Multiple sequence alignment - TraesCS2D01G051100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G051100 chr2D 100.000 2717 0 0 1 2717 19246180 19243464 0.000000e+00 5018.0
1 TraesCS2D01G051100 chr2D 90.009 1141 105 5 657 1795 19544595 19543462 0.000000e+00 1467.0
2 TraesCS2D01G051100 chr2D 89.322 1077 107 4 665 1735 10310462 10311536 0.000000e+00 1345.0
3 TraesCS2D01G051100 chr2D 90.860 372 26 4 1 366 19545005 19544636 2.430000e-135 492.0
4 TraesCS2D01G051100 chr2D 92.400 250 19 0 397 646 630180075 630179826 9.250000e-95 357.0
5 TraesCS2D01G051100 chr2D 84.586 266 37 2 110 375 10310167 10310428 7.460000e-66 261.0
6 TraesCS2D01G051100 chr2D 80.592 304 50 7 2090 2389 546804167 546803869 2.720000e-55 226.0
7 TraesCS2D01G051100 chr2D 80.851 235 27 12 2404 2622 19541530 19541298 4.650000e-38 169.0
8 TraesCS2D01G051100 chr2D 82.237 152 24 2 1919 2067 41468438 41468589 7.900000e-26 128.0
9 TraesCS2D01G051100 chrUn 90.193 1142 106 3 660 1795 169571076 169572217 0.000000e+00 1483.0
10 TraesCS2D01G051100 chrUn 83.220 1025 159 5 706 1717 150939696 150940720 0.000000e+00 928.0
11 TraesCS2D01G051100 chrUn 88.385 353 36 4 43 394 169570705 169571053 1.160000e-113 420.0
12 TraesCS2D01G051100 chrUn 88.385 353 36 4 43 394 391746469 391746817 1.160000e-113 420.0
13 TraesCS2D01G051100 chrUn 85.714 147 20 1 2401 2547 169525740 169525885 1.300000e-33 154.0
14 TraesCS2D01G051100 chrUn 85.714 147 20 1 2401 2547 169572869 169573014 1.300000e-33 154.0
15 TraesCS2D01G051100 chrUn 85.714 147 20 1 2401 2547 169576334 169576479 1.300000e-33 154.0
16 TraesCS2D01G051100 chrUn 85.714 147 20 1 2401 2547 358727221 358727366 1.300000e-33 154.0
17 TraesCS2D01G051100 chr1B 90.193 1142 106 3 660 1795 44789844 44788703 0.000000e+00 1483.0
18 TraesCS2D01G051100 chr1B 88.385 353 36 4 43 394 44790215 44789867 1.160000e-113 420.0
19 TraesCS2D01G051100 chr1B 86.525 141 18 1 2407 2547 44741659 44741520 1.300000e-33 154.0
20 TraesCS2D01G051100 chr1B 85.816 141 19 1 2407 2547 44727241 44727102 6.060000e-32 148.0
21 TraesCS2D01G051100 chr1B 85.816 141 19 1 2407 2547 44788042 44787903 6.060000e-32 148.0
22 TraesCS2D01G051100 chr3D 89.921 1141 106 5 657 1795 589696373 589697506 0.000000e+00 1461.0
23 TraesCS2D01G051100 chr3D 90.860 372 26 4 1 366 589695963 589696332 2.430000e-135 492.0
24 TraesCS2D01G051100 chr3D 86.395 147 19 1 2401 2547 589699446 589699591 2.800000e-35 159.0
25 TraesCS2D01G051100 chr2A 89.033 1076 113 3 665 1735 10465316 10466391 0.000000e+00 1328.0
26 TraesCS2D01G051100 chr2A 92.339 248 18 1 399 646 528376208 528375962 4.300000e-93 351.0
27 TraesCS2D01G051100 chr2A 78.859 298 55 6 2096 2389 689782099 689782392 7.680000e-46 195.0
28 TraesCS2D01G051100 chr2A 86.755 151 16 4 1919 2067 510976253 510976401 6.020000e-37 165.0
29 TraesCS2D01G051100 chr2B 87.848 1078 126 4 662 1735 38841782 38842858 0.000000e+00 1260.0
30 TraesCS2D01G051100 chr2B 86.774 1119 140 7 662 1774 4482322 4483438 0.000000e+00 1240.0
31 TraesCS2D01G051100 chr2B 85.862 290 36 4 95 383 38841482 38841767 1.220000e-78 303.0
32 TraesCS2D01G051100 chr2B 85.333 150 19 3 1919 2067 448487020 448487167 4.690000e-33 152.0
33 TraesCS2D01G051100 chr6D 92.800 250 17 1 398 647 203349389 203349141 7.150000e-96 361.0
34 TraesCS2D01G051100 chr4A 92.742 248 17 1 399 646 480001356 480001602 9.250000e-95 357.0
35 TraesCS2D01G051100 chr4A 92.339 248 18 1 399 646 165816284 165816530 4.300000e-93 351.0
36 TraesCS2D01G051100 chr4A 85.567 97 14 0 2089 2185 317085537 317085441 4.790000e-18 102.0
37 TraesCS2D01G051100 chr1A 92.742 248 17 1 399 646 333917874 333918120 9.250000e-95 357.0
38 TraesCS2D01G051100 chr7B 92.369 249 17 2 398 646 607615300 607615546 1.200000e-93 353.0
39 TraesCS2D01G051100 chr7B 83.871 186 21 6 1919 2095 1560601 1560416 4.650000e-38 169.0
40 TraesCS2D01G051100 chr7B 85.000 100 15 0 2090 2189 379752174 379752075 4.790000e-18 102.0
41 TraesCS2D01G051100 chr7A 92.339 248 17 2 399 646 314404554 314404309 4.300000e-93 351.0
42 TraesCS2D01G051100 chr7A 94.340 53 0 3 1879 1930 555484240 555484290 8.070000e-11 78.7
43 TraesCS2D01G051100 chr7A 90.196 51 4 1 1875 1925 393345945 393345994 6.280000e-07 65.8
44 TraesCS2D01G051100 chr3A 92.339 248 18 1 399 646 388358547 388358301 4.300000e-93 351.0
45 TraesCS2D01G051100 chr3A 82.075 106 19 0 2089 2194 226344892 226344787 1.040000e-14 91.6
46 TraesCS2D01G051100 chr6B 89.404 151 14 2 1919 2067 465696372 465696522 3.570000e-44 189.0
47 TraesCS2D01G051100 chr5D 88.000 150 17 1 1919 2067 59247458 59247309 2.780000e-40 176.0
48 TraesCS2D01G051100 chr5B 88.000 150 17 1 1919 2067 72007063 72007212 2.780000e-40 176.0
49 TraesCS2D01G051100 chr4D 79.654 231 32 9 2090 2310 468407023 468407248 4.690000e-33 152.0
50 TraesCS2D01G051100 chr4D 88.889 99 9 1 2196 2292 442208744 442208842 1.320000e-23 121.0
51 TraesCS2D01G051100 chr4B 85.811 148 14 6 1919 2065 429084976 429084835 1.690000e-32 150.0
52 TraesCS2D01G051100 chr7D 83.453 139 21 2 1919 2056 424655337 424655474 7.900000e-26 128.0
53 TraesCS2D01G051100 chr7D 85.577 104 15 0 2091 2194 12632909 12633012 2.860000e-20 110.0
54 TraesCS2D01G051100 chr7D 85.577 104 14 1 2091 2194 12637985 12638087 1.030000e-19 108.0
55 TraesCS2D01G051100 chr7D 84.615 104 16 0 2091 2194 12604109 12604212 1.330000e-18 104.0
56 TraesCS2D01G051100 chr7D 84.466 103 16 0 2091 2193 12627839 12627941 4.790000e-18 102.0
57 TraesCS2D01G051100 chr5A 96.296 54 1 1 1873 1925 681004694 681004641 1.340000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G051100 chr2D 19243464 19246180 2716 True 5018.000000 5018 100.000000 1 2717 1 chr2D.!!$R1 2716
1 TraesCS2D01G051100 chr2D 10310167 10311536 1369 False 803.000000 1345 86.954000 110 1735 2 chr2D.!!$F2 1625
2 TraesCS2D01G051100 chr2D 19541298 19545005 3707 True 709.333333 1467 87.240000 1 2622 3 chr2D.!!$R4 2621
3 TraesCS2D01G051100 chrUn 150939696 150940720 1024 False 928.000000 928 83.220000 706 1717 1 chrUn.!!$F1 1011
4 TraesCS2D01G051100 chrUn 169570705 169576479 5774 False 552.750000 1483 87.501500 43 2547 4 chrUn.!!$F5 2504
5 TraesCS2D01G051100 chr1B 44787903 44790215 2312 True 683.666667 1483 88.131333 43 2547 3 chr1B.!!$R3 2504
6 TraesCS2D01G051100 chr3D 589695963 589699591 3628 False 704.000000 1461 89.058667 1 2547 3 chr3D.!!$F1 2546
7 TraesCS2D01G051100 chr2A 10465316 10466391 1075 False 1328.000000 1328 89.033000 665 1735 1 chr2A.!!$F1 1070
8 TraesCS2D01G051100 chr2B 4482322 4483438 1116 False 1240.000000 1240 86.774000 662 1774 1 chr2B.!!$F1 1112
9 TraesCS2D01G051100 chr2B 38841482 38842858 1376 False 781.500000 1260 86.855000 95 1735 2 chr2B.!!$F3 1640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
788 809 0.329261 CCCTGAATTCCTCTGCCACA 59.671 55.0 2.27 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2281 3343 0.030773 TCTGATACATCCGCACGCTC 59.969 55.0 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.170738 GCTCCGTTGCTTGCATACA 58.829 52.632 0.00 0.00 0.00 2.29
23 24 2.419673 TCCGTTGCTTGCATACATTCTG 59.580 45.455 0.00 0.00 0.00 3.02
28 29 5.387649 CGTTGCTTGCATACATTCTGTTTTG 60.388 40.000 0.00 0.00 0.00 2.44
58 59 8.319143 TCAAATGAGCCTAGTTAACTTGTAAC 57.681 34.615 14.49 3.91 0.00 2.50
60 61 7.907214 AATGAGCCTAGTTAACTTGTAACTG 57.093 36.000 14.49 0.00 38.16 3.16
120 125 8.330466 AGCTCATACTGTCATACATACTCTAC 57.670 38.462 0.00 0.00 0.00 2.59
150 155 9.681062 CTCCCAAACAATTCTATTTCTAGGTTA 57.319 33.333 0.00 0.00 0.00 2.85
174 179 2.571757 CATGGGCAGCAGCAACAG 59.428 61.111 2.65 0.00 44.61 3.16
312 317 3.228453 ACTACTTCCGAGTCACCAAGAA 58.772 45.455 0.00 0.00 37.33 2.52
361 366 4.899352 ACTCAAGACCTTCTGTAAGCAT 57.101 40.909 0.00 0.00 0.00 3.79
366 371 6.173339 TCAAGACCTTCTGTAAGCATAAAGG 58.827 40.000 0.00 0.00 40.46 3.11
412 420 9.134055 AGTACTAGTACATACTTCCTTCATTCC 57.866 37.037 29.87 1.72 38.48 3.01
413 421 7.973048 ACTAGTACATACTTCCTTCATTCCA 57.027 36.000 0.00 0.00 37.73 3.53
424 432 8.854614 ACTTCCTTCATTCCATAATATAGTGC 57.145 34.615 0.00 0.00 0.00 4.40
425 433 7.885399 ACTTCCTTCATTCCATAATATAGTGCC 59.115 37.037 0.00 0.00 0.00 5.01
426 434 7.574021 TCCTTCATTCCATAATATAGTGCCT 57.426 36.000 0.00 0.00 0.00 4.75
427 435 8.679344 TCCTTCATTCCATAATATAGTGCCTA 57.321 34.615 0.00 0.00 0.00 3.93
428 436 9.284131 TCCTTCATTCCATAATATAGTGCCTAT 57.716 33.333 1.18 1.18 0.00 2.57
460 468 7.903995 TTTGAGAAGTCAAACTTTGCAAATT 57.096 28.000 13.23 3.91 45.82 1.82
461 469 7.903995 TTGAGAAGTCAAACTTTGCAAATTT 57.096 28.000 13.23 10.80 38.80 1.82
462 470 7.903995 TGAGAAGTCAAACTTTGCAAATTTT 57.096 28.000 18.63 18.63 38.80 1.82
463 471 7.741198 TGAGAAGTCAAACTTTGCAAATTTTG 58.259 30.769 32.84 32.84 38.80 2.44
464 472 7.601886 TGAGAAGTCAAACTTTGCAAATTTTGA 59.398 29.630 35.15 35.15 41.90 2.69
468 476 6.808008 TCAAACTTTGCAAATTTTGACCAA 57.192 29.167 35.15 22.69 40.39 3.67
469 477 6.840075 TCAAACTTTGCAAATTTTGACCAAG 58.160 32.000 35.15 20.12 40.39 3.61
470 478 5.816449 AACTTTGCAAATTTTGACCAAGG 57.184 34.783 13.23 10.59 0.00 3.61
471 479 4.842574 ACTTTGCAAATTTTGACCAAGGT 58.157 34.783 13.23 11.14 0.00 3.50
472 480 5.252547 ACTTTGCAAATTTTGACCAAGGTT 58.747 33.333 13.23 0.00 0.00 3.50
473 481 6.410540 ACTTTGCAAATTTTGACCAAGGTTA 58.589 32.000 13.23 0.00 0.00 2.85
474 482 7.053498 ACTTTGCAAATTTTGACCAAGGTTAT 58.947 30.769 13.23 0.00 0.00 1.89
475 483 8.207545 ACTTTGCAAATTTTGACCAAGGTTATA 58.792 29.630 13.23 0.00 0.00 0.98
476 484 8.600449 TTTGCAAATTTTGACCAAGGTTATAG 57.400 30.769 8.05 0.00 0.00 1.31
477 485 7.531857 TGCAAATTTTGACCAAGGTTATAGA 57.468 32.000 13.26 0.00 0.00 1.98
478 486 7.601856 TGCAAATTTTGACCAAGGTTATAGAG 58.398 34.615 13.26 0.00 0.00 2.43
479 487 7.450014 TGCAAATTTTGACCAAGGTTATAGAGA 59.550 33.333 13.26 0.00 0.00 3.10
480 488 8.303876 GCAAATTTTGACCAAGGTTATAGAGAA 58.696 33.333 13.26 0.00 0.00 2.87
558 566 9.358872 TGATGAATCTAGTGATATATGTTTCGC 57.641 33.333 0.00 0.00 31.70 4.70
559 567 9.358872 GATGAATCTAGTGATATATGTTTCGCA 57.641 33.333 0.00 0.00 31.70 5.10
560 568 8.520835 TGAATCTAGTGATATATGTTTCGCAC 57.479 34.615 0.00 0.00 31.70 5.34
561 569 8.360390 TGAATCTAGTGATATATGTTTCGCACT 58.640 33.333 0.00 0.00 39.61 4.40
562 570 8.749841 AATCTAGTGATATATGTTTCGCACTC 57.250 34.615 5.93 0.00 37.69 3.51
563 571 7.511959 TCTAGTGATATATGTTTCGCACTCT 57.488 36.000 5.93 0.00 37.69 3.24
564 572 8.617290 TCTAGTGATATATGTTTCGCACTCTA 57.383 34.615 5.93 0.00 37.69 2.43
565 573 8.722394 TCTAGTGATATATGTTTCGCACTCTAG 58.278 37.037 5.93 0.00 37.69 2.43
566 574 7.511959 AGTGATATATGTTTCGCACTCTAGA 57.488 36.000 0.00 0.00 31.54 2.43
567 575 8.116651 AGTGATATATGTTTCGCACTCTAGAT 57.883 34.615 0.00 0.00 31.54 1.98
568 576 8.026026 AGTGATATATGTTTCGCACTCTAGATG 58.974 37.037 0.00 0.00 31.54 2.90
569 577 7.810282 GTGATATATGTTTCGCACTCTAGATGT 59.190 37.037 0.00 0.00 0.00 3.06
570 578 9.010029 TGATATATGTTTCGCACTCTAGATGTA 57.990 33.333 0.00 0.00 0.00 2.29
571 579 9.841880 GATATATGTTTCGCACTCTAGATGTAA 57.158 33.333 0.00 0.00 0.00 2.41
576 584 8.942338 TGTTTCGCACTCTAGATGTAAATATT 57.058 30.769 0.00 0.00 0.00 1.28
577 585 9.378551 TGTTTCGCACTCTAGATGTAAATATTT 57.621 29.630 5.89 5.89 0.00 1.40
581 589 9.817809 TCGCACTCTAGATGTAAATATTTTTCT 57.182 29.630 5.91 9.08 0.00 2.52
609 617 3.606687 ACTTCGACAAAGTTTGTGAGGT 58.393 40.909 25.46 22.08 46.26 3.85
610 618 4.007659 ACTTCGACAAAGTTTGTGAGGTT 58.992 39.130 25.46 10.89 46.26 3.50
611 619 4.457949 ACTTCGACAAAGTTTGTGAGGTTT 59.542 37.500 25.46 6.75 46.26 3.27
612 620 4.349663 TCGACAAAGTTTGTGAGGTTTG 57.650 40.909 25.46 4.43 45.52 2.93
613 621 4.004314 TCGACAAAGTTTGTGAGGTTTGA 58.996 39.130 25.46 6.72 45.52 2.69
614 622 4.095610 CGACAAAGTTTGTGAGGTTTGAC 58.904 43.478 25.46 7.05 45.52 3.18
615 623 4.142687 CGACAAAGTTTGTGAGGTTTGACT 60.143 41.667 25.46 0.00 45.52 3.41
616 624 5.619086 CGACAAAGTTTGTGAGGTTTGACTT 60.619 40.000 25.46 0.00 45.52 3.01
617 625 6.096673 ACAAAGTTTGTGAGGTTTGACTTT 57.903 33.333 20.26 0.00 43.48 2.66
618 626 6.521162 ACAAAGTTTGTGAGGTTTGACTTTT 58.479 32.000 20.26 0.00 43.48 2.27
619 627 7.662897 ACAAAGTTTGTGAGGTTTGACTTTTA 58.337 30.769 20.26 0.00 43.48 1.52
620 628 8.145122 ACAAAGTTTGTGAGGTTTGACTTTTAA 58.855 29.630 20.26 0.00 43.48 1.52
621 629 8.983724 CAAAGTTTGTGAGGTTTGACTTTTAAA 58.016 29.630 7.48 0.00 35.75 1.52
622 630 9.549078 AAAGTTTGTGAGGTTTGACTTTTAAAA 57.451 25.926 0.00 0.00 34.67 1.52
623 631 9.549078 AAGTTTGTGAGGTTTGACTTTTAAAAA 57.451 25.926 1.66 0.00 0.00 1.94
655 663 7.857404 AGGCACTACATTATGAGGTATTAGT 57.143 36.000 0.00 0.00 36.02 2.24
687 704 4.199310 CCTAACGATGATGTGGTCCAAAT 58.801 43.478 0.00 0.00 0.00 2.32
696 717 4.574013 TGATGTGGTCCAAATTTGTTTTGC 59.426 37.500 16.73 5.16 42.85 3.68
719 740 2.431782 TGATGATCAGGCGAGATGACAA 59.568 45.455 0.09 0.00 0.00 3.18
726 747 0.949105 GGCGAGATGACAACAACGGT 60.949 55.000 0.00 0.00 0.00 4.83
729 750 1.721389 CGAGATGACAACAACGGTGAG 59.279 52.381 7.88 0.90 0.00 3.51
767 788 3.708220 GAGGAGCTTCTGGACGCCG 62.708 68.421 0.00 0.00 0.00 6.46
788 809 0.329261 CCCTGAATTCCTCTGCCACA 59.671 55.000 2.27 0.00 0.00 4.17
967 989 1.531840 GATCTCCGCCTGGCCTCTA 60.532 63.158 14.12 0.00 34.14 2.43
1147 1175 1.001248 CCCGAGGAGGACTACCCAA 59.999 63.158 0.00 0.00 45.00 4.12
1365 1393 2.202851 CCTCTAGCGGCACAGCAG 60.203 66.667 1.45 0.00 40.15 4.24
1371 1399 1.944234 TAGCGGCACAGCAGATCGAA 61.944 55.000 1.45 0.00 40.15 3.71
1414 1442 2.028130 CCGCTTGGAATCATGAGCC 58.972 57.895 0.09 5.99 33.02 4.70
1458 1489 0.033601 TCTTTGTTGTGCACCCTGGT 60.034 50.000 15.69 0.00 0.00 4.00
1486 1517 3.198853 TGGAATAATGGACCACATCGACA 59.801 43.478 0.00 0.00 39.40 4.35
1546 1577 1.270826 GTGCTGTGCTGAGAGAGTACA 59.729 52.381 0.00 0.00 44.23 2.90
1582 1613 3.886044 ACGTTGATCTTCGTGCTCA 57.114 47.368 13.08 0.00 38.85 4.26
1610 1641 4.162690 GCGGCGAATGGAGGAGGT 62.163 66.667 12.98 0.00 0.00 3.85
1614 1645 2.815308 CGAATGGAGGAGGTCGGG 59.185 66.667 0.00 0.00 0.00 5.14
1617 1651 0.981277 GAATGGAGGAGGTCGGGGAA 60.981 60.000 0.00 0.00 0.00 3.97
1620 1654 1.612739 GGAGGAGGTCGGGGAAACT 60.613 63.158 0.00 0.00 0.00 2.66
1712 1746 2.603915 GCAACCTGCGCAACAAAAT 58.396 47.368 13.05 0.00 31.71 1.82
1718 1752 1.189884 CCTGCGCAACAAAATTTGACG 59.810 47.619 13.05 13.13 32.61 4.35
1719 1753 1.189884 CTGCGCAACAAAATTTGACGG 59.810 47.619 13.05 2.58 31.17 4.79
1723 1757 1.784283 GCAACAAAATTTGACGGTCGG 59.216 47.619 13.19 0.00 0.00 4.79
1736 1773 3.980583 GGTCGGCCGATTCATAAGA 57.019 52.632 33.58 1.12 0.00 2.10
1749 1786 7.148672 GCCGATTCATAAGATACTTCTGTCATG 60.149 40.741 0.00 0.00 30.72 3.07
1751 1788 7.148672 CGATTCATAAGATACTTCTGTCATGCC 60.149 40.741 0.00 0.00 30.72 4.40
1752 1789 6.737720 TCATAAGATACTTCTGTCATGCCT 57.262 37.500 0.00 0.00 30.72 4.75
1753 1790 7.839680 TCATAAGATACTTCTGTCATGCCTA 57.160 36.000 0.00 0.00 30.72 3.93
1795 1836 7.840489 ACAAAATCAATTACAAGCGTTCAAAG 58.160 30.769 0.00 0.00 0.00 2.77
1796 1837 7.704472 ACAAAATCAATTACAAGCGTTCAAAGA 59.296 29.630 0.00 0.00 0.00 2.52
1798 1839 5.356882 TCAATTACAAGCGTTCAAAGAGG 57.643 39.130 0.00 0.00 0.00 3.69
1800 1841 5.705441 TCAATTACAAGCGTTCAAAGAGGAT 59.295 36.000 0.00 0.00 0.00 3.24
1801 1842 5.551760 ATTACAAGCGTTCAAAGAGGATG 57.448 39.130 0.00 0.00 0.00 3.51
1803 1844 3.070018 ACAAGCGTTCAAAGAGGATGAG 58.930 45.455 0.00 0.00 0.00 2.90
1804 1845 2.393271 AGCGTTCAAAGAGGATGAGG 57.607 50.000 0.00 0.00 0.00 3.86
1805 1846 1.065854 AGCGTTCAAAGAGGATGAGGG 60.066 52.381 0.00 0.00 0.00 4.30
1807 1848 2.350522 CGTTCAAAGAGGATGAGGGTG 58.649 52.381 0.00 0.00 0.00 4.61
1810 2749 1.630369 TCAAAGAGGATGAGGGTGTGG 59.370 52.381 0.00 0.00 0.00 4.17
1814 2753 3.645053 AGAGGATGAGGGTGTGGATAT 57.355 47.619 0.00 0.00 0.00 1.63
1817 2756 2.107204 AGGATGAGGGTGTGGATATTGC 59.893 50.000 0.00 0.00 0.00 3.56
1821 2760 3.052329 TGAGGGTGTGGATATTGCCATA 58.948 45.455 0.00 0.00 40.68 2.74
1825 2764 3.412386 GGTGTGGATATTGCCATAGGTC 58.588 50.000 0.00 0.00 40.68 3.85
1828 2767 4.516698 GTGTGGATATTGCCATAGGTCTTG 59.483 45.833 0.00 0.00 40.68 3.02
1831 2770 4.411869 TGGATATTGCCATAGGTCTTGACA 59.588 41.667 3.08 0.00 31.66 3.58
1833 2772 5.413833 GGATATTGCCATAGGTCTTGACATG 59.586 44.000 3.08 0.00 0.00 3.21
1834 2773 2.715749 TGCCATAGGTCTTGACATGG 57.284 50.000 12.88 12.88 40.80 3.66
1835 2774 1.212688 TGCCATAGGTCTTGACATGGG 59.787 52.381 16.68 10.93 38.70 4.00
1836 2775 1.212935 GCCATAGGTCTTGACATGGGT 59.787 52.381 16.68 0.00 38.70 4.51
1838 2777 2.505407 CCATAGGTCTTGACATGGGTGA 59.495 50.000 10.52 0.00 35.33 4.02
1839 2778 3.137176 CCATAGGTCTTGACATGGGTGAT 59.863 47.826 10.52 0.00 35.33 3.06
1840 2779 4.384056 CATAGGTCTTGACATGGGTGATC 58.616 47.826 0.00 0.00 0.00 2.92
1841 2780 1.561542 AGGTCTTGACATGGGTGATCC 59.438 52.381 0.00 0.00 0.00 3.36
1844 2783 2.118679 TCTTGACATGGGTGATCCGAT 58.881 47.619 0.00 0.00 38.76 4.18
1845 2784 2.103094 TCTTGACATGGGTGATCCGATC 59.897 50.000 1.01 1.01 38.76 3.69
1846 2785 1.494960 TGACATGGGTGATCCGATCA 58.505 50.000 7.00 7.00 38.76 2.92
1849 2788 2.614057 GACATGGGTGATCCGATCAAAC 59.386 50.000 12.75 9.19 41.69 2.93
1850 2789 2.239654 ACATGGGTGATCCGATCAAACT 59.760 45.455 12.75 0.00 41.69 2.66
1851 2790 3.282021 CATGGGTGATCCGATCAAACTT 58.718 45.455 12.75 4.76 41.69 2.66
1853 2792 2.289565 GGGTGATCCGATCAAACTTCC 58.710 52.381 12.75 9.16 41.69 3.46
1855 2794 2.939103 GGTGATCCGATCAAACTTCCAG 59.061 50.000 12.75 0.00 41.69 3.86
1857 2796 1.943340 GATCCGATCAAACTTCCAGCC 59.057 52.381 3.33 0.00 0.00 4.85
1861 2800 3.054728 TCCGATCAAACTTCCAGCCATAA 60.055 43.478 0.00 0.00 0.00 1.90
1862 2801 3.885297 CCGATCAAACTTCCAGCCATAAT 59.115 43.478 0.00 0.00 0.00 1.28
1863 2802 4.023707 CCGATCAAACTTCCAGCCATAATC 60.024 45.833 0.00 0.00 0.00 1.75
1864 2803 4.818546 CGATCAAACTTCCAGCCATAATCT 59.181 41.667 0.00 0.00 0.00 2.40
1865 2804 5.277683 CGATCAAACTTCCAGCCATAATCTG 60.278 44.000 0.00 0.00 0.00 2.90
1882 2821 9.507329 CCATAATCTGGCCACATATATAATACC 57.493 37.037 0.00 0.00 38.47 2.73
1921 2860 9.950496 ACACATTAACTCTAATTCTCTCAACAT 57.050 29.630 0.00 0.00 0.00 2.71
1923 2862 8.887717 ACATTAACTCTAATTCTCTCAACATGC 58.112 33.333 0.00 0.00 0.00 4.06
1924 2863 8.886719 CATTAACTCTAATTCTCTCAACATGCA 58.113 33.333 0.00 0.00 0.00 3.96
1925 2864 9.624373 ATTAACTCTAATTCTCTCAACATGCAT 57.376 29.630 0.00 0.00 0.00 3.96
1927 2866 8.430801 AACTCTAATTCTCTCAACATGCATAC 57.569 34.615 0.00 0.00 0.00 2.39
1928 2867 6.989169 ACTCTAATTCTCTCAACATGCATACC 59.011 38.462 0.00 0.00 0.00 2.73
1929 2868 6.291377 TCTAATTCTCTCAACATGCATACCC 58.709 40.000 0.00 0.00 0.00 3.69
1930 2869 3.998913 TTCTCTCAACATGCATACCCA 57.001 42.857 0.00 0.00 0.00 4.51
1931 2870 3.998913 TCTCTCAACATGCATACCCAA 57.001 42.857 0.00 0.00 0.00 4.12
1934 2873 5.263599 TCTCTCAACATGCATACCCAAAAT 58.736 37.500 0.00 0.00 0.00 1.82
1935 2874 5.716228 TCTCTCAACATGCATACCCAAAATT 59.284 36.000 0.00 0.00 0.00 1.82
1936 2875 6.211184 TCTCTCAACATGCATACCCAAAATTT 59.789 34.615 0.00 0.00 0.00 1.82
1939 2878 8.538701 TCTCAACATGCATACCCAAAATTTAAT 58.461 29.630 0.00 0.00 0.00 1.40
1943 2882 8.860780 ACATGCATACCCAAAATTTAATTGTT 57.139 26.923 0.00 0.00 0.00 2.83
1945 2884 7.913674 TGCATACCCAAAATTTAATTGTTCC 57.086 32.000 0.00 0.00 0.00 3.62
1946 2885 7.453393 TGCATACCCAAAATTTAATTGTTCCA 58.547 30.769 0.00 0.00 0.00 3.53
1947 2886 8.105829 TGCATACCCAAAATTTAATTGTTCCAT 58.894 29.630 0.00 0.00 0.00 3.41
1948 2887 8.611757 GCATACCCAAAATTTAATTGTTCCATC 58.388 33.333 0.00 0.00 0.00 3.51
1949 2888 9.889128 CATACCCAAAATTTAATTGTTCCATCT 57.111 29.630 0.00 0.00 0.00 2.90
1951 2890 7.394016 ACCCAAAATTTAATTGTTCCATCTCC 58.606 34.615 0.00 0.00 0.00 3.71
1952 2891 7.017056 ACCCAAAATTTAATTGTTCCATCTCCA 59.983 33.333 0.00 0.00 0.00 3.86
1953 2892 7.882271 CCCAAAATTTAATTGTTCCATCTCCAA 59.118 33.333 0.00 0.00 0.00 3.53
1954 2893 9.452287 CCAAAATTTAATTGTTCCATCTCCAAT 57.548 29.630 0.00 0.00 0.00 3.16
1958 2897 9.657419 AATTTAATTGTTCCATCTCCAATTGTC 57.343 29.630 4.43 0.00 38.75 3.18
1959 2898 8.421249 TTTAATTGTTCCATCTCCAATTGTCT 57.579 30.769 4.43 0.00 38.75 3.41
1961 2900 7.636150 AATTGTTCCATCTCCAATTGTCTAG 57.364 36.000 4.43 0.00 37.40 2.43
1962 2901 4.517285 TGTTCCATCTCCAATTGTCTAGC 58.483 43.478 4.43 0.00 0.00 3.42
1963 2902 3.459232 TCCATCTCCAATTGTCTAGCG 57.541 47.619 4.43 0.00 0.00 4.26
1964 2903 2.766263 TCCATCTCCAATTGTCTAGCGT 59.234 45.455 4.43 0.00 0.00 5.07
1965 2904 3.958147 TCCATCTCCAATTGTCTAGCGTA 59.042 43.478 4.43 0.00 0.00 4.42
1966 2905 4.051922 CCATCTCCAATTGTCTAGCGTAC 58.948 47.826 4.43 0.00 0.00 3.67
1967 2906 4.441495 CCATCTCCAATTGTCTAGCGTACA 60.441 45.833 4.43 0.00 0.00 2.90
1969 2908 4.682787 TCTCCAATTGTCTAGCGTACATG 58.317 43.478 4.43 0.00 0.00 3.21
1970 2909 3.194861 TCCAATTGTCTAGCGTACATGC 58.805 45.455 4.43 0.00 0.00 4.06
1973 2912 4.749598 CCAATTGTCTAGCGTACATGCATA 59.250 41.667 0.00 0.00 37.31 3.14
1974 2913 5.333339 CCAATTGTCTAGCGTACATGCATAC 60.333 44.000 0.00 0.00 37.31 2.39
1976 2915 4.224715 TGTCTAGCGTACATGCATACTC 57.775 45.455 0.00 0.00 37.31 2.59
1977 2916 3.883489 TGTCTAGCGTACATGCATACTCT 59.117 43.478 0.00 0.00 37.31 3.24
1979 2918 5.163550 TGTCTAGCGTACATGCATACTCTTT 60.164 40.000 0.00 0.00 37.31 2.52
1980 2919 5.174035 GTCTAGCGTACATGCATACTCTTTG 59.826 44.000 0.00 0.00 37.31 2.77
1981 2920 3.861840 AGCGTACATGCATACTCTTTGT 58.138 40.909 0.00 0.00 37.31 2.83
1982 2921 4.253685 AGCGTACATGCATACTCTTTGTT 58.746 39.130 0.00 0.00 37.31 2.83
1983 2922 4.330074 AGCGTACATGCATACTCTTTGTTC 59.670 41.667 0.00 0.00 37.31 3.18
1985 2924 5.550981 CGTACATGCATACTCTTTGTTCAC 58.449 41.667 0.00 0.00 0.00 3.18
1987 2926 5.362556 ACATGCATACTCTTTGTTCACAC 57.637 39.130 0.00 0.00 0.00 3.82
1988 2927 4.821260 ACATGCATACTCTTTGTTCACACA 59.179 37.500 0.00 0.00 0.00 3.72
1989 2928 4.811555 TGCATACTCTTTGTTCACACAC 57.188 40.909 0.00 0.00 30.32 3.82
1991 2930 4.637977 TGCATACTCTTTGTTCACACACAA 59.362 37.500 0.00 0.00 34.76 3.33
1992 2931 5.299028 TGCATACTCTTTGTTCACACACAAT 59.701 36.000 0.00 0.00 36.54 2.71
1993 2932 6.183360 TGCATACTCTTTGTTCACACACAATT 60.183 34.615 0.00 0.00 36.54 2.32
1994 2933 6.142798 GCATACTCTTTGTTCACACACAATTG 59.857 38.462 3.24 3.24 36.54 2.32
1995 2934 4.423732 ACTCTTTGTTCACACACAATTGC 58.576 39.130 5.05 0.00 36.54 3.56
1997 2936 5.070770 TCTTTGTTCACACACAATTGCTT 57.929 34.783 5.05 0.00 36.54 3.91
1998 2937 5.101628 TCTTTGTTCACACACAATTGCTTC 58.898 37.500 5.05 0.00 36.54 3.86
2000 2939 5.826601 TTGTTCACACACAATTGCTTCTA 57.173 34.783 5.05 0.00 31.48 2.10
2002 2941 6.201226 TGTTCACACACAATTGCTTCTAAA 57.799 33.333 5.05 0.00 0.00 1.85
2003 2942 6.625362 TGTTCACACACAATTGCTTCTAAAA 58.375 32.000 5.05 0.00 0.00 1.52
2004 2943 7.264221 TGTTCACACACAATTGCTTCTAAAAT 58.736 30.769 5.05 0.00 0.00 1.82
2005 2944 8.409371 TGTTCACACACAATTGCTTCTAAAATA 58.591 29.630 5.05 0.00 0.00 1.40
2006 2945 9.243637 GTTCACACACAATTGCTTCTAAAATAA 57.756 29.630 5.05 0.00 0.00 1.40
2007 2946 9.979578 TTCACACACAATTGCTTCTAAAATAAT 57.020 25.926 5.05 0.00 0.00 1.28
2010 2949 9.573133 ACACACAATTGCTTCTAAAATAATAGC 57.427 29.630 5.05 0.00 0.00 2.97
2011 2950 9.571810 CACACAATTGCTTCTAAAATAATAGCA 57.428 29.630 5.05 0.00 39.85 3.49
2076 3015 3.913548 TCATTGAAATCAACGTGTGGG 57.086 42.857 0.00 0.00 38.86 4.61
2077 3016 3.481453 TCATTGAAATCAACGTGTGGGA 58.519 40.909 0.00 0.00 38.86 4.37
2078 3017 3.885901 TCATTGAAATCAACGTGTGGGAA 59.114 39.130 0.00 0.00 38.86 3.97
2079 3018 4.339530 TCATTGAAATCAACGTGTGGGAAA 59.660 37.500 0.00 0.00 38.86 3.13
2081 3020 4.927978 TGAAATCAACGTGTGGGAAAAT 57.072 36.364 0.00 0.00 0.00 1.82
2083 3022 4.339530 TGAAATCAACGTGTGGGAAAATCA 59.660 37.500 0.00 0.00 0.00 2.57
2084 3023 3.915437 ATCAACGTGTGGGAAAATCAC 57.085 42.857 0.00 0.00 35.82 3.06
2085 3024 1.950909 TCAACGTGTGGGAAAATCACC 59.049 47.619 0.00 0.00 34.46 4.02
2086 3025 1.953686 CAACGTGTGGGAAAATCACCT 59.046 47.619 0.00 0.00 34.46 4.00
2088 3027 3.053831 ACGTGTGGGAAAATCACCTAG 57.946 47.619 0.00 0.00 34.46 3.02
2089 3028 2.370849 ACGTGTGGGAAAATCACCTAGT 59.629 45.455 0.00 0.00 34.46 2.57
2090 3029 3.181448 ACGTGTGGGAAAATCACCTAGTT 60.181 43.478 0.00 0.00 34.46 2.24
2091 3030 3.818773 CGTGTGGGAAAATCACCTAGTTT 59.181 43.478 0.00 0.00 34.46 2.66
2092 3031 4.320202 CGTGTGGGAAAATCACCTAGTTTG 60.320 45.833 0.00 0.00 34.46 2.93
2093 3032 4.825085 GTGTGGGAAAATCACCTAGTTTGA 59.175 41.667 0.00 0.00 34.46 2.69
2094 3033 5.476945 GTGTGGGAAAATCACCTAGTTTGAT 59.523 40.000 0.00 0.00 35.09 2.57
2095 3034 5.476599 TGTGGGAAAATCACCTAGTTTGATG 59.523 40.000 5.14 0.00 33.84 3.07
2097 3036 5.945784 TGGGAAAATCACCTAGTTTGATGAG 59.054 40.000 5.14 0.00 33.84 2.90
2098 3037 5.946377 GGGAAAATCACCTAGTTTGATGAGT 59.054 40.000 5.14 0.00 33.84 3.41
2099 3038 6.434340 GGGAAAATCACCTAGTTTGATGAGTT 59.566 38.462 5.14 1.81 33.84 3.01
2100 3039 7.039714 GGGAAAATCACCTAGTTTGATGAGTTT 60.040 37.037 5.14 0.00 40.79 2.66
2101 3040 7.809806 GGAAAATCACCTAGTTTGATGAGTTTG 59.190 37.037 3.56 0.00 38.90 2.93
2102 3041 7.823745 AAATCACCTAGTTTGATGAGTTTGT 57.176 32.000 5.14 0.00 33.84 2.83
2103 3042 7.440523 AATCACCTAGTTTGATGAGTTTGTC 57.559 36.000 5.14 0.00 33.84 3.18
2104 3043 5.305585 TCACCTAGTTTGATGAGTTTGTCC 58.694 41.667 0.00 0.00 0.00 4.02
2106 3045 5.530915 CACCTAGTTTGATGAGTTTGTCCAA 59.469 40.000 0.00 0.00 0.00 3.53
2108 3047 6.777580 ACCTAGTTTGATGAGTTTGTCCAAAT 59.222 34.615 0.00 0.00 32.36 2.32
2109 3048 7.086376 CCTAGTTTGATGAGTTTGTCCAAATG 58.914 38.462 0.00 0.00 32.36 2.32
2112 3051 5.471556 TTGATGAGTTTGTCCAAATGCAT 57.528 34.783 0.00 0.00 33.07 3.96
2113 3052 5.063180 TGATGAGTTTGTCCAAATGCATC 57.937 39.130 19.75 19.75 40.31 3.91
2116 3055 4.619973 TGAGTTTGTCCAAATGCATCAAC 58.380 39.130 0.00 0.00 32.36 3.18
2117 3056 4.099113 TGAGTTTGTCCAAATGCATCAACA 59.901 37.500 0.00 0.00 32.36 3.33
2120 3059 6.056884 AGTTTGTCCAAATGCATCAACAAAT 58.943 32.000 21.43 13.24 38.44 2.32
2121 3060 6.543100 AGTTTGTCCAAATGCATCAACAAATT 59.457 30.769 21.43 17.47 38.44 1.82
2122 3061 6.939132 TTGTCCAAATGCATCAACAAATTT 57.061 29.167 0.00 0.00 0.00 1.82
2129 3068 6.890663 AATGCATCAACAAATTTGGTATCG 57.109 33.333 21.74 8.14 0.00 2.92
2130 3069 5.384063 TGCATCAACAAATTTGGTATCGT 57.616 34.783 21.74 0.00 0.00 3.73
2131 3070 5.159925 TGCATCAACAAATTTGGTATCGTG 58.840 37.500 21.74 12.48 0.00 4.35
2132 3071 4.031652 GCATCAACAAATTTGGTATCGTGC 59.968 41.667 21.74 17.45 0.00 5.34
2135 3074 4.979197 TCAACAAATTTGGTATCGTGCAAC 59.021 37.500 21.74 0.00 0.00 4.17
2136 3075 4.846779 ACAAATTTGGTATCGTGCAACT 57.153 36.364 21.74 0.00 31.75 3.16
2137 3076 4.794169 ACAAATTTGGTATCGTGCAACTC 58.206 39.130 21.74 0.00 31.75 3.01
2138 3077 4.277174 ACAAATTTGGTATCGTGCAACTCA 59.723 37.500 21.74 0.00 31.75 3.41
2139 3078 4.419522 AATTTGGTATCGTGCAACTCAC 57.580 40.909 0.00 0.00 42.23 3.51
2148 3087 2.825086 GTGCAACTCACGAACAACTT 57.175 45.000 0.00 0.00 35.76 2.66
2151 3090 4.271687 GTGCAACTCACGAACAACTTAAG 58.728 43.478 0.00 0.00 35.76 1.85
2152 3091 3.311322 TGCAACTCACGAACAACTTAAGG 59.689 43.478 7.53 0.00 0.00 2.69
2155 3094 5.738370 CAACTCACGAACAACTTAAGGAAG 58.262 41.667 7.53 0.00 38.76 3.46
2157 3096 5.855045 ACTCACGAACAACTTAAGGAAGAT 58.145 37.500 7.53 0.00 36.45 2.40
2159 3098 7.612677 ACTCACGAACAACTTAAGGAAGATAT 58.387 34.615 7.53 0.00 36.45 1.63
2161 3100 7.608153 TCACGAACAACTTAAGGAAGATATGA 58.392 34.615 7.53 0.69 36.45 2.15
2162 3101 8.258007 TCACGAACAACTTAAGGAAGATATGAT 58.742 33.333 7.53 0.00 36.45 2.45
2163 3102 8.883731 CACGAACAACTTAAGGAAGATATGATT 58.116 33.333 7.53 0.00 36.45 2.57
2164 3103 8.883731 ACGAACAACTTAAGGAAGATATGATTG 58.116 33.333 7.53 0.90 36.45 2.67
2167 3106 9.965902 AACAACTTAAGGAAGATATGATTGAGT 57.034 29.630 7.53 0.00 36.45 3.41
2178 3117 9.767684 GAAGATATGATTGAGTATCTGTAGACG 57.232 37.037 0.00 0.00 37.63 4.18
2179 3118 8.275015 AGATATGATTGAGTATCTGTAGACGG 57.725 38.462 0.00 0.00 36.55 4.79
2180 3119 7.885922 AGATATGATTGAGTATCTGTAGACGGT 59.114 37.037 0.00 0.00 36.55 4.83
2181 3120 6.716934 ATGATTGAGTATCTGTAGACGGTT 57.283 37.500 0.00 0.00 34.92 4.44
2182 3121 7.818997 ATGATTGAGTATCTGTAGACGGTTA 57.181 36.000 0.00 0.00 34.92 2.85
2183 3122 7.634671 TGATTGAGTATCTGTAGACGGTTAA 57.365 36.000 0.00 0.00 34.92 2.01
2184 3123 8.058667 TGATTGAGTATCTGTAGACGGTTAAA 57.941 34.615 0.00 0.00 34.92 1.52
2185 3124 8.188799 TGATTGAGTATCTGTAGACGGTTAAAG 58.811 37.037 0.00 0.00 34.92 1.85
2186 3125 6.446781 TGAGTATCTGTAGACGGTTAAAGG 57.553 41.667 0.00 0.00 34.92 3.11
2187 3126 5.359009 TGAGTATCTGTAGACGGTTAAAGGG 59.641 44.000 0.00 0.00 34.92 3.95
2188 3127 4.648307 AGTATCTGTAGACGGTTAAAGGGG 59.352 45.833 0.00 0.00 0.00 4.79
2189 3128 3.173953 TCTGTAGACGGTTAAAGGGGA 57.826 47.619 0.00 0.00 0.00 4.81
2190 3129 3.716431 TCTGTAGACGGTTAAAGGGGAT 58.284 45.455 0.00 0.00 0.00 3.85
2191 3130 4.870636 TCTGTAGACGGTTAAAGGGGATA 58.129 43.478 0.00 0.00 0.00 2.59
2192 3131 5.271598 TCTGTAGACGGTTAAAGGGGATAA 58.728 41.667 0.00 0.00 0.00 1.75
2193 3132 5.127682 TCTGTAGACGGTTAAAGGGGATAAC 59.872 44.000 0.00 0.00 33.47 1.89
2194 3133 4.776837 TGTAGACGGTTAAAGGGGATAACA 59.223 41.667 0.00 0.00 35.44 2.41
2196 3135 5.446260 AGACGGTTAAAGGGGATAACATT 57.554 39.130 0.00 0.00 35.44 2.71
2197 3136 5.823312 AGACGGTTAAAGGGGATAACATTT 58.177 37.500 0.00 0.00 35.44 2.32
2198 3137 5.650703 AGACGGTTAAAGGGGATAACATTTG 59.349 40.000 0.00 0.00 35.44 2.32
2200 3139 5.776208 ACGGTTAAAGGGGATAACATTTGTT 59.224 36.000 1.08 1.08 41.73 2.83
2201 3140 6.071784 ACGGTTAAAGGGGATAACATTTGTTC 60.072 38.462 0.00 0.00 39.31 3.18
2204 3143 5.897377 AAAGGGGATAACATTTGTTCGAG 57.103 39.130 0.00 0.00 39.31 4.04
2205 3144 4.569719 AGGGGATAACATTTGTTCGAGT 57.430 40.909 0.00 0.00 39.31 4.18
2206 3145 4.261801 AGGGGATAACATTTGTTCGAGTG 58.738 43.478 0.00 0.00 39.31 3.51
2207 3146 4.007659 GGGGATAACATTTGTTCGAGTGT 58.992 43.478 0.00 0.00 39.31 3.55
2208 3147 5.046159 AGGGGATAACATTTGTTCGAGTGTA 60.046 40.000 0.00 0.00 39.31 2.90
2212 3274 9.052759 GGGATAACATTTGTTCGAGTGTAATAT 57.947 33.333 0.00 0.00 39.31 1.28
2236 3298 8.920509 ATTTAAATTAGAATTACCGTTGCACC 57.079 30.769 0.00 0.00 0.00 5.01
2237 3299 7.690952 TTAAATTAGAATTACCGTTGCACCT 57.309 32.000 0.00 0.00 0.00 4.00
2240 3302 2.699954 AGAATTACCGTTGCACCTGAG 58.300 47.619 0.00 0.00 0.00 3.35
2241 3303 1.130561 GAATTACCGTTGCACCTGAGC 59.869 52.381 0.00 0.00 0.00 4.26
2242 3304 0.036164 ATTACCGTTGCACCTGAGCA 59.964 50.000 0.00 0.00 43.99 4.26
2243 3305 0.036164 TTACCGTTGCACCTGAGCAT 59.964 50.000 0.00 0.00 45.19 3.79
2244 3306 0.036164 TACCGTTGCACCTGAGCATT 59.964 50.000 0.00 0.00 45.19 3.56
2245 3307 0.823356 ACCGTTGCACCTGAGCATTT 60.823 50.000 0.00 0.00 45.19 2.32
2247 3309 1.269726 CCGTTGCACCTGAGCATTTTT 60.270 47.619 0.00 0.00 45.19 1.94
2272 3334 8.534333 TTAGCTAAACTGGAATTAGATATGCG 57.466 34.615 2.97 0.00 32.93 4.73
2273 3335 5.934625 AGCTAAACTGGAATTAGATATGCGG 59.065 40.000 0.00 0.00 33.16 5.69
2274 3336 5.390991 GCTAAACTGGAATTAGATATGCGGC 60.391 44.000 0.00 0.00 33.16 6.53
2275 3337 4.357918 AACTGGAATTAGATATGCGGCT 57.642 40.909 0.00 0.00 0.00 5.52
2277 3339 5.683876 ACTGGAATTAGATATGCGGCTAT 57.316 39.130 0.00 0.00 0.00 2.97
2278 3340 6.054860 ACTGGAATTAGATATGCGGCTATT 57.945 37.500 0.00 0.00 0.00 1.73
2279 3341 6.476378 ACTGGAATTAGATATGCGGCTATTT 58.524 36.000 0.00 0.00 0.00 1.40
2280 3342 6.942576 ACTGGAATTAGATATGCGGCTATTTT 59.057 34.615 0.00 0.00 0.00 1.82
2281 3343 7.094634 ACTGGAATTAGATATGCGGCTATTTTG 60.095 37.037 0.00 0.00 0.00 2.44
2283 3345 7.119699 TGGAATTAGATATGCGGCTATTTTGAG 59.880 37.037 0.00 0.00 0.00 3.02
2284 3346 5.862924 TTAGATATGCGGCTATTTTGAGC 57.137 39.130 0.00 0.00 42.05 4.26
2286 3348 1.948104 TATGCGGCTATTTTGAGCGT 58.052 45.000 0.00 0.00 43.83 5.07
2287 3349 0.378257 ATGCGGCTATTTTGAGCGTG 59.622 50.000 0.00 0.00 43.83 5.34
2288 3350 1.583709 GCGGCTATTTTGAGCGTGC 60.584 57.895 0.00 0.00 43.83 5.34
2290 3352 1.062525 GGCTATTTTGAGCGTGCGG 59.937 57.895 0.00 0.00 43.83 5.69
2291 3353 1.366111 GGCTATTTTGAGCGTGCGGA 61.366 55.000 0.00 0.00 43.83 5.54
2292 3354 0.657840 GCTATTTTGAGCGTGCGGAT 59.342 50.000 0.00 0.00 31.57 4.18
2293 3355 1.595489 GCTATTTTGAGCGTGCGGATG 60.595 52.381 0.00 0.00 31.57 3.51
2294 3356 1.665679 CTATTTTGAGCGTGCGGATGT 59.334 47.619 0.00 0.00 0.00 3.06
2296 3358 1.732941 TTTTGAGCGTGCGGATGTAT 58.267 45.000 0.00 0.00 0.00 2.29
2297 3359 1.286501 TTTGAGCGTGCGGATGTATC 58.713 50.000 0.00 0.00 0.00 2.24
2298 3360 0.174617 TTGAGCGTGCGGATGTATCA 59.825 50.000 0.00 0.08 0.00 2.15
2301 3363 0.249073 AGCGTGCGGATGTATCAGAC 60.249 55.000 0.00 0.00 0.00 3.51
2333 7080 3.199880 AGGTGAATGTATGCAGGTAGC 57.800 47.619 0.00 0.00 45.96 3.58
2334 7081 2.774234 AGGTGAATGTATGCAGGTAGCT 59.226 45.455 0.00 0.00 45.94 3.32
2335 7082 3.200825 AGGTGAATGTATGCAGGTAGCTT 59.799 43.478 0.00 0.00 45.94 3.74
2336 7083 3.947834 GGTGAATGTATGCAGGTAGCTTT 59.052 43.478 0.00 0.00 45.94 3.51
2337 7084 4.201950 GGTGAATGTATGCAGGTAGCTTTG 60.202 45.833 0.00 0.00 45.94 2.77
2338 7085 3.947196 TGAATGTATGCAGGTAGCTTTGG 59.053 43.478 0.00 0.00 45.94 3.28
2340 7087 3.931907 TGTATGCAGGTAGCTTTGGAT 57.068 42.857 0.00 0.00 45.94 3.41
2341 7088 4.235079 TGTATGCAGGTAGCTTTGGATT 57.765 40.909 0.00 0.00 45.94 3.01
2342 7089 3.947196 TGTATGCAGGTAGCTTTGGATTG 59.053 43.478 0.00 0.00 45.94 2.67
2343 7090 2.584835 TGCAGGTAGCTTTGGATTGT 57.415 45.000 0.00 0.00 45.94 2.71
2344 7091 3.712016 TGCAGGTAGCTTTGGATTGTA 57.288 42.857 0.00 0.00 45.94 2.41
2345 7092 3.609853 TGCAGGTAGCTTTGGATTGTAG 58.390 45.455 0.00 0.00 45.94 2.74
2346 7093 2.945668 GCAGGTAGCTTTGGATTGTAGG 59.054 50.000 0.00 0.00 41.15 3.18
2347 7094 2.945668 CAGGTAGCTTTGGATTGTAGGC 59.054 50.000 0.00 0.00 0.00 3.93
2349 7096 3.118223 AGGTAGCTTTGGATTGTAGGCTC 60.118 47.826 0.00 0.00 0.00 4.70
2350 7097 2.426842 AGCTTTGGATTGTAGGCTCC 57.573 50.000 0.00 0.00 0.00 4.70
2352 7099 1.340991 GCTTTGGATTGTAGGCTCCCA 60.341 52.381 0.00 0.00 0.00 4.37
2353 7100 2.369394 CTTTGGATTGTAGGCTCCCAC 58.631 52.381 0.00 0.00 0.00 4.61
2354 7101 1.367346 TTGGATTGTAGGCTCCCACA 58.633 50.000 0.00 0.00 0.00 4.17
2356 7103 1.490490 TGGATTGTAGGCTCCCACATC 59.510 52.381 0.00 0.00 0.00 3.06
2357 7104 1.490490 GGATTGTAGGCTCCCACATCA 59.510 52.381 0.00 0.00 0.00 3.07
2358 7105 2.486191 GGATTGTAGGCTCCCACATCAG 60.486 54.545 0.00 0.00 0.00 2.90
2359 7106 1.656587 TTGTAGGCTCCCACATCAGT 58.343 50.000 0.00 0.00 0.00 3.41
2360 7107 0.904649 TGTAGGCTCCCACATCAGTG 59.095 55.000 0.00 0.00 45.47 3.66
2362 7109 1.279271 GTAGGCTCCCACATCAGTGTT 59.721 52.381 0.00 0.00 44.39 3.32
2363 7110 0.326264 AGGCTCCCACATCAGTGTTC 59.674 55.000 0.00 0.00 44.39 3.18
2364 7111 1.021390 GGCTCCCACATCAGTGTTCG 61.021 60.000 0.00 0.00 44.39 3.95
2365 7112 1.639298 GCTCCCACATCAGTGTTCGC 61.639 60.000 0.00 0.00 44.39 4.70
2367 7114 0.320683 TCCCACATCAGTGTTCGCAG 60.321 55.000 0.00 0.00 44.39 5.18
2369 7116 0.792640 CCACATCAGTGTTCGCAGAC 59.207 55.000 0.00 0.00 44.39 3.51
2370 7117 1.606480 CCACATCAGTGTTCGCAGACT 60.606 52.381 0.00 0.00 44.39 3.24
2371 7118 1.458445 CACATCAGTGTTCGCAGACTG 59.542 52.381 6.00 6.00 40.92 3.51
2372 7119 1.073964 CATCAGTGTTCGCAGACTGG 58.926 55.000 12.13 0.00 40.11 4.00
2373 7120 0.681733 ATCAGTGTTCGCAGACTGGT 59.318 50.000 12.13 2.14 40.11 4.00
2375 7122 1.000607 TCAGTGTTCGCAGACTGGTAC 60.001 52.381 12.13 0.00 40.11 3.34
2376 7123 0.317479 AGTGTTCGCAGACTGGTACC 59.683 55.000 4.43 4.43 34.32 3.34
2377 7124 0.669625 GTGTTCGCAGACTGGTACCC 60.670 60.000 10.07 0.00 34.32 3.69
2378 7125 1.079336 GTTCGCAGACTGGTACCCC 60.079 63.158 10.07 0.00 34.32 4.95
2379 7126 1.229082 TTCGCAGACTGGTACCCCT 60.229 57.895 10.07 0.77 34.32 4.79
2380 7127 1.541310 TTCGCAGACTGGTACCCCTG 61.541 60.000 10.07 14.52 34.32 4.45
2385 7132 2.529753 ACTGGTACCCCTGTCCGT 59.470 61.111 10.07 0.00 38.42 4.69
2386 7133 1.911766 ACTGGTACCCCTGTCCGTG 60.912 63.158 10.07 0.00 38.42 4.94
2387 7134 1.608336 CTGGTACCCCTGTCCGTGA 60.608 63.158 10.07 0.00 0.00 4.35
2388 7135 1.152290 TGGTACCCCTGTCCGTGAA 60.152 57.895 10.07 0.00 0.00 3.18
2389 7136 1.294459 GGTACCCCTGTCCGTGAAC 59.706 63.158 0.00 0.00 0.00 3.18
2390 7137 1.474332 GGTACCCCTGTCCGTGAACA 61.474 60.000 0.00 0.00 0.00 3.18
2391 7138 0.320160 GTACCCCTGTCCGTGAACAC 60.320 60.000 0.00 0.00 0.00 3.32
2393 7140 0.470456 ACCCCTGTCCGTGAACACTA 60.470 55.000 3.51 0.00 0.00 2.74
2394 7141 0.037605 CCCCTGTCCGTGAACACTAC 60.038 60.000 3.51 2.68 0.00 2.73
2397 7144 1.611977 CCTGTCCGTGAACACTACTCA 59.388 52.381 3.51 0.00 0.00 3.41
2398 7145 2.231478 CCTGTCCGTGAACACTACTCAT 59.769 50.000 3.51 0.00 0.00 2.90
2399 7146 3.245797 CTGTCCGTGAACACTACTCATG 58.754 50.000 3.51 0.00 0.00 3.07
2423 7379 2.159627 GTCATGTCCGATCCACACAAAC 59.840 50.000 0.00 0.00 0.00 2.93
2444 7400 2.030457 CGAACACTCAATATCCAACCGC 59.970 50.000 0.00 0.00 0.00 5.68
2517 7473 3.798878 AGCTTGACGAATGTATCATCACG 59.201 43.478 0.00 0.00 0.00 4.35
2530 7486 4.736126 ATCATCACGAACCAGTGTATCA 57.264 40.909 0.00 0.00 42.40 2.15
2532 7488 3.509967 TCATCACGAACCAGTGTATCACT 59.490 43.478 0.00 0.00 46.51 3.41
2535 7491 2.987149 CACGAACCAGTGTATCACTCAC 59.013 50.000 0.00 0.00 43.43 3.51
2541 7497 4.270834 ACCAGTGTATCACTCACTACGAT 58.729 43.478 0.00 0.00 43.43 3.73
2547 7503 7.388224 CAGTGTATCACTCACTACGATAGGTAT 59.612 40.741 0.00 0.00 43.43 2.73
2548 7504 7.603404 AGTGTATCACTCACTACGATAGGTATC 59.397 40.741 0.00 0.00 41.21 2.24
2549 7505 7.387122 GTGTATCACTCACTACGATAGGTATCA 59.613 40.741 0.00 0.00 34.96 2.15
2550 7506 8.101419 TGTATCACTCACTACGATAGGTATCAT 58.899 37.037 0.00 0.00 43.77 2.45
2554 7510 5.048643 ACTCACTACGATAGGTATCATGCAC 60.049 44.000 0.00 0.00 43.77 4.57
2555 7511 4.825085 TCACTACGATAGGTATCATGCACA 59.175 41.667 0.00 0.00 43.77 4.57
2556 7512 5.048713 TCACTACGATAGGTATCATGCACAG 60.049 44.000 0.00 0.00 43.77 3.66
2557 7513 4.827835 ACTACGATAGGTATCATGCACAGT 59.172 41.667 0.00 0.00 43.77 3.55
2558 7514 4.672587 ACGATAGGTATCATGCACAGTT 57.327 40.909 0.00 0.00 43.77 3.16
2559 7515 4.371786 ACGATAGGTATCATGCACAGTTG 58.628 43.478 0.00 0.00 43.77 3.16
2565 7536 0.542467 ATCATGCACAGTTGGGCCAA 60.542 50.000 16.66 16.66 45.73 4.52
2567 7538 2.209315 ATGCACAGTTGGGCCAACC 61.209 57.895 38.64 26.15 45.73 3.77
2590 7561 1.725557 TAGCCTACCGCAGCTCTTCG 61.726 60.000 0.00 0.00 40.56 3.79
2593 7564 4.492160 TACCGCAGCTCTTCGCCG 62.492 66.667 0.00 0.00 40.39 6.46
2600 7571 1.791914 GCAGCTCTTCGCCGAATTTTC 60.792 52.381 0.00 0.00 40.39 2.29
2608 7579 1.067706 TCGCCGAATTTTCCTGACGTA 60.068 47.619 0.00 0.00 0.00 3.57
2615 7586 3.672767 ATTTTCCTGACGTACTTCCGT 57.327 42.857 0.00 0.00 45.18 4.69
2631 7602 1.804598 CGTTACCGGGATTTTGCCC 59.195 57.895 6.32 0.00 45.10 5.36
2642 7613 4.541973 GGATTTTGCCCAGTTTCTTCAT 57.458 40.909 0.00 0.00 0.00 2.57
2643 7614 4.248058 GGATTTTGCCCAGTTTCTTCATG 58.752 43.478 0.00 0.00 0.00 3.07
2644 7615 3.749665 TTTTGCCCAGTTTCTTCATGG 57.250 42.857 0.00 0.00 0.00 3.66
2645 7616 2.380064 TTGCCCAGTTTCTTCATGGT 57.620 45.000 0.00 0.00 31.85 3.55
2646 7617 2.380064 TGCCCAGTTTCTTCATGGTT 57.620 45.000 0.00 0.00 31.85 3.67
2647 7618 2.676748 TGCCCAGTTTCTTCATGGTTT 58.323 42.857 0.00 0.00 31.85 3.27
2648 7619 2.364970 TGCCCAGTTTCTTCATGGTTTG 59.635 45.455 0.00 0.00 31.85 2.93
2649 7620 2.365293 GCCCAGTTTCTTCATGGTTTGT 59.635 45.455 0.00 0.00 31.85 2.83
2650 7621 3.572255 GCCCAGTTTCTTCATGGTTTGTA 59.428 43.478 0.00 0.00 31.85 2.41
2651 7622 4.220602 GCCCAGTTTCTTCATGGTTTGTAT 59.779 41.667 0.00 0.00 31.85 2.29
2652 7623 5.279456 GCCCAGTTTCTTCATGGTTTGTATT 60.279 40.000 0.00 0.00 31.85 1.89
2653 7624 6.741240 GCCCAGTTTCTTCATGGTTTGTATTT 60.741 38.462 0.00 0.00 31.85 1.40
2654 7625 7.524698 GCCCAGTTTCTTCATGGTTTGTATTTA 60.525 37.037 0.00 0.00 31.85 1.40
2655 7626 8.531146 CCCAGTTTCTTCATGGTTTGTATTTAT 58.469 33.333 0.00 0.00 31.85 1.40
2656 7627 9.927668 CCAGTTTCTTCATGGTTTGTATTTATT 57.072 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 7.928908 TTGAGAAACAAAACAGAATGTATGC 57.071 32.000 0.00 0.00 41.27 3.14
28 29 7.674471 AGTTAACTAGGCTCATTTGAGAAAC 57.326 36.000 6.26 1.22 44.74 2.78
150 155 1.226542 CTGCTGCCCATGGTCTCAT 59.773 57.895 11.73 0.00 0.00 2.90
151 156 2.672908 CTGCTGCCCATGGTCTCA 59.327 61.111 11.73 4.75 0.00 3.27
312 317 0.759346 GAGGTCAGTGAGGTGTTGGT 59.241 55.000 0.00 0.00 0.00 3.67
398 406 9.944376 GCACTATATTATGGAATGAAGGAAGTA 57.056 33.333 0.00 0.00 0.00 2.24
399 407 7.885399 GGCACTATATTATGGAATGAAGGAAGT 59.115 37.037 0.00 0.00 0.00 3.01
400 408 8.105829 AGGCACTATATTATGGAATGAAGGAAG 58.894 37.037 0.00 0.00 36.02 3.46
401 409 7.988937 AGGCACTATATTATGGAATGAAGGAA 58.011 34.615 0.00 0.00 36.02 3.36
434 442 7.721286 TTTGCAAAGTTTGACTTCTCAAAAA 57.279 28.000 19.82 3.43 45.89 1.94
435 443 7.903995 ATTTGCAAAGTTTGACTTCTCAAAA 57.096 28.000 19.82 6.61 45.89 2.44
436 444 7.903995 AATTTGCAAAGTTTGACTTCTCAAA 57.096 28.000 19.82 16.80 42.93 2.69
437 445 7.903995 AAATTTGCAAAGTTTGACTTCTCAA 57.096 28.000 18.47 9.48 37.47 3.02
438 446 7.903995 AAAATTTGCAAAGTTTGACTTCTCA 57.096 28.000 30.33 3.64 37.47 3.27
447 455 5.709631 ACCTTGGTCAAAATTTGCAAAGTTT 59.290 32.000 26.87 26.87 37.34 2.66
448 456 5.252547 ACCTTGGTCAAAATTTGCAAAGTT 58.747 33.333 18.47 18.47 0.00 2.66
449 457 4.842574 ACCTTGGTCAAAATTTGCAAAGT 58.157 34.783 18.19 12.65 0.00 2.66
450 458 5.816449 AACCTTGGTCAAAATTTGCAAAG 57.184 34.783 18.19 3.89 0.00 2.77
451 459 8.424918 TCTATAACCTTGGTCAAAATTTGCAAA 58.575 29.630 15.44 15.44 0.00 3.68
452 460 7.957002 TCTATAACCTTGGTCAAAATTTGCAA 58.043 30.769 0.00 0.00 0.00 4.08
453 461 7.450014 TCTCTATAACCTTGGTCAAAATTTGCA 59.550 33.333 0.00 0.00 0.00 4.08
454 462 7.826690 TCTCTATAACCTTGGTCAAAATTTGC 58.173 34.615 0.00 0.00 0.00 3.68
532 540 9.358872 GCGAAACATATATCACTAGATTCATCA 57.641 33.333 0.00 0.00 35.67 3.07
533 541 9.358872 TGCGAAACATATATCACTAGATTCATC 57.641 33.333 0.00 0.00 35.67 2.92
534 542 9.144747 GTGCGAAACATATATCACTAGATTCAT 57.855 33.333 0.00 0.00 35.67 2.57
535 543 8.360390 AGTGCGAAACATATATCACTAGATTCA 58.640 33.333 0.00 0.00 35.67 2.57
536 544 8.749841 AGTGCGAAACATATATCACTAGATTC 57.250 34.615 0.00 0.00 35.67 2.52
537 545 8.580720 AGAGTGCGAAACATATATCACTAGATT 58.419 33.333 0.00 0.00 35.23 2.40
538 546 8.116651 AGAGTGCGAAACATATATCACTAGAT 57.883 34.615 0.00 0.00 35.23 1.98
539 547 7.511959 AGAGTGCGAAACATATATCACTAGA 57.488 36.000 0.00 0.00 35.23 2.43
540 548 8.722394 TCTAGAGTGCGAAACATATATCACTAG 58.278 37.037 3.26 0.00 35.23 2.57
541 549 8.617290 TCTAGAGTGCGAAACATATATCACTA 57.383 34.615 3.26 0.00 35.23 2.74
542 550 7.511959 TCTAGAGTGCGAAACATATATCACT 57.488 36.000 2.95 2.95 37.47 3.41
543 551 7.810282 ACATCTAGAGTGCGAAACATATATCAC 59.190 37.037 0.00 0.00 0.00 3.06
544 552 7.886338 ACATCTAGAGTGCGAAACATATATCA 58.114 34.615 0.00 0.00 0.00 2.15
545 553 9.841880 TTACATCTAGAGTGCGAAACATATATC 57.158 33.333 0.00 0.00 0.00 1.63
550 558 9.547753 AATATTTACATCTAGAGTGCGAAACAT 57.452 29.630 0.00 0.00 0.00 2.71
551 559 8.942338 AATATTTACATCTAGAGTGCGAAACA 57.058 30.769 0.00 0.00 0.00 2.83
555 563 9.817809 AGAAAAATATTTACATCTAGAGTGCGA 57.182 29.630 0.01 0.00 0.00 5.10
574 582 8.630037 ACTTTGTCGAAGTTTATGGAGAAAAAT 58.370 29.630 0.00 0.00 46.34 1.82
575 583 7.992008 ACTTTGTCGAAGTTTATGGAGAAAAA 58.008 30.769 0.00 0.00 46.34 1.94
576 584 7.562454 ACTTTGTCGAAGTTTATGGAGAAAA 57.438 32.000 0.00 0.00 46.34 2.29
589 597 4.616181 AACCTCACAAACTTTGTCGAAG 57.384 40.909 4.06 0.00 43.23 3.79
590 598 4.456222 TCAAACCTCACAAACTTTGTCGAA 59.544 37.500 4.06 0.00 43.23 3.71
591 599 4.004314 TCAAACCTCACAAACTTTGTCGA 58.996 39.130 4.06 5.64 43.23 4.20
592 600 4.095610 GTCAAACCTCACAAACTTTGTCG 58.904 43.478 4.06 1.81 43.23 4.35
593 601 5.310720 AGTCAAACCTCACAAACTTTGTC 57.689 39.130 4.06 0.00 43.23 3.18
594 602 5.722021 AAGTCAAACCTCACAAACTTTGT 57.278 34.783 1.00 1.00 46.75 2.83
595 603 8.527567 TTAAAAGTCAAACCTCACAAACTTTG 57.472 30.769 0.00 0.00 37.12 2.77
596 604 9.549078 TTTTAAAAGTCAAACCTCACAAACTTT 57.451 25.926 0.00 0.00 38.27 2.66
597 605 9.549078 TTTTTAAAAGTCAAACCTCACAAACTT 57.451 25.926 0.14 0.00 0.00 2.66
622 630 9.950496 CCTCATAATGTAGTGCCTATAGATTTT 57.050 33.333 0.00 0.00 0.00 1.82
623 631 9.105844 ACCTCATAATGTAGTGCCTATAGATTT 57.894 33.333 0.00 0.00 0.00 2.17
624 632 8.671987 ACCTCATAATGTAGTGCCTATAGATT 57.328 34.615 0.00 0.00 0.00 2.40
625 633 9.944079 ATACCTCATAATGTAGTGCCTATAGAT 57.056 33.333 0.00 0.00 0.00 1.98
626 634 9.769677 AATACCTCATAATGTAGTGCCTATAGA 57.230 33.333 0.00 0.00 0.00 1.98
629 637 9.548631 ACTAATACCTCATAATGTAGTGCCTAT 57.451 33.333 0.00 0.00 0.00 2.57
630 638 8.951614 ACTAATACCTCATAATGTAGTGCCTA 57.048 34.615 0.00 0.00 0.00 3.93
631 639 7.857404 ACTAATACCTCATAATGTAGTGCCT 57.143 36.000 0.00 0.00 0.00 4.75
653 661 9.692749 CACATCATCGTTAGGTATGTAAATACT 57.307 33.333 3.05 0.00 0.00 2.12
654 662 8.922676 CCACATCATCGTTAGGTATGTAAATAC 58.077 37.037 0.00 0.00 0.00 1.89
655 663 8.644216 ACCACATCATCGTTAGGTATGTAAATA 58.356 33.333 0.00 0.00 0.00 1.40
687 704 4.247258 GCCTGATCATCATGCAAAACAAA 58.753 39.130 9.84 0.00 37.83 2.83
696 717 2.994578 GTCATCTCGCCTGATCATCATG 59.005 50.000 0.00 0.00 0.00 3.07
719 740 2.048503 GTAGCGCCTCACCGTTGT 60.049 61.111 2.29 0.00 0.00 3.32
726 747 1.911269 TGGTGGAAGTAGCGCCTCA 60.911 57.895 2.29 0.00 0.00 3.86
729 750 2.033194 GTGTGGTGGAAGTAGCGCC 61.033 63.158 2.29 0.00 0.00 6.53
767 788 0.620556 TGGCAGAGGAATTCAGGGTC 59.379 55.000 7.93 0.00 0.00 4.46
788 809 0.320697 GTGTCTAGGGACGGCTTGTT 59.679 55.000 0.00 0.00 44.83 2.83
894 916 0.536724 CGATGAGGTGGGTGATGTGA 59.463 55.000 0.00 0.00 0.00 3.58
895 917 0.250234 ACGATGAGGTGGGTGATGTG 59.750 55.000 0.00 0.00 0.00 3.21
951 973 1.531840 GATAGAGGCCAGGCGGAGA 60.532 63.158 5.01 0.00 0.00 3.71
1095 1117 1.086067 CAATGGTGAGCTCGACGCAT 61.086 55.000 9.64 10.59 42.61 4.73
1365 1393 1.199327 TCCGTGAGACACTGTTCGATC 59.801 52.381 0.00 0.00 31.34 3.69
1371 1399 0.681733 AAGCATCCGTGAGACACTGT 59.318 50.000 0.00 0.00 31.34 3.55
1414 1442 0.887247 TCGTTCCATTTGGTGCCATG 59.113 50.000 0.00 0.00 36.34 3.66
1446 1477 3.625897 CGGAGACCAGGGTGCACA 61.626 66.667 20.43 0.00 0.00 4.57
1458 1489 2.169769 GTGGTCCATTATTCCACGGAGA 59.830 50.000 0.00 0.00 41.37 3.71
1527 1558 1.543358 CTGTACTCTCTCAGCACAGCA 59.457 52.381 0.00 0.00 31.14 4.41
1528 1559 1.135141 CCTGTACTCTCTCAGCACAGC 60.135 57.143 0.00 0.00 36.20 4.40
1610 1641 2.920912 ACTCGCCAGTTTCCCCGA 60.921 61.111 0.00 0.00 0.00 5.14
1614 1645 2.359975 CCCCACTCGCCAGTTTCC 60.360 66.667 0.00 0.00 0.00 3.13
1617 1651 3.168528 ACACCCCACTCGCCAGTT 61.169 61.111 0.00 0.00 0.00 3.16
1620 1654 2.927856 ATCACACCCCACTCGCCA 60.928 61.111 0.00 0.00 0.00 5.69
1665 1699 1.450848 ATGCAGCACCATGGTCTCG 60.451 57.895 16.53 5.22 0.00 4.04
1703 1737 1.784283 CCGACCGTCAAATTTTGTTGC 59.216 47.619 8.89 1.25 0.00 4.17
1718 1752 2.457366 ATCTTATGAATCGGCCGACC 57.543 50.000 33.75 25.13 0.00 4.79
1719 1753 4.175787 AGTATCTTATGAATCGGCCGAC 57.824 45.455 33.75 20.13 0.00 4.79
1723 1757 6.216569 TGACAGAAGTATCTTATGAATCGGC 58.783 40.000 10.40 0.00 32.03 5.54
1774 1815 6.206634 TCCTCTTTGAACGCTTGTAATTGATT 59.793 34.615 0.00 0.00 0.00 2.57
1775 1816 5.705441 TCCTCTTTGAACGCTTGTAATTGAT 59.295 36.000 0.00 0.00 0.00 2.57
1795 1836 3.808618 GCAATATCCACACCCTCATCCTC 60.809 52.174 0.00 0.00 0.00 3.71
1796 1837 2.107204 GCAATATCCACACCCTCATCCT 59.893 50.000 0.00 0.00 0.00 3.24
1798 1839 2.158623 TGGCAATATCCACACCCTCATC 60.159 50.000 0.00 0.00 0.00 2.92
1800 1841 1.294041 TGGCAATATCCACACCCTCA 58.706 50.000 0.00 0.00 0.00 3.86
1801 1842 2.664402 ATGGCAATATCCACACCCTC 57.336 50.000 0.00 0.00 39.25 4.30
1803 1844 2.108250 ACCTATGGCAATATCCACACCC 59.892 50.000 0.00 0.00 39.25 4.61
1804 1845 3.073062 AGACCTATGGCAATATCCACACC 59.927 47.826 0.00 0.00 39.25 4.16
1805 1846 4.357918 AGACCTATGGCAATATCCACAC 57.642 45.455 0.00 0.00 39.25 3.82
1807 1848 4.757149 GTCAAGACCTATGGCAATATCCAC 59.243 45.833 0.00 0.00 39.25 4.02
1810 2749 5.413833 CCATGTCAAGACCTATGGCAATATC 59.586 44.000 6.62 0.00 35.78 1.63
1814 2753 2.357050 CCCATGTCAAGACCTATGGCAA 60.357 50.000 11.94 0.00 38.96 4.52
1817 2756 2.505407 TCACCCATGTCAAGACCTATGG 59.495 50.000 10.90 10.90 39.77 2.74
1821 2760 1.561542 GGATCACCCATGTCAAGACCT 59.438 52.381 0.00 0.00 34.14 3.85
1825 2764 2.158914 TGATCGGATCACCCATGTCAAG 60.159 50.000 16.44 0.00 33.59 3.02
1828 2767 2.614057 GTTTGATCGGATCACCCATGTC 59.386 50.000 19.79 3.14 39.39 3.06
1831 2770 3.545703 GAAGTTTGATCGGATCACCCAT 58.454 45.455 19.79 6.82 39.39 4.00
1833 2772 2.289565 GGAAGTTTGATCGGATCACCC 58.710 52.381 19.79 12.90 39.39 4.61
1834 2773 2.939103 CTGGAAGTTTGATCGGATCACC 59.061 50.000 19.79 16.72 39.39 4.02
1835 2774 2.352960 GCTGGAAGTTTGATCGGATCAC 59.647 50.000 19.79 9.97 35.87 3.06
1836 2775 2.632377 GCTGGAAGTTTGATCGGATCA 58.368 47.619 16.44 16.44 34.71 2.92
1838 2777 1.281867 TGGCTGGAAGTTTGATCGGAT 59.718 47.619 0.00 0.00 35.30 4.18
1839 2778 0.690192 TGGCTGGAAGTTTGATCGGA 59.310 50.000 0.00 0.00 35.30 4.55
1840 2779 1.755179 ATGGCTGGAAGTTTGATCGG 58.245 50.000 0.00 0.00 35.30 4.18
1841 2780 4.818546 AGATTATGGCTGGAAGTTTGATCG 59.181 41.667 0.00 0.00 35.30 3.69
1895 2834 9.950496 ATGTTGAGAGAATTAGAGTTAATGTGT 57.050 29.630 0.00 0.00 30.00 3.72
1897 2836 8.887717 GCATGTTGAGAGAATTAGAGTTAATGT 58.112 33.333 0.00 0.00 30.00 2.71
1898 2837 8.886719 TGCATGTTGAGAGAATTAGAGTTAATG 58.113 33.333 0.00 0.00 30.00 1.90
1899 2838 9.624373 ATGCATGTTGAGAGAATTAGAGTTAAT 57.376 29.630 0.00 0.00 0.00 1.40
1901 2840 9.534565 GTATGCATGTTGAGAGAATTAGAGTTA 57.465 33.333 10.16 0.00 0.00 2.24
1903 2842 6.989169 GGTATGCATGTTGAGAGAATTAGAGT 59.011 38.462 10.16 0.00 0.00 3.24
1904 2843 6.426328 GGGTATGCATGTTGAGAGAATTAGAG 59.574 42.308 10.16 0.00 0.00 2.43
1905 2844 6.126796 TGGGTATGCATGTTGAGAGAATTAGA 60.127 38.462 10.16 0.00 0.00 2.10
1906 2845 6.057533 TGGGTATGCATGTTGAGAGAATTAG 58.942 40.000 10.16 0.00 0.00 1.73
1909 2848 4.508551 TGGGTATGCATGTTGAGAGAAT 57.491 40.909 10.16 0.00 0.00 2.40
1913 2852 5.999205 AATTTTGGGTATGCATGTTGAGA 57.001 34.783 10.16 0.00 0.00 3.27
1914 2853 8.721019 ATTAAATTTTGGGTATGCATGTTGAG 57.279 30.769 10.16 0.00 0.00 3.02
1916 2855 8.728833 ACAATTAAATTTTGGGTATGCATGTTG 58.271 29.630 10.16 0.00 0.00 3.33
1919 2858 8.397148 GGAACAATTAAATTTTGGGTATGCATG 58.603 33.333 10.16 0.00 0.00 4.06
1921 2860 7.453393 TGGAACAATTAAATTTTGGGTATGCA 58.547 30.769 0.00 0.00 31.92 3.96
1943 2882 2.766263 ACGCTAGACAATTGGAGATGGA 59.234 45.455 10.83 0.00 0.00 3.41
1945 2884 4.682787 TGTACGCTAGACAATTGGAGATG 58.317 43.478 10.83 3.54 0.00 2.90
1946 2885 5.292765 CATGTACGCTAGACAATTGGAGAT 58.707 41.667 10.83 0.00 0.00 2.75
1947 2886 4.682787 CATGTACGCTAGACAATTGGAGA 58.317 43.478 10.83 0.00 0.00 3.71
1948 2887 3.246226 GCATGTACGCTAGACAATTGGAG 59.754 47.826 10.83 5.23 0.00 3.86
1949 2888 3.194861 GCATGTACGCTAGACAATTGGA 58.805 45.455 10.83 0.00 0.00 3.53
1950 2889 2.935849 TGCATGTACGCTAGACAATTGG 59.064 45.455 10.83 0.00 0.00 3.16
1951 2890 4.801147 ATGCATGTACGCTAGACAATTG 57.199 40.909 3.24 3.24 0.00 2.32
1952 2891 5.601662 AGTATGCATGTACGCTAGACAATT 58.398 37.500 10.16 0.00 0.00 2.32
1953 2892 5.010112 AGAGTATGCATGTACGCTAGACAAT 59.990 40.000 10.16 0.00 33.75 2.71
1954 2893 4.338400 AGAGTATGCATGTACGCTAGACAA 59.662 41.667 10.16 0.00 33.75 3.18
1955 2894 3.883489 AGAGTATGCATGTACGCTAGACA 59.117 43.478 10.16 0.00 33.75 3.41
1956 2895 4.491234 AGAGTATGCATGTACGCTAGAC 57.509 45.455 10.16 0.00 33.75 2.59
1957 2896 5.163550 ACAAAGAGTATGCATGTACGCTAGA 60.164 40.000 10.16 0.00 34.29 2.43
1958 2897 5.043903 ACAAAGAGTATGCATGTACGCTAG 58.956 41.667 10.16 6.79 34.29 3.42
1959 2898 5.006153 ACAAAGAGTATGCATGTACGCTA 57.994 39.130 10.16 0.00 34.29 4.26
1961 2900 4.092821 TGAACAAAGAGTATGCATGTACGC 59.907 41.667 10.16 1.96 0.00 4.42
1962 2901 5.120053 TGTGAACAAAGAGTATGCATGTACG 59.880 40.000 10.16 0.00 0.00 3.67
1963 2902 6.073276 TGTGTGAACAAAGAGTATGCATGTAC 60.073 38.462 10.16 0.00 0.00 2.90
1964 2903 5.994668 TGTGTGAACAAAGAGTATGCATGTA 59.005 36.000 10.16 0.00 0.00 2.29
1965 2904 4.821260 TGTGTGAACAAAGAGTATGCATGT 59.179 37.500 10.16 0.00 0.00 3.21
1966 2905 5.149273 GTGTGTGAACAAAGAGTATGCATG 58.851 41.667 10.16 0.00 0.00 4.06
1967 2906 4.821260 TGTGTGTGAACAAAGAGTATGCAT 59.179 37.500 3.79 3.79 0.00 3.96
1969 2908 4.811555 TGTGTGTGAACAAAGAGTATGC 57.188 40.909 0.00 0.00 0.00 3.14
1970 2909 6.142798 GCAATTGTGTGTGAACAAAGAGTATG 59.857 38.462 7.40 0.00 42.98 2.39
1973 2912 4.158394 AGCAATTGTGTGTGAACAAAGAGT 59.842 37.500 7.40 0.00 42.98 3.24
1974 2913 4.675510 AGCAATTGTGTGTGAACAAAGAG 58.324 39.130 7.40 0.00 42.98 2.85
1976 2915 5.104374 AGAAGCAATTGTGTGTGAACAAAG 58.896 37.500 7.40 0.00 42.98 2.77
1977 2916 5.070770 AGAAGCAATTGTGTGTGAACAAA 57.929 34.783 7.40 0.00 42.98 2.83
1979 2918 5.826601 TTAGAAGCAATTGTGTGTGAACA 57.173 34.783 7.40 0.00 0.00 3.18
1980 2919 7.698836 ATTTTAGAAGCAATTGTGTGTGAAC 57.301 32.000 7.40 0.00 0.00 3.18
1981 2920 9.979578 ATTATTTTAGAAGCAATTGTGTGTGAA 57.020 25.926 7.40 0.00 0.00 3.18
1985 2924 9.571810 TGCTATTATTTTAGAAGCAATTGTGTG 57.428 29.630 7.40 0.00 40.05 3.82
2049 2988 9.734620 CCACACGTTGATTTCAATGATAATATT 57.265 29.630 17.16 0.00 43.62 1.28
2057 2996 3.913548 TCCCACACGTTGATTTCAATG 57.086 42.857 10.27 10.27 45.70 2.82
2058 2997 4.927978 TTTCCCACACGTTGATTTCAAT 57.072 36.364 0.00 0.00 38.24 2.57
2060 2999 4.339530 TGATTTTCCCACACGTTGATTTCA 59.660 37.500 0.00 0.00 0.00 2.69
2061 3000 4.679654 GTGATTTTCCCACACGTTGATTTC 59.320 41.667 0.00 0.00 34.81 2.17
2063 3002 3.005367 GGTGATTTTCCCACACGTTGATT 59.995 43.478 0.00 0.00 36.31 2.57
2064 3003 2.556622 GGTGATTTTCCCACACGTTGAT 59.443 45.455 0.00 0.00 36.31 2.57
2066 3005 1.953686 AGGTGATTTTCCCACACGTTG 59.046 47.619 0.00 0.00 36.31 4.10
2067 3006 2.358322 AGGTGATTTTCCCACACGTT 57.642 45.000 0.00 0.00 36.31 3.99
2069 3008 3.053831 ACTAGGTGATTTTCCCACACG 57.946 47.619 0.00 0.00 36.31 4.49
2070 3009 4.825085 TCAAACTAGGTGATTTTCCCACAC 59.175 41.667 0.00 0.00 36.31 3.82
2071 3010 5.055265 TCAAACTAGGTGATTTTCCCACA 57.945 39.130 0.00 0.00 36.31 4.17
2072 3011 5.710099 TCATCAAACTAGGTGATTTTCCCAC 59.290 40.000 8.13 0.00 33.37 4.61
2074 3013 5.946377 ACTCATCAAACTAGGTGATTTTCCC 59.054 40.000 8.13 0.00 33.37 3.97
2076 3015 8.352942 ACAAACTCATCAAACTAGGTGATTTTC 58.647 33.333 8.13 0.00 33.37 2.29
2077 3016 8.237811 ACAAACTCATCAAACTAGGTGATTTT 57.762 30.769 8.13 5.25 33.37 1.82
2078 3017 7.040409 GGACAAACTCATCAAACTAGGTGATTT 60.040 37.037 8.13 0.60 33.37 2.17
2079 3018 6.431234 GGACAAACTCATCAAACTAGGTGATT 59.569 38.462 8.13 0.00 33.37 2.57
2081 3020 5.163248 TGGACAAACTCATCAAACTAGGTGA 60.163 40.000 0.00 0.00 0.00 4.02
2083 3022 5.304686 TGGACAAACTCATCAAACTAGGT 57.695 39.130 0.00 0.00 0.00 3.08
2084 3023 6.633500 TTTGGACAAACTCATCAAACTAGG 57.367 37.500 0.00 0.00 0.00 3.02
2085 3024 6.583806 GCATTTGGACAAACTCATCAAACTAG 59.416 38.462 0.00 0.00 32.51 2.57
2086 3025 6.040278 TGCATTTGGACAAACTCATCAAACTA 59.960 34.615 0.00 0.00 32.51 2.24
2088 3027 5.049167 TGCATTTGGACAAACTCATCAAAC 58.951 37.500 0.00 0.00 32.51 2.93
2089 3028 5.273674 TGCATTTGGACAAACTCATCAAA 57.726 34.783 0.00 0.00 32.51 2.69
2090 3029 4.933505 TGCATTTGGACAAACTCATCAA 57.066 36.364 0.00 0.00 32.51 2.57
2091 3030 4.523558 TGATGCATTTGGACAAACTCATCA 59.476 37.500 24.28 24.28 42.83 3.07
2092 3031 5.063180 TGATGCATTTGGACAAACTCATC 57.937 39.130 21.50 21.50 39.78 2.92
2093 3032 5.221481 TGTTGATGCATTTGGACAAACTCAT 60.221 36.000 0.00 11.09 32.51 2.90
2094 3033 4.099113 TGTTGATGCATTTGGACAAACTCA 59.901 37.500 0.00 2.02 32.51 3.41
2095 3034 4.619973 TGTTGATGCATTTGGACAAACTC 58.380 39.130 0.00 0.00 32.51 3.01
2097 3036 5.731599 TTTGTTGATGCATTTGGACAAAC 57.268 34.783 18.52 9.47 33.55 2.93
2098 3037 6.939132 AATTTGTTGATGCATTTGGACAAA 57.061 29.167 21.82 21.82 40.10 2.83
2099 3038 6.726230 CAAATTTGTTGATGCATTTGGACAA 58.274 32.000 10.15 7.27 34.37 3.18
2100 3039 6.301687 CAAATTTGTTGATGCATTTGGACA 57.698 33.333 10.15 0.93 34.37 4.02
2104 3043 7.148606 ACGATACCAAATTTGTTGATGCATTTG 60.149 33.333 16.73 0.00 36.69 2.32
2106 3045 6.310956 CACGATACCAAATTTGTTGATGCATT 59.689 34.615 16.73 0.00 0.00 3.56
2108 3047 5.159925 CACGATACCAAATTTGTTGATGCA 58.840 37.500 16.73 0.00 0.00 3.96
2109 3048 4.031652 GCACGATACCAAATTTGTTGATGC 59.968 41.667 16.73 13.51 0.00 3.91
2112 3051 4.837896 TGCACGATACCAAATTTGTTGA 57.162 36.364 16.73 2.24 0.00 3.18
2113 3052 4.981674 AGTTGCACGATACCAAATTTGTTG 59.018 37.500 16.73 5.27 0.00 3.33
2116 3055 4.616802 GTGAGTTGCACGATACCAAATTTG 59.383 41.667 11.40 11.40 37.83 2.32
2117 3056 4.794169 GTGAGTTGCACGATACCAAATTT 58.206 39.130 0.00 0.00 37.83 1.82
2129 3068 2.825086 AAGTTGTTCGTGAGTTGCAC 57.175 45.000 0.00 0.00 44.21 4.57
2130 3069 3.311322 CCTTAAGTTGTTCGTGAGTTGCA 59.689 43.478 0.97 0.00 0.00 4.08
2131 3070 3.558418 TCCTTAAGTTGTTCGTGAGTTGC 59.442 43.478 0.97 0.00 0.00 4.17
2132 3071 5.522460 TCTTCCTTAAGTTGTTCGTGAGTTG 59.478 40.000 0.97 0.00 34.13 3.16
2135 3074 7.759886 TCATATCTTCCTTAAGTTGTTCGTGAG 59.240 37.037 0.97 0.00 34.13 3.51
2136 3075 7.608153 TCATATCTTCCTTAAGTTGTTCGTGA 58.392 34.615 0.97 0.00 34.13 4.35
2137 3076 7.827819 TCATATCTTCCTTAAGTTGTTCGTG 57.172 36.000 0.97 0.00 34.13 4.35
2138 3077 8.883731 CAATCATATCTTCCTTAAGTTGTTCGT 58.116 33.333 0.97 0.00 34.13 3.85
2139 3078 9.098355 TCAATCATATCTTCCTTAAGTTGTTCG 57.902 33.333 0.97 0.00 34.13 3.95
2141 3080 9.965902 ACTCAATCATATCTTCCTTAAGTTGTT 57.034 29.630 0.97 0.00 34.13 2.83
2152 3091 9.767684 CGTCTACAGATACTCAATCATATCTTC 57.232 37.037 0.00 0.00 36.25 2.87
2155 3094 8.046294 ACCGTCTACAGATACTCAATCATATC 57.954 38.462 0.00 0.00 37.03 1.63
2157 3096 7.818997 AACCGTCTACAGATACTCAATCATA 57.181 36.000 0.00 0.00 37.03 2.15
2159 3098 7.634671 TTAACCGTCTACAGATACTCAATCA 57.365 36.000 0.00 0.00 37.03 2.57
2161 3100 7.417570 CCCTTTAACCGTCTACAGATACTCAAT 60.418 40.741 0.00 0.00 0.00 2.57
2162 3101 6.127535 CCCTTTAACCGTCTACAGATACTCAA 60.128 42.308 0.00 0.00 0.00 3.02
2163 3102 5.359009 CCCTTTAACCGTCTACAGATACTCA 59.641 44.000 0.00 0.00 0.00 3.41
2164 3103 5.221204 CCCCTTTAACCGTCTACAGATACTC 60.221 48.000 0.00 0.00 0.00 2.59
2167 3106 4.870636 TCCCCTTTAACCGTCTACAGATA 58.129 43.478 0.00 0.00 0.00 1.98
2169 3108 3.173953 TCCCCTTTAACCGTCTACAGA 57.826 47.619 0.00 0.00 0.00 3.41
2171 3110 4.776837 TGTTATCCCCTTTAACCGTCTACA 59.223 41.667 0.00 0.00 0.00 2.74
2172 3111 5.343307 TGTTATCCCCTTTAACCGTCTAC 57.657 43.478 0.00 0.00 0.00 2.59
2174 3113 5.446260 AATGTTATCCCCTTTAACCGTCT 57.554 39.130 0.00 0.00 0.00 4.18
2175 3114 5.416639 ACAAATGTTATCCCCTTTAACCGTC 59.583 40.000 0.00 0.00 0.00 4.79
2176 3115 5.326900 ACAAATGTTATCCCCTTTAACCGT 58.673 37.500 0.00 0.00 0.00 4.83
2177 3116 5.907866 ACAAATGTTATCCCCTTTAACCG 57.092 39.130 0.00 0.00 0.00 4.44
2178 3117 6.151480 TCGAACAAATGTTATCCCCTTTAACC 59.849 38.462 0.00 0.00 38.56 2.85
2179 3118 7.094506 ACTCGAACAAATGTTATCCCCTTTAAC 60.095 37.037 0.00 0.00 38.56 2.01
2180 3119 6.943718 ACTCGAACAAATGTTATCCCCTTTAA 59.056 34.615 0.00 0.00 38.56 1.52
2181 3120 6.373216 CACTCGAACAAATGTTATCCCCTTTA 59.627 38.462 0.00 0.00 38.56 1.85
2182 3121 5.183140 CACTCGAACAAATGTTATCCCCTTT 59.817 40.000 0.00 0.00 38.56 3.11
2183 3122 4.700213 CACTCGAACAAATGTTATCCCCTT 59.300 41.667 0.00 0.00 38.56 3.95
2184 3123 4.261801 CACTCGAACAAATGTTATCCCCT 58.738 43.478 0.00 0.00 38.56 4.79
2185 3124 4.007659 ACACTCGAACAAATGTTATCCCC 58.992 43.478 0.00 0.00 38.56 4.81
2186 3125 6.730960 TTACACTCGAACAAATGTTATCCC 57.269 37.500 0.00 0.00 38.56 3.85
2212 3274 8.024285 CAGGTGCAACGGTAATTCTAATTTAAA 58.976 33.333 0.00 0.00 38.12 1.52
2213 3275 7.390996 TCAGGTGCAACGGTAATTCTAATTTAA 59.609 33.333 0.72 0.00 38.12 1.52
2224 3286 0.036164 ATGCTCAGGTGCAACGGTAA 59.964 50.000 0.72 0.00 46.61 2.85
2225 3287 0.036164 AATGCTCAGGTGCAACGGTA 59.964 50.000 0.72 0.00 46.61 4.02
2226 3288 0.823356 AAATGCTCAGGTGCAACGGT 60.823 50.000 0.72 0.00 46.61 4.83
2227 3289 0.314935 AAAATGCTCAGGTGCAACGG 59.685 50.000 0.00 0.00 46.61 4.44
2228 3290 2.138596 AAAAATGCTCAGGTGCAACG 57.861 45.000 0.00 0.00 46.61 4.10
2247 3309 7.602644 CCGCATATCTAATTCCAGTTTAGCTAA 59.397 37.037 0.86 0.86 0.00 3.09
2249 3311 5.934625 CCGCATATCTAATTCCAGTTTAGCT 59.065 40.000 0.00 0.00 0.00 3.32
2251 3313 5.934625 AGCCGCATATCTAATTCCAGTTTAG 59.065 40.000 0.00 0.00 0.00 1.85
2252 3314 5.865085 AGCCGCATATCTAATTCCAGTTTA 58.135 37.500 0.00 0.00 0.00 2.01
2253 3315 4.718961 AGCCGCATATCTAATTCCAGTTT 58.281 39.130 0.00 0.00 0.00 2.66
2254 3316 4.357918 AGCCGCATATCTAATTCCAGTT 57.642 40.909 0.00 0.00 0.00 3.16
2256 3318 6.992063 AAATAGCCGCATATCTAATTCCAG 57.008 37.500 0.00 0.00 0.00 3.86
2257 3319 6.939730 TCAAAATAGCCGCATATCTAATTCCA 59.060 34.615 0.00 0.00 0.00 3.53
2258 3320 7.377766 TCAAAATAGCCGCATATCTAATTCC 57.622 36.000 0.00 0.00 0.00 3.01
2259 3321 6.963805 GCTCAAAATAGCCGCATATCTAATTC 59.036 38.462 0.00 0.00 36.45 2.17
2260 3322 6.402550 CGCTCAAAATAGCCGCATATCTAATT 60.403 38.462 0.00 0.00 39.43 1.40
2261 3323 5.063944 CGCTCAAAATAGCCGCATATCTAAT 59.936 40.000 0.00 0.00 39.43 1.73
2262 3324 4.388773 CGCTCAAAATAGCCGCATATCTAA 59.611 41.667 0.00 0.00 39.43 2.10
2263 3325 3.926527 CGCTCAAAATAGCCGCATATCTA 59.073 43.478 0.00 0.00 39.43 1.98
2265 3327 2.480419 ACGCTCAAAATAGCCGCATATC 59.520 45.455 0.00 0.00 39.43 1.63
2267 3329 1.597195 CACGCTCAAAATAGCCGCATA 59.403 47.619 0.00 0.00 39.43 3.14
2269 3331 1.793581 CACGCTCAAAATAGCCGCA 59.206 52.632 0.00 0.00 39.43 5.69
2270 3332 1.583709 GCACGCTCAAAATAGCCGC 60.584 57.895 0.00 0.00 39.43 6.53
2272 3334 1.062525 CCGCACGCTCAAAATAGCC 59.937 57.895 0.00 0.00 39.43 3.93
2273 3335 0.657840 ATCCGCACGCTCAAAATAGC 59.342 50.000 0.00 0.00 39.21 2.97
2274 3336 1.665679 ACATCCGCACGCTCAAAATAG 59.334 47.619 0.00 0.00 0.00 1.73
2275 3337 1.732941 ACATCCGCACGCTCAAAATA 58.267 45.000 0.00 0.00 0.00 1.40
2277 3339 1.663643 GATACATCCGCACGCTCAAAA 59.336 47.619 0.00 0.00 0.00 2.44
2278 3340 1.286501 GATACATCCGCACGCTCAAA 58.713 50.000 0.00 0.00 0.00 2.69
2279 3341 0.174617 TGATACATCCGCACGCTCAA 59.825 50.000 0.00 0.00 0.00 3.02
2280 3342 0.249031 CTGATACATCCGCACGCTCA 60.249 55.000 0.00 0.00 0.00 4.26
2281 3343 0.030773 TCTGATACATCCGCACGCTC 59.969 55.000 0.00 0.00 0.00 5.03
2283 3345 0.249073 AGTCTGATACATCCGCACGC 60.249 55.000 0.00 0.00 0.00 5.34
2284 3346 2.209838 AAGTCTGATACATCCGCACG 57.790 50.000 0.00 0.00 0.00 5.34
2314 7061 3.199880 AGCTACCTGCATACATTCACC 57.800 47.619 0.00 0.00 45.94 4.02
2315 7062 4.201950 CCAAAGCTACCTGCATACATTCAC 60.202 45.833 0.00 0.00 45.94 3.18
2316 7063 3.947196 CCAAAGCTACCTGCATACATTCA 59.053 43.478 0.00 0.00 45.94 2.57
2317 7064 4.199310 TCCAAAGCTACCTGCATACATTC 58.801 43.478 0.00 0.00 45.94 2.67
2321 7068 3.947834 ACAATCCAAAGCTACCTGCATAC 59.052 43.478 0.00 0.00 45.94 2.39
2322 7069 4.235079 ACAATCCAAAGCTACCTGCATA 57.765 40.909 0.00 0.00 45.94 3.14
2324 7071 2.584835 ACAATCCAAAGCTACCTGCA 57.415 45.000 0.00 0.00 45.94 4.41
2326 7073 2.945668 GCCTACAATCCAAAGCTACCTG 59.054 50.000 0.00 0.00 0.00 4.00
2327 7074 2.846827 AGCCTACAATCCAAAGCTACCT 59.153 45.455 0.00 0.00 0.00 3.08
2328 7075 3.206964 GAGCCTACAATCCAAAGCTACC 58.793 50.000 0.00 0.00 0.00 3.18
2329 7076 3.206964 GGAGCCTACAATCCAAAGCTAC 58.793 50.000 0.00 0.00 35.54 3.58
2330 7077 2.172717 GGGAGCCTACAATCCAAAGCTA 59.827 50.000 0.00 0.00 37.33 3.32
2331 7078 1.064389 GGGAGCCTACAATCCAAAGCT 60.064 52.381 0.00 0.00 37.33 3.74
2333 7080 2.290896 TGTGGGAGCCTACAATCCAAAG 60.291 50.000 2.99 0.00 37.33 2.77
2334 7081 1.707989 TGTGGGAGCCTACAATCCAAA 59.292 47.619 2.99 0.00 37.33 3.28
2335 7082 1.367346 TGTGGGAGCCTACAATCCAA 58.633 50.000 2.99 0.00 37.33 3.53
2336 7083 1.490490 GATGTGGGAGCCTACAATCCA 59.510 52.381 9.82 0.00 37.33 3.41
2337 7084 1.490490 TGATGTGGGAGCCTACAATCC 59.510 52.381 9.82 3.71 34.64 3.01
2338 7085 2.171448 ACTGATGTGGGAGCCTACAATC 59.829 50.000 9.82 8.59 0.00 2.67
2340 7087 1.278985 CACTGATGTGGGAGCCTACAA 59.721 52.381 9.82 0.00 40.33 2.41
2341 7088 0.904649 CACTGATGTGGGAGCCTACA 59.095 55.000 8.20 8.20 40.33 2.74
2342 7089 3.768633 CACTGATGTGGGAGCCTAC 57.231 57.895 0.00 0.00 40.33 3.18
2352 7099 1.606480 CCAGTCTGCGAACACTGATGT 60.606 52.381 0.00 0.00 42.37 3.06
2353 7100 1.073964 CCAGTCTGCGAACACTGATG 58.926 55.000 0.00 0.00 42.37 3.07
2354 7101 0.681733 ACCAGTCTGCGAACACTGAT 59.318 50.000 0.00 0.00 42.37 2.90
2356 7103 1.419374 GTACCAGTCTGCGAACACTG 58.581 55.000 0.00 0.00 39.90 3.66
2357 7104 0.317479 GGTACCAGTCTGCGAACACT 59.683 55.000 7.15 0.00 0.00 3.55
2358 7105 2.823628 GGTACCAGTCTGCGAACAC 58.176 57.895 7.15 0.00 0.00 3.32
2372 7119 0.320160 GTGTTCACGGACAGGGGTAC 60.320 60.000 0.00 0.00 0.00 3.34
2373 7120 0.470456 AGTGTTCACGGACAGGGGTA 60.470 55.000 0.00 0.00 0.00 3.69
2375 7122 0.037605 GTAGTGTTCACGGACAGGGG 60.038 60.000 0.00 0.00 0.00 4.79
2376 7123 0.966920 AGTAGTGTTCACGGACAGGG 59.033 55.000 11.42 0.00 0.00 4.45
2377 7124 1.611977 TGAGTAGTGTTCACGGACAGG 59.388 52.381 11.42 0.00 0.00 4.00
2378 7125 3.245797 CATGAGTAGTGTTCACGGACAG 58.754 50.000 11.42 0.00 0.00 3.51
2379 7126 2.626266 ACATGAGTAGTGTTCACGGACA 59.374 45.455 0.00 6.00 0.00 4.02
2380 7127 3.299340 ACATGAGTAGTGTTCACGGAC 57.701 47.619 0.00 1.03 0.00 4.79
2397 7144 3.031013 TGTGGATCGGACATGACTACAT 58.969 45.455 0.00 0.00 37.19 2.29
2398 7145 2.165641 GTGTGGATCGGACATGACTACA 59.834 50.000 0.00 0.00 0.00 2.74
2399 7146 2.165641 TGTGTGGATCGGACATGACTAC 59.834 50.000 0.00 0.00 0.00 2.73
2402 7358 2.093306 TTGTGTGGATCGGACATGAC 57.907 50.000 0.00 0.00 0.00 3.06
2411 7367 2.869801 TGAGTGTTCGTTTGTGTGGATC 59.130 45.455 0.00 0.00 0.00 3.36
2423 7379 2.030457 GCGGTTGGATATTGAGTGTTCG 59.970 50.000 0.00 0.00 0.00 3.95
2478 7434 7.389330 TCGTCAAGCTGGAACTCATTAAAATAA 59.611 33.333 0.00 0.00 0.00 1.40
2484 7440 3.953712 TCGTCAAGCTGGAACTCATTA 57.046 42.857 0.00 0.00 0.00 1.90
2517 7473 4.155462 TCGTAGTGAGTGATACACTGGTTC 59.845 45.833 9.15 0.00 45.44 3.62
2530 7486 5.048643 GTGCATGATACCTATCGTAGTGAGT 60.049 44.000 0.00 0.00 35.48 3.41
2532 7488 4.825085 TGTGCATGATACCTATCGTAGTGA 59.175 41.667 0.00 0.00 35.48 3.41
2535 7491 5.378292 ACTGTGCATGATACCTATCGTAG 57.622 43.478 0.00 0.00 35.48 3.51
2541 7497 2.421388 GCCCAACTGTGCATGATACCTA 60.421 50.000 0.00 0.00 0.00 3.08
2547 7503 1.152589 TTGGCCCAACTGTGCATGA 60.153 52.632 0.00 0.00 0.00 3.07
2548 7504 1.005867 GTTGGCCCAACTGTGCATG 60.006 57.895 19.45 0.00 40.73 4.06
2549 7505 2.209315 GGTTGGCCCAACTGTGCAT 61.209 57.895 24.99 0.00 43.14 3.96
2550 7506 2.837291 GGTTGGCCCAACTGTGCA 60.837 61.111 24.99 0.00 43.14 4.57
2554 7510 0.609131 CTACCTGGTTGGCCCAACTG 60.609 60.000 24.99 17.39 44.65 3.16
2555 7511 1.767692 CTACCTGGTTGGCCCAACT 59.232 57.895 24.99 8.84 44.65 3.16
2556 7512 1.977009 GCTACCTGGTTGGCCCAAC 60.977 63.158 18.56 18.56 44.65 3.77
2557 7513 2.438795 GCTACCTGGTTGGCCCAA 59.561 61.111 3.84 0.00 44.65 4.12
2558 7514 2.774322 TAGGCTACCTGGTTGGCCCA 62.774 60.000 28.05 18.65 45.07 5.36
2559 7515 1.999002 TAGGCTACCTGGTTGGCCC 60.999 63.158 28.05 15.21 45.07 5.80
2565 7536 2.038329 TGCGGTAGGCTACCTGGT 59.962 61.111 34.34 4.05 46.81 4.00
2567 7538 2.107141 GCTGCGGTAGGCTACCTG 59.893 66.667 34.34 28.08 46.81 4.00
2568 7539 2.042843 AGCTGCGGTAGGCTACCT 60.043 61.111 34.34 17.63 46.81 3.08
2590 7561 2.344025 AGTACGTCAGGAAAATTCGGC 58.656 47.619 0.00 0.00 0.00 5.54
2593 7564 3.992427 ACGGAAGTACGTCAGGAAAATTC 59.008 43.478 12.82 0.00 45.08 2.17
2622 7593 4.248058 CCATGAAGAAACTGGGCAAAATC 58.752 43.478 0.00 0.00 0.00 2.17
2623 7594 3.647590 ACCATGAAGAAACTGGGCAAAAT 59.352 39.130 0.00 0.00 34.21 1.82
2624 7595 3.037549 ACCATGAAGAAACTGGGCAAAA 58.962 40.909 0.00 0.00 34.21 2.44
2625 7596 2.676748 ACCATGAAGAAACTGGGCAAA 58.323 42.857 0.00 0.00 34.21 3.68
2626 7597 2.380064 ACCATGAAGAAACTGGGCAA 57.620 45.000 0.00 0.00 34.21 4.52
2627 7598 2.364970 CAAACCATGAAGAAACTGGGCA 59.635 45.455 0.00 0.00 34.21 5.36
2628 7599 2.365293 ACAAACCATGAAGAAACTGGGC 59.635 45.455 0.00 0.00 34.21 5.36
2629 7600 5.982890 ATACAAACCATGAAGAAACTGGG 57.017 39.130 0.00 0.00 34.21 4.45
2630 7601 9.927668 AATAAATACAAACCATGAAGAAACTGG 57.072 29.630 0.00 0.00 36.09 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.