Multiple sequence alignment - TraesCS2D01G049200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G049200 chr2D 100.000 2993 0 0 1 2993 18170945 18167953 0.000000e+00 5528.0
1 TraesCS2D01G049200 chr2D 84.725 491 48 17 2508 2993 548418855 548418387 1.620000e-127 466.0
2 TraesCS2D01G049200 chr2D 92.262 168 13 0 1 168 228425664 228425831 3.860000e-59 239.0
3 TraesCS2D01G049200 chr2A 93.144 1444 78 9 692 2129 19164458 19163030 0.000000e+00 2098.0
4 TraesCS2D01G049200 chr2A 94.048 168 10 0 1 168 702181330 702181497 3.830000e-64 255.0
5 TraesCS2D01G049200 chr2A 100.000 39 0 0 2236 2274 19163028 19162990 4.140000e-09 73.1
6 TraesCS2D01G049200 chr2B 93.015 1446 81 11 692 2129 29118718 29120151 0.000000e+00 2093.0
7 TraesCS2D01G049200 chr2B 94.939 494 17 3 200 693 29117256 29117741 0.000000e+00 767.0
8 TraesCS2D01G049200 chr2B 95.763 118 5 0 2230 2347 29120147 29120264 1.100000e-44 191.0
9 TraesCS2D01G049200 chr2B 92.035 113 8 1 2122 2233 142916424 142916536 1.110000e-34 158.0
10 TraesCS2D01G049200 chr2B 85.714 98 10 4 2507 2600 188460500 188460403 1.900000e-17 100.0
11 TraesCS2D01G049200 chr2B 85.294 102 6 8 2505 2600 73971999 73971901 2.460000e-16 97.1
12 TraesCS2D01G049200 chr4D 86.867 1363 141 26 787 2128 323098169 323096824 0.000000e+00 1491.0
13 TraesCS2D01G049200 chr5A 88.625 1222 104 19 797 2002 705349729 705348527 0.000000e+00 1454.0
14 TraesCS2D01G049200 chr5A 85.366 1435 136 46 701 2092 705403577 705402174 0.000000e+00 1419.0
15 TraesCS2D01G049200 chr5A 87.234 517 38 12 2502 2993 102997536 102997023 5.600000e-157 564.0
16 TraesCS2D01G049200 chr5A 80.186 646 68 32 2395 2993 439014826 439015458 2.130000e-116 429.0
17 TraesCS2D01G049200 chr5A 92.727 110 8 0 2123 2232 467377450 467377559 3.090000e-35 159.0
18 TraesCS2D01G049200 chr5A 90.741 108 10 0 2125 2232 308093339 308093232 8.650000e-31 145.0
19 TraesCS2D01G049200 chr3B 88.322 1216 104 25 791 1999 40773154 40774338 0.000000e+00 1424.0
20 TraesCS2D01G049200 chr3B 78.958 518 54 24 2505 2993 592118833 592119324 4.850000e-78 302.0
21 TraesCS2D01G049200 chr3B 85.437 103 7 8 2504 2600 26667709 26667809 1.900000e-17 100.0
22 TraesCS2D01G049200 chr4B 87.256 1232 120 19 787 1996 403254550 403253334 0.000000e+00 1371.0
23 TraesCS2D01G049200 chr4B 91.743 109 9 0 2124 2232 87405116 87405224 5.170000e-33 152.0
24 TraesCS2D01G049200 chr4B 90.476 63 0 2 798 854 665423190 665423252 8.900000e-11 78.7
25 TraesCS2D01G049200 chr6A 85.044 1364 148 34 797 2128 60973395 60972056 0.000000e+00 1338.0
26 TraesCS2D01G049200 chr6A 85.602 382 34 14 2508 2887 571186845 571187207 6.050000e-102 381.0
27 TraesCS2D01G049200 chr6A 92.661 109 8 0 2125 2233 170017766 170017874 1.110000e-34 158.0
28 TraesCS2D01G049200 chr6D 90.090 999 99 0 998 1996 456540531 456541529 0.000000e+00 1297.0
29 TraesCS2D01G049200 chr6D 82.031 256 26 12 2757 2993 2195002 2194748 1.820000e-47 200.0
30 TraesCS2D01G049200 chr5D 87.205 508 35 20 2507 2989 309797185 309797687 4.360000e-153 551.0
31 TraesCS2D01G049200 chr5D 84.568 162 16 7 3 159 23727663 23727820 5.170000e-33 152.0
32 TraesCS2D01G049200 chr5B 83.882 608 66 16 2396 2993 570958184 570958769 4.360000e-153 551.0
33 TraesCS2D01G049200 chr5B 86.000 100 7 7 2507 2600 672846937 672847035 1.900000e-17 100.0
34 TraesCS2D01G049200 chr5B 85.149 101 9 6 2502 2600 87140143 87140047 6.830000e-17 99.0
35 TraesCS2D01G049200 chr5B 85.859 99 7 7 2507 2600 466988375 466988279 6.830000e-17 99.0
36 TraesCS2D01G049200 chr3A 80.102 588 67 28 2396 2955 631339933 631340498 2.800000e-105 392.0
37 TraesCS2D01G049200 chr3A 85.185 81 6 4 2910 2990 631340259 631340333 8.900000e-11 78.7
38 TraesCS2D01G049200 chrUn 85.714 350 33 12 797 1140 108576492 108576830 1.320000e-93 353.0
39 TraesCS2D01G049200 chr7B 81.655 447 62 16 2509 2949 35097926 35097494 1.320000e-93 353.0
40 TraesCS2D01G049200 chr7B 82.370 346 43 15 2555 2887 530670605 530670265 4.880000e-73 285.0
41 TraesCS2D01G049200 chr7B 91.667 168 14 0 1 168 651183102 651182935 1.790000e-57 233.0
42 TraesCS2D01G049200 chr7B 86.310 168 21 1 1 168 683109986 683109821 6.590000e-42 182.0
43 TraesCS2D01G049200 chr7B 93.578 109 7 0 2125 2233 683101466 683101574 2.390000e-36 163.0
44 TraesCS2D01G049200 chr4A 82.872 397 46 19 2507 2885 651821347 651821739 1.330000e-88 337.0
45 TraesCS2D01G049200 chr6B 78.236 533 52 25 2502 2993 164574524 164574015 1.760000e-72 283.0
46 TraesCS2D01G049200 chr1D 92.262 168 11 1 1 168 15604672 15604837 1.390000e-58 237.0
47 TraesCS2D01G049200 chr1D 87.097 62 6 2 2933 2993 346365326 346365266 5.350000e-08 69.4
48 TraesCS2D01G049200 chr1D 96.875 32 1 0 160 191 15604930 15604961 1.000000e-03 54.7
49 TraesCS2D01G049200 chr7A 85.366 164 21 3 1 164 515039365 515039205 1.850000e-37 167.0
50 TraesCS2D01G049200 chr3D 93.519 108 6 1 2125 2232 260294088 260294194 3.090000e-35 159.0
51 TraesCS2D01G049200 chr3D 92.661 109 8 0 2125 2233 536331139 536331031 1.110000e-34 158.0
52 TraesCS2D01G049200 chr7D 92.593 108 8 0 2125 2232 392643335 392643228 3.990000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G049200 chr2D 18167953 18170945 2992 True 5528.00 5528 100.000000 1 2993 1 chr2D.!!$R1 2992
1 TraesCS2D01G049200 chr2A 19162990 19164458 1468 True 1085.55 2098 96.572000 692 2274 2 chr2A.!!$R1 1582
2 TraesCS2D01G049200 chr2B 29117256 29120264 3008 False 1017.00 2093 94.572333 200 2347 3 chr2B.!!$F2 2147
3 TraesCS2D01G049200 chr4D 323096824 323098169 1345 True 1491.00 1491 86.867000 787 2128 1 chr4D.!!$R1 1341
4 TraesCS2D01G049200 chr5A 705348527 705349729 1202 True 1454.00 1454 88.625000 797 2002 1 chr5A.!!$R3 1205
5 TraesCS2D01G049200 chr5A 705402174 705403577 1403 True 1419.00 1419 85.366000 701 2092 1 chr5A.!!$R4 1391
6 TraesCS2D01G049200 chr5A 102997023 102997536 513 True 564.00 564 87.234000 2502 2993 1 chr5A.!!$R1 491
7 TraesCS2D01G049200 chr5A 439014826 439015458 632 False 429.00 429 80.186000 2395 2993 1 chr5A.!!$F1 598
8 TraesCS2D01G049200 chr3B 40773154 40774338 1184 False 1424.00 1424 88.322000 791 1999 1 chr3B.!!$F2 1208
9 TraesCS2D01G049200 chr4B 403253334 403254550 1216 True 1371.00 1371 87.256000 787 1996 1 chr4B.!!$R1 1209
10 TraesCS2D01G049200 chr6A 60972056 60973395 1339 True 1338.00 1338 85.044000 797 2128 1 chr6A.!!$R1 1331
11 TraesCS2D01G049200 chr6D 456540531 456541529 998 False 1297.00 1297 90.090000 998 1996 1 chr6D.!!$F1 998
12 TraesCS2D01G049200 chr5D 309797185 309797687 502 False 551.00 551 87.205000 2507 2989 1 chr5D.!!$F2 482
13 TraesCS2D01G049200 chr5B 570958184 570958769 585 False 551.00 551 83.882000 2396 2993 1 chr5B.!!$F1 597
14 TraesCS2D01G049200 chr3A 631339933 631340498 565 False 235.35 392 82.643500 2396 2990 2 chr3A.!!$F1 594
15 TraesCS2D01G049200 chr6B 164574015 164574524 509 True 283.00 283 78.236000 2502 2993 1 chr6B.!!$R1 491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
325 326 0.035534 TTGCCTCCATGCATGTACGT 60.036 50.0 24.58 0.0 41.7 3.57 F
1197 2249 0.322456 CACAGAAAATGCGGGAGGGA 60.322 55.0 0.00 0.0 0.0 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 3003 0.107312 CTCTTCTGGGCCATGTCTGG 60.107 60.0 6.72 0.0 46.17 3.86 R
2186 3276 0.307760 CGTTTCGGACAGCTTGCTTT 59.692 50.0 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.554363 CTGACGCCGCTCCCGTAG 62.554 72.222 0.00 0.00 39.30 3.51
42 43 3.866582 GCTCCCGTAGCCCTGCAT 61.867 66.667 0.00 0.00 46.25 3.96
43 44 2.423446 CTCCCGTAGCCCTGCATC 59.577 66.667 0.00 0.00 0.00 3.91
44 45 2.041922 TCCCGTAGCCCTGCATCT 60.042 61.111 0.00 0.00 0.00 2.90
45 46 2.093537 CTCCCGTAGCCCTGCATCTC 62.094 65.000 0.00 0.00 0.00 2.75
46 47 2.028190 CCGTAGCCCTGCATCTCG 59.972 66.667 0.00 0.00 0.00 4.04
47 48 2.659897 CGTAGCCCTGCATCTCGC 60.660 66.667 0.00 0.00 42.89 5.03
48 49 2.280457 GTAGCCCTGCATCTCGCC 60.280 66.667 0.00 0.00 41.33 5.54
49 50 3.550431 TAGCCCTGCATCTCGCCC 61.550 66.667 0.00 0.00 41.33 6.13
54 55 4.827087 CTGCATCTCGCCCGCACT 62.827 66.667 0.00 0.00 41.33 4.40
55 56 4.819761 TGCATCTCGCCCGCACTC 62.820 66.667 0.00 0.00 41.33 3.51
56 57 4.819761 GCATCTCGCCCGCACTCA 62.820 66.667 0.00 0.00 32.94 3.41
57 58 2.107750 CATCTCGCCCGCACTCAT 59.892 61.111 0.00 0.00 0.00 2.90
58 59 2.107750 ATCTCGCCCGCACTCATG 59.892 61.111 0.00 0.00 0.00 3.07
59 60 3.451556 ATCTCGCCCGCACTCATGG 62.452 63.158 0.00 0.00 0.00 3.66
67 68 4.175489 GCACTCATGGCGCTGCAG 62.175 66.667 10.11 10.11 0.00 4.41
68 69 2.435410 CACTCATGGCGCTGCAGA 60.435 61.111 20.43 0.00 0.00 4.26
69 70 2.435586 ACTCATGGCGCTGCAGAC 60.436 61.111 20.43 8.42 0.00 3.51
70 71 2.435410 CTCATGGCGCTGCAGACA 60.435 61.111 20.43 13.28 0.00 3.41
103 104 2.184579 CGCGGAGAGGGGAGAAAC 59.815 66.667 0.00 0.00 0.00 2.78
104 105 2.646175 CGCGGAGAGGGGAGAAACA 61.646 63.158 0.00 0.00 0.00 2.83
105 106 1.219393 GCGGAGAGGGGAGAAACAG 59.781 63.158 0.00 0.00 0.00 3.16
106 107 1.219393 CGGAGAGGGGAGAAACAGC 59.781 63.158 0.00 0.00 0.00 4.40
107 108 1.604915 GGAGAGGGGAGAAACAGCC 59.395 63.158 0.00 0.00 0.00 4.85
108 109 1.201429 GGAGAGGGGAGAAACAGCCA 61.201 60.000 0.00 0.00 0.00 4.75
109 110 0.915364 GAGAGGGGAGAAACAGCCAT 59.085 55.000 0.00 0.00 0.00 4.40
110 111 0.622665 AGAGGGGAGAAACAGCCATG 59.377 55.000 0.00 0.00 0.00 3.66
111 112 1.000396 AGGGGAGAAACAGCCATGC 60.000 57.895 0.00 0.00 0.00 4.06
112 113 2.054453 GGGGAGAAACAGCCATGCC 61.054 63.158 0.00 0.00 0.00 4.40
113 114 2.409870 GGGAGAAACAGCCATGCCG 61.410 63.158 0.00 0.00 0.00 5.69
114 115 2.486966 GAGAAACAGCCATGCCGC 59.513 61.111 0.00 0.00 0.00 6.53
115 116 3.056313 GAGAAACAGCCATGCCGCC 62.056 63.158 0.00 0.00 0.00 6.13
116 117 3.372730 GAAACAGCCATGCCGCCA 61.373 61.111 0.00 0.00 0.00 5.69
117 118 3.631487 GAAACAGCCATGCCGCCAC 62.631 63.158 0.00 0.00 0.00 5.01
123 124 4.431131 CCATGCCGCCACCTTCCT 62.431 66.667 0.00 0.00 0.00 3.36
124 125 2.361610 CATGCCGCCACCTTCCTT 60.362 61.111 0.00 0.00 0.00 3.36
125 126 2.361610 ATGCCGCCACCTTCCTTG 60.362 61.111 0.00 0.00 0.00 3.61
126 127 3.944250 ATGCCGCCACCTTCCTTGG 62.944 63.158 0.00 0.00 37.17 3.61
128 129 4.740822 CCGCCACCTTCCTTGGGG 62.741 72.222 0.00 0.00 44.72 4.96
130 131 4.299796 GCCACCTTCCTTGGGGCA 62.300 66.667 0.00 0.00 40.67 5.36
131 132 2.283173 CCACCTTCCTTGGGGCAC 60.283 66.667 0.00 0.00 0.00 5.01
132 133 2.672996 CACCTTCCTTGGGGCACG 60.673 66.667 0.00 0.00 0.00 5.34
133 134 4.660938 ACCTTCCTTGGGGCACGC 62.661 66.667 0.00 0.00 43.69 5.34
184 185 4.166011 GCTGCGGCGCTAGGTTTG 62.166 66.667 33.26 14.07 0.00 2.93
185 186 2.742372 CTGCGGCGCTAGGTTTGT 60.742 61.111 33.26 0.00 0.00 2.83
186 187 3.027170 CTGCGGCGCTAGGTTTGTG 62.027 63.158 33.26 7.60 0.00 3.33
187 188 3.047877 GCGGCGCTAGGTTTGTGT 61.048 61.111 26.86 0.00 0.00 3.72
188 189 2.860293 CGGCGCTAGGTTTGTGTG 59.140 61.111 7.64 0.00 0.00 3.82
189 190 1.666553 CGGCGCTAGGTTTGTGTGA 60.667 57.895 7.64 0.00 0.00 3.58
190 191 1.019278 CGGCGCTAGGTTTGTGTGAT 61.019 55.000 7.64 0.00 0.00 3.06
191 192 0.447801 GGCGCTAGGTTTGTGTGATG 59.552 55.000 7.64 0.00 0.00 3.07
192 193 0.179189 GCGCTAGGTTTGTGTGATGC 60.179 55.000 0.00 0.00 0.00 3.91
193 194 0.095245 CGCTAGGTTTGTGTGATGCG 59.905 55.000 0.00 0.00 36.41 4.73
194 195 0.447801 GCTAGGTTTGTGTGATGCGG 59.552 55.000 0.00 0.00 0.00 5.69
195 196 1.808411 CTAGGTTTGTGTGATGCGGT 58.192 50.000 0.00 0.00 0.00 5.68
196 197 2.151202 CTAGGTTTGTGTGATGCGGTT 58.849 47.619 0.00 0.00 0.00 4.44
197 198 1.398692 AGGTTTGTGTGATGCGGTTT 58.601 45.000 0.00 0.00 0.00 3.27
198 199 1.336755 AGGTTTGTGTGATGCGGTTTC 59.663 47.619 0.00 0.00 0.00 2.78
199 200 1.066303 GGTTTGTGTGATGCGGTTTCA 59.934 47.619 0.00 0.00 0.00 2.69
200 201 2.288152 GGTTTGTGTGATGCGGTTTCAT 60.288 45.455 0.00 0.00 0.00 2.57
201 202 3.057876 GGTTTGTGTGATGCGGTTTCATA 60.058 43.478 0.00 0.00 0.00 2.15
202 203 4.380444 GGTTTGTGTGATGCGGTTTCATAT 60.380 41.667 0.00 0.00 0.00 1.78
203 204 5.163703 GGTTTGTGTGATGCGGTTTCATATA 60.164 40.000 0.00 0.00 0.00 0.86
204 205 6.459573 GGTTTGTGTGATGCGGTTTCATATAT 60.460 38.462 0.00 0.00 0.00 0.86
205 206 5.671742 TGTGTGATGCGGTTTCATATATG 57.328 39.130 6.36 6.36 0.00 1.78
233 234 9.864034 GTTGTATACATGATTACAACTGCATAC 57.136 33.333 28.50 14.63 45.05 2.39
236 237 9.219603 GTATACATGATTACAACTGCATACCAT 57.780 33.333 0.00 0.00 0.00 3.55
285 286 6.530019 ACACCCAAAAGATATGTTCATTCC 57.470 37.500 0.00 0.00 0.00 3.01
314 315 1.866483 ATGCACCCAGATTGCCTCCA 61.866 55.000 0.00 0.00 39.39 3.86
324 325 1.265095 GATTGCCTCCATGCATGTACG 59.735 52.381 24.58 10.30 41.70 3.67
325 326 0.035534 TTGCCTCCATGCATGTACGT 60.036 50.000 24.58 0.00 41.70 3.57
326 327 0.827368 TGCCTCCATGCATGTACGTA 59.173 50.000 24.58 8.20 36.04 3.57
327 328 1.217882 GCCTCCATGCATGTACGTAC 58.782 55.000 24.58 18.90 0.00 3.67
336 337 5.579119 CCATGCATGTACGTACTTTCTGTAA 59.421 40.000 25.12 3.99 32.25 2.41
344 345 5.494390 ACGTACTTTCTGTAAATCCCCTT 57.506 39.130 0.00 0.00 32.25 3.95
345 346 5.872963 ACGTACTTTCTGTAAATCCCCTTT 58.127 37.500 0.00 0.00 32.25 3.11
447 448 7.949690 AATAAAGTCGTAAATTTAAGGCCCT 57.050 32.000 11.42 3.06 0.00 5.19
505 506 3.133003 AGCACCGATGAAGCAACTAGTAT 59.867 43.478 0.00 0.00 0.00 2.12
506 507 4.341235 AGCACCGATGAAGCAACTAGTATA 59.659 41.667 0.00 0.00 0.00 1.47
535 536 4.584638 TGATATTTGCCACCAGGTTACT 57.415 40.909 0.00 0.00 37.19 2.24
562 563 1.792949 CTGCAAGTCAGTACGGTGAAC 59.207 52.381 0.00 0.00 38.02 3.18
582 583 1.895131 CCATTTAGCAACAAGGCCACT 59.105 47.619 5.01 0.00 0.00 4.00
612 613 3.044059 GAACAGGCATGCGAGGCAC 62.044 63.158 12.44 0.00 43.04 5.01
629 630 1.066430 GCACTGGGATCGGTTCTGTAA 60.066 52.381 0.00 0.00 0.00 2.41
630 631 2.893637 CACTGGGATCGGTTCTGTAAG 58.106 52.381 0.00 0.00 0.00 2.34
660 661 2.227388 GCATGAACATGATCCGGATTCC 59.773 50.000 20.22 7.35 41.20 3.01
673 674 1.224965 GGATTCCAGCGAGATCAAGC 58.775 55.000 0.00 4.50 0.00 4.01
722 1706 7.938563 AGCTCTTTATTCAAAGCTATCTACG 57.061 36.000 0.00 0.00 40.89 3.51
723 1707 6.422400 AGCTCTTTATTCAAAGCTATCTACGC 59.578 38.462 0.00 0.00 40.89 4.42
994 2043 1.757699 CCTGAGGTACCTAGAAGGCAC 59.242 57.143 16.29 0.00 39.63 5.01
1038 2090 2.763215 GTGGATGCCCTGGTCCAA 59.237 61.111 6.13 0.00 45.50 3.53
1167 2219 1.594293 CGTGGACGTGACCAAGCTT 60.594 57.895 0.00 0.00 41.87 3.74
1197 2249 0.322456 CACAGAAAATGCGGGAGGGA 60.322 55.000 0.00 0.00 0.00 4.20
1431 2483 1.605712 CCGTTCAGCTCTTTCGTCCTT 60.606 52.381 0.00 0.00 0.00 3.36
1476 2528 2.693797 TGTTCGACAACTACGACCTC 57.306 50.000 0.00 0.00 39.46 3.85
1680 2732 2.042259 CGGTGCACACATGGCAGAT 61.042 57.895 20.43 0.00 42.85 2.90
1749 2801 3.454573 CCGATCGTCGACCCCCAA 61.455 66.667 15.09 0.00 43.74 4.12
1800 2852 2.272146 GTGTGCCACCCGGATGAT 59.728 61.111 0.73 0.00 0.00 2.45
1824 2876 2.699954 GTGGTGAACTCCGTCATCATT 58.300 47.619 0.00 0.00 40.66 2.57
1853 2905 2.048023 CCAAGGACGTGCATGCCAT 61.048 57.895 16.68 0.00 0.00 4.40
1939 3003 1.021390 CAGGTTCGGTGAGATGGTGC 61.021 60.000 0.00 0.00 0.00 5.01
2006 3070 3.548268 GTCTTTTGATCGATCGTCCAGAC 59.452 47.826 20.03 20.84 0.00 3.51
2008 3072 3.422417 TTTGATCGATCGTCCAGACTC 57.578 47.619 20.03 2.99 0.00 3.36
2009 3073 1.309950 TGATCGATCGTCCAGACTCC 58.690 55.000 20.03 0.00 0.00 3.85
2011 3075 1.265635 GATCGATCGTCCAGACTCCAG 59.734 57.143 15.94 0.00 0.00 3.86
2081 3156 3.907788 GCAACCGTACGTGTTATTTTTCC 59.092 43.478 15.21 0.00 0.00 3.13
2082 3157 4.319694 GCAACCGTACGTGTTATTTTTCCT 60.320 41.667 15.21 0.00 0.00 3.36
2083 3158 5.107143 GCAACCGTACGTGTTATTTTTCCTA 60.107 40.000 15.21 0.00 0.00 2.94
2084 3159 6.298853 CAACCGTACGTGTTATTTTTCCTAC 58.701 40.000 15.21 0.00 0.00 3.18
2085 3160 5.783111 ACCGTACGTGTTATTTTTCCTACT 58.217 37.500 15.21 0.00 0.00 2.57
2086 3161 6.919721 ACCGTACGTGTTATTTTTCCTACTA 58.080 36.000 15.21 0.00 0.00 1.82
2087 3162 6.806739 ACCGTACGTGTTATTTTTCCTACTAC 59.193 38.462 15.21 0.00 0.00 2.73
2088 3163 7.029563 CCGTACGTGTTATTTTTCCTACTACT 58.970 38.462 15.21 0.00 0.00 2.57
2089 3164 8.181573 CCGTACGTGTTATTTTTCCTACTACTA 58.818 37.037 15.21 0.00 0.00 1.82
2129 3219 7.851387 TTCAAGTCATGTGTTGTTTGTACTA 57.149 32.000 8.87 0.00 0.00 1.82
2130 3220 8.445275 TTCAAGTCATGTGTTGTTTGTACTAT 57.555 30.769 8.87 0.00 0.00 2.12
2131 3221 8.083462 TCAAGTCATGTGTTGTTTGTACTATC 57.917 34.615 8.87 0.00 0.00 2.08
2132 3222 7.931407 TCAAGTCATGTGTTGTTTGTACTATCT 59.069 33.333 8.87 0.00 0.00 1.98
2133 3223 7.891183 AGTCATGTGTTGTTTGTACTATCTC 57.109 36.000 0.00 0.00 0.00 2.75
2134 3224 7.671302 AGTCATGTGTTGTTTGTACTATCTCT 58.329 34.615 0.00 0.00 0.00 3.10
2135 3225 7.600375 AGTCATGTGTTGTTTGTACTATCTCTG 59.400 37.037 0.00 0.00 0.00 3.35
2136 3226 7.385205 GTCATGTGTTGTTTGTACTATCTCTGT 59.615 37.037 0.00 0.00 0.00 3.41
2137 3227 7.931407 TCATGTGTTGTTTGTACTATCTCTGTT 59.069 33.333 0.00 0.00 0.00 3.16
2138 3228 8.559536 CATGTGTTGTTTGTACTATCTCTGTTT 58.440 33.333 0.00 0.00 0.00 2.83
2139 3229 9.772973 ATGTGTTGTTTGTACTATCTCTGTTTA 57.227 29.630 0.00 0.00 0.00 2.01
2140 3230 9.772973 TGTGTTGTTTGTACTATCTCTGTTTAT 57.227 29.630 0.00 0.00 0.00 1.40
2155 3245 9.798994 ATCTCTGTTTATTTCTATACGACGTTT 57.201 29.630 5.50 0.00 0.00 3.60
2156 3246 9.630098 TCTCTGTTTATTTCTATACGACGTTTT 57.370 29.630 5.50 0.00 0.00 2.43
2165 3255 8.969121 TTTCTATACGACGTTTTAGACATTCA 57.031 30.769 5.50 0.00 0.00 2.57
2166 3256 8.610855 TTCTATACGACGTTTTAGACATTCAG 57.389 34.615 5.50 0.00 0.00 3.02
2167 3257 7.977904 TCTATACGACGTTTTAGACATTCAGA 58.022 34.615 5.50 0.00 0.00 3.27
2168 3258 6.866179 ATACGACGTTTTAGACATTCAGAC 57.134 37.500 5.50 0.00 0.00 3.51
2169 3259 4.613944 ACGACGTTTTAGACATTCAGACA 58.386 39.130 0.00 0.00 0.00 3.41
2170 3260 5.227908 ACGACGTTTTAGACATTCAGACAT 58.772 37.500 0.00 0.00 0.00 3.06
2171 3261 5.694910 ACGACGTTTTAGACATTCAGACATT 59.305 36.000 0.00 0.00 0.00 2.71
2172 3262 6.009474 CGACGTTTTAGACATTCAGACATTG 58.991 40.000 0.00 0.00 0.00 2.82
2173 3263 6.346598 CGACGTTTTAGACATTCAGACATTGT 60.347 38.462 0.00 0.00 0.00 2.71
2174 3264 7.259290 ACGTTTTAGACATTCAGACATTGTT 57.741 32.000 0.00 0.00 0.00 2.83
2175 3265 7.352739 ACGTTTTAGACATTCAGACATTGTTC 58.647 34.615 0.00 0.00 0.00 3.18
2176 3266 7.011950 ACGTTTTAGACATTCAGACATTGTTCA 59.988 33.333 0.00 0.00 0.00 3.18
2177 3267 8.017373 CGTTTTAGACATTCAGACATTGTTCAT 58.983 33.333 0.00 0.00 0.00 2.57
2181 3271 7.984422 AGACATTCAGACATTGTTCATAACA 57.016 32.000 0.00 0.00 40.21 2.41
2182 3272 8.037382 AGACATTCAGACATTGTTCATAACAG 57.963 34.615 0.00 0.00 43.27 3.16
2183 3273 7.663081 AGACATTCAGACATTGTTCATAACAGT 59.337 33.333 0.00 0.00 43.27 3.55
2184 3274 8.846943 ACATTCAGACATTGTTCATAACAGTA 57.153 30.769 0.00 0.00 43.27 2.74
2185 3275 8.721478 ACATTCAGACATTGTTCATAACAGTAC 58.279 33.333 0.00 0.00 43.27 2.73
2186 3276 8.720562 CATTCAGACATTGTTCATAACAGTACA 58.279 33.333 0.00 0.00 43.27 2.90
2187 3277 8.669946 TTCAGACATTGTTCATAACAGTACAA 57.330 30.769 0.00 0.00 43.27 2.41
2188 3278 8.669946 TCAGACATTGTTCATAACAGTACAAA 57.330 30.769 0.00 0.00 43.27 2.83
2189 3279 8.773645 TCAGACATTGTTCATAACAGTACAAAG 58.226 33.333 0.00 0.00 43.27 2.77
2190 3280 7.535258 CAGACATTGTTCATAACAGTACAAAGC 59.465 37.037 0.00 0.00 43.27 3.51
2191 3281 7.228507 AGACATTGTTCATAACAGTACAAAGCA 59.771 33.333 0.00 0.00 43.27 3.91
2192 3282 7.711846 ACATTGTTCATAACAGTACAAAGCAA 58.288 30.769 0.00 0.00 43.27 3.91
2193 3283 7.862372 ACATTGTTCATAACAGTACAAAGCAAG 59.138 33.333 0.00 0.00 43.27 4.01
2194 3284 5.757886 TGTTCATAACAGTACAAAGCAAGC 58.242 37.500 0.00 0.00 36.25 4.01
2195 3285 5.530915 TGTTCATAACAGTACAAAGCAAGCT 59.469 36.000 0.00 0.00 36.25 3.74
2196 3286 5.611796 TCATAACAGTACAAAGCAAGCTG 57.388 39.130 0.00 0.00 0.00 4.24
2197 3287 5.063204 TCATAACAGTACAAAGCAAGCTGT 58.937 37.500 0.00 0.00 41.51 4.40
2198 3288 3.971032 AACAGTACAAAGCAAGCTGTC 57.029 42.857 0.00 0.00 39.19 3.51
2199 3289 2.222027 ACAGTACAAAGCAAGCTGTCC 58.778 47.619 0.00 0.00 35.78 4.02
2200 3290 1.195448 CAGTACAAAGCAAGCTGTCCG 59.805 52.381 0.00 0.00 0.00 4.79
2201 3291 1.070134 AGTACAAAGCAAGCTGTCCGA 59.930 47.619 0.00 0.00 0.00 4.55
2202 3292 1.871039 GTACAAAGCAAGCTGTCCGAA 59.129 47.619 0.00 0.00 0.00 4.30
2203 3293 1.388547 ACAAAGCAAGCTGTCCGAAA 58.611 45.000 0.00 0.00 0.00 3.46
2204 3294 1.065551 ACAAAGCAAGCTGTCCGAAAC 59.934 47.619 0.00 0.00 0.00 2.78
2205 3295 0.307760 AAAGCAAGCTGTCCGAAACG 59.692 50.000 0.00 0.00 0.00 3.60
2206 3296 0.814010 AAGCAAGCTGTCCGAAACGT 60.814 50.000 0.00 0.00 0.00 3.99
2207 3297 1.204312 GCAAGCTGTCCGAAACGTC 59.796 57.895 0.00 0.00 0.00 4.34
2208 3298 1.222115 GCAAGCTGTCCGAAACGTCT 61.222 55.000 0.00 0.00 0.00 4.18
2209 3299 1.217882 CAAGCTGTCCGAAACGTCTT 58.782 50.000 0.00 0.00 0.00 3.01
2210 3300 2.400399 CAAGCTGTCCGAAACGTCTTA 58.600 47.619 0.00 0.00 0.00 2.10
2211 3301 2.993899 CAAGCTGTCCGAAACGTCTTAT 59.006 45.455 0.00 0.00 0.00 1.73
2212 3302 4.171005 CAAGCTGTCCGAAACGTCTTATA 58.829 43.478 0.00 0.00 0.00 0.98
2213 3303 4.445452 AGCTGTCCGAAACGTCTTATAA 57.555 40.909 0.00 0.00 0.00 0.98
2214 3304 4.813027 AGCTGTCCGAAACGTCTTATAAA 58.187 39.130 0.00 0.00 0.00 1.40
2215 3305 5.232463 AGCTGTCCGAAACGTCTTATAAAA 58.768 37.500 0.00 0.00 0.00 1.52
2216 3306 5.697633 AGCTGTCCGAAACGTCTTATAAAAA 59.302 36.000 0.00 0.00 0.00 1.94
2217 3307 5.787062 GCTGTCCGAAACGTCTTATAAAAAC 59.213 40.000 0.00 0.00 0.00 2.43
2218 3308 6.564499 GCTGTCCGAAACGTCTTATAAAAACA 60.564 38.462 0.00 0.00 0.00 2.83
2219 3309 7.244166 TGTCCGAAACGTCTTATAAAAACAA 57.756 32.000 0.00 0.00 0.00 2.83
2220 3310 7.692088 TGTCCGAAACGTCTTATAAAAACAAA 58.308 30.769 0.00 0.00 0.00 2.83
2221 3311 7.639461 TGTCCGAAACGTCTTATAAAAACAAAC 59.361 33.333 0.00 0.00 0.00 2.93
2222 3312 6.845280 TCCGAAACGTCTTATAAAAACAAACG 59.155 34.615 0.00 0.00 35.00 3.60
2223 3313 6.085328 CCGAAACGTCTTATAAAAACAAACGG 59.915 38.462 0.00 0.00 33.26 4.44
2224 3314 6.845280 CGAAACGTCTTATAAAAACAAACGGA 59.155 34.615 0.00 0.00 33.26 4.69
2225 3315 7.057566 CGAAACGTCTTATAAAAACAAACGGAG 59.942 37.037 0.00 0.00 33.26 4.63
2226 3316 6.232139 ACGTCTTATAAAAACAAACGGAGG 57.768 37.500 0.00 0.00 33.26 4.30
2227 3317 5.179929 ACGTCTTATAAAAACAAACGGAGGG 59.820 40.000 0.00 0.00 33.26 4.30
2228 3318 5.409214 CGTCTTATAAAAACAAACGGAGGGA 59.591 40.000 0.00 0.00 0.00 4.20
2229 3319 6.401796 CGTCTTATAAAAACAAACGGAGGGAG 60.402 42.308 0.00 0.00 0.00 4.30
2230 3320 6.429078 GTCTTATAAAAACAAACGGAGGGAGT 59.571 38.462 0.00 0.00 0.00 3.85
2231 3321 7.603784 GTCTTATAAAAACAAACGGAGGGAGTA 59.396 37.037 0.00 0.00 0.00 2.59
2232 3322 7.603784 TCTTATAAAAACAAACGGAGGGAGTAC 59.396 37.037 0.00 0.00 0.00 2.73
2233 3323 2.556144 AAACAAACGGAGGGAGTACC 57.444 50.000 0.00 0.00 40.67 3.34
2338 3428 7.442364 AGTTCACAAATAGTATGATGGATTCGG 59.558 37.037 2.34 0.00 0.00 4.30
2347 3437 7.540474 AGTATGATGGATTCGGTTACATACT 57.460 36.000 0.00 0.00 41.80 2.12
2348 3438 7.603651 AGTATGATGGATTCGGTTACATACTC 58.396 38.462 0.00 0.00 42.45 2.59
2349 3439 4.866921 TGATGGATTCGGTTACATACTCG 58.133 43.478 0.00 0.00 0.00 4.18
2350 3440 4.340097 TGATGGATTCGGTTACATACTCGT 59.660 41.667 0.00 0.00 0.00 4.18
2351 3441 5.532032 TGATGGATTCGGTTACATACTCGTA 59.468 40.000 0.00 0.00 0.00 3.43
2352 3442 5.173774 TGGATTCGGTTACATACTCGTAC 57.826 43.478 0.00 0.00 0.00 3.67
2353 3443 4.214437 GGATTCGGTTACATACTCGTACG 58.786 47.826 9.53 9.53 0.00 3.67
2354 3444 3.673746 TTCGGTTACATACTCGTACGG 57.326 47.619 16.52 8.79 0.00 4.02
2355 3445 1.939934 TCGGTTACATACTCGTACGGG 59.060 52.381 15.01 15.01 0.00 5.28
2356 3446 1.939934 CGGTTACATACTCGTACGGGA 59.060 52.381 24.57 6.64 0.00 5.14
2357 3447 2.032549 CGGTTACATACTCGTACGGGAG 60.033 54.545 24.57 12.52 39.97 4.30
2371 3461 3.067684 ACGGGAGTACCATTTTTCCAG 57.932 47.619 0.00 0.00 44.60 3.86
2372 3462 2.374170 ACGGGAGTACCATTTTTCCAGT 59.626 45.455 0.00 0.00 44.60 4.00
2373 3463 2.747446 CGGGAGTACCATTTTTCCAGTG 59.253 50.000 0.00 0.00 40.22 3.66
2374 3464 3.763057 GGGAGTACCATTTTTCCAGTGT 58.237 45.455 0.00 0.00 39.85 3.55
2375 3465 3.756963 GGGAGTACCATTTTTCCAGTGTC 59.243 47.826 0.00 0.00 39.85 3.67
2376 3466 4.394729 GGAGTACCATTTTTCCAGTGTCA 58.605 43.478 0.00 0.00 35.97 3.58
2377 3467 4.825085 GGAGTACCATTTTTCCAGTGTCAA 59.175 41.667 0.00 0.00 35.97 3.18
2378 3468 5.476945 GGAGTACCATTTTTCCAGTGTCAAT 59.523 40.000 0.00 0.00 35.97 2.57
2379 3469 6.015434 GGAGTACCATTTTTCCAGTGTCAATT 60.015 38.462 0.00 0.00 35.97 2.32
2380 3470 7.175990 GGAGTACCATTTTTCCAGTGTCAATTA 59.824 37.037 0.00 0.00 35.97 1.40
2381 3471 8.110860 AGTACCATTTTTCCAGTGTCAATTAG 57.889 34.615 0.00 0.00 0.00 1.73
2382 3472 7.942341 AGTACCATTTTTCCAGTGTCAATTAGA 59.058 33.333 0.00 0.00 0.00 2.10
2383 3473 7.219484 ACCATTTTTCCAGTGTCAATTAGAG 57.781 36.000 0.00 0.00 0.00 2.43
2384 3474 7.004086 ACCATTTTTCCAGTGTCAATTAGAGA 58.996 34.615 0.00 0.00 0.00 3.10
2385 3475 7.175641 ACCATTTTTCCAGTGTCAATTAGAGAG 59.824 37.037 0.00 0.00 0.00 3.20
2386 3476 7.362401 CCATTTTTCCAGTGTCAATTAGAGAGG 60.362 40.741 0.00 0.00 0.00 3.69
2387 3477 3.895232 TCCAGTGTCAATTAGAGAGGC 57.105 47.619 0.00 0.00 0.00 4.70
2388 3478 2.166459 TCCAGTGTCAATTAGAGAGGCG 59.834 50.000 0.00 0.00 0.00 5.52
2389 3479 2.166459 CCAGTGTCAATTAGAGAGGCGA 59.834 50.000 0.00 0.00 0.00 5.54
2390 3480 3.181471 CCAGTGTCAATTAGAGAGGCGAT 60.181 47.826 0.00 0.00 0.00 4.58
2391 3481 4.038042 CCAGTGTCAATTAGAGAGGCGATA 59.962 45.833 0.00 0.00 0.00 2.92
2392 3482 5.279206 CCAGTGTCAATTAGAGAGGCGATAT 60.279 44.000 0.00 0.00 0.00 1.63
2393 3483 6.071896 CCAGTGTCAATTAGAGAGGCGATATA 60.072 42.308 0.00 0.00 0.00 0.86
2458 3548 1.076024 ACACACAGGGGCAAATCTGAT 59.924 47.619 0.00 0.00 35.20 2.90
2467 3557 1.739466 GGCAAATCTGATGAGCGTTCA 59.261 47.619 3.86 3.86 37.81 3.18
2489 3579 2.909965 GGCCAGCCCGTTCAAACA 60.910 61.111 0.00 0.00 0.00 2.83
2490 3580 2.494530 GGCCAGCCCGTTCAAACAA 61.495 57.895 0.00 0.00 0.00 2.83
2681 3852 9.493206 CATTTTTCATGTTTCTTTTGTTTCAGG 57.507 29.630 0.00 0.00 0.00 3.86
2781 3953 9.309516 CAGAGATTTCATAAAATGTTCCCATTG 57.690 33.333 0.00 0.00 40.42 2.82
2833 4005 5.566016 TGTTCGTGTTTCAAAAAGTCTTTCG 59.434 36.000 0.00 0.00 0.00 3.46
2840 4012 7.703197 GTGTTTCAAAAAGTCTTTCGGGAATTA 59.297 33.333 0.00 0.00 0.00 1.40
2957 4150 6.645700 TCATGTTTTGAAAAACTGTTCAGC 57.354 33.333 17.08 0.00 46.37 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.554363 CTACGGGAGCGGCGTCAG 62.554 72.222 9.37 5.82 0.00 3.51
26 27 2.093537 GAGATGCAGGGCTACGGGAG 62.094 65.000 0.00 0.00 0.00 4.30
27 28 2.041922 AGATGCAGGGCTACGGGA 60.042 61.111 0.00 0.00 0.00 5.14
28 29 2.423446 GAGATGCAGGGCTACGGG 59.577 66.667 0.00 0.00 0.00 5.28
29 30 2.028190 CGAGATGCAGGGCTACGG 59.972 66.667 0.00 0.00 0.00 4.02
30 31 2.659897 GCGAGATGCAGGGCTACG 60.660 66.667 0.00 0.00 45.45 3.51
39 40 4.819761 TGAGTGCGGGCGAGATGC 62.820 66.667 0.00 0.00 45.38 3.91
40 41 2.107750 ATGAGTGCGGGCGAGATG 59.892 61.111 0.00 0.00 0.00 2.90
41 42 2.107750 CATGAGTGCGGGCGAGAT 59.892 61.111 0.00 0.00 0.00 2.75
42 43 4.147449 CCATGAGTGCGGGCGAGA 62.147 66.667 0.00 0.00 0.00 4.04
51 52 2.435410 TCTGCAGCGCCATGAGTG 60.435 61.111 9.47 0.00 0.00 3.51
52 53 2.435586 GTCTGCAGCGCCATGAGT 60.436 61.111 9.47 0.00 0.00 3.41
53 54 2.435410 TGTCTGCAGCGCCATGAG 60.435 61.111 9.47 0.00 0.00 2.90
54 55 2.435410 CTGTCTGCAGCGCCATGA 60.435 61.111 9.47 0.00 35.77 3.07
85 86 3.075005 TTTCTCCCCTCTCCGCGG 61.075 66.667 22.12 22.12 0.00 6.46
86 87 2.184579 GTTTCTCCCCTCTCCGCG 59.815 66.667 0.00 0.00 0.00 6.46
87 88 1.219393 CTGTTTCTCCCCTCTCCGC 59.781 63.158 0.00 0.00 0.00 5.54
88 89 1.219393 GCTGTTTCTCCCCTCTCCG 59.781 63.158 0.00 0.00 0.00 4.63
89 90 1.201429 TGGCTGTTTCTCCCCTCTCC 61.201 60.000 0.00 0.00 0.00 3.71
90 91 0.915364 ATGGCTGTTTCTCCCCTCTC 59.085 55.000 0.00 0.00 0.00 3.20
91 92 0.622665 CATGGCTGTTTCTCCCCTCT 59.377 55.000 0.00 0.00 0.00 3.69
92 93 1.034292 GCATGGCTGTTTCTCCCCTC 61.034 60.000 0.00 0.00 0.00 4.30
93 94 1.000396 GCATGGCTGTTTCTCCCCT 60.000 57.895 0.00 0.00 0.00 4.79
94 95 2.054453 GGCATGGCTGTTTCTCCCC 61.054 63.158 12.86 0.00 0.00 4.81
95 96 2.409870 CGGCATGGCTGTTTCTCCC 61.410 63.158 18.09 0.00 0.00 4.30
96 97 3.056313 GCGGCATGGCTGTTTCTCC 62.056 63.158 18.09 0.00 37.24 3.71
97 98 2.486966 GCGGCATGGCTGTTTCTC 59.513 61.111 18.09 0.00 37.24 2.87
98 99 3.064324 GGCGGCATGGCTGTTTCT 61.064 61.111 18.09 0.00 40.72 2.52
99 100 3.372730 TGGCGGCATGGCTGTTTC 61.373 61.111 18.09 2.84 45.14 2.78
100 101 3.683937 GTGGCGGCATGGCTGTTT 61.684 61.111 17.19 0.00 45.14 2.83
106 107 3.944250 AAGGAAGGTGGCGGCATGG 62.944 63.158 17.19 0.00 0.00 3.66
107 108 2.361610 AAGGAAGGTGGCGGCATG 60.362 61.111 17.19 0.00 0.00 4.06
108 109 2.361610 CAAGGAAGGTGGCGGCAT 60.362 61.111 17.19 0.00 0.00 4.40
109 110 4.659172 CCAAGGAAGGTGGCGGCA 62.659 66.667 7.97 7.97 0.00 5.69
111 112 4.740822 CCCCAAGGAAGGTGGCGG 62.741 72.222 0.00 0.00 34.56 6.13
113 114 4.299796 TGCCCCAAGGAAGGTGGC 62.300 66.667 0.00 0.00 42.15 5.01
114 115 2.283173 GTGCCCCAAGGAAGGTGG 60.283 66.667 0.00 0.00 35.77 4.61
115 116 2.672996 CGTGCCCCAAGGAAGGTG 60.673 66.667 0.00 0.00 33.47 4.00
116 117 4.660938 GCGTGCCCCAAGGAAGGT 62.661 66.667 0.00 0.00 33.47 3.50
167 168 4.166011 CAAACCTAGCGCCGCAGC 62.166 66.667 13.36 1.19 37.41 5.25
168 169 2.742372 ACAAACCTAGCGCCGCAG 60.742 61.111 13.36 6.71 0.00 5.18
169 170 3.047280 CACAAACCTAGCGCCGCA 61.047 61.111 13.36 0.00 0.00 5.69
170 171 3.047877 ACACAAACCTAGCGCCGC 61.048 61.111 2.29 0.00 0.00 6.53
171 172 1.019278 ATCACACAAACCTAGCGCCG 61.019 55.000 2.29 0.00 0.00 6.46
172 173 0.447801 CATCACACAAACCTAGCGCC 59.552 55.000 2.29 0.00 0.00 6.53
173 174 0.179189 GCATCACACAAACCTAGCGC 60.179 55.000 0.00 0.00 0.00 5.92
174 175 0.095245 CGCATCACACAAACCTAGCG 59.905 55.000 0.00 0.00 37.91 4.26
175 176 0.447801 CCGCATCACACAAACCTAGC 59.552 55.000 0.00 0.00 0.00 3.42
176 177 1.808411 ACCGCATCACACAAACCTAG 58.192 50.000 0.00 0.00 0.00 3.02
177 178 2.264005 AACCGCATCACACAAACCTA 57.736 45.000 0.00 0.00 0.00 3.08
178 179 1.336755 GAAACCGCATCACACAAACCT 59.663 47.619 0.00 0.00 0.00 3.50
179 180 1.066303 TGAAACCGCATCACACAAACC 59.934 47.619 0.00 0.00 0.00 3.27
180 181 2.483583 TGAAACCGCATCACACAAAC 57.516 45.000 0.00 0.00 0.00 2.93
181 182 6.094742 ACATATATGAAACCGCATCACACAAA 59.905 34.615 19.63 0.00 0.00 2.83
182 183 5.588246 ACATATATGAAACCGCATCACACAA 59.412 36.000 19.63 0.00 0.00 3.33
183 184 5.007528 CACATATATGAAACCGCATCACACA 59.992 40.000 19.63 0.00 0.00 3.72
184 185 5.007626 ACACATATATGAAACCGCATCACAC 59.992 40.000 19.63 0.00 0.00 3.82
185 186 5.122519 ACACATATATGAAACCGCATCACA 58.877 37.500 19.63 0.00 0.00 3.58
186 187 5.673337 ACACATATATGAAACCGCATCAC 57.327 39.130 19.63 0.00 0.00 3.06
187 188 5.588246 ACAACACATATATGAAACCGCATCA 59.412 36.000 19.63 0.00 0.00 3.07
188 189 6.060028 ACAACACATATATGAAACCGCATC 57.940 37.500 19.63 0.00 0.00 3.91
189 190 7.744087 ATACAACACATATATGAAACCGCAT 57.256 32.000 19.63 1.96 0.00 4.73
190 191 7.711339 TGTATACAACACATATATGAAACCGCA 59.289 33.333 19.63 4.58 31.43 5.69
191 192 8.078959 TGTATACAACACATATATGAAACCGC 57.921 34.615 19.63 2.30 31.43 5.68
233 234 9.603298 CGAACATGATCAAACATAAATCTATGG 57.397 33.333 0.00 0.00 39.49 2.74
236 237 8.207521 TGCGAACATGATCAAACATAAATCTA 57.792 30.769 0.00 0.00 0.00 1.98
285 286 5.393787 GCAATCTGGGTGCATAATGATATGG 60.394 44.000 0.00 0.00 41.80 2.74
314 315 7.011109 GGATTTACAGAAAGTACGTACATGCAT 59.989 37.037 26.55 9.33 30.91 3.96
324 325 8.859236 AGTTAAAGGGGATTTACAGAAAGTAC 57.141 34.615 0.00 0.00 33.04 2.73
325 326 9.871175 AAAGTTAAAGGGGATTTACAGAAAGTA 57.129 29.630 0.00 0.00 33.04 2.24
326 327 8.777578 AAAGTTAAAGGGGATTTACAGAAAGT 57.222 30.769 0.00 0.00 33.04 2.66
336 337 9.932207 CCGTTTAAATAAAAGTTAAAGGGGATT 57.068 29.630 17.19 0.00 44.83 3.01
357 358 8.234136 TCATCTCTATCATAGTTACACCGTTT 57.766 34.615 0.00 0.00 0.00 3.60
447 448 6.808321 ATGTATAGTGGCTAGGAAGTGAAA 57.192 37.500 0.00 0.00 0.00 2.69
480 481 0.445436 GTTGCTTCATCGGTGCTCAG 59.555 55.000 0.00 0.00 0.00 3.35
505 506 4.141824 TGGTGGCAAATATCATGTCTCGTA 60.142 41.667 0.00 0.00 0.00 3.43
506 507 3.206150 GGTGGCAAATATCATGTCTCGT 58.794 45.455 0.00 0.00 0.00 4.18
535 536 4.604114 CTGACTTGCAGGATCGCA 57.396 55.556 1.40 0.00 41.07 5.10
562 563 1.895131 AGTGGCCTTGTTGCTAAATGG 59.105 47.619 3.32 0.00 0.00 3.16
612 613 2.761208 ACTCTTACAGAACCGATCCCAG 59.239 50.000 0.00 0.00 0.00 4.45
629 630 0.615331 ATGTTCATGCCGGTCACTCT 59.385 50.000 1.90 0.00 0.00 3.24
630 631 0.729116 CATGTTCATGCCGGTCACTC 59.271 55.000 1.90 0.00 0.00 3.51
660 661 3.682766 ATCAGGCTTGATCTCGCTG 57.317 52.632 5.32 0.00 39.94 5.18
673 674 2.408050 GCAGGCTATACAACGATCAGG 58.592 52.381 0.00 0.00 0.00 3.86
722 1706 4.025647 GGACAGCGTTTTCTATGTCTATGC 60.026 45.833 4.39 0.00 41.40 3.14
723 1707 5.005779 GTGGACAGCGTTTTCTATGTCTATG 59.994 44.000 4.39 0.00 41.40 2.23
863 1870 1.616865 CCGTCTAAAGTGGACTGGTGA 59.383 52.381 0.00 0.00 0.00 4.02
994 2043 0.602562 TTCTGGGCAGCCATTTTTCG 59.397 50.000 15.19 0.00 0.00 3.46
1038 2090 0.246635 CGTGGAGTCCGGTGATCTTT 59.753 55.000 4.30 0.00 0.00 2.52
1143 2195 4.309950 GTCACGTCCACGGGGCTT 62.310 66.667 0.00 0.00 45.13 4.35
1185 2237 1.700042 GGATGAGTCCCTCCCGCATT 61.700 60.000 0.00 0.00 38.69 3.56
1794 2846 2.271800 GAGTTCACCACGTCATCATCC 58.728 52.381 0.00 0.00 0.00 3.51
1800 2852 3.528853 ACGGAGTTCACCACGTCA 58.471 55.556 0.00 0.00 37.78 4.35
1824 2876 0.249868 CGTCCTTGGACTTCTGTGCA 60.250 55.000 16.60 0.00 42.73 4.57
1869 2921 0.107703 ACGCATACTGTCCACCATGG 60.108 55.000 11.19 11.19 39.43 3.66
1939 3003 0.107312 CTCTTCTGGGCCATGTCTGG 60.107 60.000 6.72 0.00 46.17 3.86
2008 3072 3.452264 TGATCACACATTACTCCCTCTGG 59.548 47.826 0.00 0.00 0.00 3.86
2009 3073 4.743057 TGATCACACATTACTCCCTCTG 57.257 45.455 0.00 0.00 0.00 3.35
2011 3075 5.282055 TGATGATCACACATTACTCCCTC 57.718 43.478 0.00 0.00 0.00 4.30
2017 3081 5.335426 GGCATGGATGATGATCACACATTAC 60.335 44.000 15.33 12.62 33.31 1.89
2025 3095 1.609841 GCGAGGCATGGATGATGATCA 60.610 52.381 0.00 0.00 33.31 2.92
2083 3158 9.458727 TTGAAATGCAGTAGTAGTAGTAGTAGT 57.541 33.333 0.00 0.00 0.00 2.73
2084 3159 9.938670 CTTGAAATGCAGTAGTAGTAGTAGTAG 57.061 37.037 0.00 0.00 0.00 2.57
2085 3160 9.458727 ACTTGAAATGCAGTAGTAGTAGTAGTA 57.541 33.333 0.00 0.00 0.00 1.82
2086 3161 8.350852 ACTTGAAATGCAGTAGTAGTAGTAGT 57.649 34.615 0.00 0.00 0.00 2.73
2087 3162 8.459635 TGACTTGAAATGCAGTAGTAGTAGTAG 58.540 37.037 0.00 0.00 0.00 2.57
2088 3163 8.344446 TGACTTGAAATGCAGTAGTAGTAGTA 57.656 34.615 0.00 0.00 0.00 1.82
2089 3164 7.228314 TGACTTGAAATGCAGTAGTAGTAGT 57.772 36.000 0.00 0.00 0.00 2.73
2129 3219 9.798994 AAACGTCGTATAGAAATAAACAGAGAT 57.201 29.630 0.00 0.00 0.00 2.75
2130 3220 9.630098 AAAACGTCGTATAGAAATAAACAGAGA 57.370 29.630 0.00 0.00 0.00 3.10
2139 3229 9.577110 TGAATGTCTAAAACGTCGTATAGAAAT 57.423 29.630 17.53 15.67 0.00 2.17
2140 3230 8.969121 TGAATGTCTAAAACGTCGTATAGAAA 57.031 30.769 17.53 14.47 0.00 2.52
2141 3231 8.453320 TCTGAATGTCTAAAACGTCGTATAGAA 58.547 33.333 17.53 11.15 0.00 2.10
2142 3232 7.907045 GTCTGAATGTCTAAAACGTCGTATAGA 59.093 37.037 13.79 13.79 0.00 1.98
2143 3233 7.695201 TGTCTGAATGTCTAAAACGTCGTATAG 59.305 37.037 0.00 5.08 0.00 1.31
2144 3234 7.529158 TGTCTGAATGTCTAAAACGTCGTATA 58.471 34.615 0.00 0.00 0.00 1.47
2145 3235 6.384224 TGTCTGAATGTCTAAAACGTCGTAT 58.616 36.000 0.00 0.00 0.00 3.06
2146 3236 5.761003 TGTCTGAATGTCTAAAACGTCGTA 58.239 37.500 0.00 0.00 0.00 3.43
2147 3237 4.613944 TGTCTGAATGTCTAAAACGTCGT 58.386 39.130 0.00 0.00 0.00 4.34
2148 3238 5.763444 ATGTCTGAATGTCTAAAACGTCG 57.237 39.130 0.00 0.00 0.00 5.12
2149 3239 6.888430 ACAATGTCTGAATGTCTAAAACGTC 58.112 36.000 0.00 0.00 0.00 4.34
2150 3240 6.861065 ACAATGTCTGAATGTCTAAAACGT 57.139 33.333 0.00 0.00 0.00 3.99
2151 3241 7.351981 TGAACAATGTCTGAATGTCTAAAACG 58.648 34.615 0.00 0.00 0.00 3.60
2155 3245 9.500785 TGTTATGAACAATGTCTGAATGTCTAA 57.499 29.630 0.00 0.00 38.72 2.10
2156 3246 9.154847 CTGTTATGAACAATGTCTGAATGTCTA 57.845 33.333 0.00 0.00 41.61 2.59
2157 3247 7.663081 ACTGTTATGAACAATGTCTGAATGTCT 59.337 33.333 0.00 0.00 41.61 3.41
2158 3248 7.810658 ACTGTTATGAACAATGTCTGAATGTC 58.189 34.615 0.00 0.00 41.61 3.06
2159 3249 7.750229 ACTGTTATGAACAATGTCTGAATGT 57.250 32.000 0.00 0.00 41.61 2.71
2160 3250 8.720562 TGTACTGTTATGAACAATGTCTGAATG 58.279 33.333 0.00 0.00 41.61 2.67
2161 3251 8.846943 TGTACTGTTATGAACAATGTCTGAAT 57.153 30.769 0.00 0.00 41.61 2.57
2162 3252 8.669946 TTGTACTGTTATGAACAATGTCTGAA 57.330 30.769 0.00 0.00 41.61 3.02
2163 3253 8.669946 TTTGTACTGTTATGAACAATGTCTGA 57.330 30.769 0.00 0.00 41.61 3.27
2164 3254 7.535258 GCTTTGTACTGTTATGAACAATGTCTG 59.465 37.037 0.00 0.00 41.61 3.51
2165 3255 7.228507 TGCTTTGTACTGTTATGAACAATGTCT 59.771 33.333 0.00 0.00 41.61 3.41
2166 3256 7.359595 TGCTTTGTACTGTTATGAACAATGTC 58.640 34.615 0.00 3.16 41.61 3.06
2167 3257 7.270757 TGCTTTGTACTGTTATGAACAATGT 57.729 32.000 0.00 0.00 41.61 2.71
2168 3258 7.148918 GCTTGCTTTGTACTGTTATGAACAATG 60.149 37.037 0.00 0.00 41.61 2.82
2169 3259 6.863126 GCTTGCTTTGTACTGTTATGAACAAT 59.137 34.615 0.00 0.00 41.61 2.71
2170 3260 6.039270 AGCTTGCTTTGTACTGTTATGAACAA 59.961 34.615 0.00 0.00 41.61 2.83
2171 3261 5.530915 AGCTTGCTTTGTACTGTTATGAACA 59.469 36.000 0.00 0.00 39.52 3.18
2172 3262 5.853282 CAGCTTGCTTTGTACTGTTATGAAC 59.147 40.000 0.00 0.00 0.00 3.18
2173 3263 5.530915 ACAGCTTGCTTTGTACTGTTATGAA 59.469 36.000 0.00 0.00 38.38 2.57
2174 3264 5.063204 ACAGCTTGCTTTGTACTGTTATGA 58.937 37.500 0.00 0.00 38.38 2.15
2175 3265 5.362556 ACAGCTTGCTTTGTACTGTTATG 57.637 39.130 0.00 0.00 38.38 1.90
2176 3266 4.455877 GGACAGCTTGCTTTGTACTGTTAT 59.544 41.667 0.00 0.00 41.45 1.89
2177 3267 3.813166 GGACAGCTTGCTTTGTACTGTTA 59.187 43.478 0.00 0.00 41.45 2.41
2178 3268 2.618709 GGACAGCTTGCTTTGTACTGTT 59.381 45.455 0.00 0.00 41.45 3.16
2179 3269 2.222027 GGACAGCTTGCTTTGTACTGT 58.778 47.619 0.00 0.00 43.93 3.55
2180 3270 1.195448 CGGACAGCTTGCTTTGTACTG 59.805 52.381 0.00 0.00 0.00 2.74
2181 3271 1.070134 TCGGACAGCTTGCTTTGTACT 59.930 47.619 0.00 0.00 0.00 2.73
2182 3272 1.508632 TCGGACAGCTTGCTTTGTAC 58.491 50.000 0.00 0.00 0.00 2.90
2183 3273 2.248280 TTCGGACAGCTTGCTTTGTA 57.752 45.000 0.00 0.00 0.00 2.41
2184 3274 1.065551 GTTTCGGACAGCTTGCTTTGT 59.934 47.619 0.00 0.00 0.00 2.83
2185 3275 1.758783 GTTTCGGACAGCTTGCTTTG 58.241 50.000 0.00 0.00 0.00 2.77
2186 3276 0.307760 CGTTTCGGACAGCTTGCTTT 59.692 50.000 0.00 0.00 0.00 3.51
2187 3277 0.814010 ACGTTTCGGACAGCTTGCTT 60.814 50.000 0.00 0.00 0.00 3.91
2188 3278 1.222115 GACGTTTCGGACAGCTTGCT 61.222 55.000 0.00 0.00 0.00 3.91
2189 3279 1.204312 GACGTTTCGGACAGCTTGC 59.796 57.895 0.00 0.00 0.00 4.01
2190 3280 1.217882 AAGACGTTTCGGACAGCTTG 58.782 50.000 0.00 0.00 0.00 4.01
2191 3281 2.806608 TAAGACGTTTCGGACAGCTT 57.193 45.000 0.00 0.00 0.00 3.74
2192 3282 4.445452 TTATAAGACGTTTCGGACAGCT 57.555 40.909 0.00 0.00 0.00 4.24
2193 3283 5.520022 TTTTATAAGACGTTTCGGACAGC 57.480 39.130 0.00 0.00 0.00 4.40
2194 3284 6.879962 TGTTTTTATAAGACGTTTCGGACAG 58.120 36.000 0.00 0.00 0.00 3.51
2195 3285 6.841443 TGTTTTTATAAGACGTTTCGGACA 57.159 33.333 0.00 0.00 0.00 4.02
2196 3286 7.149462 CGTTTGTTTTTATAAGACGTTTCGGAC 60.149 37.037 0.00 0.00 0.00 4.79
2197 3287 6.845280 CGTTTGTTTTTATAAGACGTTTCGGA 59.155 34.615 0.00 0.00 0.00 4.55
2198 3288 6.085328 CCGTTTGTTTTTATAAGACGTTTCGG 59.915 38.462 0.00 0.00 0.00 4.30
2199 3289 6.845280 TCCGTTTGTTTTTATAAGACGTTTCG 59.155 34.615 0.00 0.00 0.00 3.46
2200 3290 7.321984 CCTCCGTTTGTTTTTATAAGACGTTTC 59.678 37.037 0.00 0.00 0.00 2.78
2201 3291 7.134163 CCTCCGTTTGTTTTTATAAGACGTTT 58.866 34.615 0.00 0.00 0.00 3.60
2202 3292 6.293571 CCCTCCGTTTGTTTTTATAAGACGTT 60.294 38.462 0.00 0.00 0.00 3.99
2203 3293 5.179929 CCCTCCGTTTGTTTTTATAAGACGT 59.820 40.000 0.00 0.00 0.00 4.34
2204 3294 5.409214 TCCCTCCGTTTGTTTTTATAAGACG 59.591 40.000 0.00 0.00 0.00 4.18
2205 3295 6.429078 ACTCCCTCCGTTTGTTTTTATAAGAC 59.571 38.462 0.00 0.00 0.00 3.01
2206 3296 6.536447 ACTCCCTCCGTTTGTTTTTATAAGA 58.464 36.000 0.00 0.00 0.00 2.10
2207 3297 6.812879 ACTCCCTCCGTTTGTTTTTATAAG 57.187 37.500 0.00 0.00 0.00 1.73
2208 3298 6.654582 GGTACTCCCTCCGTTTGTTTTTATAA 59.345 38.462 0.00 0.00 0.00 0.98
2209 3299 6.172630 GGTACTCCCTCCGTTTGTTTTTATA 58.827 40.000 0.00 0.00 0.00 0.98
2210 3300 5.005740 GGTACTCCCTCCGTTTGTTTTTAT 58.994 41.667 0.00 0.00 0.00 1.40
2211 3301 4.388485 GGTACTCCCTCCGTTTGTTTTTA 58.612 43.478 0.00 0.00 0.00 1.52
2212 3302 3.216800 GGTACTCCCTCCGTTTGTTTTT 58.783 45.455 0.00 0.00 0.00 1.94
2213 3303 2.807837 CGGTACTCCCTCCGTTTGTTTT 60.808 50.000 0.00 0.00 41.58 2.43
2214 3304 1.270465 CGGTACTCCCTCCGTTTGTTT 60.270 52.381 0.00 0.00 41.58 2.83
2215 3305 0.319405 CGGTACTCCCTCCGTTTGTT 59.681 55.000 0.00 0.00 41.58 2.83
2216 3306 0.540365 TCGGTACTCCCTCCGTTTGT 60.540 55.000 3.64 0.00 45.88 2.83
2217 3307 0.604578 TTCGGTACTCCCTCCGTTTG 59.395 55.000 3.64 0.00 45.88 2.93
2218 3308 1.565067 ATTCGGTACTCCCTCCGTTT 58.435 50.000 3.64 0.00 45.88 3.60
2219 3309 2.442236 TATTCGGTACTCCCTCCGTT 57.558 50.000 3.64 0.00 45.88 4.44
2220 3310 2.442236 TTATTCGGTACTCCCTCCGT 57.558 50.000 3.64 0.00 45.88 4.69
2221 3311 2.626743 ACATTATTCGGTACTCCCTCCG 59.373 50.000 0.00 0.00 46.93 4.63
2222 3312 5.303845 ACTTACATTATTCGGTACTCCCTCC 59.696 44.000 0.00 0.00 0.00 4.30
2223 3313 6.183360 ACACTTACATTATTCGGTACTCCCTC 60.183 42.308 0.00 0.00 0.00 4.30
2224 3314 5.659971 ACACTTACATTATTCGGTACTCCCT 59.340 40.000 0.00 0.00 0.00 4.20
2225 3315 5.751990 CACACTTACATTATTCGGTACTCCC 59.248 44.000 0.00 0.00 0.00 4.30
2226 3316 5.751990 CCACACTTACATTATTCGGTACTCC 59.248 44.000 0.00 0.00 0.00 3.85
2227 3317 6.255020 CACCACACTTACATTATTCGGTACTC 59.745 42.308 0.00 0.00 0.00 2.59
2228 3318 6.103997 CACCACACTTACATTATTCGGTACT 58.896 40.000 0.00 0.00 0.00 2.73
2229 3319 5.870978 ACACCACACTTACATTATTCGGTAC 59.129 40.000 0.00 0.00 0.00 3.34
2230 3320 6.040209 ACACCACACTTACATTATTCGGTA 57.960 37.500 0.00 0.00 0.00 4.02
2231 3321 4.901868 ACACCACACTTACATTATTCGGT 58.098 39.130 0.00 0.00 0.00 4.69
2232 3322 5.873179 AACACCACACTTACATTATTCGG 57.127 39.130 0.00 0.00 0.00 4.30
2233 3323 7.742963 GTGTAAACACCACACTTACATTATTCG 59.257 37.037 1.65 0.00 42.43 3.34
2234 3324 7.742963 CGTGTAAACACCACACTTACATTATTC 59.257 37.037 7.63 0.00 43.32 1.75
2336 3426 1.939934 TCCCGTACGAGTATGTAACCG 59.060 52.381 18.76 0.00 0.00 4.44
2338 3428 4.024809 GGTACTCCCGTACGAGTATGTAAC 60.025 50.000 18.76 10.80 44.88 2.50
2347 3437 3.368323 GGAAAAATGGTACTCCCGTACGA 60.368 47.826 18.76 0.00 45.52 3.43
2348 3438 2.931969 GGAAAAATGGTACTCCCGTACG 59.068 50.000 8.69 8.69 45.52 3.67
2349 3439 3.937079 CTGGAAAAATGGTACTCCCGTAC 59.063 47.826 0.00 0.00 44.18 3.67
2350 3440 3.583966 ACTGGAAAAATGGTACTCCCGTA 59.416 43.478 0.00 0.00 35.15 4.02
2351 3441 2.374170 ACTGGAAAAATGGTACTCCCGT 59.626 45.455 0.00 0.00 35.15 5.28
2352 3442 2.747446 CACTGGAAAAATGGTACTCCCG 59.253 50.000 0.00 0.00 35.15 5.14
2353 3443 3.756963 GACACTGGAAAAATGGTACTCCC 59.243 47.826 0.00 0.00 0.00 4.30
2354 3444 4.394729 TGACACTGGAAAAATGGTACTCC 58.605 43.478 0.00 0.00 0.00 3.85
2355 3445 6.575162 ATTGACACTGGAAAAATGGTACTC 57.425 37.500 0.00 0.00 0.00 2.59
2356 3446 6.976934 AATTGACACTGGAAAAATGGTACT 57.023 33.333 0.00 0.00 0.00 2.73
2357 3447 8.106247 TCTAATTGACACTGGAAAAATGGTAC 57.894 34.615 0.00 0.00 0.00 3.34
2358 3448 8.160765 TCTCTAATTGACACTGGAAAAATGGTA 58.839 33.333 0.00 0.00 0.00 3.25
2359 3449 7.004086 TCTCTAATTGACACTGGAAAAATGGT 58.996 34.615 0.00 0.00 0.00 3.55
2360 3450 7.362401 CCTCTCTAATTGACACTGGAAAAATGG 60.362 40.741 0.00 0.00 0.00 3.16
2361 3451 7.533426 CCTCTCTAATTGACACTGGAAAAATG 58.467 38.462 0.00 0.00 0.00 2.32
2362 3452 6.151817 GCCTCTCTAATTGACACTGGAAAAAT 59.848 38.462 0.00 0.00 0.00 1.82
2363 3453 5.473504 GCCTCTCTAATTGACACTGGAAAAA 59.526 40.000 0.00 0.00 0.00 1.94
2364 3454 5.003804 GCCTCTCTAATTGACACTGGAAAA 58.996 41.667 0.00 0.00 0.00 2.29
2365 3455 4.579869 GCCTCTCTAATTGACACTGGAAA 58.420 43.478 0.00 0.00 0.00 3.13
2366 3456 3.368427 CGCCTCTCTAATTGACACTGGAA 60.368 47.826 0.00 0.00 0.00 3.53
2367 3457 2.166459 CGCCTCTCTAATTGACACTGGA 59.834 50.000 0.00 0.00 0.00 3.86
2368 3458 2.166459 TCGCCTCTCTAATTGACACTGG 59.834 50.000 0.00 0.00 0.00 4.00
2369 3459 3.510388 TCGCCTCTCTAATTGACACTG 57.490 47.619 0.00 0.00 0.00 3.66
2370 3460 7.309499 CCTTATATCGCCTCTCTAATTGACACT 60.309 40.741 0.00 0.00 0.00 3.55
2371 3461 6.809196 CCTTATATCGCCTCTCTAATTGACAC 59.191 42.308 0.00 0.00 0.00 3.67
2372 3462 6.719829 TCCTTATATCGCCTCTCTAATTGACA 59.280 38.462 0.00 0.00 0.00 3.58
2373 3463 7.159322 TCCTTATATCGCCTCTCTAATTGAC 57.841 40.000 0.00 0.00 0.00 3.18
2374 3464 7.776618 TTCCTTATATCGCCTCTCTAATTGA 57.223 36.000 0.00 0.00 0.00 2.57
2375 3465 9.442047 AATTTCCTTATATCGCCTCTCTAATTG 57.558 33.333 0.00 0.00 0.00 2.32
2376 3466 9.660180 GAATTTCCTTATATCGCCTCTCTAATT 57.340 33.333 0.00 0.00 0.00 1.40
2377 3467 8.261522 GGAATTTCCTTATATCGCCTCTCTAAT 58.738 37.037 8.25 0.00 32.53 1.73
2378 3468 7.455008 AGGAATTTCCTTATATCGCCTCTCTAA 59.545 37.037 12.37 0.00 46.91 2.10
2379 3469 6.954684 AGGAATTTCCTTATATCGCCTCTCTA 59.045 38.462 12.37 0.00 46.91 2.43
2380 3470 5.782845 AGGAATTTCCTTATATCGCCTCTCT 59.217 40.000 12.37 0.00 46.91 3.10
2381 3471 6.043854 AGGAATTTCCTTATATCGCCTCTC 57.956 41.667 12.37 0.00 46.91 3.20
2382 3472 7.741554 ATAGGAATTTCCTTATATCGCCTCT 57.258 36.000 22.63 0.00 46.91 3.69
2383 3473 8.669243 CAAATAGGAATTTCCTTATATCGCCTC 58.331 37.037 22.63 0.00 46.91 4.70
2384 3474 7.121315 GCAAATAGGAATTTCCTTATATCGCCT 59.879 37.037 22.63 0.00 46.91 5.52
2385 3475 7.094377 TGCAAATAGGAATTTCCTTATATCGCC 60.094 37.037 22.63 5.85 46.91 5.54
2386 3476 7.816640 TGCAAATAGGAATTTCCTTATATCGC 58.183 34.615 22.63 16.87 46.91 4.58
2387 3477 7.965107 GCTGCAAATAGGAATTTCCTTATATCG 59.035 37.037 22.63 8.63 46.91 2.92
2388 3478 9.018582 AGCTGCAAATAGGAATTTCCTTATATC 57.981 33.333 22.63 10.52 46.91 1.63
2389 3479 8.946797 AGCTGCAAATAGGAATTTCCTTATAT 57.053 30.769 22.63 8.20 46.91 0.86
2390 3480 7.173218 CGAGCTGCAAATAGGAATTTCCTTATA 59.827 37.037 22.63 6.07 46.91 0.98
2391 3481 6.016777 CGAGCTGCAAATAGGAATTTCCTTAT 60.017 38.462 22.63 9.68 46.91 1.73
2392 3482 5.296780 CGAGCTGCAAATAGGAATTTCCTTA 59.703 40.000 22.63 9.63 46.91 2.69
2393 3483 4.096984 CGAGCTGCAAATAGGAATTTCCTT 59.903 41.667 22.63 8.51 46.91 3.36
2411 3501 1.738099 CTACTTGCCGCAACGAGCT 60.738 57.895 0.38 0.00 42.61 4.09
2440 3530 1.355381 TCATCAGATTTGCCCCTGTGT 59.645 47.619 0.00 0.00 0.00 3.72
2458 3548 2.268920 GGCCCATCTGAACGCTCA 59.731 61.111 0.00 0.00 0.00 4.26
2489 3579 3.378911 AAAAACCGGATTCGCACAATT 57.621 38.095 9.46 0.00 34.56 2.32
2656 3818 9.447157 TCCTGAAACAAAAGAAACATGAAAAAT 57.553 25.926 0.00 0.00 0.00 1.82
2751 3923 7.698130 GGGAACATTTTATGAAATCTCTGAACG 59.302 37.037 0.00 0.00 33.25 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.