 6397 7.047271 GCATCCATCTTTAGTTCTCTCTTTCT 58.953 38.462 0.00 0.00 0.00 2.52
1805 6478 5.063880 CGTATTTAAGAGGGAATTGGGGAG 58.936 45.833 0.00 0.00 0.00 4.30
1834 6510 4.894114 ACGAGAACATATACTGGCCTAGTT 59.106 41.667 3.32 0.00 40.89 2.24
1852 6528 5.128827 CCTAGTTGGAGCCTAATTGTAGTCA 59.871 44.000 0.00 0.00 38.35 3.41
1912 6588 6.521151 AGTCAAGAATAAGAAATTGGCAGG 57.479 37.500 0.00 0.00 29.74 4.85
1927 6603 2.119832 AGGGTACTCTGGTGCGGT 59.880 61.111 0.00 0.00 0.00 5.68
1940 6616 5.064558 TCTGGTGCGGTTAAAGAAATTGTA 58.935 37.500 0.00 0.00 0.00 2.41
1945 6621 5.001232 TGCGGTTAAAGAAATTGTAGCTCT 58.999 37.500 0.00 0.00 0.00 4.09
2015 6691 1.524621 GACCATGATGGAGTGGGCG 60.525 63.158 20.11 0.00 40.96 6.13
2057 6733 0.824182 AAGCCGTCGATCCTAGAGGG 60.824 60.000 0.00 4.10 44.09 4.30
2068 6744 2.510330 TCCTAGAGGGGATGAGTACCA 58.490 52.381 0.00 0.00 35.41 3.25
2096 6772 0.393537 GTGCCTTGGATCCTGGACTG 60.394 60.000 22.88 4.69 0.00 3.51
2125 6801 5.007385 TGTCGTCTTTCTTTAGCCTATCC 57.993 43.478 0.00 0.00 0.00 2.59
2128 6804 6.107343 GTCGTCTTTCTTTAGCCTATCCTTT 58.893 40.000 0.00 0.00 0.00 3.11
2130 6806 5.220681 CGTCTTTCTTTAGCCTATCCTTTGC 60.221 44.000 0.00 0.00 0.00 3.68
2131 6807 5.066634 GTCTTTCTTTAGCCTATCCTTTGCC 59.933 44.000 0.00 0.00 0.00 4.52
2134 6810 2.910688 TTAGCCTATCCTTTGCCGAG 57.089 50.000 0.00 0.00 0.00 4.63
2136 6812 0.755686 AGCCTATCCTTTGCCGAGAG 59.244 55.000 0.00 0.00 0.00 3.20
2137 6813 0.882484 GCCTATCCTTTGCCGAGAGC 60.882 60.000 0.00 0.00 44.14 4.09
2159 6835 5.720261 CATCATCTGCATCGAGGATATTG 57.280 43.478 0.00 0.00 33.16 1.90
2163 6839 2.074576 CTGCATCGAGGATATTGGCAG 58.925 52.381 0.00 0.00 40.88 4.85
2165 6841 2.289257 TGCATCGAGGATATTGGCAGAG 60.289 50.000 0.00 0.00 0.00 3.35
2202 6878 3.713764 AGATAGAACCCCTTCATCAGTGG 59.286 47.826 0.00 0.00 0.00 4.00
2245 6921 2.580322 TGGGTTCCATAGCAAGGATGAA 59.420 45.455 0.00 0.00 34.56 2.57
2248 6924 4.016444 GGTTCCATAGCAAGGATGAACAA 58.984 43.478 0.00 0.00 34.56 2.83
2260 6936 3.196007 GATGAACAACATCGGCGAAAA 57.804 42.857 15.93 0.00 44.46 2.29
2265 6941 0.732538 CAACATCGGCGAAAAAGGGC 60.733 55.000 15.93 0.00 0.00 5.19
2287 6963 4.087892 CTGCCTGAGACCCCCGTG 62.088 72.222 0.00 0.00 0.00 4.94
2297 6973 4.261701 CCCCCGTGGTGTTGAAAA 57.738 55.556 0.00 0.00 0.00 2.29
2328 7004 1.210204 ACATGCCTGAGACCCCATGT 61.210 55.000 0.00 0.00 42.32 3.21
2329 7005 0.750546 CATGCCTGAGACCCCATGTG 60.751 60.000 0.00 0.00 32.51 3.21
2335 7011 3.976701 GAGACCCCATGTGGCGGTG 62.977 68.421 14.43 0.00 38.38 4.94
2363 7039 3.217626 CTCAAGGTCTCAACAGGCTTTT 58.782 45.455 0.00 0.00 0.00 2.27
2369 7045 2.354821 GTCTCAACAGGCTTTTGACGTT 59.645 45.455 11.87 0.00 0.00 3.99
2372 7048 0.248458 AACAGGCTTTTGACGTTGCG 60.248 50.000 0.00 0.00 0.00 4.85
2387 7063 1.771073 TTGCGTTGTCTCACAAGCCG 61.771 55.000 7.76 3.03 39.00 5.52
2391 7067 1.423395 GTTGTCTCACAAGCCGAGAG 58.577 55.000 0.00 0.00 39.00 3.20
2419 7095 3.184541 GCACCATCTTTGCTGCATTAAG 58.815 45.455 1.84 5.38 37.00 1.85
2433 7109 2.878406 GCATTAAGAAGCGCCCATCTTA 59.122 45.455 18.53 18.53 37.16 2.10
2444 7120 3.383505 GCGCCCATCTTATTTTTAACCCT 59.616 43.478 0.00 0.00 0.00 4.34
2445 7121 4.499188 GCGCCCATCTTATTTTTAACCCTC 60.499 45.833 0.00 0.00 0.00 4.30
2446 7122 4.642885 CGCCCATCTTATTTTTAACCCTCA 59.357 41.667 0.00 0.00 0.00 3.86
2449 7125 6.551227 GCCCATCTTATTTTTAACCCTCATCT 59.449 38.462 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.745232 TGCCCGACCAACATATGAAC 58.255 50.000 10.38 0.00 0.00 3.18
158 159 1.272490 CCTTCACGTGTTGGAGCTCTA 59.728 52.381 16.51 4.15 27.46 2.43
280 281 4.002906 AGACAAGACAACGGCATCTAAA 57.997 40.909 0.00 0.00 0.00 1.85
306 307 3.496884 TGTTTCGTGTTTGTATCCTGCTC 59.503 43.478 0.00 0.00 0.00 4.26
387 392 1.077140 TTAGGGCCATTGATGCGCA 60.077 52.632 14.96 14.96 43.45 6.09
413 418 2.121538 CGGGATCTGCCTCGTCTCA 61.122 63.158 0.00 0.00 36.66 3.27
656 671 1.303898 TATGGTGAATTGGAGGGGCA 58.696 50.000 0.00 0.00 0.00 5.36
660 675 7.408756 TCATTTTCTTATGGTGAATTGGAGG 57.591 36.000 0.00 0.00 0.00 4.30
890 912 2.764128 CTAGCGGGAGGGCCAAGA 60.764 66.667 6.18 0.00 35.15 3.02
965 991 2.746277 GGCACGCCGAATGAACCT 60.746 61.111 0.00 0.00 0.00 3.50
1006 1037 4.828296 GGGCTCCATGGTGGCTGG 62.828 72.222 31.72 10.57 37.47 4.85
1069 1100 1.450134 CCAGCAAGCAGACGCCATA 60.450 57.895 0.00 0.00 39.83 2.74
1314 5978 4.478371 TCCTGGCAGATGGCGCAG 62.478 66.667 17.94 0.00 46.16 5.18
1466 6130 8.074370 CGATATATATACCGACCGACAATGAAT 58.926 37.037 0.00 0.00 0.00 2.57
1621 6289 5.416952 AGCATGAAAACCTGAAACCTCATAG 59.583 40.000 0.00 0.00 0.00 2.23
1683 6352 3.317711 TGGATGCCACACAAAAGTTACAG 59.682 43.478 0.00 0.00 0.00 2.74
1724 6397 0.325296 ACAAGTGATAGCCGGGGAGA 60.325 55.000 2.18 0.00 0.00 3.71
1805 6478 3.304525 CCAGTATATGTTCTCGTCCCGAC 60.305 52.174 0.00 0.00 0.00 4.79
1826 6502 2.092375 ACAATTAGGCTCCAACTAGGCC 60.092 50.000 0.00 0.00 42.82 5.19
1834 6510 6.464322 CCATATGTGACTACAATTAGGCTCCA 60.464 42.308 1.24 0.00 40.84 3.86
1898 6574 4.324254 CCAGAGTACCCTGCCAATTTCTTA 60.324 45.833 0.00 0.00 32.97 2.10
1912 6588 2.028748 TCTTTAACCGCACCAGAGTACC 60.029 50.000 0.00 0.00 0.00 3.34
1927 6603 7.375834 TCTCACGAGAGCTACAATTTCTTTAA 58.624 34.615 4.83 0.00 41.81 1.52
1940 6616 7.870174 TGGATACTACGTTCTCACGAGAGCT 62.870 48.000 4.83 0.00 43.89 4.09
1945 6621 2.349580 CGTGGATACTACGTTCTCACGA 59.650 50.000 16.90 0.00 46.03 4.35
2015 6691 0.610687 AGAGTACACTGGCCTCAAGC 59.389 55.000 3.32 0.00 42.60 4.01
2057 6733 3.760580 CCATCCTTCTGGTACTCATCC 57.239 52.381 0.00 0.00 34.23 3.51
2068 6744 1.213926 GATCCAAGGCACCATCCTTCT 59.786 52.381 0.00 0.00 44.24 2.85
2096 6772 4.083961 GCTAAAGAAAGACGACAAACCTCC 60.084 45.833 0.00 0.00 0.00 4.30
2137 6813 4.571176 CCAATATCCTCGATGCAGATGATG 59.429 45.833 0.00 0.00 30.23 3.07
2143 6819 2.074576 CTGCCAATATCCTCGATGCAG 58.925 52.381 0.00 0.00 38.78 4.41
2149 6825 1.287730 GCGCTCTGCCAATATCCTCG 61.288 60.000 0.00 0.00 37.76 4.63
2150 6826 2.537863 GCGCTCTGCCAATATCCTC 58.462 57.895 0.00 0.00 37.76 3.71
2163 6839 7.727746 TTCTATCTCAGATTGAGCAGCGCTC 62.728 48.000 7.13 19.33 43.95 5.03
2165 6841 2.060284 CTATCTCAGATTGAGCAGCGC 58.940 52.381 0.00 0.00 43.95 5.92
2172 6848 5.280499 TGAAGGGGTTCTATCTCAGATTGA 58.720 41.667 0.00 0.00 31.77 2.57
2218 6894 0.625316 TGCTATGGAACCCATGCAGT 59.375 50.000 8.64 0.00 44.84 4.40
2219 6895 1.679680 CTTGCTATGGAACCCATGCAG 59.320 52.381 16.47 7.09 44.84 4.41
2221 6897 1.035139 CCTTGCTATGGAACCCATGC 58.965 55.000 8.64 10.07 44.84 4.06
2224 6900 2.204463 TCATCCTTGCTATGGAACCCA 58.796 47.619 0.00 0.00 37.13 4.51
2245 6921 0.596082 CCCTTTTTCGCCGATGTTGT 59.404 50.000 0.00 0.00 0.00 3.32
2248 6924 2.340328 GGCCCTTTTTCGCCGATGT 61.340 57.895 0.00 0.00 34.94 3.06
2280 6956 1.737201 GTTTTCAACACCACGGGGG 59.263 57.895 9.50 0.00 44.81 5.40
2281 6957 1.357334 CGTTTTCAACACCACGGGG 59.643 57.895 0.00 0.00 41.29 5.73
2282 6958 0.452585 AACGTTTTCAACACCACGGG 59.547 50.000 0.00 0.00 36.95 5.28
2283 6959 2.265647 AAACGTTTTCAACACCACGG 57.734 45.000 7.96 0.00 36.95 4.94
2284 6960 3.100089 GGTAAACGTTTTCAACACCACG 58.900 45.455 20.19 0.00 38.62 4.94
2285 6961 4.359971 AGGTAAACGTTTTCAACACCAC 57.640 40.909 24.58 13.20 0.00 4.16
2286 6962 5.294060 GTCTAGGTAAACGTTTTCAACACCA 59.706 40.000 24.58 13.64 0.00 4.17
2287 6963 5.294060 TGTCTAGGTAAACGTTTTCAACACC 59.706 40.000 20.19 19.01 0.00 4.16
2288 6964 6.348621 TGTCTAGGTAAACGTTTTCAACAC 57.651 37.500 20.19 10.50 0.00 3.32
2289 6965 6.512091 GCATGTCTAGGTAAACGTTTTCAACA 60.512 38.462 20.19 15.44 0.00 3.33
2290 6966 5.849604 GCATGTCTAGGTAAACGTTTTCAAC 59.150 40.000 20.19 11.27 0.00 3.18
2291 6967 5.049267 GGCATGTCTAGGTAAACGTTTTCAA 60.049 40.000 20.19 5.40 0.00 2.69
2292 6968 4.453136 GGCATGTCTAGGTAAACGTTTTCA 59.547 41.667 20.19 0.00 0.00 2.69
2293 6969 4.694037 AGGCATGTCTAGGTAAACGTTTTC 59.306 41.667 20.19 14.12 0.00 2.29
2294 6970 4.454504 CAGGCATGTCTAGGTAAACGTTTT 59.545 41.667 20.19 3.70 0.00 2.43
2295 6971 4.000988 CAGGCATGTCTAGGTAAACGTTT 58.999 43.478 18.90 18.90 0.00 3.60
2296 6972 3.259876 TCAGGCATGTCTAGGTAAACGTT 59.740 43.478 0.00 0.00 0.00 3.99
2297 6973 2.829720 TCAGGCATGTCTAGGTAAACGT 59.170 45.455 0.00 0.00 0.00 3.99
2298 6974 3.130516 TCTCAGGCATGTCTAGGTAAACG 59.869 47.826 0.00 0.00 0.00 3.60
2299 6975 4.434520 GTCTCAGGCATGTCTAGGTAAAC 58.565 47.826 0.00 0.00 0.00 2.01
2300 6976 3.451178 GGTCTCAGGCATGTCTAGGTAAA 59.549 47.826 0.00 0.00 0.00 2.01
2301 6977 3.031736 GGTCTCAGGCATGTCTAGGTAA 58.968 50.000 0.00 0.00 0.00 2.85
2302 6978 2.667470 GGTCTCAGGCATGTCTAGGTA 58.333 52.381 0.00 0.00 0.00 3.08
2303 6979 1.490574 GGTCTCAGGCATGTCTAGGT 58.509 55.000 0.00 0.00 0.00 3.08
2304 6980 0.755686 GGGTCTCAGGCATGTCTAGG 59.244 60.000 0.00 0.00 0.00 3.02
2305 6981 0.755686 GGGGTCTCAGGCATGTCTAG 59.244 60.000 0.00 0.00 0.00 2.43
2306 6982 0.042581 TGGGGTCTCAGGCATGTCTA 59.957 55.000 0.00 0.00 0.00 2.59
2309 6985 1.210204 ACATGGGGTCTCAGGCATGT 61.210 55.000 0.00 0.00 0.00 3.21
2312 6988 2.605607 CCACATGGGGTCTCAGGCA 61.606 63.158 5.57 0.00 0.00 4.75
2328 7004 0.673333 CTTGAGTATGCACACCGCCA 60.673 55.000 0.00 0.00 41.33 5.69
2329 7005 1.369091 CCTTGAGTATGCACACCGCC 61.369 60.000 0.00 0.00 41.33 6.13
2335 7011 3.664107 TGTTGAGACCTTGAGTATGCAC 58.336 45.455 0.00 0.00 0.00 4.57
2347 7023 1.264288 CGTCAAAAGCCTGTTGAGACC 59.736 52.381 0.00 0.00 35.71 3.85
2363 7039 0.458716 TGTGAGACAACGCAACGTCA 60.459 50.000 0.00 0.00 39.99 4.35
2369 7045 2.243957 CGGCTTGTGAGACAACGCA 61.244 57.895 0.00 0.00 35.46 5.24
2372 7048 1.423395 CTCTCGGCTTGTGAGACAAC 58.577 55.000 3.48 0.00 39.97 3.32
2387 7063 3.863142 AAGATGGTGCAAAATGCTCTC 57.137 42.857 3.78 0.00 45.31 3.20
2391 7067 2.158841 CAGCAAAGATGGTGCAAAATGC 59.841 45.455 0.00 0.00 46.84 3.56
2400 7076 4.381292 GCTTCTTAATGCAGCAAAGATGGT 60.381 41.667 17.94 0.00 35.04 3.55
2401 7077 4.110482 GCTTCTTAATGCAGCAAAGATGG 58.890 43.478 17.94 12.09 35.04 3.51
2406 7082 1.402720 GGCGCTTCTTAATGCAGCAAA 60.403 47.619 7.64 0.00 34.60 3.68
2419 7095 5.041287 GGTTAAAAATAAGATGGGCGCTTC 58.959 41.667 7.64 8.44 0.00 3.86
2423 7099 4.642885 TGAGGGTTAAAAATAAGATGGGCG 59.357 41.667 0.00 0.00 0.00 6.13
2433 7109 8.477419 TGTTGAAAGAGATGAGGGTTAAAAAT 57.523 30.769 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.